AlfalfaGEDB | MS.gene069857

M. sativa cultivar XinJiangDaYe / MS.gene069857

KEGG: -
GO: GO:0005575 GO:0016020 GO:0110165
PFAM: PF03381.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069857.t1	XP_003597705.1	96.5	347	12	0	1	347	1	347	1.20E-195	692.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069857.t1	Q9LTW0	64.5	324	113	2	21	344	27	348	1.9e-120	433.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069857.t1	G7IUN2	96.5	347	12	0	1	347	1	347	8.9e-196	692.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene069857	0.823668	1.22E-53	-1.69E-46
MS.gene049171	MS.gene069857	0.828602	8.21E-55	-1.69E-46
MS.gene049173	MS.gene069857	0.801253	9.82E-49	-1.69E-46
MS.gene049217	MS.gene069857	0.842332	2.76E-58	-1.69E-46
MS.gene049222	MS.gene069857	0.865175	7.15E-65	-1.69E-46
MS.gene049232	MS.gene069857	0.833275	5.86E-56	-1.69E-46
MS.gene049285	MS.gene069857	0.832369	9.83E-56	-1.69E-46
MS.gene049320	MS.gene069857	0.837278	5.71E-57	-1.69E-46
MS.gene049369	MS.gene069857	0.805655	1.20E-49	-1.69E-46
MS.gene049396	MS.gene069857	0.850619	1.51E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069857.t1	MTR_2g101400	96.542	347	12	0	1	347	1	347	0.0	700
MS.gene069857.t1	MTR_7g086110	67.081	322	105	1	26	346	4	325	1.02e-164	462
MS.gene069857.t1	MTR_2g067760	62.500	328	121	2	17	344	21	346	2.49e-156	442
MS.gene069857.t1	MTR_2g451450	58.086	303	126	1	27	329	30	331	2.01e-127	368
MS.gene069857.t1	MTR_2g451450	62.882	229	84	1	113	341	1	228	1.50e-104	306

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene069857.t1	AT3G12740	64.024	328	116	2	17	344	23	348	1.29e-156	443
MS.gene069857.t1	AT1G54320	62.805	328	120	2	17	344	22	347	4.71e-154	437
MS.gene069857.t1	AT1G79450	62.538	331	122	2	17	347	22	350	1.27e-152	433
MS.gene069857.t1	AT1G16360	62.006	329	123	2	16	344	21	347	5.61e-152	431
MS.gene069857.t1	AT1G16360	61.755	319	120	2	26	344	17	333	2.99e-146	416
MS.gene069857.t1	AT1G16360	60.855	304	117	2	26	329	17	318	5.90e-136	390
MS.gene069857.t1	AT1G79450	61.649	279	105	2	69	347	7	283	2.99e-124	358
MS.gene069857.t1	AT5G46150	52.632	342	157	3	1	341	1	338	2.01e-119	348
MS.gene069857.t1	AT5G46150	52.632	342	157	3	1	341	1	338	2.01e-119	348
MS.gene069857.t1	AT5G46150	52.727	330	154	2	1	329	1	329	2.80e-116	340

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Find 59 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAGAGGATCTGATTGTT+TGG	0.396536	2.1:-3767331	MS.gene069857:CDS
AACAATGATGCAAGACCAAT+AGG	0.394455	2.1:+3768670	None:intergenic
AACCAATTCTAACACCTGGA+TGG	0.544797	2.1:-3768960	MS.gene069857:CDS
AACTGCATCTTTAGCATCAG+AGG	0.555713	2.1:+3768500	None:intergenic
AAGGAGCCAATTGTTCCTTG+TGG	0.669710	2.1:-3767851	MS.gene069857:CDS
AAGTAGGATGGATCCCCAAG+AGG	0.710797	2.1:+3766767	None:intergenic
ACAAGACTTGCACCCACAAA+TGG	0.438149	2.1:-3768452	MS.gene069857:CDS
ACAATGATGCAAGACCAATA+GGG	0.513968	2.1:+3768671	None:intergenic
ACACATACGAGTTTCAAGGT+AGG	0.677272	2.1:-3767205	MS.gene069857:CDS
ACCAATTCTAACACCTGGAT+GGG	0.523126	2.1:-3768959	MS.gene069857:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAAAAGAACATAGCATG+GGG	-	chr2.1:3768311-3768330	MS.gene069857:CDS	30.0%
ACATCATAGGAAGAAAAAGA+AGG	+	chr2.1:3766876-3766895	None:intergenic	30.0%
ATGTACTAACAATCCATTTG+TGG	+	chr2.1:3767636-3767655	None:intergenic	30.0%
ATTACTATCAAAATCATCGC+CGG	-	chr2.1:3767782-3767801	MS.gene069857:CDS	30.0%
ATTTCTGTTCCATGATAAGT+AGG	+	chr2.1:3769324-3769343	None:intergenic	30.0%
CAACAAAAAGAACATAGCAT+GGG	-	chr2.1:3768310-3768329	MS.gene069857:CDS	30.0%
CAACTTTCAGAAAACTGTAT+GGG	-	chr2.1:3768783-3768802	MS.gene069857:intron	30.0%
CATTTGTTCCTTGTGATTTA+CGG	-	chr2.1:3766945-3766964	MS.gene069857:intron	30.0%
GAAGTGCATGCTTAAATTAA+CGG	+	chr2.1:3767276-3767295	None:intergenic	30.0%
GATATGACTTCATCAAAAGA+TGG	-	chr2.1:3766739-3766758	MS.gene069857:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	3766733	3769361	3766733	ID=MS.gene069857
chr2.1	mRNA	3766733	3769361	3766733	ID=MS.gene069857.t1;Parent=MS.gene069857
chr2.1	exon	3769289	3769361	3769289	ID=MS.gene069857.t1.exon1;Parent=MS.gene069857.t1
chr2.1	CDS	3769289	3769361	3769289	ID=cds.MS.gene069857.t1;Parent=MS.gene069857.t1
chr2.1	exon	3768960	3769018	3768960	ID=MS.gene069857.t1.exon2;Parent=MS.gene069857.t1
chr2.1	CDS	3768960	3769018	3768960	ID=cds.MS.gene069857.t1;Parent=MS.gene069857.t1
chr2.1	exon	3768657	3768731	3768657	ID=MS.gene069857.t1.exon3;Parent=MS.gene069857.t1
chr2.1	CDS	3768657	3768731	3768657	ID=cds.MS.gene069857.t1;Parent=MS.gene069857.t1
chr2.1	exon	3768449	3768565	3768449	ID=MS.gene069857.t1.exon4;Parent=MS.gene069857.t1
chr2.1	CDS	3768449	3768565	3768449	ID=cds.MS.gene069857.t1;Parent=MS.gene069857.t1
chr2.1	exon	3768291	3768361	3768291	ID=MS.gene069857.t1.exon5;Parent=MS.gene069857.t1
chr2.1	CDS	3768291	3768361	3768291	ID=cds.MS.gene069857.t1;Parent=MS.gene069857.t1
chr2.1	exon	3767664	3767964	3767664	ID=MS.gene069857.t1.exon6;Parent=MS.gene069857.t1
chr2.1	CDS	3767664	3767964	3767664	ID=cds.MS.gene069857.t1;Parent=MS.gene069857.t1
chr2.1	exon	3767071	3767360	3767071	ID=MS.gene069857.t1.exon7;Parent=MS.gene069857.t1
chr2.1	CDS	3767071	3767360	3767071	ID=cds.MS.gene069857.t1;Parent=MS.gene069857.t1
chr2.1	exon	3766733	3766790	3766733	ID=MS.gene069857.t1.exon8;Parent=MS.gene069857.t1
chr2.1	CDS	3766733	3766790	3766733	ID=cds.MS.gene069857.t1;Parent=MS.gene069857.t1

Gene Sequence

>MS.gene069857

ATGATGGATATGACTTCATCAAAAGATGGACAATCTCCTCCAAATTCAAAGAAAACTTCCAAGAAACCTAAATGTATGCCTTAATTTGCACTTACAATTTGTTACATATATATCATATGATAACATGTCTTGTTTTTTTTCCTTCTTTTTCTTCCTATGATGTAACCTGAAACAATGATTCATTATTCCAAAAAAAAAAAAAAAACACAAACCATTTGTTCCTTGTGATTTACGGAGCCTGTATAAAAATCTTGGAAAATTTAGGGCTTGAGGCTGTTTCATATGTATAAAGTTGTGTTATATTATTATTGCTCATAGTTATTTGTTTTATTTTAATTTGTAGATTCAAGATTCTCACAGCAAGAACTACCTGCATGGAAACCAATTCTAACACCTGGATGGGTATAATATGCAACATAACTCATTTAATTAGTGCATGTTTGAAACCACGGCGAGTTTGACAATATCACGTGATTTTGTTGAAGTTCCAAAATATAATTTTTGTCTAAATCACGGTGGCACAAAATTCTACTATACTTACCGTTAATTTAAGCATGCACTTCCATTTCTTACAGTTTCTTAATATATGCAAAAATTTAATCAATGATTTTATGTCTGTAATTTTATCAGGTGATTGCCACATTTACTGCAATTGGAATCATCTTTATCCCTATTGGTCTTGCATCATTGTTTTCATCAGGGAAGGTAAGAACATAACAATGTATAGAATGAAATGAAGTTTTGCTACTGAATTCAACTGAATTTTATTTATAATGGTAAAGAAATACTAATGCAGGTGGTGGAAGCTGAATTCAGATATGATGAAACGTGTCTTTCTCCCTCTGATGCTAAAGATGCAGTTGCATATATTAAAAGTGATACCACTAACAAGACTTGCACCCACAAATGGATTGTTAGTACATTCACTTCTGTTTCACAAGAGTTTCATTTTTCATTTTCATACCTAAATGGAAATAATAATTAGTTGCAAACTTTACAGGTTGAGCAAAAAATGCAAGCTCCTGTTTTTATCTACTACCAGCTTGATAATTACTATCAAAATCATCGCCGGTATGCACATTTTCAGTGTTATCAATTACGGATCACGGAAAATATTAGTTTGTTCAAATTCTGCTACGCAACAGTGCTCTAGCATGCGCTATAGTCACTATTTCACAATATTTTGTACTAAATAGTGTATTGCAAAACAACAATGATTTGTTCAAATTTCACTATTCAGTTGCGCTAGAACGCTACTATTTGACCACACAGCACGATTTTCAATGAAACAAAAACAAATTTACTTGAGGCATATGCATATGTACAAATGCATACATTTGATGCTTATTATTTTTAATGATGCCTTTAATATGATTTTGGATGATTAACTCTTGCAGATATGTTAAGAGTAGAAATGATAAGCAGTTGTGGAGAAAGTCAGCTGAAGGGCAAACAGACCACTGTGATCCAGTAGACAAAACAGAAGGAAAGGAGCCAATTGTTCCTTGTGGCCTCATTGCATGGAGTATGTTCAATGACACCTACAAATTTTCAATGGACAACAAGGATTTAACTGTCAACAAAAAGAACATAGCATGGGGAAGTGACAAAAATTCTAAATTTGGTCGTGAAGTTTATCCTAAAAATTTTCAGAGTGGAGGTTTGATTGGAGGTGCAAAACTCAATGAAAGCATACCTGTAAGTCCCTATTTGGATAAACAGTTTAATTATATAAACACTTATCCTATAAGTACTTACGTATAAGTTATTTCTACGCTAAAGTATAAAATAAAACTGTTTTCGTAAGTTATTATGAAGAGCTTATGAAAATAAGCTGAATACAACTTATAGACATGTCTATAACAGTATAACTATTTCCATAAGCTCTTTCAAACGGTCACAATATATGACTTCACAAATTACTTTGTTTTTTTTTTCATGTGATAAAATATAACCTTTTACTTGAGAAATAAGCAATCTATGTATTGTTGCATGCATCAGTTGAGTGAACAAGAGGATCTGATTGTTTGGATGAGAACAGCAGCATTACCAACTTTCAGAAAACTGTATGGGAAGATAGAGTCTGATCTTGAAGTTAATGATGAGATAGAAATACTAATTCAGAACAATTACAACACATACGAGTTTCAAGGTAGGAAGAAGTTGGTTCTATCAACTACAACTTGGATTGGTGGGAAAAATAGATTCTTGGGGATTGCATACCTTGTTGTTGGTGGACTATCCTTGTTCTGTGCTATAGGATTCATTCTTCTGTATGTGATCAAGCCAAGGTAAAGGAAATATTTTGCTTTTTCTATACTACTTTATGGTTCTACATTTATTTTTTGAGTTAAGATCATGATTTTACATTATGAGATGTGAAATGCTAGCGAAACATTCTGTAACACTAGCATTTGAATACGCTCTTTTCTATTGGTTGAAATTGACAAGTTCTGATAAAATTTATGTTAGGAAATTAATATGGCTACATAGTAAAGAAAAGCTGAAACATTTTTGGTTATTTGTAAGTAGCAAATGTGAGCTAACATTACTATATTGCTCTTTTTGCAGACCTCTTGGGGATCCATCCTACTTATCATGGAACAGAAATCCAGGGATCTTAAAATGA

Protein sequence

>MS.gene069857.t1

MMDMTSSKDGQSPPNSKKTSKKPKYSRFSQQELPAWKPILTPGWVIATFTAIGIIFIPIGLASLFSSGKVVEAEFRYDETCLSPSDAKDAVAYIKSDTTNKTCTHKWIVEQKMQAPVFIYYQLDNYYQNHRRYVKSRNDKQLWRKSAEGQTDHCDPVDKTEGKEPIVPCGLIAWSMFNDTYKFSMDNKDLTVNKKNIAWGSDKNSKFGREVYPKNFQSGGLIGGAKLNESIPLSEQEDLIVWMRTAALPTFRKLYGKIESDLEVNDEIEILIQNNYNTYEFQGRKKLVLSTTTWIGGKNRFLGIAYLVVGGLSLFCAIGFILLYVIKPRPLGDPSYLSWNRNPGILK