AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33632


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33632.t1 MTR_1g029620 94.872 936 41 3 6 937 77 1009 0.0 1811
MS.gene33632.t1 MTR_1g029620 94.368 870 42 3 6 871 77 943 0.0 1667
MS.gene33632.t1 MTR_3g088575 69.868 906 233 8 51 937 1 885 0.0 1260
MS.gene33632.t1 MTR_3g088575 66.979 854 242 8 15 849 60 892 0.0 1116
MS.gene33632.t1 MTR_4g076990 45.260 327 166 6 617 936 197 517 4.53e-82 275
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33632.t1 AT1G21640 63.480 931 299 8 18 937 85 985 0.0 1175
MS.gene33632.t1 AT1G21640 62.540 945 299 9 18 937 85 999 0.0 1166
MS.gene33632.t1 AT3G21070 45.566 327 165 6 617 936 201 521 1.10e-83 279
MS.gene33632.t1 AT3G21070 45.345 333 163 7 617 936 150 476 1.52e-83 278
MS.gene33632.t1 AT3G21070 45.566 327 165 6 617 936 279 599 1.35e-82 279
MS.gene33632.t1 AT3G21070 40.000 120 69 3 617 733 279 398 7.90e-18 87.4

Find 213 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAGGAGAAATTCCATTTA+AGG 0.117499 1.1:+15229817 None:intergenic
GATAAAATAGTTTCTGTTCT+TGG 0.162840 1.1:-15230757 MS.gene33632:CDS
GAAATTCTTACCGCAATTTA+AGG 0.173847 1.1:-15229639 MS.gene33632:CDS
GCTTGATTCGCTGCCTAAAT+TGG 0.187801 1.1:-15225855 MS.gene33632:CDS
TTCTGCTCGATTAGAATTAA+AGG 0.198861 1.1:-15226251 MS.gene33632:intron
AAGGCTTCATTCTGCATTAA+TGG 0.226394 1.1:-15230857 MS.gene33632:CDS
CAAGGTAATGCAGCCTTAAA+TGG 0.229895 1.1:-15229830 MS.gene33632:CDS
GTGGGTCCTGATAGTTTAAA+TGG 0.235665 1.1:-15229563 MS.gene33632:CDS
TGACACTCACTTTGGTTATA+AGG 0.245401 1.1:+15227590 None:intergenic
GGAAAAGATCCTTCCTTATC+AGG 0.258160 1.1:+15229800 None:intergenic
GTCCTACACTATTTGCTAAT+TGG 0.269632 1.1:-15230450 MS.gene33632:CDS
TTTAACAACAGCACATTCTT+TGG 0.278780 1.1:+15229104 None:intergenic
CTTGCCAGAATTCCAGGTTT+TGG 0.283366 1.1:-15228713 MS.gene33632:CDS
GTCGTGGAGGGGACCAGTTC+CGG 0.285693 1.1:-15230929 MS.gene33632:intron
AGAATGTGATAACATGTTAA+AGG 0.290501 1.1:+15230012 None:intergenic
GCGTTACTTCTAGCATCTTC+TGG 0.291203 1.1:+15226003 None:intergenic
AAAGGTCACGGAATCTTCTT+TGG 0.291776 1.1:-15229177 MS.gene33632:CDS
AGGCATATTGTAGGATCTTT+AGG 0.296902 1.1:-15230888 MS.gene33632:CDS
AACAATATGCACGGAACGTT+TGG 0.298253 1.1:+15226325 None:intergenic
AAATCTCCAAGGGTTGAAAA+TGG 0.312801 1.1:-15229353 MS.gene33632:CDS
GAATCCAAAACCTGGAATTC+TGG 0.318930 1.1:+15228709 None:intergenic
AAGAATGTCTGCTATGATTC+TGG 0.319807 1.1:-15230499 MS.gene33632:CDS
ATTGTCATCGACCGTAATTT+CGG 0.320404 1.1:+15229508 None:intergenic
CAAGCCTCTCATTCCAATTT+AGG 0.327020 1.1:+15225842 None:intergenic
AATTCTAATCGAGCAGAATC+TGG 0.332072 1.1:+15226256 None:intergenic
CAATTTAAGGACATGGCTAT+TGG 0.337248 1.1:-15229626 MS.gene33632:CDS
GGCAGGGACGATGTTCTTAC+TGG 0.338007 1.1:-15230709 MS.gene33632:CDS
TTGTCATCGACCGTAATTTC+GGG 0.343242 1.1:+15229509 None:intergenic
GCTGATCCATTTAAACTATC+AGG 0.343657 1.1:+15229557 None:intergenic
GATGTACTTGCCAGAATTCC+AGG 0.343709 1.1:-15228719 MS.gene33632:CDS
TTCATAGCAAGGAAGGAGTT+TGG 0.361927 1.1:-15230117 MS.gene33632:CDS
CACCTTCGGGCTTGACTCTC+CGG 0.365207 1.1:-15232910 MS.gene33632:intron
ATCTGGAGAGCCCGAAATTA+CGG 0.366087 1.1:-15229519 MS.gene33632:CDS
CAATGAGGTGGTTGTTGATC+GGG 0.368521 1.1:-15227659 MS.gene33632:CDS
CCAAGGTTAAATGATACAAT+AGG 0.370413 1.1:+15228478 None:intergenic
ATTTGATAATTGACATAATC+GGG 0.377033 1.1:+15229671 None:intergenic
GGTGCAGTCATAACTTCAAC+TGG 0.379017 1.1:+15230205 None:intergenic
AAAGCTTGGGGACGAACTAT+TGG 0.380081 1.1:-15229081 MS.gene33632:CDS
TCGTGGAGGGGACCAGTTCC+GGG 0.380564 1.1:-15230928 MS.gene33632:intron
CTCGCAACCTGTTCCATTGT+TGG 0.385256 1.1:+15230184 None:intergenic
CGTAAAGGTAAAGCAATTCC+AGG 0.385617 1.1:-15227700 MS.gene33632:CDS
GACAGTGAATGTGGACAGAT+AGG 0.388238 1.1:+15226298 None:intergenic
GATTTGATAATTGACATAAT+CGG 0.389848 1.1:+15229670 None:intergenic
AAATGGAATTTCTCCTGATA+AGG 0.390422 1.1:-15229813 MS.gene33632:CDS
CAAGGTTAAATGATACAATA+GGG 0.391337 1.1:+15228479 None:intergenic
GAATGTGATAACATGTTAAA+GGG 0.391666 1.1:+15230013 None:intergenic
TCATTTAACCTTGGTTCCCT+TGG 0.392134 1.1:-15228469 MS.gene33632:CDS
CATTCAATCTTTGAAAGGTA+TGG 0.404554 1.1:+15227628 None:intergenic
GACTTAAGACAAGTCATTCA+TGG 0.406463 1.1:-15227784 MS.gene33632:CDS
ATGTCAATTATCAAATCAAA+AGG 0.408195 1.1:-15229664 MS.gene33632:CDS
GCATTATGCAATCCGTTGAC+TGG 0.408333 1.1:-15230832 MS.gene33632:CDS
GACAATCAAAAGTCTGTGAA+TGG 0.413979 1.1:-15229491 MS.gene33632:CDS
CGTCGTCAACGGGAGTTGTA+AGG 0.414483 1.1:-15229265 MS.gene33632:CDS
CCTTGTATCATGGCTATAGA+AGG 0.419763 1.1:+15228679 None:intergenic
CTAACGTGGTTACTAGATAA+AGG 0.422106 1.1:-15230334 MS.gene33632:CDS
GTTTCCAATGGTACTATTGT+GGG 0.424786 1.1:-15229581 MS.gene33632:CDS
CGCAGAGATTAGCGAGATTG+AGG 0.428348 1.1:-15230656 MS.gene33632:CDS
TTTCATCTCGCTTCTGAAAA+CGG 0.431248 1.1:+15230615 None:intergenic
CATCTGCTATGGTGTCTAGA+TGG 0.435337 1.1:-15230090 MS.gene33632:CDS
GAATGAGAGGCTTGATCAAA+AGG 0.438725 1.1:-15225833 MS.gene33632:CDS
ACTGCATATTCCACGGCTGC+TGG 0.443446 1.1:-15227379 MS.gene33632:CDS
CTAATCTCTGCGTCAAGAAA+GGG 0.444051 1.1:+15230667 None:intergenic
GATGCTCACTCATATGTATT+CGG 0.447651 1.1:+15225926 None:intergenic
AGTTTGACCAAACGGGTGAT+TGG 0.449747 1.1:-15225885 MS.gene33632:CDS
GACTGCACCAACAATGGAAC+AGG 0.453609 1.1:-15230191 MS.gene33632:CDS
TAATGCAGAATGAAGCCTTT+CGG 0.457413 1.1:+15230861 None:intergenic
GATATGTGTGCGTCGTCAAC+GGG 0.459074 1.1:-15229275 MS.gene33632:CDS
TGTTAACAAGTTTGACCAAA+CGG 0.464106 1.1:-15225893 MS.gene33632:CDS
GTTAACAAGTTTGACCAAAC+GGG 0.467271 1.1:-15225892 MS.gene33632:CDS
TCTAGTAGGACAACAGTAAA+CGG 0.468135 1.1:-15229455 MS.gene33632:CDS
GCTCATGTTGATCATCCATC+TGG 0.468145 1.1:-15229536 MS.gene33632:CDS
GTGAACGATGCTATTTCATC+TGG 0.471293 1.1:-15230250 MS.gene33632:CDS
TGCGGAACCAATCACCCGTT+TGG 0.471537 1.1:+15225878 None:intergenic
GCTAATCTCTGCGTCAAGAA+AGG 0.471633 1.1:+15230666 None:intergenic
TCAATGAGGTGGTTGTTGAT+CGG 0.473844 1.1:-15227660 MS.gene33632:CDS
ATTAGCAAATAGTGTAGGAC+AGG 0.475860 1.1:+15230453 None:intergenic
AGGATGTCAAATACTTTCCC+TGG 0.476122 1.1:+15227682 None:intergenic
GCTTTACGCGATGAAGAGTT+GGG 0.476938 1.1:-15229311 MS.gene33632:CDS
AGCTTTACGCGATGAAGAGT+TGG 0.477808 1.1:-15229312 MS.gene33632:CDS
TGTTTCCAATGGTACTATTG+TGG 0.479120 1.1:-15229582 MS.gene33632:CDS
TTTAAGCTCCGATCATCATC+AGG 0.480457 1.1:+15230547 None:intergenic
ACGCACACATATCGCCTTCA+AGG 0.482866 1.1:+15229285 None:intergenic
ATGATCGGAGCTTAAATGTA+TGG 0.483058 1.1:-15230540 MS.gene33632:CDS
TCCTTGCTATGAAGATAGAT+AGG 0.483132 1.1:+15230127 None:intergenic
CCTATTGTATCATTTAACCT+TGG 0.485490 1.1:-15228478 MS.gene33632:CDS
GCAAGTACATCATGCACATC+AGG 0.487460 1.1:+15228731 None:intergenic
ATGGTGTCTACATTACTCTT+AGG 0.489278 1.1:-15227747 MS.gene33632:CDS
CATAGCATTCAATCTTTGAA+AGG 0.491325 1.1:+15227623 None:intergenic
AAAAGCTCAAGTTCCTCCTC+CGG 0.491521 1.1:-15229750 MS.gene33632:CDS
GAAAATGGAACAGTCAAGGC+TGG 0.498620 1.1:-15229338 MS.gene33632:CDS
AGTTTCTGTTCTTGGATGCA+TGG 0.501044 1.1:-15230749 MS.gene33632:CDS
CTTACCGCAATTTAAGGACA+TGG 0.501593 1.1:-15229633 MS.gene33632:CDS
CAAGGTGATGGAGTCATTGT+TGG 0.503053 1.1:-15227418 MS.gene33632:CDS
CTGAAGTCGAGGCATATTGT+AGG 0.503127 1.1:-15230897 MS.gene33632:CDS
CTCAGCAACAGATGCTTATG+TGG 0.506563 1.1:-15229136 MS.gene33632:CDS
GATGCAACACGCAGTTCTGT+TGG 0.508978 1.1:-15229899 MS.gene33632:CDS
ACAATCAAAAGTCTGTGAAT+GGG 0.511700 1.1:-15229490 MS.gene33632:CDS
CATTATGCAATCCGTTGACT+GGG 0.511984 1.1:-15230831 MS.gene33632:CDS
GTCATTGTTGGCACTCCTAC+GGG 0.512434 1.1:-15227406 MS.gene33632:CDS
TCAGCAATATCACCCGGAAC+TGG 0.514753 1.1:+15230916 None:intergenic
CGTCCCTGCCTTTGTTCACA+AGG 0.515046 1.1:+15230722 None:intergenic
GGAATGCTTCTAGTTCTAGT+AGG 0.516272 1.1:-15229469 MS.gene33632:CDS
CACGGCTGCTGGAGGTTCCA+TGG 0.519383 1.1:-15227368 MS.gene33632:intron
GAAGAGTTGGGATCCCTTGA+AGG 0.521799 1.1:-15229299 MS.gene33632:CDS
CAGGCATTAAATAATTCTGA+AGG 0.522487 1.1:+15230566 None:intergenic
CGATATGTGTGCGTCGTCAA+CGG 0.524377 1.1:-15229276 MS.gene33632:CDS
CGTTTCAGAGACACTTCTGT+CGG 0.525556 1.1:+15229871 None:intergenic
AGTCATTGTTGGCACTCCTA+CGG 0.525764 1.1:-15227407 MS.gene33632:CDS
TATCCCTTGTGAACAAAGGC+AGG 0.526158 1.1:-15230726 MS.gene33632:CDS
GAAATTGTCTCTTACAGTCT+CGG 0.527981 1.1:+15230285 None:intergenic
GTAATTTCGGGCTCTCCAGA+TGG 0.529696 1.1:+15229521 None:intergenic
AACTCAAGTACCTTGTATCA+TGG 0.533647 1.1:+15228669 None:intergenic
AGATGAAATAGCATCGTTCA+CGG 0.537270 1.1:+15230252 None:intergenic
AGAAAGATCCTCCCTCGAAA+AGG 0.537816 1.1:-15229948 MS.gene33632:CDS
AAATAGCTCTGCAAAACTGC+AGG 0.538113 1.1:-15229987 MS.gene33632:CDS
AGGACCCACAATAGTACCAT+TGG 0.538672 1.1:+15229577 None:intergenic
ACAGTGAATGTGGACAGATA+GGG 0.540155 1.1:+15226299 None:intergenic
GTCTTTCAGGTACAAGGTGA+TGG 0.540615 1.1:-15227430 MS.gene33632:intron
TGTCATGTCTTTCAGGTACA+AGG 0.544304 1.1:-15227436 MS.gene33632:intron
TGGTCAAACTTGTTAACAGT+TGG 0.545206 1.1:+15225898 None:intergenic
TCAAGGGGAATTACATTACA+TGG 0.545720 1.1:-15229426 MS.gene33632:CDS
GTATGTAGTTTGACGACTAT+AGG 0.547777 1.1:-15227810 MS.gene33632:intron
TCGCTTCTGAAAACGGCAAG+TGG 0.547859 1.1:+15230622 None:intergenic
TTCTGAAAACGGCAAGTGGA+GGG 0.548295 1.1:+15230626 None:intergenic
GCAGAATCTGGAAGAATGAC+AGG 0.548305 1.1:+15226268 None:intergenic
ATGTTACAGATAGCAGCAAA+AGG 0.548480 1.1:-15230150 MS.gene33632:CDS
GTCTGCACGAATCCAAAACC+TGG 0.548544 1.1:+15228701 None:intergenic
CCTTCTATAGCCATGATACA+AGG 0.550051 1.1:-15228679 MS.gene33632:intron
GGAATGTAGCGTCTCGTATG+AGG 0.551593 1.1:-15230809 MS.gene33632:CDS
ATTTAATGCCTGATGATGAT+CGG 0.551924 1.1:-15230555 MS.gene33632:CDS
GCCTATCTATCTTCATAGCA+AGG 0.556380 1.1:-15230128 MS.gene33632:CDS
GGAATTTCTCCTGATAAGGA+AGG 0.557805 1.1:-15229809 MS.gene33632:CDS
AAGAAAGGGGTTCATAATTG+AGG 0.558581 1.1:+15230681 None:intergenic
AACGCGTGGGTCTCATTCGA+TGG 0.559011 1.1:-15225985 MS.gene33632:CDS
TGTCAATTATCAAATCAAAA+GGG 0.561271 1.1:-15229663 MS.gene33632:CDS
AGTTATGACTGCACCAACAA+TGG 0.561997 1.1:-15230197 MS.gene33632:CDS
ATGTAACAACTAAATCTCCA+AGG 0.564009 1.1:-15229364 MS.gene33632:CDS
CATGGAACCTCCAGCAGCCG+TGG 0.566205 1.1:+15227369 None:intergenic
TTGGAAAAGATATCCGGAGG+AGG 0.566248 1.1:+15229737 None:intergenic
TTCTTCTTCTAAAGAAGACA+CGG 0.570642 1.1:-15230413 MS.gene33632:CDS
AGAAGACAACAGCTCTCAAG+AGG 0.570976 1.1:-15225958 MS.gene33632:CDS
ATCTATCTTCATAGCAAGGA+AGG 0.571744 1.1:-15230124 MS.gene33632:CDS
AAACTTGTTAACAGTTGGAA+GGG 0.572633 1.1:+15225903 None:intergenic
CAAACTTGTTAACAGTTGGA+AGG 0.574187 1.1:+15225902 None:intergenic
AGCATCTGTTGCTGAGTGCT+AGG 0.576041 1.1:+15229143 None:intergenic
ATATGCACGGAACGTTTGGA+TGG 0.577570 1.1:+15226329 None:intergenic
AATGAGGTGGTTGTTGATCG+GGG 0.579010 1.1:-15227658 MS.gene33632:CDS
GGTGGTCAAGTAACAGAAGA+AGG 0.582613 1.1:-15230358 MS.gene33632:CDS
ACGCTACATTCCCCAGTCAA+CGG 0.582989 1.1:+15230820 None:intergenic
CATGGAAATACTTCACGAGA+TGG 0.583237 1.1:-15227766 MS.gene33632:CDS
AACTTGTTAACAGTTGGAAG+GGG 0.584585 1.1:+15225904 None:intergenic
CAGTGAATGTGGACAGATAG+GGG 0.586339 1.1:+15226300 None:intergenic
ACAGTAAACGGATCAAGTCA+AGG 0.588409 1.1:-15229443 MS.gene33632:CDS
GAAGGTGAATGAAAATGACT+TGG 0.590526 1.1:+15232926 None:intergenic
CTTCTGAAAACGGCAAGTGG+AGG 0.591574 1.1:+15230625 None:intergenic
AAGGGCAACATGTAAACTCT+CGG 0.591706 1.1:+15230585 None:intergenic
GCTGCCTAAATTGGAATGAG+AGG 0.592323 1.1:-15225846 MS.gene33632:CDS
CAGTAAACGGATCAAGTCAA+GGG 0.592433 1.1:-15229442 MS.gene33632:CDS
GGAGTCTGAAGAATTAGAAA+CGG 0.593217 1.1:-15230392 MS.gene33632:CDS
AATGTGATAACATGTTAAAG+GGG 0.595112 1.1:+15230014 None:intergenic
GTCGTCAACGGGAGTTGTAA+GGG 0.596339 1.1:-15229264 MS.gene33632:CDS
AAGGTTAAATGATACAATAG+GGG 0.599838 1.1:+15228480 None:intergenic
GCATATTCCACGGCTGCTGG+AGG 0.600712 1.1:-15227376 MS.gene33632:CDS
AAGAGACAATTTCTATCAAG+CGG 0.601979 1.1:-15230275 MS.gene33632:CDS
GGAGATGTGGTTGTTTCCAA+TGG 0.604328 1.1:-15229593 MS.gene33632:CDS
CAACAATGGAACAGGTTGCG+AGG 0.605355 1.1:-15230183 MS.gene33632:CDS
CGCACACATATCGCCTTCAA+GGG 0.605429 1.1:+15229286 None:intergenic
GGTCTAAATGACAGTGAATG+TGG 0.605581 1.1:+15226289 None:intergenic
AAAATGGAACAGTCAAGGCT+GGG 0.606655 1.1:-15229337 MS.gene33632:CDS
AGTTTGGAGATCATCTGCTA+TGG 0.609973 1.1:-15230101 MS.gene33632:CDS
GGGACGATGTTCTTACTGGA+AGG 0.612837 1.1:-15230705 MS.gene33632:CDS
ATGGCTATTGGAAGACGTGA+AGG 0.614015 1.1:-15229614 MS.gene33632:CDS
ATTCACAACGGCAGAGACAT+CGG 0.614951 1.1:+15229397 None:intergenic
AGGCATTAAATAATTCTGAA+GGG 0.616351 1.1:+15230567 None:intergenic
GTCCCTGCCTTTGTTCACAA+GGG 0.619714 1.1:+15230723 None:intergenic
ATTTGACATCCTCAATGAGG+TGG 0.621324 1.1:-15227671 MS.gene33632:CDS
GTAAAGGTAAAGCAATTCCA+GGG 0.621381 1.1:-15227699 MS.gene33632:CDS
GGTTGAAAATGGAACAGTCA+AGG 0.621469 1.1:-15229342 MS.gene33632:CDS
TAATCTCTGCGTCAAGAAAG+GGG 0.622731 1.1:+15230668 None:intergenic
GGGAAGTACTGCATATTCCA+CGG 0.629158 1.1:-15227386 MS.gene33632:CDS
GATCAACAACCACCTCATTG+AGG 0.630967 1.1:+15227662 None:intergenic
ATCCCTTGTGAACAAAGGCA+GGG 0.631490 1.1:-15230725 MS.gene33632:CDS
ATGGTATCCCTTGTGAACAA+AGG 0.632008 1.1:-15230730 MS.gene33632:CDS
ATGTGATAACATGTTAAAGG+GGG 0.633639 1.1:+15230015 None:intergenic
TGTAACAACTAAATCTCCAA+GGG 0.634129 1.1:-15229363 MS.gene33632:CDS
GGATCTTTAGGAACTCCGAA+AGG 0.635393 1.1:-15230876 MS.gene33632:CDS
TACCGGAGAGTCAAGCCCGA+AGG 0.636841 1.1:+15232908 None:intergenic
TCAGAAAACCAAGGGAACCA+AGG 0.637128 1.1:+15228461 None:intergenic
GGGTGATATTGCTGAAGTCG+AGG 0.638757 1.1:-15230908 MS.gene33632:CDS
CTGCTATGGTGTCTAGATGG+AGG 0.639306 1.1:-15230087 MS.gene33632:CDS
ATGAGAAGTCAGAAAACCAA+GGG 0.643195 1.1:+15228453 None:intergenic
ATCGGAGCTTAAATGTATGG+AGG 0.646616 1.1:-15230537 MS.gene33632:CDS
TTGTACTAGAGAAAAGGTCA+CGG 0.651293 1.1:-15229189 MS.gene33632:CDS
ATAGCCATGTCCTTAAATTG+CGG 0.663244 1.1:+15229629 None:intergenic
GTGCAGTCATAACTTCAACT+GGG 0.663724 1.1:+15230206 None:intergenic
TCGACTTCAGCAATATCACC+CGG 0.665510 1.1:+15230910 None:intergenic
AGATGCTAGAAGTAACGCGT+GGG 0.672147 1.1:-15225998 MS.gene33632:CDS
GAATATGCAGTACTTCCCGT+AGG 0.673663 1.1:+15227391 None:intergenic
TATGAGAAGTCAGAAAACCA+AGG 0.675077 1.1:+15228452 None:intergenic
AGTATTTGACATCCTCAATG+AGG 0.678965 1.1:-15227674 MS.gene33632:CDS
TGATAATTGACATAATCGGG+AGG 0.681483 1.1:+15229674 None:intergenic
AAGATGCTAGAAGTAACGCG+TGG 0.681498 1.1:-15225999 MS.gene33632:CDS
TGGAAGACGTGAAGGAGATG+TGG 0.685338 1.1:-15229606 MS.gene33632:CDS
CACCAATTAGCAAATAGTGT+AGG 0.686349 1.1:+15230448 None:intergenic
ATAGGGGTAAACAATATGCA+CGG 0.689744 1.1:+15226316 None:intergenic
AGTAAACGGATCAAGTCAAG+GGG 0.695048 1.1:-15229441 MS.gene33632:CDS
AGGTTAAATGATACAATAGG+GGG 0.698283 1.1:+15228481 None:intergenic
CAGGGATAACCCTCACCACG+AGG 0.704430 1.1:+15230472 None:intergenic
TTAGCAAATAGTGTAGGACA+GGG 0.706605 1.1:+15230454 None:intergenic
TTAGGCAGCGAATCAAGCTG+CGG 0.712248 1.1:+15225860 None:intergenic
AAGTATGATGAGAAAACACA+AGG 0.715372 1.1:-15229848 MS.gene33632:CDS
ATTATGCAATCCGTTGACTG+GGG 0.726680 1.1:-15230830 MS.gene33632:CDS
TAACAGAAGAAGGACTAACG+TGG 0.734514 1.1:-15230348 MS.gene33632:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr1.1 gene 15225825 15232978 15225825 ID=MS.gene33632
chr1.1 mRNA 15225825 15232978 15225825 ID=MS.gene33632.t1;Parent=MS.gene33632
chr1.1 exon 15232911 15232978 15232911 ID=MS.gene33632.t1.exon1;Parent=MS.gene33632.t1
chr1.1 CDS 15232911 15232978 15232911 ID=cds.MS.gene33632.t1;Parent=MS.gene33632.t1
chr1.1 exon 15229067 15230942 15229067 ID=MS.gene33632.t1.exon2;Parent=MS.gene33632.t1
chr1.1 CDS 15229067 15230942 15229067 ID=cds.MS.gene33632.t1;Parent=MS.gene33632.t1
chr1.1 exon 15228680 15228801 15228680 ID=MS.gene33632.t1.exon3;Parent=MS.gene33632.t1
chr1.1 CDS 15228680 15228801 15228680 ID=cds.MS.gene33632.t1;Parent=MS.gene33632.t1
chr1.1 exon 15228450 15228591 15228450 ID=MS.gene33632.t1.exon4;Parent=MS.gene33632.t1
chr1.1 CDS 15228450 15228591 15228450 ID=cds.MS.gene33632.t1;Parent=MS.gene33632.t1
chr1.1 exon 15227600 15227824 15227600 ID=MS.gene33632.t1.exon5;Parent=MS.gene33632.t1
chr1.1 CDS 15227600 15227824 15227600 ID=cds.MS.gene33632.t1;Parent=MS.gene33632.t1
chr1.1 exon 15227369 15227443 15227369 ID=MS.gene33632.t1.exon6;Parent=MS.gene33632.t1
chr1.1 CDS 15227369 15227443 15227369 ID=cds.MS.gene33632.t1;Parent=MS.gene33632.t1
chr1.1 exon 15226252 15226353 15226252 ID=MS.gene33632.t1.exon7;Parent=MS.gene33632.t1
chr1.1 CDS 15226252 15226353 15226252 ID=cds.MS.gene33632.t1;Parent=MS.gene33632.t1
chr1.1 exon 15225825 15226028 15225825 ID=MS.gene33632.t1.exon8;Parent=MS.gene33632.t1
chr1.1 CDS 15225825 15226028 15225825 ID=cds.MS.gene33632.t1;Parent=MS.gene33632.t1
Gene Sequence

>MS.gene33632

ATGTCAAGTTTGTTATCAGTGCACAGCTTTCCAAGTCATTTTCATTCACCTTCGGGCTTGACTCTCCGGTACACTCTCTTATACTTATCATTTATAGTAATTCCTAATATGTTATGTTATTATCGTTTTAACTTTTAACTTTCAAGTTGCAAGTTTATTTATAATGTTTAGTTTCTGTCACTTGAAATAATTAAATAGGACACTTTGCGGCGTAGTTTTTATGTTATGTAAATTATAATGTGTTTGATGTTGATCATAGATTATACTTCATTCTTGTTAAGGAATTTAATAATAAAAAGAAAATTCTTCTATGAAATGAAATTTTTAGCTGGTTTGTGTGATCATGATTTGTGATACAAGTTTGTGAAAATCACCTGTGTTATGTTAGGACAGAACTTAGGTGTTGTTTTTGCTATTCATCAATTCTAACATGTTATGTGTATTTTAAATTTTTATGTAAGTTTACATTTAAAATGATTTTGTTTATACTATTAGAACCAACACGAGAATCAAGTAAGCGTAACGGAGATGAGGACATTGCATTGGATGAGTTGTAAGACTAGACAAGATAAGATTAGGAATGACACAATTAGAGAGAAAGTTCGGGTAGCATTTAAAGTAGAAAAGATGATAGAAACCAGGCTTAGGTGGTTTGACATGTAGAGAGAAGACATGTAGATGCTATAGTACGAAGAGCAGATCAGATGGAGGAGAGTCAGACCAAAAGAGGTAGATGGCGACCTAGAAAAACTATTAGAAAAGATTTAGAGAAATATGATTCAGATAGACCATTATGGCGTAATTCGATCAATGTAGCCAACATCACTTAGTGGGATAATGGGTTGTTGTTGTACTAGATACATTATTCATGTGTTGAGTTTTGATTAGATAACAATTTAATACCCATACTCACATCTATCCTGGGACGAGTCTAATTCACACATAGCATTCCACTCTAATACCAATTTAAGCTAGCTTAAAGTATGAGAGTTTCTAAACACATTTATTCATCGAATAACTCGGGAACTGAACAATGTGGGACTCCAATCAATCTTCAAACAATTTCAGAATCCACCCTCACGCCTAGCACGGGGCATGTGTCCAATTCCCACACTACAATCCTTAACCCGACTCTAATACCATGTTAAATGGGCTAGAATCTCATCCCAAAAGATAATTCAAAGGATGAGAGAGCCCAAACACATTTATACACCAAAAAACCTGGGAACCTAGGCAATGTGAGACTTCAATACAACTTCAATAAAAGCAATGCATAATTTTGTCAAAATTGCAATGTGGTTTCTCAAGACTTGTTGTTGGGTAACTCTCATTGTAGTATGGTTTCTTCTTAATCATGTTTGCACATAGGTGAATTGTTTGTTTTTTTCTCTGCGCATTTTGGTTGCTTTTGTTATTCTTTTAGTTCCATTTTTTTGGAATGTGAACTTGACCAATCTTGATGCATGCTATTATAGATTCATTTGGTCCATTTAATTAGCTGTTTTGCATTATGATTTAGTTGCCATTGCTGGATAATTCTAAACTTGGAGTATCAATTTCAACATAAATGAATTTCTGTTGTTAATTTTTGTATGTGTTCTTCAACTTAGGCCCTACTTGCGCAAACAACTTATTTTGCAGCTTATAGCATAAGCGCTTATAGATTAGCTATTTCTATAACACATGATAAAATAAAGTCAAACTATTTTCGTATAATAGATAAGCTCTTTTCATAAGCTATTTTGGAGAGGTTATGAAAATAAGCTGAAAACAACTCATAAGCTATTTTCATGAGTTCTCCCAATTAGTGTCACAAGCGCTTATGTAAGTAGATAAGCTCAAATAACTCAATCCAGGCCCTTTAAATGAATTTCCTCATTTTTTTAATTTTTTTTTTTTGTTTATATGCATTGATGAATTAACTCTTGAACTTAATGTCATGGACTAACATTATTCTTTCTAATTTGTATTTGATGTTTCCATTTTTAGAATTTGAATTCCTTCCAATCCCATGATCTATCAAAATTGTCGTGGAGGGGACCAGTTCCGGGTGATATTGCTGAAGTCGAGGCATATTGTAGGATCTTTAGGAACTCCGAAAGGCTTCATTCTGCATTAATGGATGCATTATGCAATCCGTTGACTGGGGAATGTAGCGTCTCGTATGAGGTTTCATCAGATGAGAAACCTCAACTTGAAGATAAAATAGTTTCTGTTCTTGGATGCATGGTATCCCTTGTGAACAAAGGCAGGGACGATGTTCTTACTGGAAGGTCCTCAATTATGAACCCCTTTCTTGACGCAGAGATTAGCGAGATTGAGGATAAGCTCCCTCCACTTGCCGTTTTCAGAAGCGAGATGAAAAGGTGTTCCGAGAGTTTACATGTTGCCCTTCAGAATTATTTAATGCCTGATGATGATCGGAGCTTAAATGTATGGAGGAAACTTCAGAAACTGAAGAATGTCTGCTATGATTCTGGTTTTCCTCGTGGTGAGGGTTATCCCTGTCCTACACTATTTGCTAATTGGTGTCCTGTATATTTTTCTTCTTCTAAAGAAGACACGGAGTCTGAAGAATTAGAAACGGCTTTTTGGACTGGTGGTCAAGTAACAGAAGAAGGACTAACGTGGTTACTAGATAAAGGATATAAAACAATTATAGATATCAGAGCCGAGACTGTAAGAGACAATTTCTATCAAGCGGCCGTGAACGATGCTATTTCATCTGGCAAAATTAATTTAGTAAAAATCCCAGTTGAAGTTATGACTGCACCAACAATGGAACAGGTTGCGAGGTTTGCATCTTATGTTACAGATAGCAGCAAAAGGCCTATCTATCTTCATAGCAAGGAAGGAGTTTGGAGATCATCTGCTATGGTGTCTAGATGGAGGCAGTATATGACTCGCTCTTCGTCACAGAATGTTTCTAGTCCACCAATTACCCCCTTTAACATGTTATCACATTCTACAAATAGCTCTGCAAAACTGCAGGATTCTTCAGCGACTGCAGAAAGATCCTCCCTCGAAAAGGATATTACTTCTTTGCAAGACAATTTCGATGCAACACGCAGTTCTGTTGGAACATCCGACAGAAGTGTCTCTGAAACGAAGTATGATGAGAAAACACAAGGTAATGCAGCCTTAAATGGAATTTCTCCTGATAAGGAAGGATCTTTTCCAAGTTTTTCCAGCAAGATTAATCCTTTAAAAGCTCAAGTTCCTCCTCCGGATATCTTTTCCAAAAAAGCGATGTCCACATTTTTGGGTAGCAGGAAGATCTCACCTCCCGATTATGTCAATTATCAAATCAAAAGGGCGAAATTCTTACCGCAATTTAAGGACATGGCTATTGGAAGACGTGAAGGAGATGTGGTTGTTTCCAATGGTACTATTGTGGGTCCTGATAGTTTAAATGGATCAGCTCATGTTGATCATCCATCTGGAGAGCCCGAAATTACGGTCGATGACAATCAAAAGTCTGTGAATGGGAATGCTTCTAGTTCTAGTAGGACAACAGTAAACGGATCAAGTCAAGGGGAATTACATTACATGGCTAATGCCGATGTCTCTGCCGTTGTGAATAATAATAATAATGTAACAACTAAATCTCCAAGGGTTGAAAATGGAACAGTCAAGGCTGGGTTAGCTTTACGCGATGAAGAGTTGGGATCCCTTGAAGGCGATATGTGTGCGTCGTCAACGGGAGTTGTAAGGGTGCAGTCAAGAAAGAAAGCCGAGATGTTTTTGGTTCGGACAGATGGATTTTCTTGTACTAGAGAAAAGGTCACGGAATCTTCTTTGGCTTTCACTCATCCTAGCACTCAGCAACAGATGCTTATGTGGAAGTCTACACCAAAGAATGTGCTGTTGTTAAAAAAGCTTGGGGACGAACTATTGGAAGAAGCAAAAATGGTAATGATTTTCTTTGACTCTAATGGTTTAAAAGTTTAGAATAGACATGGCACTAGAGTTTCTGTAGTTAATGTATAGGTGCAACTTAATTGCAAAAATATTTTGCATCGAAGATGTGAATATTCATTCATTTGTTTAGTCTTTTTTATTTTATTTTATTTTATTTTTAAAATTCATATTGAAATTACGAGTATTTATTATGAGTATTTTTTTAAATAAATCAACTACATCCATTCTTAATCCAGTTTCGATATCTAATCTGCAGGTTGCTAATTTCCTTCATCACCAAGAAAAAATGAATGTTATTGTGGAACCTGATGTGCATGATGTACTTGCCAGAATTCCAGGTTTTGGATTCGTGCAGACCTTCTATAGCCATGATACAAGGTACTTGAGTTTGAAATTGTAAATTTGTGTGAACTCACTTCACTTCTAAGCACTTTTGTTTACTTATAAAGCTACTCCTTTGATTCAGTGATCTACACGAGAAAGTAGATTTTGTGGCTTGCTTGGGGGGAGACGGTGTTATACTGCATGCATCAAATCTATTCAGAGATGCTGTTCCCCCTATTGTATCATTTAACCTTGGTTCCCTTGGTTTTCTGACTTCTCATAGTGTAAGCTTTTCAAATCATAATTTATTTTAGGCTAAATTATACCAGGGCCCTTTAACTAAAATGTTTCAAACAGGTCCTTTATATTTTTTTCGTGTCAAGTTAGTCCTTTGTGTTTAAAAACGTCAATAATGTTGGACCAAACTTTATTTTTCATCTATGTTACAGAAAGTCGTACTTGATCAAGTTGATCATTCAAAAGTGTAAATTACATCTTCAATTCATCAAGATTACATCTAAATTATATCATAATGACCGCTACAATATGTAATCAGTCAAAAAGAACATTACCTTTTTTAATTTTTATCCAAGATTTTAGCTTCTTGTCGTCAACGGGGATTTAATTGTGGTGCTGAGTGGTGAGATATTTTTCACAGTCTATCATTCAATTATCATGTACACGAATTTGTAACAGAAGTGGACTAAAAATGAAAGTTGGTTCAACAGTGTGAACATTTTTAAAGATAAAAGACTAACTTGACACGAAAAAAAGATGGAAGACTTTCTTGAAACTTTAAATTAAGTTAAAAAACCCCTGATGTAGTTGTCTTTATTGTATCATAAAATAATATTGGTAGCTTCAATTCAATGTCATTTGTTTGACTTCTGTTCTGTTCCGCGTATGTAGTTTGACGACTATAGGCAAGACTTAAGACAAGTCATTCATGGAAATACTTCACGAGATGGTGTCTACATTACTCTTAGGATGCGTCTCCGATGTGAAATTTTTCGTAAAGGTAAAGCAATTCCAGGGAAAGTATTTGACATCCTCAATGAGGTGGTTGTTGATCGGGGTTCTAATCCATACCTTTCAAAGATTGAATGCTATGAACATGATCACCTTATAACCAAAGTGAGTGTCAATTTATGTTTTTTAATGCGTGCTCTAAATGTATATGCATGTTTCGTATTCTATGATGAAACAGTTAATTTTGAAATTTCATATCTCAAAACAACTTTATATGATGCAATGCTATACCTTGTTTATGACAGATGTCATGTCTTTCAGGTACAAGGTGATGGAGTCATTGTTGGCACTCCTACGGGAAGTACTGCATATTCCACGGCTGCTGGAGGTTCCATGGTAAGCTTGTAGTAGAGTTTTATTTACTACTATGAAAATATTAGATTTATTTTCCTGGTATCCATGCCTTGAAATAATTTGGTAACAGTTATGATAAATTTCAGTCATTGTTGGTGACACCACTGTCACTCACCAAGTGACTGCGGACACTATGAATAAGACTCATGGTCAATCATGAAAGCTAATTTATCTTTTCGAAACCACAAGCATCATTATAATTATTAAATTTCAGCATCATAAACACTTCGTTAGGATGTTTATGTCTTGCACCTAGTATCAAAAACAAGGGTTTCAAGTTTCTACTATGAGCATAGATAAACAATATTAACAAAAGAACATCCATGTGTTCTTTCACTTATTTTTGTCATTTTTCAAACAATTTTTTAATCTTCCAGCACATCAATTTGACGACTAAAATCATATTTCACAGTCCCAAAACAAAATCAAAGTCAATAGAGCAGAATTCAAACCACATATGCCCATAAACATCAAGAACATGTGATACGGGCAATCAAGCATTCTAGCAACATTTGAATACTCAAAGACCTCAAATTTAGCAGGATGATGTTAGAATACTTAGCTGGACTGGACTCCAAGCTCTCAACTTCCATCTAGTATGTTATTAAAGACAAACAAACTAGTGGAGACAAATCATACTGCCTTTTTGATGGGGGGAATAAAACAACAAAGCAAAAGAATAATCCTACATGCATTTGAATCCATGCGTTTTTTTTTCTTCACCTAGTTAGAAACTTAGCATAATAAAATTATACTGGTATTGATGCAAATGAACTGGTATGTTTTGAGTTATTACAAAAGACAAAGTATTGATCTCTTATACTAAATTACTAATACCATTCACTACAGAAACAAATATATGAACTGATGTTTCTTAAACAAAAATTTGTCATTTCCTTCCTTGATATTAATGAACACATGAACTGACATTACTTAATACTGCAGTTTATCATTTCATTCCTTGACGTTGTTATCTAATGACAAAAGAAAACTGCAGGTCCATCCAAACGTTCCGTGCATATTGTTTACCCCTATCTGTCCACATTCACTGTCATTTAGACCTGTCATTCTTCCAGATTCTGCTCGATTAGAATTAAAGGTAAATTAAATCATTCTCTTCGGTAAACAAATCATATTGGATATTAGTATTTCATGGCTTATGAATTAAATCCTTCTATGCCAGAATATTTCCCTTTAAGCTATGCTAAGTTTGTCTTTTGGCACCATTGCTGAATTATGATTTTGGATCTAGGCATTTATTTAAAATTAACATTTTAAGGTTTAGCTAAGGATACAAGTTATATGGTGTTTGGTATTAACAGATTCCAGAAGATGCTAGAAGTAACGCGTGGGTCTCATTCGATGGAAAAAGAAGACAACAGCTCTCAAGAGGAGACTCAGTCCGAATACATATGAGTGAGCATCCCCTTCCAACTGTTAACAAGTTTGACCAAACGGGTGATTGGTTCCGCAGCTTGATTCGCTGCCTAAATTGGAATGAGAGGCTTGATCAAAAGGCTCTATAA

Protein sequence

>MS.gene33632.t1

MSSLLSVHSFPSHFHSPSGLTLRGPVPGDIAEVEAYCRIFRNSERLHSALMDALCNPLTGECSVSYEVSSDEKPQLEDKIVSVLGCMVSLVNKGRDDVLTGRSSIMNPFLDAEISEIEDKLPPLAVFRSEMKRCSESLHVALQNYLMPDDDRSLNVWRKLQKLKNVCYDSGFPRGEGYPCPTLFANWCPVYFSSSKEDTESEELETAFWTGGQVTEEGLTWLLDKGYKTIIDIRAETVRDNFYQAAVNDAISSGKINLVKIPVEVMTAPTMEQVARFASYVTDSSKRPIYLHSKEGVWRSSAMVSRWRQYMTRSSSQNVSSPPITPFNMLSHSTNSSAKLQDSSATAERSSLEKDITSLQDNFDATRSSVGTSDRSVSETKYDEKTQGNAALNGISPDKEGSFPSFSSKINPLKAQVPPPDIFSKKAMSTFLGSRKISPPDYVNYQIKRAKFLPQFKDMAIGRREGDVVVSNGTIVGPDSLNGSAHVDHPSGEPEITVDDNQKSVNGNASSSSRTTVNGSSQGELHYMANADVSAVVNNNNNVTTKSPRVENGTVKAGLALRDEELGSLEGDMCASSTGVVRVQSRKKAEMFLVRTDGFSCTREKVTESSLAFTHPSTQQQMLMWKSTPKNVLLLKKLGDELLEEAKMVANFLHHQEKMNVIVEPDVHDVLARIPGFGFVQTFYSHDTSDLHEKVDFVACLGGDGVILHASNLFRDAVPPIVSFNLGSLGFLTSHSFDDYRQDLRQVIHGNTSRDGVYITLRMRLRCEIFRKGKAIPGKVFDILNEVVVDRGSNPYLSKIECYEHDHLITKVQGDGVIVGTPTGSTAYSTAAGGSMVHPNVPCILFTPICPHSLSFRPVILPDSARLELKIPEDARSNAWVSFDGKRRQQLSRGDSVRIHMSEHPLPTVNKFDQTGDWFRSLIRCLNWNERLDQKAL