AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene069857


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069857.t1 MTR_2g101400 96.542 347 12 0 1 347 1 347 0.0 700
MS.gene069857.t1 MTR_7g086110 67.081 322 105 1 26 346 4 325 1.02e-164 462
MS.gene069857.t1 MTR_2g067760 62.500 328 121 2 17 344 21 346 2.49e-156 442
MS.gene069857.t1 MTR_2g451450 58.086 303 126 1 27 329 30 331 2.01e-127 368
MS.gene069857.t1 MTR_2g451450 62.882 229 84 1 113 341 1 228 1.50e-104 306
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069857.t1 AT3G12740 64.024 328 116 2 17 344 23 348 1.29e-156 443
MS.gene069857.t1 AT1G54320 62.805 328 120 2 17 344 22 347 4.71e-154 437
MS.gene069857.t1 AT1G79450 62.538 331 122 2 17 347 22 350 1.27e-152 433
MS.gene069857.t1 AT1G16360 62.006 329 123 2 16 344 21 347 5.61e-152 431
MS.gene069857.t1 AT1G16360 61.755 319 120 2 26 344 17 333 2.99e-146 416
MS.gene069857.t1 AT1G16360 60.855 304 117 2 26 329 17 318 5.90e-136 390
MS.gene069857.t1 AT1G79450 61.649 279 105 2 69 347 7 283 2.99e-124 358
MS.gene069857.t1 AT5G46150 52.632 342 157 3 1 341 1 338 2.01e-119 348
MS.gene069857.t1 AT5G46150 52.632 342 157 3 1 341 1 338 2.01e-119 348
MS.gene069857.t1 AT5G46150 52.727 330 154 2 1 329 1 329 2.80e-116 340
MS.gene069857.t1 AT1G16360 55.502 209 91 2 26 234 17 223 1.11e-79 243
MS.gene069857.t1 AT1G16360 55.502 209 91 2 26 234 17 223 1.11e-79 243
MS.gene069857.t1 AT5G46150 49.145 234 117 2 1 233 1 233 3.24e-74 229

Find 59 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCATACATTTAGGTTTCT+TGG 0.257657 2.1:+3769281 None:intergenic
GGAATCATCTTTATCCCTAT+TGG 0.278510 2.1:-3768685 MS.gene069857:CDS
CTATCCTTGTTCTGTGCTAT+AGG 0.299641 2.1:-3767101 MS.gene069857:CDS
ATTGCCACATTTACTGCAAT+TGG 0.348370 2.1:-3768706 MS.gene069857:CDS
TTTCAGAGTGGAGGTTTGAT+TGG 0.358409 2.1:-3767692 MS.gene069857:CDS
ACCCATCCAGGTGTTAGAAT+TGG 0.365146 2.1:+3768958 None:intergenic
GTTGTCCATTGAAAATTTGT+AGG 0.382564 2.1:+3767799 None:intergenic
AACAATGATGCAAGACCAAT+AGG 0.394455 2.1:+3768670 None:intergenic
AACAAGAGGATCTGATTGTT+TGG 0.396536 2.1:-3767331 MS.gene069857:CDS
GGGATTGCATACCTTGTTGT+TGG 0.410908 2.1:-3767128 MS.gene069857:CDS
CAGAGTGGAGGTTTGATTGG+AGG 0.413776 2.1:-3767689 MS.gene069857:CDS
CCAACTTTCAGAAAACTGTA+TGG 0.436379 2.1:-3767290 MS.gene069857:CDS
ACAAGACTTGCACCCACAAA+TGG 0.438149 2.1:-3768452 MS.gene069857:CDS
CAACTACAACTTGGATTGGT+GGG 0.445444 2.1:-3767166 MS.gene069857:CDS
ATGAGGCCACAAGGAACAAT+TGG 0.445844 2.1:+3767845 None:intergenic
TTCCTTGTGGCCTCATTGCA+TGG 0.449722 2.1:-3767838 MS.gene069857:CDS
TACAACACATACGAGTTTCA+AGG 0.464659 2.1:-3767209 MS.gene069857:CDS
GTTAGAATTGGTTTCCATGC+AGG 0.464924 2.1:+3768970 None:intergenic
GGGATCCATCCTACTTATCA+TGG 0.480170 2.1:-3766760 MS.gene069857:CDS
ATTGCATACCTTGTTGTTGG+TGG 0.482393 2.1:-3767125 MS.gene069857:CDS
GTGGGTGCAAGTCTTGTTAG+TGG 0.484884 2.1:+3768458 None:intergenic
CTATCAACTACAACTTGGAT+TGG 0.485356 2.1:-3767170 MS.gene069857:CDS
TTATCATGGAACAGAAATCC+AGG 0.490301 2.1:-3766746 MS.gene069857:CDS
TGATGAAGTCATATCCATCA+TGG 0.492388 2.1:+3769341 None:intergenic
GTAGAAATGATAAGCAGTTG+TGG 0.499291 2.1:-3767931 MS.gene069857:CDS
TTTGATAGTAATTATCAAGC+TGG 0.503169 2.1:+3768301 None:intergenic
CTGTTCCATGATAAGTAGGA+TGG 0.511626 2.1:+3766755 None:intergenic
ATTTCTGTTCCATGATAAGT+AGG 0.512059 2.1:+3766751 None:intergenic
GTTTCAAGGTAGGAAGAAGT+TGG 0.512965 2.1:-3767195 MS.gene069857:CDS
ACAATGATGCAAGACCAATA+GGG 0.513968 2.1:+3768671 None:intergenic
ACCAATTCTAACACCTGGAT+GGG 0.523126 2.1:-3768959 MS.gene069857:intron
TGGTTCTATCAACTACAACT+TGG 0.538526 2.1:-3767175 MS.gene069857:CDS
ATGTACTAACAATCCATTTG+TGG 0.539027 2.1:+3768439 None:intergenic
CAACTTTCAGAAAACTGTAT+GGG 0.539444 2.1:-3767289 MS.gene069857:CDS
GATATGACTTCATCAAAAGA+TGG 0.544518 2.1:-3769333 MS.gene069857:CDS
AACCAATTCTAACACCTGGA+TGG 0.544797 2.1:-3768960 MS.gene069857:CDS
GTTGCATATTATACCCATCC+AGG 0.548338 2.1:+3768946 None:intergenic
TCAACTACAACTTGGATTGG+TGG 0.549590 2.1:-3767167 MS.gene069857:CDS
AACTGCATCTTTAGCATCAG+AGG 0.555713 2.1:+3768500 None:intergenic
AGTAGACAAAACAGAAGGAA+AGG 0.558583 2.1:-3767870 MS.gene069857:CDS
TTGTGGAGAAAGTCAGCTGA+AGG 0.563848 2.1:-3767914 MS.gene069857:CDS
CTCCATGCAATGAGGCCACA+AGG 0.565861 2.1:+3767836 None:intergenic
GCATCAGTTGAGTGAACAAG+AGG 0.573104 2.1:-3767345 MS.gene069857:intron
TGGAAACCAATTCTAACACC+TGG 0.581766 2.1:-3768964 MS.gene069857:CDS
GAATCCTATAGCACAGAACA+AGG 0.595106 2.1:+3767097 None:intergenic
ATTACTATCAAAATCATCGC+CGG 0.596581 2.1:-3768290 MS.gene069857:intron
GATTCCAATTGCAGTAAATG+TGG 0.597750 2.1:+3768702 None:intergenic
TTCTGTATGTGATCAAGCCA+AGG 0.598227 2.1:-3767070 MS.gene069857:intron
CACAGCAAGAACTACCTGCA+TGG 0.603633 2.1:-3768984 MS.gene069857:CDS
TGTACTAACAATCCATTTGT+GGG 0.623733 2.1:+3768440 None:intergenic
TATCATGGAACAGAAATCCA+GGG 0.639144 2.1:-3766745 MS.gene069857:CDS
AGGATAGTCCACCAACAACA+AGG 0.647718 2.1:+3767117 None:intergenic
ACTGCATCTTTAGCATCAGA+GGG 0.648958 2.1:+3768501 None:intergenic
TGTGGAGAAAGTCAGCTGAA+GGG 0.651423 2.1:-3767913 MS.gene069857:CDS
GATCCAGTAGACAAAACAGA+AGG 0.655095 2.1:-3767875 MS.gene069857:CDS
TGAACATACTCCATGCAATG+AGG 0.658438 2.1:+3767828 None:intergenic
AAGGAGCCAATTGTTCCTTG+TGG 0.669710 2.1:-3767851 MS.gene069857:CDS
ACACATACGAGTTTCAAGGT+AGG 0.677272 2.1:-3767205 MS.gene069857:CDS
AAGTAGGATGGATCCCCAAG+AGG 0.710797 2.1:+3766767 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTGTTTTTTTTTTTTTTT+TGG + chr2.1:3766923-3766942 None:intergenic 10.0%
!!! TTTAGACAAAAATTATATTT+TGG + chr2.1:3767223-3767242 None:intergenic 10.0%
!! ACTAATTATTATTTCCATTT+AGG + chr2.1:3767699-3767718 None:intergenic 15.0%
!! ATAAAAATCTTGGAAAATTT+AGG - chr2.1:3766975-3766994 MS.gene069857:intron 15.0%
!! TAAAAATCTTGGAAAATTTA+GGG - chr2.1:3766976-3766995 MS.gene069857:intron 15.0%
!! TTTATGTTAGGAAATTAATA+TGG - chr2.1:3769195-3769214 MS.gene069857:intron 15.0%
!!! CAACTGAATTTTATTTATAA+TGG - chr2.1:3767487-3767506 MS.gene069857:intron 15.0%
!!! TATAATTTTTGTCTAAATCA+CGG - chr2.1:3767226-3767245 MS.gene069857:CDS 15.0%
!! AACAAAAACAAATTTACTTG+AGG - chr2.1:3768020-3768039 MS.gene069857:intron 20.0%
!! AGTGACAAAAATTCTAAATT+TGG - chr2.1:3768335-3768354 MS.gene069857:CDS 20.0%
!! ATCATCCAAAATCATATTAA+AGG + chr2.1:3768098-3768117 None:intergenic 20.0%
!! ATTAAACTGTTTATCCAAAT+AGG + chr2.1:3768441-3768460 None:intergenic 20.0%
!! GTTCTGATAAAATTTATGTT+AGG - chr2.1:3769183-3769202 MS.gene069857:intron 20.0%
!! TATTAAGAAACTGTAAGAAA+TGG + chr2.1:3767298-3767317 None:intergenic 20.0%
!! TTAAACTGTTTATCCAAATA+GGG + chr2.1:3768440-3768459 None:intergenic 20.0%
!!! ATTTTCAGTGTTATCAATTA+CGG - chr2.1:3767812-3767831 MS.gene069857:CDS 20.0%
!!! ATTTTCCAAGATTTTTATAC+AGG + chr2.1:3766973-3766992 None:intergenic 20.0%
!!! TTTATGTCTGTAATTTTATC+AGG - chr2.1:3767341-3767360 MS.gene069857:CDS 20.0%
!!! TTTTCATTTTCATACCTAAA+TGG - chr2.1:3767682-3767701 MS.gene069857:CDS 20.0%
! ACTTATACGTAAGTACTTAT+AGG + chr2.1:3768479-3768498 None:intergenic 25.0%
! CAAATTGTAAGTGCAAATTA+AGG + chr2.1:3766814-3766833 None:intergenic 25.0%
! GAATAATGAATCATTGTTTC+AGG + chr2.1:3766901-3766920 None:intergenic 25.0%
! TAATTAGTTGCAAACTTTAC+AGG - chr2.1:3767711-3767730 MS.gene069857:CDS 25.0%
!! AAGAAAAGCTGAAACATTTT+TGG - chr2.1:3769228-3769247 MS.gene069857:intron 25.0%
!! TATCCTAAAAATTTTCAGAG+TGG - chr2.1:3768368-3768387 MS.gene069857:intron 25.0%
!! TGATGCCTTTAATATGATTT+TGG - chr2.1:3768090-3768109 MS.gene069857:intron 25.0%
!! TTGCTTATTTCTCAAGTAAA+AGG + chr2.1:3768690-3768709 None:intergenic 25.0%
!! TTGGAAGTTTTCTTTGAATT+TGG + chr2.1:3766775-3766794 None:intergenic 25.0%
!! TTTGATAGTAATTATCAAGC+TGG + chr2.1:3767774-3767793 None:intergenic 25.0%
!!! GCTTTTTCTATACTACTTTA+TGG - chr2.1:3769040-3769059 MS.gene069857:intron 25.0%
AACAAAAAGAACATAGCATG+GGG - chr2.1:3768311-3768330 MS.gene069857:CDS 30.0%
ACATCATAGGAAGAAAAAGA+AGG + chr2.1:3766876-3766895 None:intergenic 30.0%
ATGTACTAACAATCCATTTG+TGG + chr2.1:3767636-3767655 None:intergenic 30.0%
ATTACTATCAAAATCATCGC+CGG - chr2.1:3767782-3767801 MS.gene069857:CDS 30.0%
ATTTCTGTTCCATGATAAGT+AGG + chr2.1:3769324-3769343 None:intergenic 30.0%
CAACAAAAAGAACATAGCAT+GGG - chr2.1:3768310-3768329 MS.gene069857:CDS 30.0%
CAACTTTCAGAAAACTGTAT+GGG - chr2.1:3768783-3768802 MS.gene069857:intron 30.0%
CATTTGTTCCTTGTGATTTA+CGG - chr2.1:3766945-3766964 MS.gene069857:intron 30.0%
GAAGTGCATGCTTAAATTAA+CGG + chr2.1:3767276-3767295 None:intergenic 30.0%
GATATGACTTCATCAAAAGA+TGG - chr2.1:3766739-3766758 MS.gene069857:CDS 30.0%
GCAAAATATTTCCTTTACCT+TGG + chr2.1:3769022-3769041 None:intergenic 30.0%
GCAAATTAAGGCATACATTT+AGG + chr2.1:3766802-3766821 None:intergenic 30.0%
GTTGTCCATTGAAAATTTGT+AGG + chr2.1:3768276-3768295 None:intergenic 30.0%
TAAAGAAATACTAATGCAGG+TGG - chr2.1:3767510-3767529 MS.gene069857:intron 30.0%
TCAACAAAAAGAACATAGCA+TGG - chr2.1:3768309-3768328 MS.gene069857:CDS 30.0%
TGGTAAAGAAATACTAATGC+AGG - chr2.1:3767507-3767526 MS.gene069857:intron 30.0%
TGTACTAACAATCCATTTGT+GGG + chr2.1:3767635-3767654 None:intergenic 30.0%
TTTCCATAAGCTCTTTCAAA+CGG - chr2.1:3768607-3768626 MS.gene069857:intron 30.0%
! AATTTTTGTCTAAATCACGG+TGG - chr2.1:3767229-3767248 MS.gene069857:CDS 30.0%
! CAAATTTTCAATGGACAACA+AGG - chr2.1:3768277-3768296 MS.gene069857:intron 30.0%
! GAAGTTTTCTTTGAATTTGG+AGG + chr2.1:3766772-3766791 None:intergenic 30.0%
! TGACACCTACAAATTTTCAA+TGG - chr2.1:3768268-3768287 MS.gene069857:intron 30.0%
! TTGAATACGCTCTTTTCTAT+TGG - chr2.1:3769147-3769166 MS.gene069857:intron 30.0%
! TTGCATCATTGTTTTCATCA+GGG - chr2.1:3767412-3767431 MS.gene069857:intron 30.0%
!! ATTGTTTCAGGTTACATCAT+AGG + chr2.1:3766889-3766908 None:intergenic 30.0%
AACAAGAGGATCTGATTGTT+TGG - chr2.1:3768741-3768760 MS.gene069857:intron 35.0%
AACAATGATGCAAGACCAAT+AGG + chr2.1:3767405-3767424 None:intergenic 35.0%
AACACTGAAAATGTGCATAC+CGG + chr2.1:3767804-3767823 None:intergenic 35.0%
ACAATGATGCAAGACCAATA+GGG + chr2.1:3767404-3767423 None:intergenic 35.0%
AGCTGGTAGTAGATAAAAAC+AGG + chr2.1:3767757-3767776 None:intergenic 35.0%
AGTAGACAAAACAGAAGGAA+AGG - chr2.1:3768202-3768221 MS.gene069857:intron 35.0%
ATTGCCACATTTACTGCAAT+TGG - chr2.1:3767366-3767385 MS.gene069857:intron 35.0%
CCAACTTTCAGAAAACTGTA+TGG - chr2.1:3768782-3768801 MS.gene069857:intron 35.0%
CGTAAATCACAAGGAACAAA+TGG + chr2.1:3766947-3766966 None:intergenic 35.0%
CTATCAACTACAACTTGGAT+TGG - chr2.1:3768902-3768921 MS.gene069857:intron 35.0%
GATTCCAATTGCAGTAAATG+TGG + chr2.1:3767373-3767392 None:intergenic 35.0%
GGAATCATCTTTATCCCTAT+TGG - chr2.1:3767387-3767406 MS.gene069857:intron 35.0%
GGTGGGAAAAATAGATTCTT+GGG - chr2.1:3768923-3768942 MS.gene069857:intron 35.0%
GTAGAAATGATAAGCAGTTG+TGG - chr2.1:3768141-3768160 MS.gene069857:intron 35.0%
GTGGGAAAAATAGATTCTTG+GGG - chr2.1:3768924-3768943 MS.gene069857:intron 35.0%
GTGTTATCAATTACGGATCA+CGG - chr2.1:3767819-3767838 MS.gene069857:CDS 35.0%
TACAACACATACGAGTTTCA+AGG - chr2.1:3768863-3768882 MS.gene069857:intron 35.0%
TATCATGGAACAGAAATCCA+GGG - chr2.1:3769327-3769346 MS.gene069857:CDS 35.0%
TGGTGGGAAAAATAGATTCT+TGG - chr2.1:3768922-3768941 MS.gene069857:intron 35.0%
TTATCATGGAACAGAAATCC+AGG - chr2.1:3769326-3769345 MS.gene069857:CDS 35.0%
TTATCCAAATAGGGACTTAC+AGG + chr2.1:3768431-3768450 None:intergenic 35.0%
! AGGCATACATTTAGGTTTCT+TGG + chr2.1:3766794-3766813 None:intergenic 35.0%
! ATCATTGTTTTCATCAGGGA+AGG - chr2.1:3767416-3767435 MS.gene069857:intron 35.0%
! CCTAAAAATTTTCAGAGTGG+AGG - chr2.1:3768371-3768390 MS.gene069857:intron 35.0%
! CTTGCATCATTGTTTTCATC+AGG - chr2.1:3767411-3767430 MS.gene069857:intron 35.0%
! TGGTTCTATCAACTACAACT+TGG - chr2.1:3768897-3768916 MS.gene069857:intron 35.0%
! TTAGTGCATGTTTGAAACCA+CGG - chr2.1:3767162-3767181 MS.gene069857:CDS 35.0%
! TTTCCTTCTGTTTTGTCTAC+TGG + chr2.1:3768203-3768222 None:intergenic 35.0%
!! CCATACAGTTTTCTGAAAGT+TGG + chr2.1:3768785-3768804 None:intergenic 35.0%
!! CCTCCACTCTGAAAATTTTT+AGG + chr2.1:3768374-3768393 None:intergenic 35.0%
AACCAATTCTAACACCTGGA+TGG - chr2.1:3767112-3767131 MS.gene069857:CDS 40.0%
AACTGCATCTTTAGCATCAG+AGG + chr2.1:3767575-3767594 None:intergenic 40.0%
ACACATACGAGTTTCAAGGT+AGG - chr2.1:3768867-3768886 MS.gene069857:intron 40.0%
ACCAATTCTAACACCTGGAT+GGG - chr2.1:3767113-3767132 MS.gene069857:CDS 40.0%
ACTGCATCTTTAGCATCAGA+GGG + chr2.1:3767574-3767593 None:intergenic 40.0%
AGAAATACTAATGCAGGTGG+TGG - chr2.1:3767513-3767532 MS.gene069857:intron 40.0%
ATGTGATCAAGCCAAGGTAA+AGG - chr2.1:3769008-3769027 MS.gene069857:intron 40.0%
CATACCTGTAAGTCCCTATT+TGG - chr2.1:3768424-3768443 MS.gene069857:intron 40.0%
CGGAGCCTGTATAAAAATCT+TGG - chr2.1:3766965-3766984 MS.gene069857:intron 40.0%
CTATCCTTGTTCTGTGCTAT+AGG - chr2.1:3768971-3768990 MS.gene069857:CDS 40.0%
CTGTTCCATGATAAGTAGGA+TGG + chr2.1:3769320-3769339 None:intergenic 40.0%
GAATCCTATAGCACAGAACA+AGG + chr2.1:3768978-3768997 None:intergenic 40.0%
GATCCAGTAGACAAAACAGA+AGG - chr2.1:3768197-3768216 MS.gene069857:intron 40.0%
GTTGCATATTATACCCATCC+AGG + chr2.1:3767129-3767148 None:intergenic 40.0%
GTTTCAAGGTAGGAAGAAGT+TGG - chr2.1:3768877-3768896 MS.gene069857:intron 40.0%
TCATTGAAAATCGTGCTGTG+TGG + chr2.1:3768000-3768019 None:intergenic 40.0%
TGAACATACTCCATGCAATG+AGG + chr2.1:3768247-3768266 None:intergenic 40.0%
TGACCGTTTGAAAGAGCTTA+TGG + chr2.1:3768613-3768632 None:intergenic 40.0%
TGGAAACCAATTCTAACACC+TGG - chr2.1:3767108-3767127 MS.gene069857:CDS 40.0%
TTCTGTATGTGATCAAGCCA+AGG - chr2.1:3769002-3769021 MS.gene069857:intron 40.0%
TTTCAGAGTGGAGGTTTGAT+TGG - chr2.1:3768380-3768399 MS.gene069857:intron 40.0%
! CTTGGAAAATTTAGGGCTTG+AGG - chr2.1:3766983-3767002 MS.gene069857:intron 40.0%
! GTTAGAATTGGTTTCCATGC+AGG + chr2.1:3767105-3767124 None:intergenic 40.0%
! TCAACTACAACTTGGATTGG+TGG - chr2.1:3768905-3768924 MS.gene069857:intron 40.0%
! TTTTGTCTACTGGATCACAG+TGG + chr2.1:3768193-3768212 None:intergenic 40.0%
!! ATTGCATACCTTGTTGTTGG+TGG - chr2.1:3768947-3768966 MS.gene069857:intron 40.0%
!! CAACTACAACTTGGATTGGT+GGG - chr2.1:3768906-3768925 MS.gene069857:intron 40.0%
AAGGAGCCAATTGTTCCTTG+TGG - chr2.1:3768221-3768240 MS.gene069857:intron 45.0%
ACAAGACTTGCACCCACAAA+TGG - chr2.1:3767620-3767639 MS.gene069857:intron 45.0%
ACCCATCCAGGTGTTAGAAT+TGG + chr2.1:3767117-3767136 None:intergenic 45.0%
AGGATAGTCCACCAACAACA+AGG + chr2.1:3768958-3768977 None:intergenic 45.0%
ATGAGGCCACAAGGAACAAT+TGG + chr2.1:3768230-3768249 None:intergenic 45.0%
GCATCAGTTGAGTGAACAAG+AGG - chr2.1:3768727-3768746 MS.gene069857:intron 45.0%
GGGATCCATCCTACTTATCA+TGG - chr2.1:3769312-3769331 MS.gene069857:CDS 45.0%
TACAGGCTCCGTAAATCACA+AGG + chr2.1:3766956-3766975 None:intergenic 45.0%
TGATATTGTCAAACTCGCCG+TGG + chr2.1:3767182-3767201 None:intergenic 45.0%
TGTGGAGAAAGTCAGCTGAA+GGG - chr2.1:3768159-3768178 MS.gene069857:intron 45.0%
TTGTGGAGAAAGTCAGCTGA+AGG - chr2.1:3768158-3768177 MS.gene069857:intron 45.0%
! CTCTTTTTGCAGACCTCTTG+GGG - chr2.1:3769292-3769311 MS.gene069857:CDS 45.0%
! GCTCTTTTTGCAGACCTCTT+GGG - chr2.1:3769291-3769310 MS.gene069857:CDS 45.0%
! GGGATTGCATACCTTGTTGT+TGG - chr2.1:3768944-3768963 MS.gene069857:intron 45.0%
! TGCTCTTTTTGCAGACCTCT+TGG - chr2.1:3769290-3769309 MS.gene069857:CDS 45.0%
AAGTAGGATGGATCCCCAAG+AGG + chr2.1:3769308-3769327 None:intergenic 50.0%
CACAGCAAGAACTACCTGCA+TGG - chr2.1:3767088-3767107 MS.gene069857:CDS 50.0%
CAGAGTGGAGGTTTGATTGG+AGG - chr2.1:3768383-3768402 MS.gene069857:intron 50.0%
TTCCTTGTGGCCTCATTGCA+TGG - chr2.1:3768234-3768253 MS.gene069857:intron 50.0%
!! GTGGGTGCAAGTCTTGTTAG+TGG + chr2.1:3767617-3767636 None:intergenic 50.0%
CTCCATGCAATGAGGCCACA+AGG + chr2.1:3768239-3768258 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 3766733 3769361 3766733 ID=MS.gene069857
chr2.1 mRNA 3766733 3769361 3766733 ID=MS.gene069857.t1;Parent=MS.gene069857
chr2.1 exon 3769289 3769361 3769289 ID=MS.gene069857.t1.exon1;Parent=MS.gene069857.t1
chr2.1 CDS 3769289 3769361 3769289 ID=cds.MS.gene069857.t1;Parent=MS.gene069857.t1
chr2.1 exon 3768960 3769018 3768960 ID=MS.gene069857.t1.exon2;Parent=MS.gene069857.t1
chr2.1 CDS 3768960 3769018 3768960 ID=cds.MS.gene069857.t1;Parent=MS.gene069857.t1
chr2.1 exon 3768657 3768731 3768657 ID=MS.gene069857.t1.exon3;Parent=MS.gene069857.t1
chr2.1 CDS 3768657 3768731 3768657 ID=cds.MS.gene069857.t1;Parent=MS.gene069857.t1
chr2.1 exon 3768449 3768565 3768449 ID=MS.gene069857.t1.exon4;Parent=MS.gene069857.t1
chr2.1 CDS 3768449 3768565 3768449 ID=cds.MS.gene069857.t1;Parent=MS.gene069857.t1
chr2.1 exon 3768291 3768361 3768291 ID=MS.gene069857.t1.exon5;Parent=MS.gene069857.t1
chr2.1 CDS 3768291 3768361 3768291 ID=cds.MS.gene069857.t1;Parent=MS.gene069857.t1
chr2.1 exon 3767664 3767964 3767664 ID=MS.gene069857.t1.exon6;Parent=MS.gene069857.t1
chr2.1 CDS 3767664 3767964 3767664 ID=cds.MS.gene069857.t1;Parent=MS.gene069857.t1
chr2.1 exon 3767071 3767360 3767071 ID=MS.gene069857.t1.exon7;Parent=MS.gene069857.t1
chr2.1 CDS 3767071 3767360 3767071 ID=cds.MS.gene069857.t1;Parent=MS.gene069857.t1
chr2.1 exon 3766733 3766790 3766733 ID=MS.gene069857.t1.exon8;Parent=MS.gene069857.t1
chr2.1 CDS 3766733 3766790 3766733 ID=cds.MS.gene069857.t1;Parent=MS.gene069857.t1
Gene Sequence

>MS.gene069857

ATGATGGATATGACTTCATCAAAAGATGGACAATCTCCTCCAAATTCAAAGAAAACTTCCAAGAAACCTAAATGTATGCCTTAATTTGCACTTACAATTTGTTACATATATATCATATGATAACATGTCTTGTTTTTTTTCCTTCTTTTTCTTCCTATGATGTAACCTGAAACAATGATTCATTATTCCAAAAAAAAAAAAAAAACACAAACCATTTGTTCCTTGTGATTTACGGAGCCTGTATAAAAATCTTGGAAAATTTAGGGCTTGAGGCTGTTTCATATGTATAAAGTTGTGTTATATTATTATTGCTCATAGTTATTTGTTTTATTTTAATTTGTAGATTCAAGATTCTCACAGCAAGAACTACCTGCATGGAAACCAATTCTAACACCTGGATGGGTATAATATGCAACATAACTCATTTAATTAGTGCATGTTTGAAACCACGGCGAGTTTGACAATATCACGTGATTTTGTTGAAGTTCCAAAATATAATTTTTGTCTAAATCACGGTGGCACAAAATTCTACTATACTTACCGTTAATTTAAGCATGCACTTCCATTTCTTACAGTTTCTTAATATATGCAAAAATTTAATCAATGATTTTATGTCTGTAATTTTATCAGGTGATTGCCACATTTACTGCAATTGGAATCATCTTTATCCCTATTGGTCTTGCATCATTGTTTTCATCAGGGAAGGTAAGAACATAACAATGTATAGAATGAAATGAAGTTTTGCTACTGAATTCAACTGAATTTTATTTATAATGGTAAAGAAATACTAATGCAGGTGGTGGAAGCTGAATTCAGATATGATGAAACGTGTCTTTCTCCCTCTGATGCTAAAGATGCAGTTGCATATATTAAAAGTGATACCACTAACAAGACTTGCACCCACAAATGGATTGTTAGTACATTCACTTCTGTTTCACAAGAGTTTCATTTTTCATTTTCATACCTAAATGGAAATAATAATTAGTTGCAAACTTTACAGGTTGAGCAAAAAATGCAAGCTCCTGTTTTTATCTACTACCAGCTTGATAATTACTATCAAAATCATCGCCGGTATGCACATTTTCAGTGTTATCAATTACGGATCACGGAAAATATTAGTTTGTTCAAATTCTGCTACGCAACAGTGCTCTAGCATGCGCTATAGTCACTATTTCACAATATTTTGTACTAAATAGTGTATTGCAAAACAACAATGATTTGTTCAAATTTCACTATTCAGTTGCGCTAGAACGCTACTATTTGACCACACAGCACGATTTTCAATGAAACAAAAACAAATTTACTTGAGGCATATGCATATGTACAAATGCATACATTTGATGCTTATTATTTTTAATGATGCCTTTAATATGATTTTGGATGATTAACTCTTGCAGATATGTTAAGAGTAGAAATGATAAGCAGTTGTGGAGAAAGTCAGCTGAAGGGCAAACAGACCACTGTGATCCAGTAGACAAAACAGAAGGAAAGGAGCCAATTGTTCCTTGTGGCCTCATTGCATGGAGTATGTTCAATGACACCTACAAATTTTCAATGGACAACAAGGATTTAACTGTCAACAAAAAGAACATAGCATGGGGAAGTGACAAAAATTCTAAATTTGGTCGTGAAGTTTATCCTAAAAATTTTCAGAGTGGAGGTTTGATTGGAGGTGCAAAACTCAATGAAAGCATACCTGTAAGTCCCTATTTGGATAAACAGTTTAATTATATAAACACTTATCCTATAAGTACTTACGTATAAGTTATTTCTACGCTAAAGTATAAAATAAAACTGTTTTCGTAAGTTATTATGAAGAGCTTATGAAAATAAGCTGAATACAACTTATAGACATGTCTATAACAGTATAACTATTTCCATAAGCTCTTTCAAACGGTCACAATATATGACTTCACAAATTACTTTGTTTTTTTTTTCATGTGATAAAATATAACCTTTTACTTGAGAAATAAGCAATCTATGTATTGTTGCATGCATCAGTTGAGTGAACAAGAGGATCTGATTGTTTGGATGAGAACAGCAGCATTACCAACTTTCAGAAAACTGTATGGGAAGATAGAGTCTGATCTTGAAGTTAATGATGAGATAGAAATACTAATTCAGAACAATTACAACACATACGAGTTTCAAGGTAGGAAGAAGTTGGTTCTATCAACTACAACTTGGATTGGTGGGAAAAATAGATTCTTGGGGATTGCATACCTTGTTGTTGGTGGACTATCCTTGTTCTGTGCTATAGGATTCATTCTTCTGTATGTGATCAAGCCAAGGTAAAGGAAATATTTTGCTTTTTCTATACTACTTTATGGTTCTACATTTATTTTTTGAGTTAAGATCATGATTTTACATTATGAGATGTGAAATGCTAGCGAAACATTCTGTAACACTAGCATTTGAATACGCTCTTTTCTATTGGTTGAAATTGACAAGTTCTGATAAAATTTATGTTAGGAAATTAATATGGCTACATAGTAAAGAAAAGCTGAAACATTTTTGGTTATTTGTAAGTAGCAAATGTGAGCTAACATTACTATATTGCTCTTTTTGCAGACCTCTTGGGGATCCATCCTACTTATCATGGAACAGAAATCCAGGGATCTTAAAATGA

Protein sequence

>MS.gene069857.t1

MMDMTSSKDGQSPPNSKKTSKKPKYSRFSQQELPAWKPILTPGWVIATFTAIGIIFIPIGLASLFSSGKVVEAEFRYDETCLSPSDAKDAVAYIKSDTTNKTCTHKWIVEQKMQAPVFIYYQLDNYYQNHRRYVKSRNDKQLWRKSAEGQTDHCDPVDKTEGKEPIVPCGLIAWSMFNDTYKFSMDNKDLTVNKKNIAWGSDKNSKFGREVYPKNFQSGGLIGGAKLNESIPLSEQEDLIVWMRTAALPTFRKLYGKIESDLEVNDEIEILIQNNYNTYEFQGRKKLVLSTTTWIGGKNRFLGIAYLVVGGLSLFCAIGFILLYVIKPRPLGDPSYLSWNRNPGILK