Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96945.t1 | XP_013467179.1 | 84.7 | 365 | 38 | 2 | 1 | 347 | 1 | 365 | 2.80E-155 | 558.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96945.t1 | Q9T0H9 | 68.7 | 335 | 100 | 3 | 18 | 347 | 25 | 359 | 3.6e-111 | 402.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96945.t1 | A0A072VSW1 | 84.7 | 365 | 38 | 2 | 1 | 347 | 1 | 365 | 2.0e-155 | 558.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene96945 | 0.81459 | 1.43E-51 | -1.69E-46 |
| MS.gene049153 | MS.gene96945 | 0.802143 | 6.45E-49 | -1.69E-46 |
| MS.gene049284 | MS.gene96945 | 0.820765 | 5.77E-53 | -1.69E-46 |
| MS.gene049351 | MS.gene96945 | 0.840516 | 8.30E-58 | -1.69E-46 |
| MS.gene049427 | MS.gene96945 | 0.855179 | 7.51E-62 | -1.69E-46 |
| MS.gene049488 | MS.gene96945 | 0.803351 | 3.63E-49 | -1.69E-46 |
| MS.gene049491 | MS.gene96945 | 0.825787 | 3.88E-54 | -1.69E-46 |
| MS.gene049661 | MS.gene96945 | 0.807544 | 4.80E-50 | -1.69E-46 |
| MS.gene049662 | MS.gene96945 | 0.807206 | 5.66E-50 | -1.69E-46 |
| MS.gene049758 | MS.gene96945 | 0.82522 | 5.28E-54 | -1.69E-46 |
| MS.gene049805 | MS.gene96945 | 0.81431 | 1.64E-51 | -1.69E-46 |
| MS.gene049910 | MS.gene96945 | 0.827401 | 1.60E-54 | -1.69E-46 |
| MS.gene050076 | MS.gene96945 | 0.81375 | 2.19E-51 | -1.69E-46 |
| MS.gene050099 | MS.gene96945 | 0.806205 | 9.21E-50 | -1.69E-46 |
| MS.gene050231 | MS.gene96945 | 0.815154 | 1.07E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene96945 | 0.881418 | 2.44E-70 | -1.69E-46 |
| MS.gene050397 | MS.gene96945 | 0.855863 | 4.74E-62 | -1.69E-46 |
| MS.gene050400 | MS.gene96945 | 0.829786 | 4.24E-55 | -1.69E-46 |
| MS.gene050406 | MS.gene96945 | 0.814802 | 1.28E-51 | -1.69E-46 |
| MS.gene050426 | MS.gene96945 | -0.839393 | 1.63E-57 | -1.69E-46 |
| MS.gene050432 | MS.gene96945 | 0.811982 | 5.33E-51 | -1.69E-46 |
| MS.gene050464 | MS.gene96945 | 0.87338 | 1.54E-67 | -1.69E-46 |
| MS.gene050529 | MS.gene96945 | 0.868913 | 4.58E-66 | -1.69E-46 |
| MS.gene050558 | MS.gene96945 | 0.801797 | 7.60E-49 | -1.69E-46 |
| MS.gene050593 | MS.gene96945 | 0.824319 | 8.61E-54 | -1.69E-46 |
| MS.gene050650 | MS.gene96945 | 0.804116 | 2.52E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene96945 | 0.880695 | 4.44E-70 | -1.69E-46 |
| MS.gene050812 | MS.gene96945 | 0.855457 | 6.23E-62 | -1.69E-46 |
| MS.gene05101 | MS.gene96945 | 0.866058 | 3.76E-65 | -1.69E-46 |
| MS.gene05105 | MS.gene96945 | 0.833768 | 4.41E-56 | -1.69E-46 |
| MS.gene051387 | MS.gene96945 | 0.871138 | 8.59E-67 | -1.69E-46 |
| MS.gene051471 | MS.gene96945 | 0.83288 | 7.34E-56 | -1.69E-46 |
| MS.gene051525 | MS.gene96945 | 0.880142 | 7.00E-70 | -1.69E-46 |
| MS.gene051582 | MS.gene96945 | 0.882062 | 1.43E-70 | -1.69E-46 |
| MS.gene051663 | MS.gene96945 | 0.806896 | 6.58E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene96945 | 0.820885 | 5.41E-53 | -1.69E-46 |
| MS.gene051692 | MS.gene96945 | 0.806462 | 8.13E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene96945 | 0.84115 | 5.66E-58 | -1.69E-46 |
| MS.gene051983 | MS.gene96945 | 0.806871 | 6.66E-50 | -1.69E-46 |
| MS.gene052011 | MS.gene96945 | -0.844555 | 7.03E-59 | -1.69E-46 |
| MS.gene052077 | MS.gene96945 | 0.828473 | 8.82E-55 | -1.69E-46 |
| MS.gene052078 | MS.gene96945 | 0.845315 | 4.39E-59 | -1.69E-46 |
| MS.gene052128 | MS.gene96945 | -0.828344 | 9.47E-55 | -1.69E-46 |
| MS.gene052135 | MS.gene96945 | 0.803617 | 3.20E-49 | -1.69E-46 |
| MS.gene052178 | MS.gene96945 | 0.816391 | 5.67E-52 | -1.69E-46 |
| MS.gene052188 | MS.gene96945 | 0.873841 | 1.08E-67 | -1.69E-46 |
| MS.gene052253 | MS.gene96945 | 0.874361 | 7.17E-68 | -1.69E-46 |
| MS.gene052310 | MS.gene96945 | 0.89973 | 1.48E-77 | -1.69E-46 |
| MS.gene052322 | MS.gene96945 | 0.84865 | 5.35E-60 | -1.69E-46 |
| MS.gene052326 | MS.gene96945 | 0.804535 | 2.06E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene96945 | 0.881628 | 2.05E-70 | -1.69E-46 |
| MS.gene052421 | MS.gene96945 | 0.813172 | 2.93E-51 | -1.69E-46 |
| MS.gene052481 | MS.gene96945 | 0.871022 | 9.38E-67 | -1.69E-46 |
| MS.gene052484 | MS.gene96945 | 0.820061 | 8.37E-53 | -1.69E-46 |
| MS.gene052485 | MS.gene96945 | 0.874029 | 9.29E-68 | -1.69E-46 |
| MS.gene052982 | MS.gene96945 | 0.815712 | 8.03E-52 | -1.69E-46 |
| MS.gene053103 | MS.gene96945 | 0.841813 | 3.78E-58 | -1.69E-46 |
| MS.gene053104 | MS.gene96945 | 0.800155 | 1.65E-48 | -1.69E-46 |
| MS.gene053107 | MS.gene96945 | 0.819542 | 1.10E-52 | -1.69E-46 |
| MS.gene053169 | MS.gene96945 | 0.804581 | 2.02E-49 | -1.69E-46 |
| MS.gene053209 | MS.gene96945 | 0.800872 | 1.18E-48 | -1.69E-46 |
| MS.gene053322 | MS.gene96945 | 0.803191 | 3.92E-49 | -1.69E-46 |
| MS.gene053449 | MS.gene96945 | 0.806065 | 9.86E-50 | -1.69E-46 |
| MS.gene053557 | MS.gene96945 | 0.847331 | 1.24E-59 | -1.69E-46 |
| MS.gene053579 | MS.gene96945 | 0.805688 | 1.18E-49 | -1.69E-46 |
| MS.gene053758 | MS.gene96945 | 0.80418 | 2.44E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene96945 | 0.869233 | 3.61E-66 | -1.69E-46 |
| MS.gene053928 | MS.gene96945 | 0.837994 | 3.74E-57 | -1.69E-46 |
| MS.gene053971 | MS.gene96945 | 0.805999 | 1.02E-49 | -1.69E-46 |
| MS.gene054123 | MS.gene96945 | 0.847222 | 1.33E-59 | -1.69E-46 |
| MS.gene054183 | MS.gene96945 | 0.826288 | 2.95E-54 | -1.69E-46 |
| MS.gene054349 | MS.gene96945 | 0.806721 | 7.17E-50 | -1.69E-46 |
| MS.gene054556 | MS.gene96945 | 0.819609 | 1.06E-52 | -1.69E-46 |
| MS.gene05455 | MS.gene96945 | 0.862715 | 4.16E-64 | -1.69E-46 |
| MS.gene054719 | MS.gene96945 | 0.855724 | 5.21E-62 | -1.69E-46 |
| MS.gene054802 | MS.gene96945 | 0.800999 | 1.11E-48 | -1.69E-46 |
| MS.gene054917 | MS.gene96945 | 0.814506 | 1.49E-51 | -1.69E-46 |
| MS.gene054918 | MS.gene96945 | 0.801399 | 9.17E-49 | -1.69E-46 |
| MS.gene054955 | MS.gene96945 | 0.82699 | 2.00E-54 | -1.69E-46 |
| MS.gene054983 | MS.gene96945 | 0.805546 | 1.27E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene96945 | 0.86519 | 7.07E-65 | -1.69E-46 |
| MS.gene055277 | MS.gene96945 | 0.850091 | 2.12E-60 | -1.69E-46 |
| MS.gene055369 | MS.gene96945 | 0.808785 | 2.61E-50 | -1.69E-46 |
| MS.gene055390 | MS.gene96945 | 0.837442 | 5.18E-57 | -1.69E-46 |
| MS.gene055412 | MS.gene96945 | 0.823929 | 1.06E-53 | -1.69E-46 |
| MS.gene055422 | MS.gene96945 | 0.864668 | 1.03E-64 | -1.69E-46 |
| MS.gene055428 | MS.gene96945 | 0.864237 | 1.41E-64 | -1.69E-46 |
| MS.gene055539 | MS.gene96945 | 0.819104 | 1.38E-52 | -1.69E-46 |
| MS.gene05553 | MS.gene96945 | 0.881914 | 1.62E-70 | -1.69E-46 |
| MS.gene05556 | MS.gene96945 | 0.812236 | 4.69E-51 | -1.69E-46 |
| MS.gene055601 | MS.gene96945 | -0.809883 | 1.52E-50 | -1.69E-46 |
| MS.gene055605 | MS.gene96945 | 0.800434 | 1.44E-48 | -1.69E-46 |
| MS.gene05594 | MS.gene96945 | 0.800682 | 1.29E-48 | -1.69E-46 |
| MS.gene056191 | MS.gene96945 | 0.833369 | 5.55E-56 | -1.69E-46 |
| MS.gene056407 | MS.gene96945 | 0.893722 | 4.82E-75 | -1.69E-46 |
| MS.gene056410 | MS.gene96945 | 0.824298 | 8.71E-54 | -1.69E-46 |
| MS.gene056451 | MS.gene96945 | 0.815189 | 1.05E-51 | -1.69E-46 |
| MS.gene056511 | MS.gene96945 | 0.831785 | 1.37E-55 | -1.69E-46 |
| MS.gene056514 | MS.gene96945 | 0.804523 | 2.07E-49 | -1.69E-46 |
| MS.gene056612 | MS.gene96945 | 0.841485 | 4.62E-58 | -1.69E-46 |
| MS.gene056723 | MS.gene96945 | 0.822687 | 2.07E-53 | -1.69E-46 |
| MS.gene056796 | MS.gene96945 | 0.854056 | 1.59E-61 | -1.69E-46 |
| MS.gene056899 | MS.gene96945 | -0.858549 | 7.63E-63 | -1.69E-46 |
| MS.gene056979 | MS.gene96945 | 0.803467 | 3.44E-49 | -1.69E-46 |
| MS.gene057011 | MS.gene96945 | 0.857656 | 1.41E-62 | -1.69E-46 |
| MS.gene05702 | MS.gene96945 | 0.865643 | 5.09E-65 | -1.69E-46 |
| MS.gene057121 | MS.gene96945 | 0.846054 | 2.76E-59 | -1.69E-46 |
| MS.gene057123 | MS.gene96945 | 0.826882 | 2.13E-54 | -1.69E-46 |
| MS.gene057124 | MS.gene96945 | 0.81435 | 1.61E-51 | -1.69E-46 |
| MS.gene057146 | MS.gene96945 | 0.844754 | 6.22E-59 | -1.69E-46 |
| MS.gene057245 | MS.gene96945 | 0.803327 | 3.68E-49 | -1.69E-46 |
| MS.gene05733 | MS.gene96945 | 0.808896 | 2.47E-50 | -1.69E-46 |
| MS.gene057396 | MS.gene96945 | 0.83704 | 6.57E-57 | -1.69E-46 |
| MS.gene057416 | MS.gene96945 | 0.802475 | 5.51E-49 | -1.69E-46 |
| MS.gene057448 | MS.gene96945 | 0.83776 | 4.30E-57 | -1.69E-46 |
| MS.gene057449 | MS.gene96945 | 0.831524 | 1.59E-55 | -1.69E-46 |
| MS.gene057450 | MS.gene96945 | 0.836821 | 7.47E-57 | -1.69E-46 |
| MS.gene057476 | MS.gene96945 | 0.809849 | 1.54E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene96945 | 0.863073 | 3.23E-64 | -1.69E-46 |
| MS.gene057823 | MS.gene96945 | 0.865783 | 4.60E-65 | -1.69E-46 |
| MS.gene057825 | MS.gene96945 | 0.816891 | 4.38E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene96945 | 0.889032 | 3.48E-73 | -1.69E-46 |
| MS.gene058006 | MS.gene96945 | 0.807047 | 6.12E-50 | -1.69E-46 |
| MS.gene058007 | MS.gene96945 | 0.833122 | 6.39E-56 | -1.69E-46 |
| MS.gene058019 | MS.gene96945 | 0.833621 | 4.80E-56 | -1.69E-46 |
| MS.gene05811 | MS.gene96945 | 0.899146 | 2.64E-77 | -1.69E-46 |
| MS.gene058142 | MS.gene96945 | 0.843361 | 1.47E-58 | -1.69E-46 |
| MS.gene058233 | MS.gene96945 | 0.847108 | 1.42E-59 | -1.69E-46 |
| MS.gene058276 | MS.gene96945 | 0.855409 | 6.43E-62 | -1.69E-46 |
| MS.gene058293 | MS.gene96945 | 0.851948 | 6.36E-61 | -1.69E-46 |
| MS.gene058376 | MS.gene96945 | 0.827952 | 1.18E-54 | -1.69E-46 |
| MS.gene05842 | MS.gene96945 | 0.831752 | 1.40E-55 | -1.69E-46 |
| MS.gene058444 | MS.gene96945 | 0.839265 | 1.76E-57 | -1.69E-46 |
| MS.gene058660 | MS.gene96945 | 0.873237 | 1.72E-67 | -1.69E-46 |
| MS.gene058700 | MS.gene96945 | 0.865345 | 6.32E-65 | -1.69E-46 |
| MS.gene058845 | MS.gene96945 | 0.812255 | 4.65E-51 | -1.69E-46 |
| MS.gene05886 | MS.gene96945 | 0.836014 | 1.20E-56 | -1.69E-46 |
| MS.gene058928 | MS.gene96945 | 0.844654 | 6.61E-59 | -1.69E-46 |
| MS.gene058993 | MS.gene96945 | 0.805749 | 1.15E-49 | -1.69E-46 |
| MS.gene058995 | MS.gene96945 | 0.804145 | 2.49E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene96945 | 0.916374 | 1.92E-85 | -1.69E-46 |
| MS.gene059082 | MS.gene96945 | 0.803519 | 3.35E-49 | -1.69E-46 |
| MS.gene059141 | MS.gene96945 | 0.886935 | 2.22E-72 | -1.69E-46 |
| MS.gene059285 | MS.gene96945 | 0.809126 | 2.21E-50 | -1.69E-46 |
| MS.gene059294 | MS.gene96945 | 0.810679 | 1.02E-50 | -1.69E-46 |
| MS.gene059326 | MS.gene96945 | 0.812471 | 4.17E-51 | -1.69E-46 |
| MS.gene059366 | MS.gene96945 | 0.802704 | 4.94E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene96945 | 0.858978 | 5.68E-63 | -1.69E-46 |
| MS.gene059462 | MS.gene96945 | 0.811546 | 6.63E-51 | -1.69E-46 |
| MS.gene059518 | MS.gene96945 | 0.830657 | 2.60E-55 | -1.69E-46 |
| MS.gene059536 | MS.gene96945 | 0.837194 | 6.00E-57 | -1.69E-46 |
| MS.gene059597 | MS.gene96945 | 0.88403 | 2.71E-71 | -1.69E-46 |
| MS.gene05959 | MS.gene96945 | 0.833919 | 4.04E-56 | -1.69E-46 |
| MS.gene059676 | MS.gene96945 | 0.889082 | 3.33E-73 | -1.69E-46 |
| MS.gene059688 | MS.gene96945 | 0.868788 | 5.03E-66 | -1.69E-46 |
| MS.gene059692 | MS.gene96945 | 0.857498 | 1.57E-62 | -1.69E-46 |
| MS.gene059695 | MS.gene96945 | 0.861682 | 8.64E-64 | -1.69E-46 |
| MS.gene059807 | MS.gene96945 | 0.80602 | 1.01E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene96945 | 0.865392 | 6.11E-65 | -1.69E-46 |
| MS.gene059894 | MS.gene96945 | 0.853354 | 2.53E-61 | -1.69E-46 |
| MS.gene059933 | MS.gene96945 | 0.80336 | 3.62E-49 | -1.69E-46 |
| MS.gene059960 | MS.gene96945 | 0.835782 | 1.37E-56 | -1.69E-46 |
| MS.gene060403 | MS.gene96945 | 0.893331 | 6.95E-75 | -1.69E-46 |
| MS.gene060407 | MS.gene96945 | 0.853798 | 1.88E-61 | -1.69E-46 |
| MS.gene060804 | MS.gene96945 | 0.80772 | 4.40E-50 | -1.69E-46 |
| MS.gene060818 | MS.gene96945 | 0.815348 | 9.68E-52 | -1.69E-46 |
| MS.gene060837 | MS.gene96945 | 0.817731 | 2.83E-52 | -1.69E-46 |
| MS.gene06090 | MS.gene96945 | 0.829656 | 4.56E-55 | -1.69E-46 |
| MS.gene060986 | MS.gene96945 | 0.862343 | 5.42E-64 | -1.69E-46 |
| MS.gene061049 | MS.gene96945 | 0.864945 | 8.43E-65 | -1.69E-46 |
| MS.gene061051 | MS.gene96945 | -0.835633 | 1.50E-56 | -1.69E-46 |
| MS.gene061154 | MS.gene96945 | 0.852612 | 4.12E-61 | -1.69E-46 |
| MS.gene061159 | MS.gene96945 | 0.863149 | 3.06E-64 | -1.69E-46 |
| MS.gene061200 | MS.gene96945 | 0.804454 | 2.14E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96945.t1 | MTR_1g046730 | 85.479 | 365 | 35 | 2 | 1 | 347 | 1 | 365 | 0.0 | 580 |
| MS.gene96945.t1 | MTR_5g009810 | 45.740 | 223 | 105 | 4 | 131 | 346 | 136 | 349 | 1.21e-47 | 164 |
| MS.gene96945.t1 | MTR_7g079850 | 40.758 | 211 | 118 | 2 | 134 | 344 | 76 | 279 | 1.25e-40 | 144 |
| MS.gene96945.t1 | MTR_1g111390 | 39.556 | 225 | 114 | 5 | 133 | 343 | 7 | 223 | 4.24e-38 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96945.t1 | AT4G13590 | 68.657 | 335 | 100 | 3 | 18 | 347 | 25 | 359 | 6.00e-151 | 429 |
| MS.gene96945.t1 | AT4G13590 | 68.657 | 335 | 100 | 3 | 18 | 347 | 25 | 359 | 1.42e-150 | 428 |
| MS.gene96945.t1 | AT1G64150 | 48.402 | 219 | 96 | 5 | 131 | 342 | 156 | 364 | 4.61e-46 | 161 |
| MS.gene96945.t1 | AT5G36290 | 42.222 | 225 | 115 | 5 | 126 | 344 | 74 | 289 | 8.71e-39 | 140 |
| MS.gene96945.t1 | AT5G36290 | 42.222 | 225 | 115 | 5 | 126 | 344 | 74 | 289 | 8.71e-39 | 140 |
| MS.gene96945.t1 | AT1G25520 | 39.474 | 228 | 111 | 6 | 133 | 343 | 7 | 224 | 4.36e-36 | 130 |
| MS.gene96945.t1 | AT1G68650 | 39.035 | 228 | 108 | 5 | 133 | 342 | 7 | 221 | 5.16e-34 | 125 |
Find 74 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCATCAGGTTGGTTATT+TGG | 0.099863 | 1.4:+31355552 | MS.gene96945:intron |
| CAAATCCTCTTGAGATTCTT+TGG | 0.174329 | 1.4:+31354634 | MS.gene96945:CDS |
| TTTCATCAGGTTGGTTATTT+GGG | 0.251861 | 1.4:+31355553 | MS.gene96945:intron |
| AATTTCTTTCAGAGACATTC+TGG | 0.273491 | 1.4:-31347295 | None:intergenic |
| TCAATCCTATCTGTTGTAAT+TGG | 0.287895 | 1.4:+31352947 | MS.gene96945:CDS |
| TTATTCTTTACAGTCTCCTT+GGG | 0.295993 | 1.4:+31355368 | MS.gene96945:intron |
| CCTATTCGAACTTACTTGTT+TGG | 0.322104 | 1.4:-31353000 | None:intergenic |
| CCATCTTGTACTTATTTCTC+TGG | 0.326005 | 1.4:+31346674 | MS.gene96945:CDS |
| TTAATATTTGTTTCTGAAAT+CGG | 0.332716 | 1.4:+31348644 | MS.gene96945:CDS |
| CTTGCAGCAATTGCAAAATC+AGG | 0.333816 | 1.4:+31348602 | MS.gene96945:CDS |
| CTTATTCTTTACAGTCTCCT+TGG | 0.338454 | 1.4:+31355367 | MS.gene96945:intron |
| AGTAAGATGCAGACAGAAAT+CGG | 0.356146 | 1.4:+31347181 | MS.gene96945:intron |
| AATCGCGCTCGCAGCTGCTC+AGG | 0.359687 | 1.4:+31355020 | MS.gene96945:CDS |
| TCAGCTAGTTCATCAAGTTC+AGG | 0.393960 | 1.4:-31354248 | None:intergenic |
| CTGCATATTCTCCGATTGGC+AGG | 0.397092 | 1.4:-31354133 | None:intergenic |
| ATTCTTTATTGCTGCACTCT+TGG | 0.409806 | 1.4:+31351825 | MS.gene96945:CDS |
| GCAACATGCATTGCTATTGT+TGG | 0.419667 | 1.4:+31355426 | MS.gene96945:CDS |
| CAGGTTGGTTATTTGGGTGG+AGG | 0.435131 | 1.4:+31355559 | MS.gene96945:intron |
| GTTAGGATCAATGGGTGCTC+TGG | 0.445738 | 1.4:+31352916 | MS.gene96945:CDS |
| ATCAAATGTTAGCGTTGGAC+CGG | 0.451541 | 1.4:+31347240 | MS.gene96945:CDS |
| TTTACAGTCTCCTTGGGGTG+TGG | 0.461676 | 1.4:+31355374 | MS.gene96945:intron |
| GTGGCAAGTGGAGCTATTGC+TGG | 0.467080 | 1.4:+31355393 | MS.gene96945:CDS |
| AAATCGGGGTTGAGCTTGGC+CGG | 0.468936 | 1.4:+31347197 | MS.gene96945:CDS |
| GTAAGATGCAGACAGAAATC+GGG | 0.474277 | 1.4:+31347182 | MS.gene96945:intron |
| AGAGGAGCTTGTGAAAGAAA+AGG | 0.481283 | 1.4:+31354274 | MS.gene96945:CDS |
| AGGTTGGTTATTTGGGTGGA+GGG | 0.484602 | 1.4:+31355560 | MS.gene96945:intron |
| TTCAATATTGCAAATGAAAG+AGG | 0.489232 | 1.4:-31346644 | None:intergenic |
| CATCAGGTTGGTTATTTGGG+TGG | 0.492256 | 1.4:+31355556 | MS.gene96945:intron |
| TTACTTGTTTGGAACTGAGC+AGG | 0.496197 | 1.4:-31352989 | None:intergenic |
| TCTCCTTGGGGTGTGGCAAG+TGG | 0.497420 | 1.4:+31355381 | MS.gene96945:CDS |
| ACAGAAATCGGGGTTGAGCT+TGG | 0.500440 | 1.4:+31347193 | MS.gene96945:CDS |
| CATCTTGTACTTATTTCTCT+GGG | 0.505932 | 1.4:+31346675 | MS.gene96945:CDS |
| AAAGCTATAGAGACGGGATA+AGG | 0.505986 | 1.4:-31348512 | None:intergenic |
| CATACACCCTTGATTCCAAA+GGG | 0.511728 | 1.4:+31346614 | MS.gene96945:CDS |
| CTACCTACAGCCCTGCCAAT+CGG | 0.512958 | 1.4:+31354122 | MS.gene96945:intron |
| TTCTTGCTTCCATAATCCCC+CGG | 0.520778 | 1.4:-31347259 | None:intergenic |
| TATGGAAGCAAGAATGAGAA+AGG | 0.525831 | 1.4:+31347268 | MS.gene96945:CDS |
| AAACTTACATGGAGATAAAG+TGG | 0.528431 | 1.4:-31346703 | None:intergenic |
| TCAAATGTTAGCGTTGGACC+GGG | 0.528619 | 1.4:+31347241 | MS.gene96945:CDS |
| TAAAATCAATAAAAGACGCA+TGG | 0.530108 | 1.4:+31354183 | MS.gene96945:CDS |
| ACATGCATTGCTATTGTTGG+AGG | 0.530842 | 1.4:+31355429 | MS.gene96945:CDS |
| TTTCTGAAATGTAGTTAGCA+AGG | 0.537790 | 1.4:-31355458 | None:intergenic |
| CGCATGGGATCTTCCTTCAA+AGG | 0.539180 | 1.4:+31354199 | MS.gene96945:CDS |
| TCACTAATAGCATTTGTGAA+AGG | 0.545498 | 1.4:+31348563 | MS.gene96945:CDS |
| CAAGCATCAAATGTTAGCGT+TGG | 0.550774 | 1.4:+31347235 | MS.gene96945:CDS |
| CTTGGCAATGCAATATGAGA+AGG | 0.551638 | 1.4:+31351843 | MS.gene96945:CDS |
| AGCACAAAAGCTATAGAGAC+GGG | 0.560001 | 1.4:-31348518 | None:intergenic |
| ACTGCTGCATATTCTCCGAT+TGG | 0.561503 | 1.4:-31354137 | None:intergenic |
| TGCATATTCTCCGATTGGCA+GGG | 0.562749 | 1.4:-31354132 | None:intergenic |
| CCAGAGAAATAAGTACAAGA+TGG | 0.563642 | 1.4:-31346674 | None:intergenic |
| AAAATCAATAAAAGACGCAT+GGG | 0.563865 | 1.4:+31354184 | MS.gene96945:CDS |
| AATATTGCAAATGAAAGAGG+AGG | 0.573313 | 1.4:-31346641 | None:intergenic |
| AAATGTTAGCGTTGGACCGG+GGG | 0.578907 | 1.4:+31347243 | MS.gene96945:CDS |
| TGTTTCTGAAATCGGTGACA+AGG | 0.580810 | 1.4:+31348652 | MS.gene96945:CDS |
| CTAATAGCATTTGTGAAAGG+AGG | 0.584986 | 1.4:+31348566 | MS.gene96945:CDS |
| CAGGCACTGATTGAAAGATA+CGG | 0.586259 | 1.4:-31352970 | None:intergenic |
| GCTCCACTTGCCACACCCCA+AGG | 0.586539 | 1.4:-31355384 | None:intergenic |
| TCATACACCCTTGATTCCAA+AGG | 0.588292 | 1.4:+31346613 | MS.gene96945:CDS |
| CGATTGTTGCAAGCATTGAA+CGG | 0.592003 | 1.4:-31355002 | None:intergenic |
| AATGCAATATGAGAAGGGAT+TGG | 0.594404 | 1.4:+31351849 | MS.gene96945:CDS |
| CTTGAGCTCGAATGTTCCAC+CGG | 0.596223 | 1.4:-31347216 | None:intergenic |
| TATTCTTTACAGTCTCCTTG+GGG | 0.604508 | 1.4:+31355369 | MS.gene96945:intron |
| ACGGGATAAGGAATCTGAGT+AGG | 0.607992 | 1.4:-31348500 | None:intergenic |
| TACGGCCAATTACAACAGAT+AGG | 0.609783 | 1.4:-31352952 | None:intergenic |
| CAGCACAAAAGCTATAGAGA+CGG | 0.611599 | 1.4:-31348519 | None:intergenic |
| CAAATGTTAGCGTTGGACCG+GGG | 0.618540 | 1.4:+31347242 | MS.gene96945:CDS |
| TCGGGGTTGAGCTTGGCCGG+TGG | 0.622861 | 1.4:+31347200 | MS.gene96945:CDS |
| GATTTCCAAAGAATCTCAAG+AGG | 0.623224 | 1.4:-31354639 | None:intergenic |
| TTGGCAATGCAATATGAGAA+GGG | 0.625006 | 1.4:+31351844 | MS.gene96945:CDS |
| GACTGATTTGCCTAGGAATG+GGG | 0.632644 | 1.4:+31354976 | MS.gene96945:intron |
| ATTGCTGCAAGAACTGATGA+AGG | 0.633169 | 1.4:-31348590 | None:intergenic |
| TGATGAACTAGCTGAAGCAG+AGG | 0.638039 | 1.4:+31354256 | MS.gene96945:CDS |
| AATATCTTCAGGCATCGCAA+CGG | 0.661954 | 1.4:+31354607 | MS.gene96945:intron |
| TAAGATGCAGACAGAAATCG+GGG | 0.689757 | 1.4:+31347183 | MS.gene96945:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 31346596 | 31355627 | 31346596 | ID=MS.gene96945 |
| chr1.4 | mRNA | 31346596 | 31355627 | 31346596 | ID=MS.gene96945.t1;Parent=MS.gene96945 |
| chr1.4 | exon | 31346596 | 31346717 | 31346596 | ID=MS.gene96945.t1.exon1;Parent=MS.gene96945.t1 |
| chr1.4 | CDS | 31346596 | 31346717 | 31346596 | ID=cds.MS.gene96945.t1;Parent=MS.gene96945.t1 |
| chr1.4 | exon | 31347187 | 31347330 | 31347187 | ID=MS.gene96945.t1.exon2;Parent=MS.gene96945.t1 |
| chr1.4 | CDS | 31347187 | 31347330 | 31347187 | ID=cds.MS.gene96945.t1;Parent=MS.gene96945.t1 |
| chr1.4 | exon | 31348493 | 31348673 | 31348493 | ID=MS.gene96945.t1.exon3;Parent=MS.gene96945.t1 |
| chr1.4 | CDS | 31348493 | 31348673 | 31348493 | ID=cds.MS.gene96945.t1;Parent=MS.gene96945.t1 |
| chr1.4 | exon | 31351823 | 31351870 | 31351823 | ID=MS.gene96945.t1.exon4;Parent=MS.gene96945.t1 |
| chr1.4 | CDS | 31351823 | 31351870 | 31351823 | ID=cds.MS.gene96945.t1;Parent=MS.gene96945.t1 |
| chr1.4 | exon | 31352911 | 31353007 | 31352911 | ID=MS.gene96945.t1.exon5;Parent=MS.gene96945.t1 |
| chr1.4 | CDS | 31352911 | 31353007 | 31352911 | ID=cds.MS.gene96945.t1;Parent=MS.gene96945.t1 |
| chr1.4 | exon | 31354132 | 31354295 | 31354132 | ID=MS.gene96945.t1.exon6;Parent=MS.gene96945.t1 |
| chr1.4 | CDS | 31354132 | 31354295 | 31354132 | ID=cds.MS.gene96945.t1;Parent=MS.gene96945.t1 |
| chr1.4 | exon | 31354618 | 31354683 | 31354618 | ID=MS.gene96945.t1.exon7;Parent=MS.gene96945.t1 |
| chr1.4 | CDS | 31354618 | 31354683 | 31354618 | ID=cds.MS.gene96945.t1;Parent=MS.gene96945.t1 |
| chr1.4 | exon | 31354991 | 31355041 | 31354991 | ID=MS.gene96945.t1.exon8;Parent=MS.gene96945.t1 |
| chr1.4 | CDS | 31354991 | 31355041 | 31354991 | ID=cds.MS.gene96945.t1;Parent=MS.gene96945.t1 |
| chr1.4 | exon | 31355381 | 31355485 | 31355381 | ID=MS.gene96945.t1.exon9;Parent=MS.gene96945.t1 |
| chr1.4 | CDS | 31355381 | 31355485 | 31355381 | ID=cds.MS.gene96945.t1;Parent=MS.gene96945.t1 |
| chr1.4 | exon | 31355562 | 31355627 | 31355562 | ID=MS.gene96945.t1.exon10;Parent=MS.gene96945.t1 |
| chr1.4 | CDS | 31355562 | 31355627 | 31355562 | ID=cds.MS.gene96945.t1;Parent=MS.gene96945.t1 |
| Gene Sequence |
| Protein sequence |
