Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28314.t1 | XP_003606831.1 | 98.4 | 319 | 4 | 1 | 1 | 318 | 1 | 319 | 2.70E-157 | 564.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28314.t1 | Q03943 | 86.7 | 323 | 36 | 2 | 1 | 317 | 1 | 322 | 6.8e-141 | 501.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28314.t1 | G7JEX0 | 98.4 | 319 | 4 | 1 | 1 | 318 | 1 | 319 | 2.0e-157 | 564.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene28314 | 0.838169 | 3.37E-57 | -1.69E-46 |
| MS.gene049150 | MS.gene28314 | 0.809829 | 1.56E-50 | -1.69E-46 |
| MS.gene049153 | MS.gene28314 | 0.817019 | 4.10E-52 | -1.69E-46 |
| MS.gene049284 | MS.gene28314 | 0.802295 | 6.00E-49 | -1.69E-46 |
| MS.gene049346 | MS.gene28314 | 0.802866 | 4.58E-49 | -1.69E-46 |
| MS.gene049351 | MS.gene28314 | 0.84145 | 4.72E-58 | -1.69E-46 |
| MS.gene049356 | MS.gene28314 | 0.859082 | 5.29E-63 | -1.69E-46 |
| MS.gene049369 | MS.gene28314 | 0.812537 | 4.03E-51 | -1.69E-46 |
| MS.gene049427 | MS.gene28314 | 0.862615 | 4.47E-64 | -1.69E-46 |
| MS.gene049488 | MS.gene28314 | 0.852416 | 4.68E-61 | -1.69E-46 |
| MS.gene049491 | MS.gene28314 | 0.824871 | 6.38E-54 | -1.69E-46 |
| MS.gene049609 | MS.gene28314 | 0.805867 | 1.08E-49 | -1.69E-46 |
| MS.gene049661 | MS.gene28314 | 0.862913 | 3.62E-64 | -1.69E-46 |
| MS.gene049662 | MS.gene28314 | 0.855214 | 7.33E-62 | -1.69E-46 |
| MS.gene049758 | MS.gene28314 | 0.824271 | 8.84E-54 | -1.69E-46 |
| MS.gene049805 | MS.gene28314 | 0.833245 | 5.96E-56 | -1.69E-46 |
| MS.gene049910 | MS.gene28314 | 0.816828 | 4.52E-52 | -1.69E-46 |
| MS.gene050076 | MS.gene28314 | 0.81354 | 2.43E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene28314 | 0.87262 | 2.77E-67 | -1.69E-46 |
| MS.gene050397 | MS.gene28314 | 0.846143 | 2.61E-59 | -1.69E-46 |
| MS.gene050404 | MS.gene28314 | 0.81366 | 2.29E-51 | -1.69E-46 |
| MS.gene050406 | MS.gene28314 | 0.837326 | 5.55E-57 | -1.69E-46 |
| MS.gene050426 | MS.gene28314 | -0.826505 | 2.62E-54 | -1.69E-46 |
| MS.gene050432 | MS.gene28314 | 0.832366 | 9.85E-56 | -1.69E-46 |
| MS.gene050464 | MS.gene28314 | 0.859488 | 4.00E-63 | -1.69E-46 |
| MS.gene050529 | MS.gene28314 | 0.877632 | 5.38E-69 | -1.69E-46 |
| MS.gene050593 | MS.gene28314 | 0.822073 | 2.88E-53 | -1.69E-46 |
| MS.gene050670 | MS.gene28314 | 0.901735 | 1.98E-78 | -1.69E-46 |
| MS.gene050812 | MS.gene28314 | 0.843322 | 1.50E-58 | -1.69E-46 |
| MS.gene050971 | MS.gene28314 | 0.820164 | 7.93E-53 | -1.69E-46 |
| MS.gene05101 | MS.gene28314 | 0.855518 | 5.98E-62 | -1.69E-46 |
| MS.gene05105 | MS.gene28314 | 0.886473 | 3.32E-72 | -1.69E-46 |
| MS.gene051387 | MS.gene28314 | 0.832149 | 1.11E-55 | -1.69E-46 |
| MS.gene051471 | MS.gene28314 | 0.846416 | 2.20E-59 | -1.69E-46 |
| MS.gene051525 | MS.gene28314 | 0.842029 | 3.32E-58 | -1.69E-46 |
| MS.gene051582 | MS.gene28314 | 0.846199 | 2.52E-59 | -1.69E-46 |
| MS.gene051605 | MS.gene28314 | 0.830669 | 2.58E-55 | -1.69E-46 |
| MS.gene051666 | MS.gene28314 | 0.834949 | 2.23E-56 | -1.69E-46 |
| MS.gene051860 | MS.gene28314 | 0.816162 | 6.38E-52 | -1.69E-46 |
| MS.gene052011 | MS.gene28314 | -0.83425 | 3.34E-56 | -1.69E-46 |
| MS.gene052077 | MS.gene28314 | 0.826972 | 2.02E-54 | -1.69E-46 |
| MS.gene052078 | MS.gene28314 | 0.867481 | 1.33E-65 | -1.69E-46 |
| MS.gene052134 | MS.gene28314 | 0.810461 | 1.14E-50 | -1.69E-46 |
| MS.gene052135 | MS.gene28314 | 0.825586 | 4.32E-54 | -1.69E-46 |
| MS.gene052136 | MS.gene28314 | 0.809448 | 1.88E-50 | -1.69E-46 |
| MS.gene052178 | MS.gene28314 | 0.800691 | 1.28E-48 | -1.69E-46 |
| MS.gene052188 | MS.gene28314 | 0.925195 | 2.55E-90 | -1.69E-46 |
| MS.gene052253 | MS.gene28314 | 0.909453 | 5.60E-82 | -1.69E-46 |
| MS.gene052310 | MS.gene28314 | 0.900378 | 7.78E-78 | -1.69E-46 |
| MS.gene052322 | MS.gene28314 | 0.837846 | 4.09E-57 | -1.69E-46 |
| MS.gene052326 | MS.gene28314 | 0.800301 | 1.54E-48 | -1.69E-46 |
| MS.gene052340 | MS.gene28314 | 0.896071 | 5.24E-76 | -1.69E-46 |
| MS.gene052414 | MS.gene28314 | 0.835211 | 1.91E-56 | -1.69E-46 |
| MS.gene052421 | MS.gene28314 | 0.854069 | 1.57E-61 | -1.69E-46 |
| MS.gene052481 | MS.gene28314 | 0.847816 | 9.10E-60 | -1.69E-46 |
| MS.gene052484 | MS.gene28314 | 0.817964 | 2.51E-52 | -1.69E-46 |
| MS.gene052485 | MS.gene28314 | 0.874681 | 5.58E-68 | -1.69E-46 |
| MS.gene052505 | MS.gene28314 | 0.808645 | 2.80E-50 | -1.69E-46 |
| MS.gene052615 | MS.gene28314 | 0.819635 | 1.05E-52 | -1.69E-46 |
| MS.gene052982 | MS.gene28314 | 0.825108 | 5.61E-54 | -1.69E-46 |
| MS.gene053009 | MS.gene28314 | 0.804953 | 1.69E-49 | -1.69E-46 |
| MS.gene053103 | MS.gene28314 | 0.81709 | 3.95E-52 | -1.69E-46 |
| MS.gene053209 | MS.gene28314 | 0.847072 | 1.46E-59 | -1.69E-46 |
| MS.gene053322 | MS.gene28314 | 0.809542 | 1.80E-50 | -1.69E-46 |
| MS.gene053557 | MS.gene28314 | 0.839033 | 2.02E-57 | -1.69E-46 |
| MS.gene053758 | MS.gene28314 | 0.870191 | 1.76E-66 | -1.69E-46 |
| MS.gene053813 | MS.gene28314 | 0.810867 | 9.31E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene28314 | 0.860707 | 1.71E-63 | -1.69E-46 |
| MS.gene053912 | MS.gene28314 | 0.862109 | 6.39E-64 | -1.69E-46 |
| MS.gene053928 | MS.gene28314 | 0.806919 | 6.51E-50 | -1.69E-46 |
| MS.gene054123 | MS.gene28314 | 0.861291 | 1.14E-63 | -1.69E-46 |
| MS.gene054183 | MS.gene28314 | 0.841174 | 5.58E-58 | -1.69E-46 |
| MS.gene054349 | MS.gene28314 | 0.851778 | 7.11E-61 | -1.69E-46 |
| MS.gene054556 | MS.gene28314 | 0.812598 | 3.91E-51 | -1.69E-46 |
| MS.gene054719 | MS.gene28314 | 0.812194 | 4.79E-51 | -1.69E-46 |
| MS.gene054917 | MS.gene28314 | 0.819874 | 9.24E-53 | -1.69E-46 |
| MS.gene054918 | MS.gene28314 | 0.811344 | 7.34E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene28314 | 0.801845 | 7.43E-49 | -1.69E-46 |
| MS.gene054955 | MS.gene28314 | 0.826118 | 3.23E-54 | -1.69E-46 |
| MS.gene05505 | MS.gene28314 | 0.826488 | 2.64E-54 | -1.69E-46 |
| MS.gene055116 | MS.gene28314 | 0.903461 | 3.39E-79 | -1.69E-46 |
| MS.gene055277 | MS.gene28314 | 0.848624 | 5.45E-60 | -1.69E-46 |
| MS.gene055369 | MS.gene28314 | 0.823539 | 1.31E-53 | -1.69E-46 |
| MS.gene055370 | MS.gene28314 | 0.812819 | 3.50E-51 | -1.69E-46 |
| MS.gene055390 | MS.gene28314 | 0.816758 | 4.69E-52 | -1.69E-46 |
| MS.gene055397 | MS.gene28314 | 0.8055 | 1.30E-49 | -1.69E-46 |
| MS.gene055412 | MS.gene28314 | 0.841753 | 3.92E-58 | -1.69E-46 |
| MS.gene055422 | MS.gene28314 | 0.860767 | 1.64E-63 | -1.69E-46 |
| MS.gene055428 | MS.gene28314 | 0.841853 | 3.69E-58 | -1.69E-46 |
| MS.gene055539 | MS.gene28314 | 0.831151 | 1.96E-55 | -1.69E-46 |
| MS.gene05553 | MS.gene28314 | 0.859325 | 4.47E-63 | -1.69E-46 |
| MS.gene055601 | MS.gene28314 | -0.801182 | 1.02E-48 | -1.69E-46 |
| MS.gene055604 | MS.gene28314 | 0.810886 | 9.22E-51 | -1.69E-46 |
| MS.gene055744 | MS.gene28314 | 0.804336 | 2.27E-49 | -1.69E-46 |
| MS.gene05594 | MS.gene28314 | 0.810848 | 9.40E-51 | -1.69E-46 |
| MS.gene056191 | MS.gene28314 | 0.847308 | 1.26E-59 | -1.69E-46 |
| MS.gene056233 | MS.gene28314 | 0.826923 | 2.08E-54 | -1.69E-46 |
| MS.gene056337 | MS.gene28314 | 0.822837 | 1.91E-53 | -1.69E-46 |
| MS.gene056407 | MS.gene28314 | 0.857875 | 1.21E-62 | -1.69E-46 |
| MS.gene056497 | MS.gene28314 | 0.800592 | 1.34E-48 | -1.69E-46 |
| MS.gene056511 | MS.gene28314 | 0.868592 | 5.82E-66 | -1.69E-46 |
| MS.gene056514 | MS.gene28314 | 0.80131 | 9.56E-49 | -1.69E-46 |
| MS.gene056609 | MS.gene28314 | 0.880801 | 4.07E-70 | -1.69E-46 |
| MS.gene056612 | MS.gene28314 | 0.846152 | 2.60E-59 | -1.69E-46 |
| MS.gene056659 | MS.gene28314 | 0.88524 | 9.65E-72 | -1.69E-46 |
| MS.gene056719 | MS.gene28314 | 0.801498 | 8.75E-49 | -1.69E-46 |
| MS.gene056723 | MS.gene28314 | 0.826546 | 2.56E-54 | -1.69E-46 |
| MS.gene056796 | MS.gene28314 | 0.811266 | 7.63E-51 | -1.69E-46 |
| MS.gene056899 | MS.gene28314 | -0.840185 | 1.01E-57 | -1.69E-46 |
| MS.gene057011 | MS.gene28314 | 0.819707 | 1.01E-52 | -1.69E-46 |
| MS.gene05702 | MS.gene28314 | 0.867708 | 1.12E-65 | -1.69E-46 |
| MS.gene057076 | MS.gene28314 | 0.804149 | 2.48E-49 | -1.69E-46 |
| MS.gene057121 | MS.gene28314 | 0.829226 | 5.79E-55 | -1.69E-46 |
| MS.gene057123 | MS.gene28314 | 0.812944 | 3.29E-51 | -1.69E-46 |
| MS.gene057124 | MS.gene28314 | 0.881488 | 2.30E-70 | -1.69E-46 |
| MS.gene057129 | MS.gene28314 | 0.803582 | 3.25E-49 | -1.69E-46 |
| MS.gene057146 | MS.gene28314 | 0.856194 | 3.79E-62 | -1.69E-46 |
| MS.gene057207 | MS.gene28314 | 0.830851 | 2.33E-55 | -1.69E-46 |
| MS.gene057245 | MS.gene28314 | 0.801817 | 7.53E-49 | -1.69E-46 |
| MS.gene05733 | MS.gene28314 | 0.805578 | 1.25E-49 | -1.69E-46 |
| MS.gene05735 | MS.gene28314 | 0.80341 | 3.53E-49 | -1.69E-46 |
| MS.gene057396 | MS.gene28314 | 0.837116 | 6.29E-57 | -1.69E-46 |
| MS.gene057416 | MS.gene28314 | 0.800229 | 1.59E-48 | -1.69E-46 |
| MS.gene057448 | MS.gene28314 | 0.839023 | 2.03E-57 | -1.69E-46 |
| MS.gene057449 | MS.gene28314 | 0.837303 | 5.63E-57 | -1.69E-46 |
| MS.gene057450 | MS.gene28314 | 0.835442 | 1.67E-56 | -1.69E-46 |
| MS.gene057476 | MS.gene28314 | 0.806247 | 9.03E-50 | -1.69E-46 |
| MS.gene057734 | MS.gene28314 | 0.802445 | 5.59E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene28314 | 0.889414 | 2.48E-73 | -1.69E-46 |
| MS.gene057823 | MS.gene28314 | 0.884347 | 2.07E-71 | -1.69E-46 |
| MS.gene057825 | MS.gene28314 | 0.856529 | 3.03E-62 | -1.69E-46 |
| MS.gene058002 | MS.gene28314 | 0.881724 | 1.89E-70 | -1.69E-46 |
| MS.gene058007 | MS.gene28314 | 0.851956 | 6.33E-61 | -1.69E-46 |
| MS.gene058019 | MS.gene28314 | 0.812117 | 4.98E-51 | -1.69E-46 |
| MS.gene058082 | MS.gene28314 | 0.821874 | 3.20E-53 | -1.69E-46 |
| MS.gene05811 | MS.gene28314 | 0.846082 | 2.72E-59 | -1.69E-46 |
| MS.gene058130 | MS.gene28314 | 0.803791 | 2.95E-49 | -1.69E-46 |
| MS.gene058142 | MS.gene28314 | 0.864043 | 1.61E-64 | -1.69E-46 |
| MS.gene058218 | MS.gene28314 | -0.804613 | 1.99E-49 | -1.69E-46 |
| MS.gene058233 | MS.gene28314 | 0.84321 | 1.61E-58 | -1.69E-46 |
| MS.gene058276 | MS.gene28314 | 0.838028 | 3.67E-57 | -1.69E-46 |
| MS.gene058293 | MS.gene28314 | 0.832143 | 1.12E-55 | -1.69E-46 |
| MS.gene058365 | MS.gene28314 | 0.844492 | 7.31E-59 | -1.69E-46 |
| MS.gene058376 | MS.gene28314 | 0.812401 | 4.32E-51 | -1.69E-46 |
| MS.gene058444 | MS.gene28314 | 0.824759 | 6.78E-54 | -1.69E-46 |
| MS.gene058660 | MS.gene28314 | 0.898202 | 6.68E-77 | -1.69E-46 |
| MS.gene058700 | MS.gene28314 | 0.833772 | 4.40E-56 | -1.69E-46 |
| MS.gene058710 | MS.gene28314 | 0.843891 | 1.06E-58 | -1.69E-46 |
| MS.gene058787 | MS.gene28314 | 0.806326 | 8.68E-50 | -1.69E-46 |
| MS.gene05883 | MS.gene28314 | 0.807778 | 4.28E-50 | -1.69E-46 |
| MS.gene05886 | MS.gene28314 | 0.902285 | 1.13E-78 | -1.69E-46 |
| MS.gene058928 | MS.gene28314 | 0.907416 | 5.19E-81 | -1.69E-46 |
| MS.gene058948 | MS.gene28314 | 0.822672 | 2.09E-53 | -1.69E-46 |
| MS.gene058949 | MS.gene28314 | 0.826469 | 2.67E-54 | -1.69E-46 |
| MS.gene058993 | MS.gene28314 | 0.81871 | 1.70E-52 | -1.69E-46 |
| MS.gene059011 | MS.gene28314 | 0.813125 | 3.00E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene28314 | 0.869616 | 2.71E-66 | -1.69E-46 |
| MS.gene059082 | MS.gene28314 | 0.80317 | 3.96E-49 | -1.69E-46 |
| MS.gene059141 | MS.gene28314 | 0.873033 | 2.01E-67 | -1.69E-46 |
| MS.gene059285 | MS.gene28314 | 0.864738 | 9.80E-65 | -1.69E-46 |
| MS.gene059294 | MS.gene28314 | 0.815164 | 1.06E-51 | -1.69E-46 |
| MS.gene059366 | MS.gene28314 | 0.8366 | 8.51E-57 | -1.69E-46 |
| MS.gene059420 | MS.gene28314 | 0.875653 | 2.60E-68 | -1.69E-46 |
| MS.gene059455 | MS.gene28314 | 0.805118 | 1.56E-49 | -1.69E-46 |
| MS.gene059462 | MS.gene28314 | 0.808852 | 2.53E-50 | -1.69E-46 |
| MS.gene059518 | MS.gene28314 | 0.813526 | 2.45E-51 | -1.69E-46 |
| MS.gene059536 | MS.gene28314 | 0.840019 | 1.12E-57 | -1.69E-46 |
| MS.gene059597 | MS.gene28314 | 0.881542 | 2.20E-70 | -1.69E-46 |
| MS.gene05959 | MS.gene28314 | 0.835342 | 1.77E-56 | -1.69E-46 |
| MS.gene059676 | MS.gene28314 | 0.861668 | 8.73E-64 | -1.69E-46 |
| MS.gene059688 | MS.gene28314 | 0.906581 | 1.27E-80 | -1.69E-46 |
| MS.gene059692 | MS.gene28314 | 0.894055 | 3.53E-75 | -1.69E-46 |
| MS.gene059695 | MS.gene28314 | 0.895279 | 1.11E-75 | -1.69E-46 |
| MS.gene059708 | MS.gene28314 | 0.803059 | 4.18E-49 | -1.69E-46 |
| MS.gene059711 | MS.gene28314 | 0.812719 | 3.68E-51 | -1.69E-46 |
| MS.gene059807 | MS.gene28314 | 0.821423 | 4.07E-53 | -1.69E-46 |
| MS.gene05984 | MS.gene28314 | 0.864662 | 1.03E-64 | -1.69E-46 |
| MS.gene059894 | MS.gene28314 | 0.853876 | 1.79E-61 | -1.69E-46 |
| MS.gene059960 | MS.gene28314 | 0.826695 | 2.36E-54 | -1.69E-46 |
| MS.gene060247 | MS.gene28314 | 0.83409 | 3.66E-56 | -1.69E-46 |
| MS.gene06037 | MS.gene28314 | 0.81737 | 3.42E-52 | -1.69E-46 |
| MS.gene060403 | MS.gene28314 | 0.862573 | 4.61E-64 | -1.69E-46 |
| MS.gene060407 | MS.gene28314 | 0.862073 | 6.56E-64 | -1.69E-46 |
| MS.gene060804 | MS.gene28314 | 0.838005 | 3.72E-57 | -1.69E-46 |
| MS.gene060818 | MS.gene28314 | 0.828942 | 6.79E-55 | -1.69E-46 |
| MS.gene060835 | MS.gene28314 | 0.801921 | 7.17E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene28314 | 0.826014 | 3.42E-54 | -1.69E-46 |
| MS.gene060986 | MS.gene28314 | 0.805764 | 1.14E-49 | -1.69E-46 |
| MS.gene061041 | MS.gene28314 | 0.823827 | 1.12E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene28314 | 0.88736 | 1.53E-72 | -1.69E-46 |
| MS.gene061051 | MS.gene28314 | -0.8585 | 7.89E-63 | -1.69E-46 |
| MS.gene061154 | MS.gene28314 | 0.836605 | 8.48E-57 | -1.69E-46 |
| MS.gene061159 | MS.gene28314 | 0.849325 | 3.48E-60 | -1.69E-46 |
| MS.gene061200 | MS.gene28314 | 0.808438 | 3.10E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28314.t1 | MTR_4g068210 | 98.433 | 319 | 4 | 1 | 1 | 318 | 1 | 319 | 0.0 | 627 |
| MS.gene28314.t1 | MTR_4g068210 | 97.976 | 247 | 5 | 0 | 72 | 318 | 1 | 247 | 8.09e-174 | 481 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28314.t1 | AT1G65260 | 71.622 | 296 | 78 | 4 | 27 | 318 | 37 | 330 | 1.71e-148 | 421 |
| MS.gene28314.t1 | AT1G65260 | 77.220 | 259 | 57 | 1 | 62 | 318 | 1 | 259 | 2.50e-145 | 410 |
Find 62 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGGATCCCGAGAAAATTT+TGG | 0.219648 | 4.4:-39003958 | MS.gene28314:CDS |
| GTCCTAGTGCTACTTCTTCC+AGG | 0.336680 | 4.4:+38996404 | None:intergenic |
| AGGAAGTGGCGAGAGGCTTT+CGG | 0.379155 | 4.4:+39004310 | None:intergenic |
| CTTCATTCCTCTGAATTTCA+CGG | 0.381591 | 4.4:+39004174 | None:intergenic |
| AACCAAGGTGAGCGAGATGC+TGG | 0.402351 | 4.4:-39000616 | MS.gene28314:CDS |
| TGCTATTGTAAGTTCGTTTG+AGG | 0.410005 | 4.4:-39003976 | MS.gene28314:CDS |
| AGCTCAACTTGATCAGCAAA+AGG | 0.437200 | 4.4:-39001921 | MS.gene28314:CDS |
| CCTCTCGCCACTTCCTTCTT+CGG | 0.437920 | 4.4:-39004303 | MS.gene28314:CDS |
| GGAGTCCCAAGCTGAAGCTC+TGG | 0.443194 | 4.4:-38999339 | MS.gene28314:CDS |
| GCGAAGCCGGTGCGAGGTGG+AGG | 0.444588 | 4.4:-39004148 | MS.gene28314:CDS |
| GGTGGAGGAGCGATTGGTGC+AGG | 0.452523 | 4.4:-39004133 | MS.gene28314:CDS |
| AAACTTTGCAGATTGAGCTC+TGG | 0.463191 | 4.4:+39000739 | None:intergenic |
| AGGAATGAAGATTGCGAAGC+CGG | 0.463659 | 4.4:-39004161 | MS.gene28314:CDS |
| CAGAAAGGAGAGCTTCCTCC+TGG | 0.470715 | 4.4:-38996422 | MS.gene28314:CDS |
| AACTAACTTGTGCTGTAGCT+TGG | 0.486023 | 4.4:+39003892 | None:intergenic |
| TCCTTCTTCGGCACTAGACC+AGG | 0.503540 | 4.4:-39004291 | MS.gene28314:intron |
| CTGACCCAGAGCTTCAGCTT+GGG | 0.503821 | 4.4:+38999334 | None:intergenic |
| AAGTTGAGCTTTCAAAGCAC+TGG | 0.504664 | 4.4:+39001934 | None:intergenic |
| GAAGCATACCTTTGAGCTAC+CGG | 0.513497 | 4.4:+38996696 | None:intergenic |
| TCCCAGCATCTCGCTCACCT+TGG | 0.521392 | 4.4:+39000614 | None:intergenic |
| GAAGATTGAAGTGGTGCGGA+GGG | 0.523856 | 4.4:+39004348 | None:intergenic |
| GTGCGAGGTGGAGGAGCGAT+TGG | 0.524184 | 4.4:-39004139 | MS.gene28314:CDS |
| AGAAGATTGAAGTGGTGCGG+AGG | 0.527050 | 4.4:+39004347 | None:intergenic |
| ACTGACCCAGAGCTTCAGCT+TGG | 0.533309 | 4.4:+38999333 | None:intergenic |
| TTGACAAGTGATGATCTTGA+AGG | 0.534037 | 4.4:-38999311 | MS.gene28314:CDS |
| AGAAGAAGATTGAAGTGGTG+CGG | 0.538986 | 4.4:+39004344 | None:intergenic |
| TCAGGAGGCGAGGTCGAAGA+AGG | 0.540578 | 4.4:-39000774 | MS.gene28314:CDS |
| ATTCTTTCTTCAAATTTGCA+AGG | 0.545092 | 4.4:+38996722 | None:intergenic |
| TCAATATCAGCATCTCGTAA+TGG | 0.547460 | 4.4:+38996374 | None:intergenic |
| TTCCTTTAGGACTTCAACCA+AGG | 0.549139 | 4.4:-39000631 | MS.gene28314:intron |
| ACCTGGTCTAGTGCCGAAGA+AGG | 0.550593 | 4.4:+39004290 | None:intergenic |
| GAGTCCCAAGCTGAAGCTCT+GGG | 0.560277 | 4.4:-38999338 | MS.gene28314:CDS |
| AAGTGATGATCTTGAAGGGA+AGG | 0.560391 | 4.4:-38999306 | MS.gene28314:intron |
| GCACAACTTGCTCTTCAGAA+AGG | 0.564967 | 4.4:-39003031 | MS.gene28314:CDS |
| AGAATTATCCGGTAGCTCAA+AGG | 0.566784 | 4.4:-38996704 | MS.gene28314:intron |
| TCTAGTGCCGAAGAAGGAAG+TGG | 0.569551 | 4.4:+39004296 | None:intergenic |
| GCTCAACTTGATCAGCAAAA+GGG | 0.571576 | 4.4:-39001920 | MS.gene28314:CDS |
| ATCGCTCCTCCACCTCGCAC+CGG | 0.579617 | 4.4:+39004142 | None:intergenic |
| AATTTGAAGAAAGAATTATC+CGG | 0.583913 | 4.4:-38996715 | MS.gene28314:CDS |
| GGAAGAAGTAGCACTAGGAC+TGG | 0.585998 | 4.4:-38996401 | MS.gene28314:CDS |
| TGACAAGTGATGATCTTGAA+GGG | 0.586970 | 4.4:-38999310 | MS.gene28314:CDS |
| ACCAAGGTGAGCGAGATGCT+GGG | 0.593815 | 4.4:-39000615 | MS.gene28314:CDS |
| ATTGCGAAGCCGGTGCGAGG+TGG | 0.597770 | 4.4:-39004151 | MS.gene28314:CDS |
| CAACACAAGCTTCTGAAGAG+TGG | 0.599112 | 4.4:-39003150 | MS.gene28314:intron |
| ACGAGATGCTGATATTGAGA+TGG | 0.599296 | 4.4:-38996369 | MS.gene28314:CDS |
| CTCCTGGAAGAAGTAGCACT+AGG | 0.602508 | 4.4:-38996406 | MS.gene28314:CDS |
| GAGGAAGAAGAAGATTGAAG+TGG | 0.604277 | 4.4:+39004339 | None:intergenic |
| TATCTTAATAGTGATGACAA+TGG | 0.609696 | 4.4:-38999360 | MS.gene28314:intron |
| AAGATTTACGAGAGTCGTGA+AGG | 0.612658 | 4.4:-39004095 | MS.gene28314:intron |
| AAGATTGCGAAGCCGGTGCG+AGG | 0.617109 | 4.4:-39004154 | MS.gene28314:CDS |
| GAGAGGCTTTCGGAGAGAAG+AGG | 0.619277 | 4.4:+39004320 | None:intergenic |
| ACGGATGGAAAATAAATACA+AGG | 0.623103 | 4.4:-39003176 | MS.gene28314:CDS |
| TTTGGAGAGTAAAATTCAGG+AGG | 0.632036 | 4.4:-39000789 | MS.gene28314:CDS |
| TCAACTGAGACAAAGATCAA+AGG | 0.633129 | 4.4:-38996339 | MS.gene28314:CDS |
| GCAAACACCGTGAAATTCAG+AGG | 0.634304 | 4.4:-39004181 | MS.gene28314:CDS |
| CCGAAGAAGGAAGTGGCGAG+AGG | 0.640427 | 4.4:+39004303 | None:intergenic |
| ACAGTCTTGTCTCAAATACA+CGG | 0.649426 | 4.4:-39001889 | MS.gene28314:CDS |
| AGAGTAAAATTCAGGAGGCG+AGG | 0.657033 | 4.4:-39000784 | MS.gene28314:CDS |
| CAGTCTTGTCTCAAATACAC+GGG | 0.662428 | 4.4:-39001888 | MS.gene28314:intron |
| CTGGGAAATGTCAATACAAG+TGG | 0.671165 | 4.4:-39000597 | MS.gene28314:CDS |
| TTGCTCGTGAAGCACTTAAG+CGG | 0.691632 | 4.4:-39002997 | MS.gene28314:CDS |
| CTAGTGCTACTTCTTCCAGG+AGG | 0.756317 | 4.4:+38996407 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 38996331 | 39004403 | 38996331 | ID=MS.gene28314 |
| chr4.4 | mRNA | 38996331 | 39004403 | 38996331 | ID=MS.gene28314.t1;Parent=MS.gene28314 |
| chr4.4 | exon | 39004292 | 39004403 | 39004292 | ID=MS.gene28314.t1.exon1;Parent=MS.gene28314.t1 |
| chr4.4 | CDS | 39004292 | 39004403 | 39004292 | ID=cds.MS.gene28314.t1;Parent=MS.gene28314.t1 |
| chr4.4 | exon | 39004096 | 39004202 | 39004096 | ID=MS.gene28314.t1.exon2;Parent=MS.gene28314.t1 |
| chr4.4 | CDS | 39004096 | 39004202 | 39004096 | ID=cds.MS.gene28314.t1;Parent=MS.gene28314.t1 |
| chr4.4 | exon | 39003899 | 39004009 | 39003899 | ID=MS.gene28314.t1.exon3;Parent=MS.gene28314.t1 |
| chr4.4 | CDS | 39003899 | 39004009 | 39003899 | ID=cds.MS.gene28314.t1;Parent=MS.gene28314.t1 |
| chr4.4 | exon | 39003151 | 39003215 | 39003151 | ID=MS.gene28314.t1.exon4;Parent=MS.gene28314.t1 |
| chr4.4 | CDS | 39003151 | 39003215 | 39003151 | ID=cds.MS.gene28314.t1;Parent=MS.gene28314.t1 |
| chr4.4 | exon | 39002982 | 39003063 | 39002982 | ID=MS.gene28314.t1.exon5;Parent=MS.gene28314.t1 |
| chr4.4 | CDS | 39002982 | 39003063 | 39002982 | ID=cds.MS.gene28314.t1;Parent=MS.gene28314.t1 |
| chr4.4 | exon | 39001889 | 39001963 | 39001889 | ID=MS.gene28314.t1.exon6;Parent=MS.gene28314.t1 |
| chr4.4 | CDS | 39001889 | 39001963 | 39001889 | ID=cds.MS.gene28314.t1;Parent=MS.gene28314.t1 |
| chr4.4 | exon | 39000743 | 39000813 | 39000743 | ID=MS.gene28314.t1.exon7;Parent=MS.gene28314.t1 |
| chr4.4 | CDS | 39000743 | 39000813 | 39000743 | ID=cds.MS.gene28314.t1;Parent=MS.gene28314.t1 |
| chr4.4 | exon | 39000562 | 39000644 | 39000562 | ID=MS.gene28314.t1.exon8;Parent=MS.gene28314.t1 |
| chr4.4 | CDS | 39000562 | 39000644 | 39000562 | ID=cds.MS.gene28314.t1;Parent=MS.gene28314.t1 |
| chr4.4 | exon | 38999307 | 38999371 | 38999307 | ID=MS.gene28314.t1.exon9;Parent=MS.gene28314.t1 |
| chr4.4 | CDS | 38999307 | 38999371 | 38999307 | ID=cds.MS.gene28314.t1;Parent=MS.gene28314.t1 |
| chr4.4 | exon | 38996705 | 38996779 | 38996705 | ID=MS.gene28314.t1.exon10;Parent=MS.gene28314.t1 |
| chr4.4 | CDS | 38996705 | 38996779 | 38996705 | ID=cds.MS.gene28314.t1;Parent=MS.gene28314.t1 |
| chr4.4 | exon | 38996331 | 38996441 | 38996331 | ID=MS.gene28314.t1.exon11;Parent=MS.gene28314.t1 |
| chr4.4 | CDS | 38996331 | 38996441 | 38996331 | ID=cds.MS.gene28314.t1;Parent=MS.gene28314.t1 |
| Gene Sequence |
| Protein sequence |
