Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85703.t1 | XP_013451880.1 | 97.9 | 284 | 6 | 0 | 1 | 284 | 1 | 284 | 1.50E-152 | 548.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85703.t1 | Q9SRE0 | 67.2 | 293 | 82 | 3 | 6 | 284 | 2 | 294 | 3.8e-101 | 369.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85703.t1 | I3T039 | 97.9 | 284 | 6 | 0 | 1 | 284 | 1 | 284 | 1.0e-152 | 548.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene85703 | 0.868266 | 7.42E-66 | -1.69E-46 |
| MS.gene049222 | MS.gene85703 | 0.801275 | 9.72E-49 | -1.69E-46 |
| MS.gene049351 | MS.gene85703 | 0.819628 | 1.05E-52 | -1.69E-46 |
| MS.gene049356 | MS.gene85703 | 0.803642 | 3.16E-49 | -1.69E-46 |
| MS.gene049427 | MS.gene85703 | 0.864624 | 1.06E-64 | -1.69E-46 |
| MS.gene049488 | MS.gene85703 | 0.807551 | 4.78E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene85703 | 0.84504 | 5.20E-59 | -1.69E-46 |
| MS.gene049661 | MS.gene85703 | 0.847228 | 1.32E-59 | -1.69E-46 |
| MS.gene049662 | MS.gene85703 | 0.841259 | 5.30E-58 | -1.69E-46 |
| MS.gene049805 | MS.gene85703 | 0.870163 | 1.80E-66 | -1.69E-46 |
| MS.gene050076 | MS.gene85703 | 0.827641 | 1.40E-54 | -1.69E-46 |
| MS.gene050301 | MS.gene85703 | 0.845028 | 5.24E-59 | -1.69E-46 |
| MS.gene050397 | MS.gene85703 | 0.801669 | 8.07E-49 | -1.69E-46 |
| MS.gene050432 | MS.gene85703 | 0.845016 | 5.28E-59 | -1.69E-46 |
| MS.gene050464 | MS.gene85703 | 0.809547 | 1.79E-50 | -1.69E-46 |
| MS.gene050529 | MS.gene85703 | 0.823466 | 1.36E-53 | -1.69E-46 |
| MS.gene050538 | MS.gene85703 | 0.804011 | 2.65E-49 | -1.69E-46 |
| MS.gene050593 | MS.gene85703 | 0.835141 | 1.99E-56 | -1.69E-46 |
| MS.gene050670 | MS.gene85703 | 0.880273 | 6.29E-70 | -1.69E-46 |
| MS.gene050747 | MS.gene85703 | 0.842961 | 1.88E-58 | -1.69E-46 |
| MS.gene050770 | MS.gene85703 | 0.80157 | 8.46E-49 | -1.69E-46 |
| MS.gene050772 | MS.gene85703 | 0.82207 | 2.88E-53 | -1.69E-46 |
| MS.gene050783 | MS.gene85703 | 0.84723 | 1.32E-59 | -1.69E-46 |
| MS.gene050812 | MS.gene85703 | 0.83668 | 8.12E-57 | -1.69E-46 |
| MS.gene050950 | MS.gene85703 | 0.838401 | 2.94E-57 | -1.69E-46 |
| MS.gene05101 | MS.gene85703 | 0.838485 | 2.80E-57 | -1.69E-46 |
| MS.gene05105 | MS.gene85703 | 0.873979 | 9.66E-68 | -1.69E-46 |
| MS.gene051387 | MS.gene85703 | 0.877641 | 5.34E-69 | -1.69E-46 |
| MS.gene051471 | MS.gene85703 | 0.815903 | 7.28E-52 | -1.69E-46 |
| MS.gene051525 | MS.gene85703 | 0.821906 | 3.15E-53 | -1.69E-46 |
| MS.gene051582 | MS.gene85703 | 0.86832 | 7.13E-66 | -1.69E-46 |
| MS.gene051605 | MS.gene85703 | 0.806416 | 8.31E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene85703 | 0.846471 | 2.13E-59 | -1.69E-46 |
| MS.gene052078 | MS.gene85703 | 0.817158 | 3.81E-52 | -1.69E-46 |
| MS.gene052188 | MS.gene85703 | 0.858947 | 5.81E-63 | -1.69E-46 |
| MS.gene052253 | MS.gene85703 | 0.845161 | 4.83E-59 | -1.69E-46 |
| MS.gene052310 | MS.gene85703 | 0.866523 | 2.68E-65 | -1.69E-46 |
| MS.gene052322 | MS.gene85703 | 0.856243 | 3.67E-62 | -1.69E-46 |
| MS.gene052340 | MS.gene85703 | 0.835511 | 1.61E-56 | -1.69E-46 |
| MS.gene052414 | MS.gene85703 | 0.822439 | 2.37E-53 | -1.69E-46 |
| MS.gene052421 | MS.gene85703 | 0.874607 | 5.92E-68 | -1.69E-46 |
| MS.gene052481 | MS.gene85703 | 0.851663 | 7.67E-61 | -1.69E-46 |
| MS.gene052484 | MS.gene85703 | 0.838536 | 2.71E-57 | -1.69E-46 |
| MS.gene052485 | MS.gene85703 | 0.837003 | 6.72E-57 | -1.69E-46 |
| MS.gene052501 | MS.gene85703 | 0.835049 | 2.10E-56 | -1.69E-46 |
| MS.gene052505 | MS.gene85703 | 0.850995 | 1.18E-60 | -1.69E-46 |
| MS.gene052615 | MS.gene85703 | 0.835182 | 1.95E-56 | -1.69E-46 |
| MS.gene052982 | MS.gene85703 | 0.852708 | 3.87E-61 | -1.69E-46 |
| MS.gene053103 | MS.gene85703 | 0.843539 | 1.32E-58 | -1.69E-46 |
| MS.gene053104 | MS.gene85703 | 0.820732 | 5.87E-53 | -1.69E-46 |
| MS.gene053107 | MS.gene85703 | 0.813562 | 2.40E-51 | -1.69E-46 |
| MS.gene053207 | MS.gene85703 | 0.843474 | 1.37E-58 | -1.69E-46 |
| MS.gene053209 | MS.gene85703 | 0.828201 | 1.03E-54 | -1.69E-46 |
| MS.gene053213 | MS.gene85703 | 0.821442 | 4.03E-53 | -1.69E-46 |
| MS.gene053286 | MS.gene85703 | 0.810759 | 9.82E-51 | -1.69E-46 |
| MS.gene053322 | MS.gene85703 | 0.842086 | 3.21E-58 | -1.69E-46 |
| MS.gene053574 | MS.gene85703 | 0.813533 | 2.44E-51 | -1.69E-46 |
| MS.gene053579 | MS.gene85703 | 0.824097 | 9.71E-54 | -1.69E-46 |
| MS.gene053632 | MS.gene85703 | 0.82668 | 2.37E-54 | -1.69E-46 |
| MS.gene053758 | MS.gene85703 | 0.81435 | 1.61E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene85703 | 0.811993 | 5.30E-51 | -1.69E-46 |
| MS.gene053912 | MS.gene85703 | 0.811366 | 7.26E-51 | -1.69E-46 |
| MS.gene054123 | MS.gene85703 | 0.83882 | 2.29E-57 | -1.69E-46 |
| MS.gene05413 | MS.gene85703 | 0.800451 | 1.43E-48 | -1.69E-46 |
| MS.gene054376 | MS.gene85703 | 0.816128 | 6.49E-52 | -1.69E-46 |
| MS.gene054802 | MS.gene85703 | 0.808245 | 3.41E-50 | -1.69E-46 |
| MS.gene054803 | MS.gene85703 | 0.809861 | 1.53E-50 | -1.69E-46 |
| MS.gene054804 | MS.gene85703 | 0.81008 | 1.38E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene85703 | 0.823563 | 1.29E-53 | -1.69E-46 |
| MS.gene054918 | MS.gene85703 | 0.820084 | 8.27E-53 | -1.69E-46 |
| MS.gene054927 | MS.gene85703 | 0.840625 | 7.77E-58 | -1.69E-46 |
| MS.gene05505 | MS.gene85703 | 0.841821 | 3.77E-58 | -1.69E-46 |
| MS.gene055116 | MS.gene85703 | 0.872709 | 2.58E-67 | -1.69E-46 |
| MS.gene055206 | MS.gene85703 | 0.807619 | 4.63E-50 | -1.69E-46 |
| MS.gene055277 | MS.gene85703 | 0.827596 | 1.43E-54 | -1.69E-46 |
| MS.gene055289 | MS.gene85703 | 0.829864 | 4.06E-55 | -1.69E-46 |
| MS.gene055369 | MS.gene85703 | 0.817175 | 3.78E-52 | -1.69E-46 |
| MS.gene055370 | MS.gene85703 | 0.807055 | 6.09E-50 | -1.69E-46 |
| MS.gene055412 | MS.gene85703 | 0.837269 | 5.74E-57 | -1.69E-46 |
| MS.gene055422 | MS.gene85703 | 0.813923 | 2.00E-51 | -1.69E-46 |
| MS.gene055428 | MS.gene85703 | 0.825916 | 3.61E-54 | -1.69E-46 |
| MS.gene055486 | MS.gene85703 | 0.807416 | 5.11E-50 | -1.69E-46 |
| MS.gene055499 | MS.gene85703 | 0.82502 | 5.89E-54 | -1.69E-46 |
| MS.gene05553 | MS.gene85703 | 0.821717 | 3.48E-53 | -1.69E-46 |
| MS.gene055647 | MS.gene85703 | 0.803246 | 3.82E-49 | -1.69E-46 |
| MS.gene05594 | MS.gene85703 | 0.802267 | 6.08E-49 | -1.69E-46 |
| MS.gene056083 | MS.gene85703 | 0.801472 | 8.86E-49 | -1.69E-46 |
| MS.gene056337 | MS.gene85703 | 0.813128 | 2.99E-51 | -1.69E-46 |
| MS.gene056407 | MS.gene85703 | 0.863472 | 2.43E-64 | -1.69E-46 |
| MS.gene056497 | MS.gene85703 | 0.83374 | 4.48E-56 | -1.69E-46 |
| MS.gene056511 | MS.gene85703 | 0.841864 | 3.67E-58 | -1.69E-46 |
| MS.gene056514 | MS.gene85703 | 0.807354 | 5.27E-50 | -1.69E-46 |
| MS.gene056609 | MS.gene85703 | 0.812833 | 3.47E-51 | -1.69E-46 |
| MS.gene056612 | MS.gene85703 | 0.81452 | 1.48E-51 | -1.69E-46 |
| MS.gene05664 | MS.gene85703 | 0.805314 | 1.42E-49 | -1.69E-46 |
| MS.gene056659 | MS.gene85703 | 0.82943 | 5.17E-55 | -1.69E-46 |
| MS.gene056796 | MS.gene85703 | 0.82102 | 5.04E-53 | -1.69E-46 |
| MS.gene056897 | MS.gene85703 | 0.801799 | 7.59E-49 | -1.69E-46 |
| MS.gene057011 | MS.gene85703 | 0.852348 | 4.90E-61 | -1.69E-46 |
| MS.gene05702 | MS.gene85703 | 0.865486 | 5.70E-65 | -1.69E-46 |
| MS.gene057048 | MS.gene85703 | 0.804718 | 1.89E-49 | -1.69E-46 |
| MS.gene057076 | MS.gene85703 | 0.803691 | 3.09E-49 | -1.69E-46 |
| MS.gene057123 | MS.gene85703 | 0.817479 | 3.23E-52 | -1.69E-46 |
| MS.gene057124 | MS.gene85703 | 0.87451 | 6.38E-68 | -1.69E-46 |
| MS.gene057129 | MS.gene85703 | 0.823694 | 1.21E-53 | -1.69E-46 |
| MS.gene057146 | MS.gene85703 | 0.8585 | 7.89E-63 | -1.69E-46 |
| MS.gene057207 | MS.gene85703 | 0.825428 | 4.71E-54 | -1.69E-46 |
| MS.gene057295 | MS.gene85703 | 0.804059 | 2.59E-49 | -1.69E-46 |
| MS.gene057310 | MS.gene85703 | 0.808778 | 2.62E-50 | -1.69E-46 |
| MS.gene05735 | MS.gene85703 | 0.803395 | 3.56E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene85703 | 0.850086 | 2.13E-60 | -1.69E-46 |
| MS.gene057658 | MS.gene85703 | 0.802058 | 6.72E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene85703 | 0.857938 | 1.16E-62 | -1.69E-46 |
| MS.gene057823 | MS.gene85703 | 0.857048 | 2.13E-62 | -1.69E-46 |
| MS.gene057825 | MS.gene85703 | 0.84463 | 6.71E-59 | -1.69E-46 |
| MS.gene058002 | MS.gene85703 | 0.823473 | 1.36E-53 | -1.69E-46 |
| MS.gene058007 | MS.gene85703 | 0.839388 | 1.63E-57 | -1.69E-46 |
| MS.gene058019 | MS.gene85703 | 0.861616 | 9.06E-64 | -1.69E-46 |
| MS.gene058082 | MS.gene85703 | 0.82654 | 2.57E-54 | -1.69E-46 |
| MS.gene058130 | MS.gene85703 | 0.807861 | 4.11E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene85703 | 0.812021 | 5.23E-51 | -1.69E-46 |
| MS.gene058233 | MS.gene85703 | 0.862938 | 3.56E-64 | -1.69E-46 |
| MS.gene058293 | MS.gene85703 | 0.836549 | 8.77E-57 | -1.69E-46 |
| MS.gene058365 | MS.gene85703 | 0.812501 | 4.11E-51 | -1.69E-46 |
| MS.gene058376 | MS.gene85703 | 0.82246 | 2.34E-53 | -1.69E-46 |
| MS.gene058444 | MS.gene85703 | 0.806733 | 7.13E-50 | -1.69E-46 |
| MS.gene058544 | MS.gene85703 | 0.805561 | 1.26E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene85703 | 0.866399 | 2.93E-65 | -1.69E-46 |
| MS.gene058700 | MS.gene85703 | 0.840147 | 1.04E-57 | -1.69E-46 |
| MS.gene058787 | MS.gene85703 | 0.810369 | 1.19E-50 | -1.69E-46 |
| MS.gene05883 | MS.gene85703 | 0.822665 | 2.10E-53 | -1.69E-46 |
| MS.gene05886 | MS.gene85703 | 0.850163 | 2.03E-60 | -1.69E-46 |
| MS.gene058928 | MS.gene85703 | 0.830431 | 2.95E-55 | -1.69E-46 |
| MS.gene058948 | MS.gene85703 | 0.809874 | 1.52E-50 | -1.69E-46 |
| MS.gene05907 | MS.gene85703 | 0.827949 | 1.18E-54 | -1.69E-46 |
| MS.gene059141 | MS.gene85703 | 0.833476 | 5.22E-56 | -1.69E-46 |
| MS.gene05934 | MS.gene85703 | 0.821487 | 3.93E-53 | -1.69E-46 |
| MS.gene059366 | MS.gene85703 | 0.800353 | 1.50E-48 | -1.69E-46 |
| MS.gene059420 | MS.gene85703 | 0.830962 | 2.18E-55 | -1.69E-46 |
| MS.gene059455 | MS.gene85703 | 0.808342 | 3.25E-50 | -1.69E-46 |
| MS.gene059536 | MS.gene85703 | 0.855548 | 5.86E-62 | -1.69E-46 |
| MS.gene059597 | MS.gene85703 | 0.848145 | 7.39E-60 | -1.69E-46 |
| MS.gene05959 | MS.gene85703 | 0.81335 | 2.68E-51 | -1.69E-46 |
| MS.gene059676 | MS.gene85703 | 0.855516 | 5.99E-62 | -1.69E-46 |
| MS.gene059688 | MS.gene85703 | 0.893118 | 8.46E-75 | -1.69E-46 |
| MS.gene059692 | MS.gene85703 | 0.880104 | 7.23E-70 | -1.69E-46 |
| MS.gene059695 | MS.gene85703 | 0.885868 | 5.61E-72 | -1.69E-46 |
| MS.gene059711 | MS.gene85703 | 0.80365 | 3.15E-49 | -1.69E-46 |
| MS.gene059718 | MS.gene85703 | 0.814177 | 1.76E-51 | -1.69E-46 |
| MS.gene059894 | MS.gene85703 | 0.803441 | 3.48E-49 | -1.69E-46 |
| MS.gene059960 | MS.gene85703 | 0.847097 | 1.43E-59 | -1.69E-46 |
| MS.gene060403 | MS.gene85703 | 0.861082 | 1.32E-63 | -1.69E-46 |
| MS.gene060407 | MS.gene85703 | 0.834295 | 3.26E-56 | -1.69E-46 |
| MS.gene060804 | MS.gene85703 | 0.846594 | 1.97E-59 | -1.69E-46 |
| MS.gene060818 | MS.gene85703 | 0.804214 | 2.40E-49 | -1.69E-46 |
| MS.gene060835 | MS.gene85703 | 0.832435 | 9.47E-56 | -1.69E-46 |
| MS.gene060837 | MS.gene85703 | 0.817754 | 2.80E-52 | -1.69E-46 |
| MS.gene06092 | MS.gene85703 | 0.834184 | 3.47E-56 | -1.69E-46 |
| MS.gene061041 | MS.gene85703 | 0.827506 | 1.51E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene85703 | 0.847195 | 1.35E-59 | -1.69E-46 |
| MS.gene061051 | MS.gene85703 | -0.829144 | 6.07E-55 | -1.69E-46 |
| MS.gene061154 | MS.gene85703 | 0.813864 | 2.06E-51 | -1.69E-46 |
| MS.gene061159 | MS.gene85703 | 0.804762 | 1.85E-49 | -1.69E-46 |
| MS.gene061200 | MS.gene85703 | 0.840521 | 8.27E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85703.t1 | MTR_6g037530 | 97.887 | 284 | 6 | 0 | 1 | 284 | 1 | 284 | 0.0 | 576 |
| MS.gene85703.t1 | MTR_6g037530 | 98.238 | 227 | 4 | 0 | 1 | 227 | 1 | 227 | 2.95e-165 | 459 |
| MS.gene85703.t1 | MTR_6g037560 | 82.000 | 50 | 9 | 0 | 178 | 227 | 31 | 80 | 1.14e-24 | 95.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85703.t1 | AT1G76730 | 67.235 | 293 | 82 | 3 | 6 | 284 | 2 | 294 | 1.90e-135 | 387 |
Find 72 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAATTGGTCGACCATATT+TGG | 0.146364 | 6.1:-17299223 | None:intergenic |
| AAAGTAGATCTTATTGTTAT+TGG | 0.152589 | 6.1:+17299261 | MS.gene85703:CDS |
| GTCAGATTTCTCACTCTTTC+AGG | 0.185200 | 6.1:+17298272 | MS.gene85703:CDS |
| ATATGGTATGTTGCGTTATA+TGG | 0.257841 | 6.1:+17300044 | MS.gene85703:CDS |
| GGGTGATTAGAAAGAGGATA+TGG | 0.270926 | 6.1:+17296589 | MS.gene85703:CDS |
| AGAGAAGCACCAACAAAATT+AGG | 0.289230 | 6.1:-17296669 | None:intergenic |
| ACTTGTTTCTGAGGAGAATC+TGG | 0.290978 | 6.1:-17298251 | None:intergenic |
| ATCACCCATTTCCAAGCTTT+CGG | 0.323242 | 6.1:-17296573 | None:intergenic |
| AAAGAGGATATGGGATTTGA+TGG | 0.331100 | 6.1:+17296599 | MS.gene85703:CDS |
| CCTAATCGAGCACCTGTGTT+CGG | 0.335307 | 6.1:-17299300 | None:intergenic |
| TGAGTCAAATATGTTAACTT+TGG | 0.344058 | 6.1:+17299164 | MS.gene85703:CDS |
| GAGTCAAATATGTTAACTTT+GGG | 0.360873 | 6.1:+17299165 | MS.gene85703:CDS |
| GGATTTGCAGAACTTGAATA+TGG | 0.362270 | 6.1:+17300027 | MS.gene85703:CDS |
| TGCTTCTCTTGCTGCTGATA+AGG | 0.366298 | 6.1:+17296683 | MS.gene85703:CDS |
| AACTTCCATTTCATTCAAAC+TGG | 0.367672 | 6.1:+17296419 | MS.gene85703:CDS |
| GCCAAATATGGTCGACCAAT+TGG | 0.376504 | 6.1:+17299222 | MS.gene85703:CDS |
| AGGAAGCCTGTACTTCTGTT+GGG | 0.384062 | 6.1:+17299196 | MS.gene85703:CDS |
| CTAATCGAGCACCTGTGTTC+GGG | 0.385036 | 6.1:-17299299 | None:intergenic |
| ATGATCCGAAAGCTTGGAAA+TGG | 0.388819 | 6.1:+17296568 | MS.gene85703:CDS |
| CTCGAAAGCGGCTTCATTGA+AGG | 0.403401 | 6.1:-17296472 | None:intergenic |
| GGCTTCCAGTTTGAATGAAA+TGG | 0.406006 | 6.1:-17296424 | None:intergenic |
| TCTGTTGGGGTTGCCAAATA+TGG | 0.406711 | 6.1:+17299210 | MS.gene85703:CDS |
| CTTCAATGAAGCCGCTTTCG+AGG | 0.408529 | 6.1:+17296473 | MS.gene85703:CDS |
| TTTGTTGTTGTTGCTGTTGG+TGG | 0.417134 | 6.1:-17296445 | None:intergenic |
| AGCTTTGTTGTTGTTGCTGT+TGG | 0.422102 | 6.1:-17296448 | None:intergenic |
| TTAGGAATCCTATGATGAAC+AGG | 0.427277 | 6.1:-17296651 | None:intergenic |
| CAATCAAAGAAGCTTGTAGA+AGG | 0.427514 | 6.1:-17300819 | None:intergenic |
| GTGGAGAGAGAGCGGTAAAG+AGG | 0.427620 | 6.1:-17296387 | None:intergenic |
| CCGAACACAGGTGCTCGATT+AGG | 0.445240 | 6.1:+17299300 | MS.gene85703:CDS |
| TAAAGAGGAGAGAGAGTGAA+TGG | 0.446819 | 6.1:-17296372 | None:intergenic |
| TGCAGGATGATCCGAAAGCT+TGG | 0.462695 | 6.1:+17296562 | MS.gene85703:CDS |
| CTGGAATGTCATCCACCAAT+TGG | 0.474668 | 6.1:-17300649 | None:intergenic |
| ATCCTAGACCTGTTCATCAT+AGG | 0.476390 | 6.1:+17296643 | MS.gene85703:CDS |
| AAATGGAAACACAAGCATTA+CGG | 0.488225 | 6.1:+17296340 | None:intergenic |
| GTTAACTTTGGGTACCATCA+AGG | 0.493467 | 6.1:+17299176 | MS.gene85703:CDS |
| AAGGAAGCCTGTACTTCTGT+TGG | 0.495849 | 6.1:+17299195 | MS.gene85703:CDS |
| TACAGTGCATGACTGCCAAT+TGG | 0.497413 | 6.1:+17300634 | MS.gene85703:intron |
| ATCCTATGATGAACAGGTCT+AGG | 0.500568 | 6.1:-17296645 | None:intergenic |
| AGAAGTACAGGCTTCCTTGA+TGG | 0.501762 | 6.1:-17299190 | None:intergenic |
| CGCAGAAGCACGTCGAGCAA+TGG | 0.511544 | 6.1:+17296515 | MS.gene85703:CDS |
| GGCAACCCCAACAGAAGTAC+AGG | 0.513556 | 6.1:-17299202 | None:intergenic |
| CCTCAACCACGGCTGAGGAC+AGG | 0.514670 | 6.1:+17299126 | MS.gene85703:CDS |
| TTGAATGAAATGGAAGTTTG+TGG | 0.520804 | 6.1:-17296414 | None:intergenic |
| AGGATATGGGATTTGATGGA+AGG | 0.523046 | 6.1:+17296603 | MS.gene85703:CDS |
| GGTGTACAAATGATATCTAC+TGG | 0.525049 | 6.1:-17300698 | None:intergenic |
| CCTGTCCTCAGCCGTGGTTG+AGG | 0.530300 | 6.1:-17299126 | None:intergenic |
| TATGGTATGTTGCGTTATAT+GGG | 0.539407 | 6.1:+17300045 | MS.gene85703:CDS |
| GGTGATTAGAAAGAGGATAT+GGG | 0.539605 | 6.1:+17296590 | MS.gene85703:CDS |
| GGATATGGGATTTGATGGAA+GGG | 0.547035 | 6.1:+17296604 | MS.gene85703:CDS |
| CAAAGAAGCTTGTAGAAGGA+AGG | 0.550268 | 6.1:-17300815 | None:intergenic |
| GGAAGCCTGTACTTCTGTTG+GGG | 0.552921 | 6.1:+17299197 | MS.gene85703:CDS |
| GAGCCGCTCCGCCTCGAAAG+CGG | 0.553425 | 6.1:-17296484 | None:intergenic |
| GGAGGAGAAATCTTCGATGC+AGG | 0.557726 | 6.1:+17296545 | MS.gene85703:CDS |
| TCAACACTAGTTGTTACCTC+AGG | 0.563225 | 6.1:+17300081 | MS.gene85703:CDS |
| TGATCCGAAAGCTTGGAAAT+GGG | 0.564177 | 6.1:+17296569 | MS.gene85703:CDS |
| CACAGGTGCTCGATTAGGAA+AGG | 0.564387 | 6.1:+17299305 | MS.gene85703:CDS |
| ACGTCGAGCAATGGCAGTTG+AGG | 0.564409 | 6.1:+17296524 | MS.gene85703:CDS |
| GGAAATGGGTGATTAGAAAG+AGG | 0.564862 | 6.1:+17296583 | MS.gene85703:CDS |
| TGATATCTACTGGTACATCA+TGG | 0.573249 | 6.1:-17300688 | None:intergenic |
| AGAAATCTGACTTGTTTCTG+AGG | 0.583571 | 6.1:-17298260 | None:intergenic |
| TATCATTTGTACACCAACTC+AGG | 0.586302 | 6.1:+17300706 | MS.gene85703:CDS |
| TAACTCCTCAACCACGGCTG+AGG | 0.589739 | 6.1:+17299121 | MS.gene85703:CDS |
| ACAGGTGCTCGATTAGGAAA+GGG | 0.589862 | 6.1:+17299306 | MS.gene85703:CDS |
| TGCTCGATTAGGAAAGGGAG+AGG | 0.600130 | 6.1:+17299311 | MS.gene85703:CDS |
| TCGAGCAATGGCAGTTGAGG+AGG | 0.600942 | 6.1:+17296527 | MS.gene85703:CDS |
| AGTGCATGACTGCCAATTGG+TGG | 0.605351 | 6.1:+17300637 | MS.gene85703:intron |
| GTCGCTGTTGACCCGAACAC+AGG | 0.615234 | 6.1:+17299288 | MS.gene85703:CDS |
| AAGCCGCTTTCGAGGCGGAG+CGG | 0.637651 | 6.1:+17296481 | MS.gene85703:CDS |
| CAATGAAGCCGCTTTCGAGG+CGG | 0.639135 | 6.1:+17296476 | MS.gene85703:CDS |
| CCGCGATGCACAATGTGTGA+AGG | 0.680082 | 6.1:+17298223 | MS.gene85703:CDS |
| CCTTCACACATTGTGCATCG+CGG | 0.691529 | 6.1:-17298223 | None:intergenic |
| AATTGTTAACTCCTCAACCA+CGG | 0.699483 | 6.1:+17299115 | MS.gene85703:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATATAGTTACAATAAA+AGG | - | chr6.1:17299892-17299911 | None:intergenic | 10.0% |
| !!! | AATATTTTAGTTTTTGAATT+TGG | - | chr6.1:17297314-17297333 | None:intergenic | 10.0% |
| !!! | ATATTTTAGTTTTTGAATTT+GGG | - | chr6.1:17297313-17297332 | None:intergenic | 10.0% |
| !!! | TATATTTTCAAGAATTTTTT+TGG | + | chr6.1:17297579-17297598 | MS.gene85703:intron | 10.0% |
| !! | ATAGTAAAGTAAAGTTAAAA+TGG | - | chr6.1:17298885-17298904 | None:intergenic | 15.0% |
| !! | TAATTTCTATGGTATAAAAT+AGG | - | chr6.1:17299631-17299650 | None:intergenic | 15.0% |
| !! | TGATTATGTAAAATTGATTA+TGG | + | chr6.1:17296984-17297003 | MS.gene85703:intron | 15.0% |
| !! | TTATTAGCATTATTAGATAT+AGG | + | chr6.1:17298425-17298444 | MS.gene85703:intron | 15.0% |
| !! | TTTATAATATTTAAACAAGC+AGG | - | chr6.1:17299811-17299830 | None:intergenic | 15.0% |
| !!! | AAATATTTCTCTTATTTACA+AGG | + | chr6.1:17300239-17300258 | MS.gene85703:intron | 15.0% |
| !!! | ACTCTTGATTTTTAAATTAA+TGG | + | chr6.1:17298629-17298648 | MS.gene85703:intron | 15.0% |
| !!! | TTGTTATAATCAATTTTGTT+AGG | + | chr6.1:17297272-17297291 | MS.gene85703:intron | 15.0% |
| !! | AAAGTAGATCTTATTGTTAT+TGG | + | chr6.1:17299261-17299280 | MS.gene85703:CDS | 20.0% |
| !! | AATTCTTGAAAATATAGTCA+TGG | - | chr6.1:17297575-17297594 | None:intergenic | 20.0% |
| !! | ACAAAATTTCTGTTACATAA+AGG | - | chr6.1:17298961-17298980 | None:intergenic | 20.0% |
| !! | ATAAGAATGAGTAATTTCTA+TGG | - | chr6.1:17299642-17299661 | None:intergenic | 20.0% |
| !! | CAAAATTTCTGTTACATAAA+GGG | - | chr6.1:17298960-17298979 | None:intergenic | 20.0% |
| !! | CTATTCTATACAATAACTAT+TGG | - | chr6.1:17299939-17299958 | None:intergenic | 20.0% |
| !! | GAATTGAATTACATGATTAA+AGG | + | chr6.1:17297529-17297548 | MS.gene85703:intron | 20.0% |
| !! | TGCTAATAAAAATCAAATTG+TGG | - | chr6.1:17298414-17298433 | None:intergenic | 20.0% |
| !!! | AGATTTTATATCATTTTTCG+TGG | + | chr6.1:17298843-17298862 | MS.gene85703:intron | 20.0% |
| !!! | CACAAATTTTGTTTTTGAAA+AGG | + | chr6.1:17300216-17300235 | MS.gene85703:intron | 20.0% |
| !!! | CTTTTCAAAAACAAAATTTG+TGG | - | chr6.1:17300218-17300237 | None:intergenic | 20.0% |
| ! | AATTACAGGAATAAGAGATT+AGG | + | chr6.1:17298590-17298609 | MS.gene85703:intron | 25.0% |
| ! | ACTCTTCTACCATAAAAATT+GGG | - | chr6.1:17300399-17300418 | None:intergenic | 25.0% |
| ! | AGATTACGAATCAAATTGAA+AGG | - | chr6.1:17297652-17297671 | None:intergenic | 25.0% |
| ! | ATAACCATAGGAAATGTAAA+AGG | - | chr6.1:17299349-17299368 | None:intergenic | 25.0% |
| ! | ATGTTCTAACAATCAAATTG+TGG | - | chr6.1:17298490-17298509 | None:intergenic | 25.0% |
| ! | CATAAACAATGATTAAAGCA+TGG | - | chr6.1:17300192-17300211 | None:intergenic | 25.0% |
| ! | GAGTCAAATATGTTAACTTT+GGG | + | chr6.1:17299165-17299184 | MS.gene85703:CDS | 25.0% |
| ! | GATTGATTAAACATAACCAT+AGG | - | chr6.1:17299361-17299380 | None:intergenic | 25.0% |
| ! | TATTATTTGCATTGAAGTTG+TGG | - | chr6.1:17297627-17297646 | None:intergenic | 25.0% |
| ! | TCAACATTAGATGTAACAAA+GGG | + | chr6.1:17297501-17297520 | MS.gene85703:intron | 25.0% |
| ! | TCTATAACTTTCATTTCAGT+TGG | - | chr6.1:17299002-17299021 | None:intergenic | 25.0% |
| ! | TGAGTCAAATATGTTAACTT+TGG | + | chr6.1:17299164-17299183 | MS.gene85703:CDS | 25.0% |
| ! | TTCAACATTAGATGTAACAA+AGG | + | chr6.1:17297500-17297519 | MS.gene85703:intron | 25.0% |
| ! | TTTACAACTTATAGCATGTT+TGG | - | chr6.1:17298824-17298843 | None:intergenic | 25.0% |
| ! | TTTAGAAACAAAAGTTTCCA+AGG | + | chr6.1:17298721-17298740 | MS.gene85703:intron | 25.0% |
| ! | TTTGTTACATCTAATGTTGA+AGG | - | chr6.1:17297501-17297520 | None:intergenic | 25.0% |
| !! | ATAGATGCCTTTTAGATTTA+TGG | + | chr6.1:17298903-17298922 | MS.gene85703:intron | 25.0% |
| !! | ATCTTTTCATCTAATCCAAT+TGG | - | chr6.1:17299240-17299259 | None:intergenic | 25.0% |
| !! | ATGTAACATTCAAGTTCATA+AGG | - | chr6.1:17299982-17300001 | None:intergenic | 25.0% |
| !! | CCAAGAAAAATTGAACTTTT+AGG | - | chr6.1:17299570-17299589 | None:intergenic | 25.0% |
| !! | CCTAAAAGTTCAATTTTTCT+TGG | + | chr6.1:17299567-17299586 | MS.gene85703:intron | 25.0% |
| !! | CTATTAAGTTGTAATTCTCT+CGG | + | chr6.1:17297999-17298018 | MS.gene85703:intron | 25.0% |
| !! | GTAAGATCTTTTCAATATGA+AGG | + | chr6.1:17298510-17298529 | MS.gene85703:intron | 25.0% |
| !! | GTTATCAAAATCTCATCTTT+TGG | + | chr6.1:17297403-17297422 | MS.gene85703:intron | 25.0% |
| !! | TTTTCCTGTTATTCATCAAA+AGG | + | chr6.1:17299389-17299408 | MS.gene85703:intron | 25.0% |
| !!! | AGAATTGATTCTAAGATGTT+TGG | - | chr6.1:17297119-17297138 | None:intergenic | 25.0% |
| !!! | TTTTTGGTGAAATTTTGGTA+GGG | + | chr6.1:17298108-17298127 | MS.gene85703:intron | 25.0% |
| !!! | TTTTTTGGTGAAATTTTGGT+AGG | + | chr6.1:17298107-17298126 | MS.gene85703:intron | 25.0% |
| AACAAGTCAACAATCACAAA+AGG | - | chr6.1:17298374-17298393 | None:intergenic | 30.0% | |
| AACAATGATTAAAGCATGGA+AGG | - | chr6.1:17300188-17300207 | None:intergenic | 30.0% | |
| AACTTCCATTTCATTCAAAC+TGG | + | chr6.1:17296419-17296438 | MS.gene85703:CDS | 30.0% | |
| AAGAACCAAAACAGGATTAA+AGG | - | chr6.1:17300502-17300521 | None:intergenic | 30.0% | |
| AATCAAACAAGAACCAAAAC+AGG | - | chr6.1:17300510-17300529 | None:intergenic | 30.0% | |
| AATGTTACATCAACTAAGAG+AGG | + | chr6.1:17299992-17300011 | MS.gene85703:intron | 30.0% | |
| AGTGAAATCTCTTCTTTACA+AGG | + | chr6.1:17300430-17300449 | MS.gene85703:intron | 30.0% | |
| ATATGGTATGTTGCGTTATA+TGG | + | chr6.1:17300044-17300063 | MS.gene85703:CDS | 30.0% | |
| ATCTAACACGTATGTGAAAT+CGG | + | chr6.1:17299495-17299514 | MS.gene85703:intron | 30.0% | |
| CTTAACAACACTATTGACAT+AGG | - | chr6.1:17299420-17299439 | None:intergenic | 30.0% | |
| GAAGTGTATGATACTTTCTT+AGG | - | chr6.1:17297788-17297807 | None:intergenic | 30.0% | |
| GAAGTTGTGGAGTATATTTA+AGG | - | chr6.1:17297614-17297633 | None:intergenic | 30.0% | |
| GACTCTTCTACCATAAAAAT+TGG | - | chr6.1:17300400-17300419 | None:intergenic | 30.0% | |
| GCAATCACCATAAATCTAAA+AGG | - | chr6.1:17298913-17298932 | None:intergenic | 30.0% | |
| GGTTAGATAGGTACTTTATT+TGG | + | chr6.1:17298293-17298312 | MS.gene85703:intron | 30.0% | |
| GTAGTATGATCATAAAACGT+AGG | - | chr6.1:17299697-17299716 | None:intergenic | 30.0% | |
| GTTTGTTCTGTTAGGTAATT+AGG | + | chr6.1:17298055-17298074 | MS.gene85703:intron | 30.0% | |
| TAGGAATTAATTGATGTGTG+TGG | + | chr6.1:17298168-17298187 | MS.gene85703:intron | 30.0% | |
| TAGGTTAAAAGACCAGTTTA+AGG | - | chr6.1:17299612-17299631 | None:intergenic | 30.0% | |
| TATGGTATGTTGCGTTATAT+GGG | + | chr6.1:17300045-17300064 | MS.gene85703:CDS | 30.0% | |
| TCAAGATCAAAATCCTACTT+AGG | - | chr6.1:17299736-17299755 | None:intergenic | 30.0% | |
| TTAGAGTTTAGGCGATAAAA+TGG | - | chr6.1:17297462-17297481 | None:intergenic | 30.0% | |
| TTCCTGTTAGTTATGAAATC+AGG | + | chr6.1:17297964-17297983 | MS.gene85703:intron | 30.0% | |
| TTGAATGAAATGGAAGTTTG+TGG | - | chr6.1:17296417-17296436 | None:intergenic | 30.0% | |
| TTTAGATTTATGGTGATTGC+TGG | + | chr6.1:17298913-17298932 | MS.gene85703:intron | 30.0% | |
| TTTGTAAAAATGACCTGAGT+TGG | - | chr6.1:17300722-17300741 | None:intergenic | 30.0% | |
| ! | CATAGGATTCCTAATTTTGT+TGG | + | chr6.1:17296660-17296679 | MS.gene85703:CDS | 30.0% |
| ! | CTTTATTTGGAGTTTGTGTA+TGG | + | chr6.1:17298306-17298325 | MS.gene85703:intron | 30.0% |
| ! | GGTTAAAAGTGATTTGTGTT+TGG | + | chr6.1:17297005-17297024 | MS.gene85703:intron | 30.0% |
| ! | TGATCCTTTTGATGAATAAC+AGG | - | chr6.1:17299396-17299415 | None:intergenic | 30.0% |
| ! | TTTTTATGGTAGAAGAGTCT+AGG | + | chr6.1:17300401-17300420 | MS.gene85703:intron | 30.0% |
| !! | AGAGGGACTATAATTGATTT+TGG | + | chr6.1:17296789-17296808 | MS.gene85703:intron | 30.0% |
| !! | TGTTACTTGTGATTTTGAGT+AGG | + | chr6.1:17298149-17298168 | MS.gene85703:intron | 30.0% |
| !!! | CGATTTTTTTCTTCTCGTTT+TGG | + | chr6.1:17299049-17299068 | MS.gene85703:intron | 30.0% |
| !!! | CGTCTTTTTTGGTGAAATTT+TGG | + | chr6.1:17298103-17298122 | MS.gene85703:intron | 30.0% |
| AAAACAGGATTAAAGGACAG+GGG | - | chr6.1:17300495-17300514 | None:intergenic | 35.0% | |
| AAAGAGGATATGGGATTTGA+TGG | + | chr6.1:17296599-17296618 | MS.gene85703:CDS | 35.0% | |
| AAATCCTACTTAGGATCATG+AGG | - | chr6.1:17299727-17299746 | None:intergenic | 35.0% | |
| AAGCGAATCACTCAATTTAG+AGG | + | chr6.1:17298676-17298695 | MS.gene85703:intron | 35.0% | |
| AATTGCTAAGATTGCGAGAT+TGG | + | chr6.1:17299529-17299548 | MS.gene85703:intron | 35.0% | |
| AATTGTTAACTCCTCAACCA+CGG | + | chr6.1:17299115-17299134 | MS.gene85703:CDS | 35.0% | |
| ACCAAAAAAGACGAATCAGA+AGG | - | chr6.1:17298096-17298115 | None:intergenic | 35.0% | |
| ACGATCAATATTTGTGCAGA+TGG | + | chr6.1:17299087-17299106 | MS.gene85703:intron | 35.0% | |
| AGACGAACCAGAATTGATTA+TGG | - | chr6.1:17297148-17297167 | None:intergenic | 35.0% | |
| AGTTTCTTCCTTCATACTGT+TGG | + | chr6.1:17297762-17297781 | MS.gene85703:intron | 35.0% | |
| ATAAAACACCAACAGAAACC+TGG | - | chr6.1:17297851-17297870 | None:intergenic | 35.0% | |
| ATCAAGAGTAGACACTTTAG+AGG | - | chr6.1:17298618-17298637 | None:intergenic | 35.0% | |
| ATGTTGAATTCCACTTCTAG+AGG | + | chr6.1:17296771-17296790 | MS.gene85703:intron | 35.0% | |
| CAAAACAGGATTAAAGGACA+GGG | - | chr6.1:17300496-17300515 | None:intergenic | 35.0% | |
| CAATCAAAGAAGCTTGTAGA+AGG | - | chr6.1:17300822-17300841 | None:intergenic | 35.0% | |
| CACTGCAAATGTTCTAATCA+CGG | - | chr6.1:17297934-17297953 | None:intergenic | 35.0% | |
| CAGCAACACAAAAGAATTAC+AGG | + | chr6.1:17298576-17298595 | MS.gene85703:intron | 35.0% | |
| GCTTGTGCGATATTAGATAT+TGG | - | chr6.1:17299842-17299861 | None:intergenic | 35.0% | |
| GGAAATAGCAGAAGAGTAAA+AGG | + | chr6.1:17298446-17298465 | MS.gene85703:intron | 35.0% | |
| GGATTTGCAGAACTTGAATA+TGG | + | chr6.1:17300027-17300046 | MS.gene85703:CDS | 35.0% | |
| GGTGATTAGAAAGAGGATAT+GGG | + | chr6.1:17296590-17296609 | MS.gene85703:CDS | 35.0% | |
| GGTGTACAAATGATATCTAC+TGG | - | chr6.1:17300701-17300720 | None:intergenic | 35.0% | |
| GTGAATGATGTTCAGTTAAC+CGG | - | chr6.1:17297711-17297730 | None:intergenic | 35.0% | |
| GTTTCTAAACACTCTTGTTC+TGG | - | chr6.1:17298710-17298729 | None:intergenic | 35.0% | |
| TACACCTCCATAATCAATTC+TGG | + | chr6.1:17297138-17297157 | MS.gene85703:intron | 35.0% | |
| TACTCATTCTTATGCAAGAC+CGG | + | chr6.1:17299649-17299668 | MS.gene85703:intron | 35.0% | |
| TATCATTTGTACACCAACTC+AGG | + | chr6.1:17300706-17300725 | MS.gene85703:CDS | 35.0% | |
| TCTCTTCTTTACAAGGACAA+CGG | + | chr6.1:17300437-17300456 | MS.gene85703:intron | 35.0% | |
| TGATATCTACTGGTACATCA+TGG | - | chr6.1:17300691-17300710 | None:intergenic | 35.0% | |
| TGCCTGATTTCATAACTAAC+AGG | - | chr6.1:17297969-17297988 | None:intergenic | 35.0% | |
| TGTTGAATTCCACTTCTAGA+GGG | + | chr6.1:17296772-17296791 | MS.gene85703:intron | 35.0% | |
| TTAGGAATCCTATGATGAAC+AGG | - | chr6.1:17296654-17296673 | None:intergenic | 35.0% | |
| TTCTACCATAAAAATTGGGC+TGG | - | chr6.1:17300395-17300414 | None:intergenic | 35.0% | |
| TTTATGTTTGTGCGTGTGTT+TGG | + | chr6.1:17296928-17296947 | MS.gene85703:intron | 35.0% | |
| ! | AACGCCTTTTACATTTCCTA+TGG | + | chr6.1:17299342-17299361 | MS.gene85703:intron | 35.0% |
| ! | AATTATAGTCCCTCTAGAAG+TGG | - | chr6.1:17296784-17296803 | None:intergenic | 35.0% |
| ! | GAAATTTTTCACCAACCTTG+AGG | - | chr6.1:17300761-17300780 | None:intergenic | 35.0% |
| ! | GTGGATTTTTATGCAGATGA+GGG | + | chr6.1:17298187-17298206 | MS.gene85703:intron | 35.0% |
| ! | GTTGTTACCTCAGGTAATTT+TGG | + | chr6.1:17300090-17300109 | MS.gene85703:intron | 35.0% |
| ! | TGGATTAACAGCTTTTCAAC+TGG | - | chr6.1:17300671-17300690 | None:intergenic | 35.0% |
| ! | TGTGGATTTTTATGCAGATG+AGG | + | chr6.1:17298186-17298205 | MS.gene85703:intron | 35.0% |
| ! | TGTTGTTTACAGAAAGTGAC+TGG | + | chr6.1:17300368-17300387 | MS.gene85703:intron | 35.0% |
| !! | AATGGAAGTTTGTGGTTTTG+TGG | - | chr6.1:17296409-17296428 | None:intergenic | 35.0% |
| !! | AATTCTGGTTCGTCTAAAAG+TGG | + | chr6.1:17297153-17297172 | MS.gene85703:intron | 35.0% |
| !! | AGAAATCTGACTTGTTTCTG+AGG | - | chr6.1:17298263-17298282 | None:intergenic | 35.0% |
| !! | AGAATTGGTTCTGACATGTT+TGG | + | chr6.1:17296818-17296837 | MS.gene85703:intron | 35.0% |
| !! | AGAGAAGCACCAACAAAATT+AGG | - | chr6.1:17296672-17296691 | None:intergenic | 35.0% |
| !! | AGCATGTTTGGAATTGCTTT+TGG | - | chr6.1:17298812-17298831 | None:intergenic | 35.0% |
| !! | ATGTTTGGAATTGCTTTTGG+AGG | - | chr6.1:17298809-17298828 | None:intergenic | 35.0% |
| !! | GAAGGTATCTATGACTATGA+TGG | + | chr6.1:17298528-17298547 | MS.gene85703:intron | 35.0% |
| !! | GGGACTATAATTGATTTTGG+AGG | + | chr6.1:17296792-17296811 | MS.gene85703:intron | 35.0% |
| !! | TGATTTTGGAGGTGTAGAAT+TGG | + | chr6.1:17296803-17296822 | MS.gene85703:intron | 35.0% |
| !!! | TCCTTCTGATTCGTCTTTTT+TGG | + | chr6.1:17298092-17298111 | MS.gene85703:intron | 35.0% |
| AGGATATGGGATTTGATGGA+AGG | + | chr6.1:17296603-17296622 | MS.gene85703:CDS | 40.0% | |
| ATCACCCATTTCCAAGCTTT+CGG | - | chr6.1:17296576-17296595 | None:intergenic | 40.0% | |
| ATCACTCAATTTAGAGGAGC+CGG | + | chr6.1:17298682-17298701 | MS.gene85703:intron | 40.0% | |
| ATCCTAGACCTGTTCATCAT+AGG | + | chr6.1:17296643-17296662 | MS.gene85703:CDS | 40.0% | |
| ATCCTATGATGAACAGGTCT+AGG | - | chr6.1:17296648-17296667 | None:intergenic | 40.0% | |
| ATGATCCGAAAGCTTGGAAA+TGG | + | chr6.1:17296568-17296587 | MS.gene85703:CDS | 40.0% | |
| CAAAGAAGCTTGTAGAAGGA+AGG | - | chr6.1:17300818-17300837 | None:intergenic | 40.0% | |
| CCAAAACAGGATTAAAGGAC+AGG | - | chr6.1:17300497-17300516 | None:intergenic | 40.0% | |
| CGAACCAGAATTGATTATGG+AGG | - | chr6.1:17297145-17297164 | None:intergenic | 40.0% | |
| CGAATCAGAAGGAAGCTTAT+AGG | - | chr6.1:17298085-17298104 | None:intergenic | 40.0% | |
| CGTGATTAGAACATTTGCAG+TGG | + | chr6.1:17297932-17297951 | MS.gene85703:intron | 40.0% | |
| CTTTACAAGGACAACGGAAA+CGG | + | chr6.1:17300443-17300462 | MS.gene85703:intron | 40.0% | |
| GCAAGAACCAAAATTACCTG+AGG | - | chr6.1:17300100-17300119 | None:intergenic | 40.0% | |
| GGAAATGGGTGATTAGAAAG+AGG | + | chr6.1:17296583-17296602 | MS.gene85703:CDS | 40.0% | |
| GGATATGGGATTTGATGGAA+GGG | + | chr6.1:17296604-17296623 | MS.gene85703:CDS | 40.0% | |
| GGCTTCCAGTTTGAATGAAA+TGG | - | chr6.1:17296427-17296446 | None:intergenic | 40.0% | |
| GGGTGATTAGAAAGAGGATA+TGG | + | chr6.1:17296589-17296608 | MS.gene85703:CDS | 40.0% | |
| GTCAGATTTCTCACTCTTTC+AGG | + | chr6.1:17298272-17298291 | MS.gene85703:CDS | 40.0% | |
| GTTAACTTTGGGTACCATCA+AGG | + | chr6.1:17299176-17299195 | MS.gene85703:CDS | 40.0% | |
| TAAAGAGGAGAGAGAGTGAA+TGG | - | chr6.1:17296375-17296394 | None:intergenic | 40.0% | |
| TAAAGGACAGGGGAAGATAT+CGG | - | chr6.1:17300485-17300504 | None:intergenic | 40.0% | |
| TAAGAGAGGATTGAAGTGCA+GGG | + | chr6.1:17300006-17300025 | MS.gene85703:intron | 40.0% | |
| TACTTAGGATCATGAGGAAG+AGG | - | chr6.1:17299721-17299740 | None:intergenic | 40.0% | |
| TCAACACTAGTTGTTACCTC+AGG | + | chr6.1:17300081-17300100 | MS.gene85703:CDS | 40.0% | |
| TCAGAGAACTCTTCATCTTG+AGG | - | chr6.1:17298771-17298790 | None:intergenic | 40.0% | |
| TCCAATTGGTCGACCATATT+TGG | - | chr6.1:17299226-17299245 | None:intergenic | 40.0% | |
| TCCAGTCACTCTAATGTGTT+CGG | + | chr6.1:17297806-17297825 | MS.gene85703:intron | 40.0% | |
| TCGTCACTGTTTGTTCTGTT+AGG | + | chr6.1:17298047-17298066 | MS.gene85703:intron | 40.0% | |
| TCTTCCTCATGATCCTAAGT+AGG | + | chr6.1:17299720-17299739 | MS.gene85703:intron | 40.0% | |
| TGATCCGAAAGCTTGGAAAT+GGG | + | chr6.1:17296569-17296588 | MS.gene85703:CDS | 40.0% | |
| TTCTTAGGCCAACAGTATGA+AGG | - | chr6.1:17297773-17297792 | None:intergenic | 40.0% | |
| TTTACGAACTTACAGCCACT+GGG | + | chr6.1:17299470-17299489 | MS.gene85703:intron | 40.0% | |
| TTTCCTTAGCCATTCCTCAA+AGG | + | chr6.1:17300130-17300149 | MS.gene85703:intron | 40.0% | |
| TTTGGAGGATGCTGAACATT+TGG | - | chr6.1:17298794-17298813 | None:intergenic | 40.0% | |
| ! | AAACACTCTTGTTCTGGATC+CGG | - | chr6.1:17298704-17298723 | None:intergenic | 40.0% |
| ! | ACATCTTTGAGAAGCCTTTG+AGG | - | chr6.1:17300147-17300166 | None:intergenic | 40.0% |
| ! | ACGGATTACGCTTAACAATC+TGG | - | chr6.1:17297915-17297934 | None:intergenic | 40.0% |
| ! | CCTGTCCTTTAATCCTGTTT+TGG | + | chr6.1:17300494-17300513 | MS.gene85703:intron | 40.0% |
| ! | CGCTAATCGATTCCTTAAAC+TGG | + | chr6.1:17299597-17299616 | MS.gene85703:intron | 40.0% |
| ! | GATGTTTGGTTGTTGTTGAG+TGG | - | chr6.1:17297105-17297124 | None:intergenic | 40.0% |
| ! | GGGAAGATATCGGAACATTT+TGG | - | chr6.1:17300475-17300494 | None:intergenic | 40.0% |
| ! | GTAACAAGCATCGTAAGATC+CGG | - | chr6.1:17299671-17299690 | None:intergenic | 40.0% |
| ! | GTCGAGTAGAATTGATTCTG+CGG | + | chr6.1:17296846-17296865 | MS.gene85703:intron | 40.0% |
| ! | TTTGAGAAGCCTTTGAGGAA+TGG | - | chr6.1:17300142-17300161 | None:intergenic | 40.0% |
| ! | TTTGTGTATGGTGTTGAGCA+GGG | + | chr6.1:17298318-17298337 | MS.gene85703:intron | 40.0% |
| ! | TTTTACGAACTTACAGCCAC+TGG | + | chr6.1:17299469-17299488 | MS.gene85703:intron | 40.0% |
| !! | ACTTGTTTCTGAGGAGAATC+TGG | - | chr6.1:17298254-17298273 | None:intergenic | 40.0% |
| !! | AGCTCTGCACTTTAGAGTTT+AGG | - | chr6.1:17297473-17297492 | None:intergenic | 40.0% |
| !! | AGCTTTGTTGTTGTTGCTGT+TGG | - | chr6.1:17296451-17296470 | None:intergenic | 40.0% |
| !! | CTCACTCTTTCAGGTTAGAT+AGG | + | chr6.1:17298281-17298300 | MS.gene85703:intron | 40.0% |
| !! | TGAAGTATTGACACCAAACC+AGG | + | chr6.1:17297830-17297849 | MS.gene85703:intron | 40.0% |
| !! | TTTGTTGTTGTTGCTGTTGG+TGG | - | chr6.1:17296448-17296467 | None:intergenic | 40.0% |
| AAGGAAGCCTGTACTTCTGT+TGG | + | chr6.1:17299195-17299214 | MS.gene85703:CDS | 45.0% | |
| ACACCAAACCAGGTTTCTGT+TGG | + | chr6.1:17297840-17297859 | MS.gene85703:intron | 45.0% | |
| ACACCAACAGAAACCTGGTT+TGG | - | chr6.1:17297846-17297865 | None:intergenic | 45.0% | |
| ACAGGTGCTCGATTAGGAAA+GGG | + | chr6.1:17299306-17299325 | MS.gene85703:CDS | 45.0% | |
| ACATCCATTCCAAAGCCTCA+AGG | + | chr6.1:17300743-17300762 | MS.gene85703:intron | 45.0% | |
| ACGCTTAACAATCTGGACTC+TGG | - | chr6.1:17297908-17297927 | None:intergenic | 45.0% | |
| AGGAAGCCTGTACTTCTGTT+GGG | + | chr6.1:17299196-17299215 | MS.gene85703:CDS | 45.0% | |
| AGGGTCTAGTCTAATACAGC+AGG | - | chr6.1:17298941-17298960 | None:intergenic | 45.0% | |
| CGTGAAACAAGACTCAGTGT+CGG | - | chr6.1:17299868-17299887 | None:intergenic | 45.0% | |
| CTAAGAGAGGATTGAAGTGC+AGG | + | chr6.1:17300005-17300024 | MS.gene85703:intron | 45.0% | |
| CTGGAATGTCATCCACCAAT+TGG | - | chr6.1:17300652-17300671 | None:intergenic | 45.0% | |
| CTGGTTAGAAAAGTCTGCCT+CGG | + | chr6.1:17299773-17299792 | MS.gene85703:intron | 45.0% | |
| GAGAACATTGTCTGTGATCC+TGG | + | chr6.1:17299754-17299773 | MS.gene85703:intron | 45.0% | |
| GATTCTGCGGTGACAGAAAT+TGG | + | chr6.1:17296859-17296878 | MS.gene85703:intron | 45.0% | |
| GCCAAATATGGTCGACCAAT+TGG | + | chr6.1:17299222-17299241 | MS.gene85703:CDS | 45.0% | |
| TACAGTGCATGACTGCCAAT+TGG | + | chr6.1:17300634-17300653 | MS.gene85703:intron | 45.0% | |
| TCTGTTGGGGTTGCCAAATA+TGG | + | chr6.1:17299210-17299229 | MS.gene85703:CDS | 45.0% | |
| TGCTTCTCTTGCTGCTGATA+AGG | + | chr6.1:17296683-17296702 | MS.gene85703:CDS | 45.0% | |
| TTTCACCAACCTTGAGGCTT+TGG | - | chr6.1:17300755-17300774 | None:intergenic | 45.0% | |
| ! | AAGCCTTTGAGGAATGGCTA+AGG | - | chr6.1:17300136-17300155 | None:intergenic | 45.0% |
| ! | AGAAGTACAGGCTTCCTTGA+TGG | - | chr6.1:17299193-17299212 | None:intergenic | 45.0% |
| ! | CTGGTCCAGCCCAATTTTTA+TGG | + | chr6.1:17300387-17300406 | MS.gene85703:intron | 45.0% |
| ! | GTTTGTGTATGGTGTTGAGC+AGG | + | chr6.1:17298317-17298336 | MS.gene85703:intron | 45.0% |
| !! | AATTTTGGTAGGGCGTGGAA+TGG | + | chr6.1:17298118-17298137 | MS.gene85703:intron | 45.0% |
| !! | ATTTTGGTAGGGCGTGGAAT+GGG | + | chr6.1:17298119-17298138 | MS.gene85703:intron | 45.0% |
| !! | CGACACTGAGTCTTGTTTCA+CGG | + | chr6.1:17299866-17299885 | MS.gene85703:intron | 45.0% |
| !!! | ATATGTAAAAATTATTATTT+TGG | + | chr6.1:17300312-17300331 | MS.gene85703:intron | 5.0% |
| AAAAAACCTGTCCTCAGCCG+TGG | - | chr6.1:17299135-17299154 | None:intergenic | 50.0% | |
| AGTGCATGACTGCCAATTGG+TGG | + | chr6.1:17300637-17300656 | MS.gene85703:intron | 50.0% | |
| ATACGTGTTAGATCGCCCAG+TGG | - | chr6.1:17299488-17299507 | None:intergenic | 50.0% | |
| CACAGGTGCTCGATTAGGAA+AGG | + | chr6.1:17299305-17299324 | MS.gene85703:CDS | 50.0% | |
| CCATTCCAAAGCCTCAAGGT+TGG | + | chr6.1:17300747-17300766 | MS.gene85703:intron | 50.0% | |
| CCTAATCGAGCACCTGTGTT+CGG | - | chr6.1:17299303-17299322 | None:intergenic | 50.0% | |
| CCTTCACACATTGTGCATCG+CGG | - | chr6.1:17298226-17298245 | None:intergenic | 50.0% | |
| CTAATCGAGCACCTGTGTTC+GGG | - | chr6.1:17299302-17299321 | None:intergenic | 50.0% | |
| CTCGAAAGCGGCTTCATTGA+AGG | - | chr6.1:17296475-17296494 | None:intergenic | 50.0% | |
| GCCGAACACATTAGAGTGAC+TGG | - | chr6.1:17297810-17297829 | None:intergenic | 50.0% | |
| GGAAGCCTGTACTTCTGTTG+GGG | + | chr6.1:17299197-17299216 | MS.gene85703:CDS | 50.0% | |
| GGAGGAGAAATCTTCGATGC+AGG | + | chr6.1:17296545-17296564 | MS.gene85703:CDS | 50.0% | |
| TGCAGGATGATCCGAAAGCT+TGG | + | chr6.1:17296562-17296581 | MS.gene85703:CDS | 50.0% | |
| TGCTCGATTAGGAAAGGGAG+AGG | + | chr6.1:17299311-17299330 | MS.gene85703:CDS | 50.0% | |
| ! | CGAGGCAGACTTTTCTAACC+AGG | - | chr6.1:17299775-17299794 | None:intergenic | 50.0% |
| ! | CTTCAATGAAGCCGCTTTCG+AGG | + | chr6.1:17296473-17296492 | MS.gene85703:CDS | 50.0% |
| ! | TGTATGGTGTTGAGCAGGGA+GGG | + | chr6.1:17298322-17298341 | MS.gene85703:intron | 50.0% |
| !! | CCAACCTTGAGGCTTTGGAA+TGG | - | chr6.1:17300750-17300769 | None:intergenic | 50.0% |
| !! | GGTGAAATTTTGGTAGGGCG+TGG | + | chr6.1:17298113-17298132 | MS.gene85703:intron | 50.0% |
| !!! | GTGGTTTTGTGGAGAGAGAG+CGG | - | chr6.1:17296398-17296417 | None:intergenic | 50.0% |
| ACGTCGAGCAATGGCAGTTG+AGG | + | chr6.1:17296524-17296543 | MS.gene85703:CDS | 55.0% | |
| CCGAACACAGGTGCTCGATT+AGG | + | chr6.1:17299300-17299319 | MS.gene85703:CDS | 55.0% | |
| CCGCGATGCACAATGTGTGA+AGG | + | chr6.1:17298223-17298242 | MS.gene85703:CDS | 55.0% | |
| CGGCGACAGTGCAGAACTTA+CGG | - | chr6.1:17297691-17297710 | None:intergenic | 55.0% | |
| CGTAAGTTCTGCACTGTCGC+CGG | + | chr6.1:17297689-17297708 | MS.gene85703:intron | 55.0% | |
| GACAGCTCAAGCTGAGGCAA+AGG | + | chr6.1:17298745-17298764 | MS.gene85703:intron | 55.0% | |
| GCGTGTGTTTGGTTGTGTGC+TGG | + | chr6.1:17296939-17296958 | MS.gene85703:intron | 55.0% | |
| GTGGAGAGAGAGCGGTAAAG+AGG | - | chr6.1:17296390-17296409 | None:intergenic | 55.0% | |
| TAACTCCTCAACCACGGCTG+AGG | + | chr6.1:17299121-17299140 | MS.gene85703:CDS | 55.0% | |
| TCGAGCAATGGCAGTTGAGG+AGG | + | chr6.1:17296527-17296546 | MS.gene85703:CDS | 55.0% | |
| ! | CAATGAAGCCGCTTTCGAGG+CGG | + | chr6.1:17296476-17296495 | MS.gene85703:CDS | 55.0% |
| ! | GGCAACCCCAACAGAAGTAC+AGG | - | chr6.1:17299205-17299224 | None:intergenic | 55.0% |
| ! | GTATGGTGTTGAGCAGGGAG+GGG | + | chr6.1:17298323-17298342 | MS.gene85703:intron | 55.0% |
| ! | GTGTATGGTGTTGAGCAGGG+AGG | + | chr6.1:17298321-17298340 | MS.gene85703:intron | 55.0% |
| ! | TATGGTGTTGAGCAGGGAGG+GGG | + | chr6.1:17298324-17298343 | MS.gene85703:intron | 55.0% |
| CAAGGCGACAGCTCAAGCTG+AGG | + | chr6.1:17298739-17298758 | MS.gene85703:intron | 60.0% | |
| CTCAGCTTGAGCTGTCGCCT+TGG | - | chr6.1:17298741-17298760 | None:intergenic | 60.0% | |
| GTCGCTGTTGACCCGAACAC+AGG | + | chr6.1:17299288-17299307 | MS.gene85703:CDS | 60.0% | |
| ! | CGCAGAAGCACGTCGAGCAA+TGG | + | chr6.1:17296515-17296534 | MS.gene85703:CDS | 60.0% |
| CCTCAACCACGGCTGAGGAC+AGG | + | chr6.1:17299126-17299145 | MS.gene85703:CDS | 65.0% | |
| CCTGTCCTCAGCCGTGGTTG+AGG | - | chr6.1:17299129-17299148 | None:intergenic | 65.0% | |
| GCAGGTGAAACAGCGTGCCG+AGG | - | chr6.1:17299793-17299812 | None:intergenic | 65.0% | |
| GTGTTGAGCAGGGAGGGGGA+AGG | + | chr6.1:17298328-17298347 | MS.gene85703:intron | 65.0% | |
| ! | AAGCCGCTTTCGAGGCGGAG+CGG | + | chr6.1:17296481-17296500 | MS.gene85703:CDS | 65.0% |
| GAGCCGCTCCGCCTCGAAAG+CGG | - | chr6.1:17296487-17296506 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 17296342 | 17300860 | 17296342 | ID=MS.gene85703 |
| chr6.1 | mRNA | 17296342 | 17300860 | 17296342 | ID=MS.gene85703.t1;Parent=MS.gene85703 |
| chr6.1 | exon | 17296342 | 17296704 | 17296342 | ID=MS.gene85703.t1.exon1;Parent=MS.gene85703.t1 |
| chr6.1 | CDS | 17296342 | 17296704 | 17296342 | ID=cds.MS.gene85703.t1;Parent=MS.gene85703.t1 |
| chr6.1 | exon | 17298203 | 17298293 | 17298203 | ID=MS.gene85703.t1.exon2;Parent=MS.gene85703.t1 |
| chr6.1 | CDS | 17298203 | 17298293 | 17298203 | ID=cds.MS.gene85703.t1;Parent=MS.gene85703.t1 |
| chr6.1 | exon | 17299106 | 17299332 | 17299106 | ID=MS.gene85703.t1.exon3;Parent=MS.gene85703.t1 |
| chr6.1 | CDS | 17299106 | 17299332 | 17299106 | ID=cds.MS.gene85703.t1;Parent=MS.gene85703.t1 |
| chr6.1 | exon | 17300027 | 17300102 | 17300027 | ID=MS.gene85703.t1.exon4;Parent=MS.gene85703.t1 |
| chr6.1 | CDS | 17300027 | 17300102 | 17300027 | ID=cds.MS.gene85703.t1;Parent=MS.gene85703.t1 |
| chr6.1 | exon | 17300639 | 17300727 | 17300639 | ID=MS.gene85703.t1.exon5;Parent=MS.gene85703.t1 |
| chr6.1 | CDS | 17300639 | 17300727 | 17300639 | ID=cds.MS.gene85703.t1;Parent=MS.gene85703.t1 |
| chr6.1 | exon | 17300813 | 17300860 | 17300813 | ID=MS.gene85703.t1.exon6;Parent=MS.gene85703.t1 |
| chr6.1 | CDS | 17300813 | 17300860 | 17300813 | ID=cds.MS.gene85703.t1;Parent=MS.gene85703.t1 |
| Gene Sequence |
| Protein sequence |
