Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46246.t1 | XP_013461313.1 | 91.1 | 316 | 28 | 0 | 1 | 316 | 5 | 320 | 7.60E-160 | 573.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46246.t1 | A0A072V1Z7 | 91.1 | 316 | 28 | 0 | 1 | 316 | 5 | 320 | 5.5e-160 | 573.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene46246 | 0.807031 | 6.16E-50 | -1.69E-46 |
| MS.gene049171 | MS.gene46246 | 0.820772 | 5.75E-53 | -1.69E-46 |
| MS.gene049173 | MS.gene46246 | 0.8049 | 1.73E-49 | -1.69E-46 |
| MS.gene049217 | MS.gene46246 | 0.868577 | 5.89E-66 | -1.69E-46 |
| MS.gene049222 | MS.gene46246 | 0.836851 | 7.34E-57 | -1.69E-46 |
| MS.gene049285 | MS.gene46246 | 0.858953 | 5.78E-63 | -1.69E-46 |
| MS.gene049320 | MS.gene46246 | 0.819673 | 1.03E-52 | -1.69E-46 |
| MS.gene049351 | MS.gene46246 | 0.83321 | 6.08E-56 | -1.69E-46 |
| MS.gene049427 | MS.gene46246 | 0.844152 | 9.02E-59 | -1.69E-46 |
| MS.gene049609 | MS.gene46246 | 0.807524 | 4.85E-50 | -1.69E-46 |
| MS.gene049614 | MS.gene46246 | 0.849886 | 2.42E-60 | -1.69E-46 |
| MS.gene049615 | MS.gene46246 | 0.821384 | 4.16E-53 | -1.69E-46 |
| MS.gene049627 | MS.gene46246 | 0.865649 | 5.07E-65 | -1.69E-46 |
| MS.gene049805 | MS.gene46246 | 0.812951 | 3.27E-51 | -1.69E-46 |
| MS.gene050163 | MS.gene46246 | 0.870826 | 1.09E-66 | -1.69E-46 |
| MS.gene050165 | MS.gene46246 | 0.859529 | 3.88E-63 | -1.69E-46 |
| MS.gene050333 | MS.gene46246 | 0.882132 | 1.35E-70 | -1.69E-46 |
| MS.gene050353 | MS.gene46246 | -0.829577 | 4.76E-55 | -1.69E-46 |
| MS.gene050444 | MS.gene46246 | 0.81468 | 1.36E-51 | -1.69E-46 |
| MS.gene050475 | MS.gene46246 | -0.827021 | 1.97E-54 | -1.69E-46 |
| MS.gene050504 | MS.gene46246 | 0.825951 | 3.54E-54 | -1.69E-46 |
| MS.gene050518 | MS.gene46246 | 0.832789 | 7.73E-56 | -1.69E-46 |
| MS.gene050538 | MS.gene46246 | 0.805514 | 1.29E-49 | -1.69E-46 |
| MS.gene050541 | MS.gene46246 | -0.824152 | 9.42E-54 | -1.69E-46 |
| MS.gene050593 | MS.gene46246 | 0.813883 | 2.04E-51 | -1.69E-46 |
| MS.gene050612 | MS.gene46246 | 0.819582 | 1.08E-52 | -1.69E-46 |
| MS.gene050675 | MS.gene46246 | 0.822997 | 1.76E-53 | -1.69E-46 |
| MS.gene050699 | MS.gene46246 | 0.803899 | 2.80E-49 | -1.69E-46 |
| MS.gene050747 | MS.gene46246 | 0.816103 | 6.57E-52 | -1.69E-46 |
| MS.gene050767 | MS.gene46246 | 0.86854 | 6.05E-66 | -1.69E-46 |
| MS.gene050770 | MS.gene46246 | 0.872332 | 3.45E-67 | -1.69E-46 |
| MS.gene050772 | MS.gene46246 | 0.841021 | 6.12E-58 | -1.69E-46 |
| MS.gene050783 | MS.gene46246 | 0.802448 | 5.58E-49 | -1.69E-46 |
| MS.gene05079 | MS.gene46246 | -0.800464 | 1.42E-48 | -1.69E-46 |
| MS.gene050812 | MS.gene46246 | 0.817767 | 2.78E-52 | -1.69E-46 |
| MS.gene050950 | MS.gene46246 | 0.812962 | 3.26E-51 | -1.69E-46 |
| MS.gene05100 | MS.gene46246 | 0.843451 | 1.39E-58 | -1.69E-46 |
| MS.gene05101 | MS.gene46246 | 0.817569 | 3.08E-52 | -1.69E-46 |
| MS.gene051228 | MS.gene46246 | 0.849781 | 2.59E-60 | -1.69E-46 |
| MS.gene051387 | MS.gene46246 | 0.82626 | 2.99E-54 | -1.69E-46 |
| MS.gene051434 | MS.gene46246 | 0.850578 | 1.55E-60 | -1.69E-46 |
| MS.gene051666 | MS.gene46246 | 0.837836 | 4.11E-57 | -1.69E-46 |
| MS.gene051694 | MS.gene46246 | 0.877092 | 8.29E-69 | -1.69E-46 |
| MS.gene051810 | MS.gene46246 | 0.821563 | 3.78E-53 | -1.69E-46 |
| MS.gene051858 | MS.gene46246 | 0.860492 | 1.99E-63 | -1.69E-46 |
| MS.gene051949 | MS.gene46246 | 0.849162 | 3.86E-60 | -1.69E-46 |
| MS.gene052078 | MS.gene46246 | 0.805482 | 1.31E-49 | -1.69E-46 |
| MS.gene052271 | MS.gene46246 | 0.854371 | 1.29E-61 | -1.69E-46 |
| MS.gene052290 | MS.gene46246 | 0.83023 | 3.30E-55 | -1.69E-46 |
| MS.gene052310 | MS.gene46246 | 0.807459 | 5.00E-50 | -1.69E-46 |
| MS.gene052322 | MS.gene46246 | 0.802237 | 6.17E-49 | -1.69E-46 |
| MS.gene052326 | MS.gene46246 | 0.83348 | 5.21E-56 | -1.69E-46 |
| MS.gene052379 | MS.gene46246 | 0.885223 | 9.79E-72 | -1.69E-46 |
| MS.gene052484 | MS.gene46246 | 0.803312 | 3.70E-49 | -1.69E-46 |
| MS.gene052670 | MS.gene46246 | 0.815037 | 1.13E-51 | -1.69E-46 |
| MS.gene052870 | MS.gene46246 | 0.840924 | 6.48E-58 | -1.69E-46 |
| MS.gene052872 | MS.gene46246 | 0.838749 | 2.39E-57 | -1.69E-46 |
| MS.gene053009 | MS.gene46246 | 0.850924 | 1.24E-60 | -1.69E-46 |
| MS.gene053103 | MS.gene46246 | 0.803691 | 3.09E-49 | -1.69E-46 |
| MS.gene053104 | MS.gene46246 | 0.832848 | 7.48E-56 | -1.69E-46 |
| MS.gene053107 | MS.gene46246 | 0.868724 | 5.28E-66 | -1.69E-46 |
| MS.gene053207 | MS.gene46246 | 0.834381 | 3.10E-56 | -1.69E-46 |
| MS.gene053213 | MS.gene46246 | 0.841713 | 4.02E-58 | -1.69E-46 |
| MS.gene053284 | MS.gene46246 | 0.816651 | 4.96E-52 | -1.69E-46 |
| MS.gene053285 | MS.gene46246 | 0.824826 | 6.54E-54 | -1.69E-46 |
| MS.gene053286 | MS.gene46246 | 0.83239 | 9.72E-56 | -1.69E-46 |
| MS.gene053322 | MS.gene46246 | 0.880247 | 6.42E-70 | -1.69E-46 |
| MS.gene053384 | MS.gene46246 | 0.831806 | 1.35E-55 | -1.69E-46 |
| MS.gene053632 | MS.gene46246 | 0.816546 | 5.23E-52 | -1.69E-46 |
| MS.gene053915 | MS.gene46246 | 0.80212 | 6.52E-49 | -1.69E-46 |
| MS.gene054376 | MS.gene46246 | 0.853072 | 3.04E-61 | -1.69E-46 |
| MS.gene054600 | MS.gene46246 | 0.825901 | 3.64E-54 | -1.69E-46 |
| MS.gene054642 | MS.gene46246 | 0.854325 | 1.33E-61 | -1.69E-46 |
| MS.gene054802 | MS.gene46246 | 0.879977 | 8.01E-70 | -1.69E-46 |
| MS.gene054803 | MS.gene46246 | 0.877111 | 8.17E-69 | -1.69E-46 |
| MS.gene054804 | MS.gene46246 | 0.880754 | 4.23E-70 | -1.69E-46 |
| MS.gene054954 | MS.gene46246 | 0.806925 | 6.49E-50 | -1.69E-46 |
| MS.gene05505 | MS.gene46246 | 0.808772 | 2.63E-50 | -1.69E-46 |
| MS.gene055206 | MS.gene46246 | 0.828918 | 6.88E-55 | -1.69E-46 |
| MS.gene055254 | MS.gene46246 | 0.824851 | 6.45E-54 | -1.69E-46 |
| MS.gene055362 | MS.gene46246 | 0.822195 | 2.70E-53 | -1.69E-46 |
| MS.gene055397 | MS.gene46246 | 0.860707 | 1.71E-63 | -1.69E-46 |
| MS.gene055412 | MS.gene46246 | 0.81317 | 2.93E-51 | -1.69E-46 |
| MS.gene055499 | MS.gene46246 | 0.861285 | 1.14E-63 | -1.69E-46 |
| MS.gene055502 | MS.gene46246 | 0.828743 | 7.59E-55 | -1.69E-46 |
| MS.gene055577 | MS.gene46246 | 0.832136 | 1.12E-55 | -1.69E-46 |
| MS.gene055605 | MS.gene46246 | 0.805095 | 1.57E-49 | -1.69E-46 |
| MS.gene055636 | MS.gene46246 | 0.873069 | 1.96E-67 | -1.69E-46 |
| MS.gene055638 | MS.gene46246 | 0.872289 | 3.57E-67 | -1.69E-46 |
| MS.gene055647 | MS.gene46246 | 0.847243 | 1.31E-59 | -1.69E-46 |
| MS.gene055722 | MS.gene46246 | 0.825435 | 4.69E-54 | -1.69E-46 |
| MS.gene055748 | MS.gene46246 | 0.800163 | 1.64E-48 | -1.69E-46 |
| MS.gene05592 | MS.gene46246 | 0.843732 | 1.17E-58 | -1.69E-46 |
| MS.gene055941 | MS.gene46246 | 0.834968 | 2.21E-56 | -1.69E-46 |
| MS.gene055956 | MS.gene46246 | -0.800629 | 1.32E-48 | -1.69E-46 |
| MS.gene056083 | MS.gene46246 | 0.841408 | 4.84E-58 | -1.69E-46 |
| MS.gene056374 | MS.gene46246 | 0.823859 | 1.10E-53 | -1.69E-46 |
| MS.gene056409 | MS.gene46246 | 0.811826 | 5.77E-51 | -1.69E-46 |
| MS.gene056410 | MS.gene46246 | 0.842301 | 2.81E-58 | -1.69E-46 |
| MS.gene056449 | MS.gene46246 | 0.819769 | 9.76E-53 | -1.69E-46 |
| MS.gene056452 | MS.gene46246 | 0.804724 | 1.88E-49 | -1.69E-46 |
| MS.gene056549 | MS.gene46246 | 0.836371 | 9.73E-57 | -1.69E-46 |
| MS.gene056611 | MS.gene46246 | 0.817694 | 2.89E-52 | -1.69E-46 |
| MS.gene056657 | MS.gene46246 | 0.83312 | 6.40E-56 | -1.69E-46 |
| MS.gene056692 | MS.gene46246 | 0.833004 | 6.84E-56 | -1.69E-46 |
| MS.gene056796 | MS.gene46246 | 0.85653 | 3.02E-62 | -1.69E-46 |
| MS.gene056897 | MS.gene46246 | 0.811584 | 6.51E-51 | -1.69E-46 |
| MS.gene056903 | MS.gene46246 | 0.831551 | 1.57E-55 | -1.69E-46 |
| MS.gene057011 | MS.gene46246 | 0.860449 | 2.05E-63 | -1.69E-46 |
| MS.gene057123 | MS.gene46246 | 0.807033 | 6.16E-50 | -1.69E-46 |
| MS.gene057129 | MS.gene46246 | 0.873044 | 1.99E-67 | -1.69E-46 |
| MS.gene057146 | MS.gene46246 | 0.837266 | 5.75E-57 | -1.69E-46 |
| MS.gene057331 | MS.gene46246 | 0.835903 | 1.28E-56 | -1.69E-46 |
| MS.gene057416 | MS.gene46246 | 0.855364 | 6.63E-62 | -1.69E-46 |
| MS.gene057658 | MS.gene46246 | 0.807569 | 4.74E-50 | -1.69E-46 |
| MS.gene057831 | MS.gene46246 | 0.825475 | 4.60E-54 | -1.69E-46 |
| MS.gene057926 | MS.gene46246 | 0.818519 | 1.88E-52 | -1.69E-46 |
| MS.gene058019 | MS.gene46246 | 0.82289 | 1.86E-53 | -1.69E-46 |
| MS.gene058082 | MS.gene46246 | 0.80121 | 1.00E-48 | -1.69E-46 |
| MS.gene058293 | MS.gene46246 | 0.83706 | 6.49E-57 | -1.69E-46 |
| MS.gene058323 | MS.gene46246 | 0.848801 | 4.86E-60 | -1.69E-46 |
| MS.gene058419 | MS.gene46246 | 0.831524 | 1.59E-55 | -1.69E-46 |
| MS.gene058544 | MS.gene46246 | 0.810652 | 1.04E-50 | -1.69E-46 |
| MS.gene058660 | MS.gene46246 | 0.835477 | 1.64E-56 | -1.69E-46 |
| MS.gene058723 | MS.gene46246 | 0.815348 | 9.68E-52 | -1.69E-46 |
| MS.gene058773 | MS.gene46246 | 0.869891 | 2.20E-66 | -1.69E-46 |
| MS.gene05883 | MS.gene46246 | 0.815035 | 1.14E-51 | -1.69E-46 |
| MS.gene058903 | MS.gene46246 | 0.810572 | 1.08E-50 | -1.69E-46 |
| MS.gene058993 | MS.gene46246 | 0.824049 | 9.96E-54 | -1.69E-46 |
| MS.gene059022 | MS.gene46246 | 0.819675 | 1.03E-52 | -1.69E-46 |
| MS.gene059023 | MS.gene46246 | 0.831102 | 2.02E-55 | -1.69E-46 |
| MS.gene059029 | MS.gene46246 | 0.879957 | 8.15E-70 | -1.69E-46 |
| MS.gene059079 | MS.gene46246 | 0.815341 | 9.72E-52 | -1.69E-46 |
| MS.gene059102 | MS.gene46246 | -0.807443 | 5.04E-50 | -1.69E-46 |
| MS.gene059181 | MS.gene46246 | 0.801061 | 1.08E-48 | -1.69E-46 |
| MS.gene059326 | MS.gene46246 | 0.815148 | 1.07E-51 | -1.69E-46 |
| MS.gene05934 | MS.gene46246 | 0.848752 | 5.02E-60 | -1.69E-46 |
| MS.gene059536 | MS.gene46246 | 0.861173 | 1.24E-63 | -1.69E-46 |
| MS.gene05959 | MS.gene46246 | 0.81737 | 3.42E-52 | -1.69E-46 |
| MS.gene059676 | MS.gene46246 | 0.840688 | 7.48E-58 | -1.69E-46 |
| MS.gene059677 | MS.gene46246 | 0.85016 | 2.03E-60 | -1.69E-46 |
| MS.gene059718 | MS.gene46246 | 0.846343 | 2.31E-59 | -1.69E-46 |
| MS.gene059756 | MS.gene46246 | 0.817074 | 3.98E-52 | -1.69E-46 |
| MS.gene059801 | MS.gene46246 | 0.809029 | 2.32E-50 | -1.69E-46 |
| MS.gene059858 | MS.gene46246 | 0.823928 | 1.06E-53 | -1.69E-46 |
| MS.gene059902 | MS.gene46246 | 0.862645 | 4.38E-64 | -1.69E-46 |
| MS.gene059960 | MS.gene46246 | 0.914215 | 2.49E-84 | -1.69E-46 |
| MS.gene060193 | MS.gene46246 | 0.845606 | 3.66E-59 | -1.69E-46 |
| MS.gene060762 | MS.gene46246 | 0.831409 | 1.70E-55 | -1.69E-46 |
| MS.gene060804 | MS.gene46246 | 0.817276 | 3.59E-52 | -1.69E-46 |
| MS.gene060818 | MS.gene46246 | 0.831777 | 1.38E-55 | -1.69E-46 |
| MS.gene06090 | MS.gene46246 | 0.831986 | 1.22E-55 | -1.69E-46 |
| MS.gene06092 | MS.gene46246 | 0.848134 | 7.44E-60 | -1.69E-46 |
| MS.gene061134 | MS.gene46246 | 0.80598 | 1.03E-49 | -1.69E-46 |
| MS.gene061150 | MS.gene46246 | 0.884592 | 1.68E-71 | -1.69E-46 |
| MS.gene061171 | MS.gene46246 | 0.816292 | 5.96E-52 | -1.69E-46 |
| MS.gene061200 | MS.gene46246 | 0.906712 | 1.11E-80 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46246.t1 | MTR_3g088605 | 97.468 | 316 | 8 | 0 | 1 | 316 | 5 | 320 | 0.0 | 634 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46246.t1 | AT1G21600 | 70.288 | 313 | 81 | 3 | 15 | 316 | 17 | 328 | 1.91e-149 | 423 |
| MS.gene46246.t1 | AT1G21600 | 70.288 | 313 | 81 | 3 | 15 | 316 | 17 | 328 | 1.91e-149 | 423 |
Find 93 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATGAGGGTTGTGGAGTTC+TGG | 0.217148 | 3.1:-71562298 | None:intergenic |
| AGATGCGCGCAAAGTGATTT+TGG | 0.230241 | 3.1:+71563827 | MS.gene46246:CDS |
| CTCCATTTCTTCTCTGGATT+GGG | 0.235829 | 3.1:-71565989 | None:intergenic |
| CTATAATCAACGAGAGTATC+AGG | 0.277330 | 3.1:-71562567 | None:intergenic |
| TCTCCATTTCTTCTCTGGAT+TGG | 0.291430 | 3.1:-71565990 | None:intergenic |
| GAGGAAGGAGGAGGTGGAAA+TGG | 0.296371 | 3.1:-71562244 | None:intergenic |
| ATGTCTCTCCATTTCTTCTC+TGG | 0.315505 | 3.1:-71565995 | None:intergenic |
| CGTCTTTCTATGACAGTTGT+TGG | 0.328642 | 3.1:-71565958 | None:intergenic |
| TGGATTGTGATTTCTTTATT+CGG | 0.339829 | 3.1:+71562625 | MS.gene46246:CDS |
| GTTTCATAAGATTAGTTTGT+TGG | 0.352718 | 3.1:+71562605 | MS.gene46246:CDS |
| TCTGGTAATAGACTTAGTTT+TGG | 0.373057 | 3.1:-71564572 | None:intergenic |
| GGGTGAAAGGAAGAGGAAGG+AGG | 0.373245 | 3.1:-71562256 | None:intergenic |
| AATGAGGGTTGTGGAGTTCT+GGG | 0.384017 | 3.1:-71562297 | None:intergenic |
| TTTGAAAGAAGAGGAGAATG+AGG | 0.389796 | 3.1:-71562313 | None:intergenic |
| CTATCTCTAGTTCTCCCTCC+TGG | 0.390997 | 3.1:-71565789 | None:intergenic |
| GCCGAGAGGTAGGGGAAGTT+TGG | 0.394433 | 3.1:-71562353 | None:intergenic |
| TTTCGTTTCTACGCAGGGTT+GGG | 0.398098 | 3.1:+71562542 | MS.gene46246:CDS |
| TGGGAAGAGGTGGTAGTGAC+GGG | 0.400696 | 3.1:-71562278 | None:intergenic |
| GGCCCAATCCAGAGAAGAAA+TGG | 0.411349 | 3.1:+71565987 | MS.gene46246:CDS |
| TGAAAGGAAGAGGAAGGAGG+AGG | 0.411743 | 3.1:-71562253 | None:intergenic |
| TCGTCGGCGCGGGTTAAGAA+TGG | 0.415299 | 3.1:-71562381 | None:intergenic |
| CTTGCTTGTGATAGCTGATA+AGG | 0.417435 | 3.1:+71565821 | MS.gene46246:CDS |
| GGGAGACCCTGAGTTTGTCC+TGG | 0.423102 | 3.1:+71564522 | MS.gene46246:CDS |
| TGAAATGGACGACGATGAAA+TGG | 0.431567 | 3.1:+71562437 | MS.gene46246:CDS |
| AGGTTTGAGTTTGAAAGAAG+AGG | 0.432547 | 3.1:-71562322 | None:intergenic |
| GGCATTGGTGCAAGAACCTT+GGG | 0.433890 | 3.1:-71562815 | None:intergenic |
| AAGGAAGAGGAAGGAGGAGG+TGG | 0.434236 | 3.1:-71562250 | None:intergenic |
| GGTTGTGGAGTTCTGGGAAG+AGG | 0.434585 | 3.1:-71562291 | None:intergenic |
| TATTACCAGAGCCAAAGTTC+TGG | 0.440100 | 3.1:+71564585 | MS.gene46246:CDS |
| TTGCTTGTGATAGCTGATAA+GGG | 0.442786 | 3.1:+71565822 | MS.gene46246:CDS |
| GAAGAGGAGAATGAGGGTTG+TGG | 0.443659 | 3.1:-71562306 | None:intergenic |
| CTCATTCAAAATAATACATA+TGG | 0.449076 | 3.1:+71565848 | MS.gene46246:CDS |
| ACAATTCCTTACCAGAACTT+TGG | 0.453887 | 3.1:-71564596 | None:intergenic |
| CCTTACCAGAACTTTGGCTC+TGG | 0.461139 | 3.1:-71564590 | None:intergenic |
| TCAAAATCCAGGACAAACTC+AGG | 0.469203 | 3.1:-71564529 | None:intergenic |
| AAATCATAAACATCATTGTC+AGG | 0.472395 | 3.1:-71562660 | None:intergenic |
| TAAACATCATTGTCAGGATC+AGG | 0.476345 | 3.1:-71562654 | None:intergenic |
| ATTGAATAAACATCTGTATC+CGG | 0.476386 | 3.1:-71562791 | None:intergenic |
| CGGTCCCGACGACTATGAAA+TGG | 0.482755 | 3.1:+71562422 | MS.gene46246:CDS |
| GGATCTCGACGTGCATCAAC+GGG | 0.484442 | 3.1:-71563872 | None:intergenic |
| CGTCGGCGCGGGTTAAGAAT+GGG | 0.484703 | 3.1:-71562380 | None:intergenic |
| AGACTTCGACATCGAGTATG+AGG | 0.488454 | 3.1:+71562479 | MS.gene46246:CDS |
| GGGGAAGTTTGGAGGATGAG+AGG | 0.489787 | 3.1:-71562342 | None:intergenic |
| AGGCATTGGTGCAAGAACCT+TGG | 0.491138 | 3.1:-71562816 | None:intergenic |
| TCTTGCACCAATGCCTCAAA+AGG | 0.494792 | 3.1:+71562823 | MS.gene46246:CDS |
| AGGATCTCGACGTGCATCAA+CGG | 0.505731 | 3.1:-71563873 | None:intergenic |
| TGGGTTGCGCCGAGAGGTAG+GGG | 0.509398 | 3.1:-71562361 | None:intergenic |
| TGTGGAGTTCTGGGAAGAGG+TGG | 0.510622 | 3.1:-71562288 | None:intergenic |
| CTTCTGTAGGTAACAGCTCC+AGG | 0.511084 | 3.1:+71565771 | MS.gene46246:intron |
| GACGTCACCGTCGTCGGCGC+GGG | 0.511575 | 3.1:-71562391 | None:intergenic |
| CATTTCATAGTCGTCGGGAC+CGG | 0.511606 | 3.1:-71562421 | None:intergenic |
| TTGAAAGAAGAGGAGAATGA+GGG | 0.515669 | 3.1:-71562312 | None:intergenic |
| CATAAATCTCCTCAAAATCC+AGG | 0.518668 | 3.1:-71564540 | None:intergenic |
| GTAGATGTATGTTACTCCTC+CGG | 0.518879 | 3.1:+71562772 | MS.gene46246:intron |
| CTGGGAAGAGGTGGTAGTGA+CGG | 0.523154 | 3.1:-71562279 | None:intergenic |
| GTCGTCCATTTCATAGTCGT+CGG | 0.525950 | 3.1:-71562427 | None:intergenic |
| CGCAATGTCAACATCGCCGT+TGG | 0.527052 | 3.1:-71562502 | None:intergenic |
| ATGGGTTGCGCCGAGAGGTA+GGG | 0.533205 | 3.1:-71562362 | None:intergenic |
| AATGGGTTGCGCCGAGAGGT+AGG | 0.541072 | 3.1:-71562363 | None:intergenic |
| TCGTCCATTTCATAGTCGTC+GGG | 0.542383 | 3.1:-71562426 | None:intergenic |
| TTCATAGTCGTCGGGACCGG+CGG | 0.543173 | 3.1:-71562418 | None:intergenic |
| GTTTCGTTTCTACGCAGGGT+TGG | 0.543888 | 3.1:+71562541 | MS.gene46246:CDS |
| TCCAAACTTCCCCTACCTCT+CGG | 0.546206 | 3.1:+71562352 | MS.gene46246:CDS |
| GAGAGGTAGGGGAAGTTTGG+AGG | 0.554936 | 3.1:-71562350 | None:intergenic |
| TTCTTAACCCGCGCCGACGA+CGG | 0.561738 | 3.1:+71562384 | MS.gene46246:CDS |
| ATCTGAGAGGGAAGTCGAGA+AGG | 0.571478 | 3.1:+71563904 | MS.gene46246:CDS |
| ATGAGTTTCGTTTCTACGCA+GGG | 0.572089 | 3.1:+71562537 | MS.gene46246:CDS |
| GGGAAGAGGTGGTAGTGACG+GGG | 0.577768 | 3.1:-71562277 | None:intergenic |
| GACGGTGACGTCGAATCCGC+CGG | 0.585608 | 3.1:+71562402 | MS.gene46246:CDS |
| CGACGTCACCGTCGTCGGCG+CGG | 0.586133 | 3.1:-71562392 | None:intergenic |
| GGATTCGACGTCACCGTCGT+CGG | 0.589846 | 3.1:-71562397 | None:intergenic |
| AGATGTTTATTCAATTCCCA+AGG | 0.590924 | 3.1:+71562799 | MS.gene46246:CDS |
| TATGAGTTTCGTTTCTACGC+AGG | 0.599665 | 3.1:+71562536 | MS.gene46246:CDS |
| TCCTCTGTATAAATCTGAGA+GGG | 0.607300 | 3.1:+71563892 | MS.gene46246:CDS |
| TGTCATAGAAAGACGAGAGT+GGG | 0.608832 | 3.1:+71565966 | MS.gene46246:CDS |
| TGCTTGTGATAGCTGATAAG+GGG | 0.619004 | 3.1:+71565823 | MS.gene46246:CDS |
| ACATCATTGTCAGGATCAGG+AGG | 0.620607 | 3.1:-71562651 | None:intergenic |
| CAAAATCCAGGACAAACTCA+GGG | 0.621593 | 3.1:-71564528 | None:intergenic |
| CTGTCATAGAAAGACGAGAG+TGG | 0.622818 | 3.1:+71565965 | MS.gene46246:CDS |
| TCCCTCTCAGATTTATACAG+AGG | 0.623624 | 3.1:-71563893 | None:intergenic |
| CGGCGATGTTGACATTGCGA+CGG | 0.633930 | 3.1:+71562506 | MS.gene46246:CDS |
| TATAATCAACGAGAGTATCA+GGG | 0.637151 | 3.1:-71562566 | None:intergenic |
| GGAAGAGGTGGTAGTGACGG+GGG | 0.641160 | 3.1:-71562276 | None:intergenic |
| TGTAGGTAACAGCTCCAGGA+GGG | 0.645497 | 3.1:+71565775 | MS.gene46246:intron |
| GGAGGAGGTGGAAATGGACA+TGG | 0.651735 | 3.1:-71562238 | None:intergenic |
| TAAGAATGGGTTGCGCCGAG+AGG | 0.657910 | 3.1:-71562367 | None:intergenic |
| GAATAAACATCTGTATCCGG+AGG | 0.662419 | 3.1:-71562788 | None:intergenic |
| CTGTAGGTAACAGCTCCAGG+AGG | 0.679723 | 3.1:+71565774 | MS.gene46246:intron |
| GACATCGAGTATGAGGCCAA+CGG | 0.680178 | 3.1:+71562486 | MS.gene46246:CDS |
| ATCCTCTGTATAAATCTGAG+AGG | 0.681896 | 3.1:+71563891 | MS.gene46246:CDS |
| AATGGACGACGATGAAATGG+AGG | 0.684321 | 3.1:+71562440 | MS.gene46246:CDS |
| TCTCGACGTGCATCAACGGG+TGG | 0.688031 | 3.1:-71563869 | None:intergenic |
| TGATGTTTATGATTTCAGAG+AGG | 0.714308 | 3.1:+71562668 | MS.gene46246:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGTTTAAAAATATATCA+TGG | - | chr3.1:71565435-71565454 | None:intergenic | 10.0% |
| !!! | CACAAATTTATAATTTTTAA+TGG | - | chr3.1:71563304-71563323 | None:intergenic | 10.0% |
| !!! | CTTTATTATATTTTTGTTAA+TGG | + | chr3.1:71563470-71563489 | MS.gene46246:intron | 10.0% |
| !! | CAATATACGTATTATAAATA+TGG | - | chr3.1:71563704-71563723 | None:intergenic | 15.0% |
| !! | TATATCAGTTTCAAATTTAA+TGG | + | chr3.1:71563770-71563789 | MS.gene46246:intron | 15.0% |
| !!! | ATTTTCTATTAAGATAACAA+GGG | + | chr3.1:71563177-71563196 | MS.gene46246:intron | 15.0% |
| !!! | TAACATATTATGGATTAAAA+AGG | - | chr3.1:71562879-71562898 | None:intergenic | 15.0% |
| !!! | TATTTTCTATTAAGATAACA+AGG | + | chr3.1:71563176-71563195 | MS.gene46246:intron | 15.0% |
| !! | AAATTGAGTGTTTAATTCAA+AGG | - | chr3.1:71562704-71562723 | None:intergenic | 20.0% |
| !! | AATTGAGTGTTTAATTCAAA+GGG | - | chr3.1:71562703-71562722 | None:intergenic | 20.0% |
| !! | ACAACATCTACAAATATTTA+TGG | + | chr3.1:71565574-71565593 | MS.gene46246:intron | 20.0% |
| !! | ATAAAATGCATAGTTATCAA+AGG | + | chr3.1:71564034-71564053 | MS.gene46246:intron | 20.0% |
| !! | ATACGTATTATAAATATGGA+TGG | - | chr3.1:71563700-71563719 | None:intergenic | 20.0% |
| !! | CTCATTCAAAATAATACATA+TGG | + | chr3.1:71565848-71565867 | MS.gene46246:CDS | 20.0% |
| !! | TATTGAAAAACAGATAATAG+AGG | + | chr3.1:71563208-71563227 | MS.gene46246:intron | 20.0% |
| !! | TGTATAAACATTAAAACAGA+AGG | - | chr3.1:71564730-71564749 | None:intergenic | 20.0% |
| !!! | ATAATATGTTACTTTGATTG+GGG | + | chr3.1:71562888-71562907 | MS.gene46246:intron | 20.0% |
| !!! | CATAATATGTTACTTTGATT+GGG | + | chr3.1:71562887-71562906 | MS.gene46246:intron | 20.0% |
| !!! | TAACTATGCATTTTATATCA+CGG | - | chr3.1:71564030-71564049 | None:intergenic | 20.0% |
| !!! | TTATTTGAATTTACCTTTTG+AGG | - | chr3.1:71562839-71562858 | None:intergenic | 20.0% |
| !!! | TTCTTTAAAACATTATCAGT+AGG | - | chr3.1:71564863-71564882 | None:intergenic | 20.0% |
| !!! | TTTTTCATAGAAAAAGTTAC+CGG | + | chr3.1:71564299-71564318 | MS.gene46246:intron | 20.0% |
| ! | AAAACATTATCAGTAGGTAA+TGG | - | chr3.1:71564857-71564876 | None:intergenic | 25.0% |
| ! | AAATCATAAACATCATTGTC+AGG | - | chr3.1:71562663-71562682 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAACAACTTA+TGG | - | chr3.1:71563422-71563441 | None:intergenic | 25.0% |
| ! | AATACAACAGTTGAATGAAA+AGG | + | chr3.1:71565102-71565121 | MS.gene46246:intron | 25.0% |
| ! | AATTCACAAATCACAAGATA+GGG | - | chr3.1:71565307-71565326 | None:intergenic | 25.0% |
| ! | ACAATAAAACCAACTATTGT+TGG | + | chr3.1:71564446-71564465 | MS.gene46246:intron | 25.0% |
| ! | ACTGATAAGTTATCTAATTG+TGG | + | chr3.1:71563022-71563041 | MS.gene46246:intron | 25.0% |
| ! | AGATTAATAACAAGTGATTC+AGG | - | chr3.1:71565887-71565906 | None:intergenic | 25.0% |
| ! | ATTGAATAAACATCTGTATC+CGG | - | chr3.1:71562794-71562813 | None:intergenic | 25.0% |
| ! | CCAATCAAAGTAACATATTA+TGG | - | chr3.1:71562889-71562908 | None:intergenic | 25.0% |
| ! | TAGGATTTAGAAATACTCTA+AGG | + | chr3.1:71564236-71564255 | MS.gene46246:intron | 25.0% |
| ! | TCTACTAATATAAGCACTTA+TGG | + | chr3.1:71562940-71562959 | MS.gene46246:intron | 25.0% |
| ! | TGACAAAACACTACAAAAAT+CGG | + | chr3.1:71564494-71564513 | MS.gene46246:CDS | 25.0% |
| ! | TGGATTGTGATTTCTTTATT+CGG | + | chr3.1:71562625-71562644 | MS.gene46246:CDS | 25.0% |
| ! | TTGATTATATTTGTAGTGCT+TGG | + | chr3.1:71563083-71563102 | MS.gene46246:intron | 25.0% |
| !! | AAATTTGAGTTAACTCACTT+AGG | + | chr3.1:71564956-71564975 | MS.gene46246:intron | 25.0% |
| !! | AATTTGAGTTAACTCACTTA+GGG | + | chr3.1:71564957-71564976 | MS.gene46246:intron | 25.0% |
| !! | CTACATGTCTAAAATAACAA+CGG | + | chr3.1:71565056-71565075 | MS.gene46246:intron | 25.0% |
| !! | TCATTCAACTGTTGTATTTT+GGG | - | chr3.1:71565100-71565119 | None:intergenic | 25.0% |
| !! | TTCATTCAACTGTTGTATTT+TGG | - | chr3.1:71565101-71565120 | None:intergenic | 25.0% |
| !! | TTTTCACTCTGCATATAAAA+TGG | - | chr3.1:71565931-71565950 | None:intergenic | 25.0% |
| !! | TTTTCATAGAAAAAGTTACC+GGG | + | chr3.1:71564300-71564319 | MS.gene46246:intron | 25.0% |
| !! | TTTTGATAAGCTAATTCATG+TGG | - | chr3.1:71563269-71563288 | None:intergenic | 25.0% |
| !!! | CCATAATATGTTACTTTGAT+TGG | + | chr3.1:71562886-71562905 | MS.gene46246:intron | 25.0% |
| !!! | GTTGTTATTTTAGACATGTA+GGG | - | chr3.1:71565057-71565076 | None:intergenic | 25.0% |
| !!! | GTTTCATAAGATTAGTTTGT+TGG | + | chr3.1:71562605-71562624 | MS.gene46246:CDS | 25.0% |
| !!! | TAATATGTTACTTTGATTGG+GGG | + | chr3.1:71562889-71562908 | MS.gene46246:intron | 25.0% |
| !!! | TTGTTATTTTAGACATGTAG+GGG | - | chr3.1:71565056-71565075 | None:intergenic | 25.0% |
| AAGAAATAAAACACTCTGCA+TGG | + | chr3.1:71564878-71564897 | MS.gene46246:intron | 30.0% | |
| AATTCGACCTTAAAATGCAA+AGG | - | chr3.1:71563939-71563958 | None:intergenic | 30.0% | |
| AATTGTGGATGAACTTATAG+TGG | + | chr3.1:71563037-71563056 | MS.gene46246:intron | 30.0% | |
| AGAAGCAAAGTGAAAACAAT+GGG | - | chr3.1:71564405-71564424 | None:intergenic | 30.0% | |
| AGATGTTTATTCAATTCCCA+AGG | + | chr3.1:71562799-71562818 | MS.gene46246:CDS | 30.0% | |
| ATATATTAGTACTGTAGCTC+AGG | + | chr3.1:71563662-71563681 | MS.gene46246:intron | 30.0% | |
| ATGACTAAAAAAGACCCATT+TGG | - | chr3.1:71563342-71563361 | None:intergenic | 30.0% | |
| ATTTCGAATCATGATGGTTT+GGG | + | chr3.1:71565336-71565355 | MS.gene46246:intron | 30.0% | |
| CATATAAAATGGCATATCAG+AGG | - | chr3.1:71565920-71565939 | None:intergenic | 30.0% | |
| GAATTCACAAATCACAAGAT+AGG | - | chr3.1:71565308-71565327 | None:intergenic | 30.0% | |
| GGTATCTTATCATGTATGTT+GGG | + | chr3.1:71563588-71563607 | MS.gene46246:intron | 30.0% | |
| GTAACAACAACAACAACAAA+TGG | - | chr3.1:71562727-71562746 | None:intergenic | 30.0% | |
| GTATCTTATCATGTATGTTG+GGG | + | chr3.1:71563589-71563608 | MS.gene46246:intron | 30.0% | |
| GTTACTGAACTATCTTCTTA+TGG | + | chr3.1:71564144-71564163 | MS.gene46246:intron | 30.0% | |
| GTTTAATATTGAGAGCTATG+TGG | - | chr3.1:71565244-71565263 | None:intergenic | 30.0% | |
| TAAAACAGAAGGCAAATTCA+AGG | - | chr3.1:71564719-71564738 | None:intergenic | 30.0% | |
| TAGAATGTTAGTTGAAATCC+TGG | + | chr3.1:71564825-71564844 | MS.gene46246:intron | 30.0% | |
| TATACGATTAAGACCATGTT+TGG | - | chr3.1:71563563-71563582 | None:intergenic | 30.0% | |
| TATCTTATCATGTATGTTGG+GGG | + | chr3.1:71563590-71563609 | MS.gene46246:intron | 30.0% | |
| TATTTCGAATCATGATGGTT+TGG | + | chr3.1:71565335-71565354 | MS.gene46246:intron | 30.0% | |
| TCATTTACCTCATTGATAGA+TGG | - | chr3.1:71565203-71565222 | None:intergenic | 30.0% | |
| TGATGTTTATGATTTCAGAG+AGG | + | chr3.1:71562668-71562687 | MS.gene46246:CDS | 30.0% | |
| TGGTATCTTATCATGTATGT+TGG | + | chr3.1:71563587-71563606 | MS.gene46246:intron | 30.0% | |
| TTGTTAGTTAATTCTCAGTC+TGG | + | chr3.1:71564640-71564659 | MS.gene46246:intron | 30.0% | |
| ! | AAAGAGTTAAAGTCTTGTAC+TGG | - | chr3.1:71565652-71565671 | None:intergenic | 30.0% |
| ! | ATACGTATATTGATTGTGTG+TGG | + | chr3.1:71563712-71563731 | MS.gene46246:intron | 30.0% |
| ! | GATAAGGAATGTGATGTTTT+AGG | + | chr3.1:71564217-71564236 | MS.gene46246:intron | 30.0% |
| ! | GGAAGAGTTTGTTTAAACTA+GGG | + | chr3.1:71564978-71564997 | MS.gene46246:intron | 30.0% |
| ! | TACGTATATTGATTGTGTGT+GGG | + | chr3.1:71563713-71563732 | MS.gene46246:intron | 30.0% |
| ! | TCTGGTAATAGACTTAGTTT+TGG | - | chr3.1:71564575-71564594 | None:intergenic | 30.0% |
| ! | TTAAGTTGTTCATCCAAACA+TGG | + | chr3.1:71563547-71563566 | MS.gene46246:intron | 30.0% |
| !! | GAGATTTTAGCACTTCAAAT+TGG | + | chr3.1:71566031-71566050 | MS.gene46246:CDS | 30.0% |
| !! | GTTTTACTTTTCACACTTCT+AGG | + | chr3.1:71564195-71564214 | MS.gene46246:intron | 30.0% |
| !! | TATAATCAACGAGAGTATCA+GGG | - | chr3.1:71562569-71562588 | None:intergenic | 30.0% |
| !!! | CGTTGTTATTTTAGACATGT+AGG | - | chr3.1:71565058-71565077 | None:intergenic | 30.0% |
| !!! | GGAGTTGATATTGTTCTTTT+AGG | + | chr3.1:71565689-71565708 | MS.gene46246:intron | 30.0% |
| !!! | TGTTATTTTAGACATGTAGG+GGG | - | chr3.1:71565055-71565074 | None:intergenic | 30.0% |
| AAGAATACCTGTAATGTGAC+AGG | - | chr3.1:71564475-71564494 | None:intergenic | 35.0% | |
| ACAAAGTTGTAGAGAAACAC+AGG | - | chr3.1:71563962-71563981 | None:intergenic | 35.0% | |
| ACAATTCCTTACCAGAACTT+TGG | - | chr3.1:71564599-71564618 | None:intergenic | 35.0% | |
| AGAAAGTGACGATTACCAAA+TGG | + | chr3.1:71563324-71563343 | MS.gene46246:intron | 35.0% | |
| AGTGCTAGACAATGAATTCA+TGG | + | chr3.1:71564761-71564780 | MS.gene46246:intron | 35.0% | |
| ATCCTCTGTATAAATCTGAG+AGG | + | chr3.1:71563891-71563910 | MS.gene46246:CDS | 35.0% | |
| CAAAACACTACAAAAATCGG+AGG | + | chr3.1:71564497-71564516 | MS.gene46246:CDS | 35.0% | |
| CAGAAGCAAAGTGAAAACAA+TGG | - | chr3.1:71564406-71564425 | None:intergenic | 35.0% | |
| CAGTTTATTACAGCTCTGTT+TGG | + | chr3.1:71562982-71563001 | MS.gene46246:intron | 35.0% | |
| CATAAATCTCCTCAAAATCC+AGG | - | chr3.1:71564543-71564562 | None:intergenic | 35.0% | |
| CCAAAAAGACTCTTACTTTC+TGG | - | chr3.1:71564339-71564358 | None:intergenic | 35.0% | |
| CCATCATGATTCGAAATAGA+TGG | - | chr3.1:71565333-71565352 | None:intergenic | 35.0% | |
| CCATCTATTTCGAATCATGA+TGG | + | chr3.1:71565330-71565349 | MS.gene46246:intron | 35.0% | |
| CTACAACTTTGTCGTAAAAC+TGG | + | chr3.1:71563970-71563989 | MS.gene46246:intron | 35.0% | |
| GAAAGTGACGATTACCAAAT+GGG | + | chr3.1:71563325-71563344 | MS.gene46246:intron | 35.0% | |
| GAAGCAAAGTGAAAACAATG+GGG | - | chr3.1:71564404-71564423 | None:intergenic | 35.0% | |
| TAAACATCATTGTCAGGATC+AGG | - | chr3.1:71562657-71562676 | None:intergenic | 35.0% | |
| TACCTCATTGATAGATGGAT+GGG | - | chr3.1:71565198-71565217 | None:intergenic | 35.0% | |
| TCATGGAATATTTGCAGACT+CGG | - | chr3.1:71565485-71565504 | None:intergenic | 35.0% | |
| TCCTCTGTATAAATCTGAGA+GGG | + | chr3.1:71563892-71563911 | MS.gene46246:CDS | 35.0% | |
| TCTTCTTATGGAATCTTACC+AGG | + | chr3.1:71564156-71564175 | MS.gene46246:intron | 35.0% | |
| TTACCTCATTGATAGATGGA+TGG | - | chr3.1:71565199-71565218 | None:intergenic | 35.0% | |
| TTATTACAGCTCTGTTTGGT+AGG | + | chr3.1:71562986-71563005 | MS.gene46246:intron | 35.0% | |
| TTGAAAGAAGAGGAGAATGA+GGG | - | chr3.1:71562315-71562334 | None:intergenic | 35.0% | |
| TTGCTTGTGATAGCTGATAA+GGG | + | chr3.1:71565822-71565841 | MS.gene46246:CDS | 35.0% | |
| TTTGAAAGAAGAGGAGAATG+AGG | - | chr3.1:71562316-71562335 | None:intergenic | 35.0% | |
| ! | AAGTTCTGGTAAGGAATTGT+TGG | + | chr3.1:71564599-71564618 | MS.gene46246:intron | 35.0% |
| ! | AGGTTTGAGTTTGAAAGAAG+AGG | - | chr3.1:71562325-71562344 | None:intergenic | 35.0% |
| ! | ATTTTACAAGTGTACGACTC+TGG | + | chr3.1:71564929-71564948 | MS.gene46246:intron | 35.0% |
| ! | CCAGAAAGTAAGAGTCTTTT+TGG | + | chr3.1:71564336-71564355 | MS.gene46246:intron | 35.0% |
| ! | GCTGAAAGTATGACTATGAA+AGG | - | chr3.1:71564697-71564716 | None:intergenic | 35.0% |
| ! | GGGAAGAGTTTGTTTAAACT+AGG | + | chr3.1:71564977-71564996 | MS.gene46246:intron | 35.0% |
| ! | TAGGTGCAACTTTGTTTGTT+GGG | + | chr3.1:71565708-71565727 | MS.gene46246:intron | 35.0% |
| ! | TGGTCTTAATCGTATAGCAT+TGG | + | chr3.1:71563567-71563586 | MS.gene46246:intron | 35.0% |
| ! | TTAGGTGCAACTTTGTTTGT+TGG | + | chr3.1:71565707-71565726 | MS.gene46246:intron | 35.0% |
| ! | TTGTTGGTTAATTCTCAGTC+AGG | + | chr3.1:71564615-71564634 | MS.gene46246:intron | 35.0% |
| ! | TTGTTTGTTGGGTCTTTGAT+TGG | + | chr3.1:71565719-71565738 | MS.gene46246:intron | 35.0% |
| ! | TTTGTAGTGCTTGGTAACAT+TGG | + | chr3.1:71563092-71563111 | MS.gene46246:intron | 35.0% |
| !! | AGTAGGTAATGGTATTTTCC+AGG | - | chr3.1:71564846-71564865 | None:intergenic | 35.0% |
| !! | AGTGGAGTGCTAAAATTTTG+AGG | - | chr3.1:71565146-71565165 | None:intergenic | 35.0% |
| !! | CTATAATCAACGAGAGTATC+AGG | - | chr3.1:71562570-71562589 | None:intergenic | 35.0% |
| !!! | CTTTTCACACTTCTAGGATA+AGG | + | chr3.1:71564201-71564220 | MS.gene46246:intron | 35.0% |
| !!! | GAATTTACCTTTTGAGGCAT+TGG | - | chr3.1:71562833-71562852 | None:intergenic | 35.0% |
| AAAGCAGCGACATTTAACGA+GGG | - | chr3.1:71563640-71563659 | None:intergenic | 40.0% | |
| AGCTTATTGTGCTTGCCAAA+CGG | + | chr3.1:71563384-71563403 | MS.gene46246:intron | 40.0% | |
| ATAGATGGATGGGTCATGTT+GGG | - | chr3.1:71565188-71565207 | None:intergenic | 40.0% | |
| ATCATCAATACGCCTTCTGT+AGG | + | chr3.1:71565758-71565777 | MS.gene46246:intron | 40.0% | |
| ATGAGTTTCGTTTCTACGCA+GGG | + | chr3.1:71562537-71562556 | MS.gene46246:CDS | 40.0% | |
| ATGTCTCTCCATTTCTTCTC+TGG | - | chr3.1:71565998-71566017 | None:intergenic | 40.0% | |
| CAAAATCCAGGACAAACTCA+GGG | - | chr3.1:71564531-71564550 | None:intergenic | 40.0% | |
| CGTCTTTCTATGACAGTTGT+TGG | - | chr3.1:71565961-71565980 | None:intergenic | 40.0% | |
| CTCCATTTCTTCTCTGGATT+GGG | - | chr3.1:71565992-71566011 | None:intergenic | 40.0% | |
| CTTGCTTGTGATAGCTGATA+AGG | + | chr3.1:71565821-71565840 | MS.gene46246:CDS | 40.0% | |
| GAATAAACATCTGTATCCGG+AGG | - | chr3.1:71562791-71562810 | None:intergenic | 40.0% | |
| GACAGGAAACCAACAATAGT+TGG | - | chr3.1:71564458-71564477 | None:intergenic | 40.0% | |
| GTAGATGTATGTTACTCCTC+CGG | + | chr3.1:71562772-71562791 | MS.gene46246:intron | 40.0% | |
| TATGAGTTTCGTTTCTACGC+AGG | + | chr3.1:71562536-71562555 | MS.gene46246:CDS | 40.0% | |
| TATTACCAGAGCCAAAGTTC+TGG | + | chr3.1:71564585-71564604 | MS.gene46246:CDS | 40.0% | |
| TCAAAATCCAGGACAAACTC+AGG | - | chr3.1:71564532-71564551 | None:intergenic | 40.0% | |
| TCCCTCTCAGATTTATACAG+AGG | - | chr3.1:71563896-71563915 | None:intergenic | 40.0% | |
| TCTCCATTTCTTCTCTGGAT+TGG | - | chr3.1:71565993-71566012 | None:intergenic | 40.0% | |
| TCTGGCAAATCAATGATACC+CGG | - | chr3.1:71564321-71564340 | None:intergenic | 40.0% | |
| TGAAATGGACGACGATGAAA+TGG | + | chr3.1:71562437-71562456 | MS.gene46246:CDS | 40.0% | |
| TGCTTGTGATAGCTGATAAG+GGG | + | chr3.1:71565823-71565842 | MS.gene46246:CDS | 40.0% | |
| TGTCATAGAAAGACGAGAGT+GGG | + | chr3.1:71565966-71565985 | MS.gene46246:CDS | 40.0% | |
| TTGGTTTCCTGTCACATTAC+AGG | + | chr3.1:71564465-71564484 | MS.gene46246:intron | 40.0% | |
| ! | ATCACTCTAGCTGACTTTCT+TGG | + | chr3.1:71565533-71565552 | MS.gene46246:intron | 40.0% |
| ! | TGAGTTTGTCCTGGATTTTG+AGG | + | chr3.1:71564531-71564550 | MS.gene46246:CDS | 40.0% |
| ! | TGGGTTGCCTTTGCATTTTA+AGG | + | chr3.1:71563929-71563948 | MS.gene46246:intron | 40.0% |
| !! | TGAGTTTTGTGTGCTGAGTT+GGG | + | chr3.1:71565280-71565299 | MS.gene46246:intron | 40.0% |
| AATGAGGGTTGTGGAGTTCT+GGG | - | chr3.1:71562300-71562319 | None:intergenic | 45.0% | |
| AATGGACGACGATGAAATGG+AGG | + | chr3.1:71562440-71562459 | MS.gene46246:CDS | 45.0% | |
| ACACTACAAAAATCGGAGGC+TGG | + | chr3.1:71564501-71564520 | MS.gene46246:CDS | 45.0% | |
| ACATCATTGTCAGGATCAGG+AGG | - | chr3.1:71562654-71562673 | None:intergenic | 45.0% | |
| AGACTTCGACATCGAGTATG+AGG | + | chr3.1:71562479-71562498 | MS.gene46246:CDS | 45.0% | |
| CAAAGCAGCGACATTTAACG+AGG | - | chr3.1:71563641-71563660 | None:intergenic | 45.0% | |
| CAATATCAACTCCCATGCAG+AGG | - | chr3.1:71565682-71565701 | None:intergenic | 45.0% | |
| CACTACAAAAATCGGAGGCT+GGG | + | chr3.1:71564502-71564521 | MS.gene46246:CDS | 45.0% | |
| CGAGAGTCTATGTGAACTCA+TGG | - | chr3.1:71565502-71565521 | None:intergenic | 45.0% | |
| CTGTCATAGAAAGACGAGAG+TGG | + | chr3.1:71565965-71565984 | MS.gene46246:CDS | 45.0% | |
| CTTTCACAACACCTCTGCAT+GGG | + | chr3.1:71565668-71565687 | MS.gene46246:intron | 45.0% | |
| GACCCATCCATCTATCAATG+AGG | + | chr3.1:71565193-71565212 | MS.gene46246:intron | 45.0% | |
| GATAGATGGATGGGTCATGT+TGG | - | chr3.1:71565189-71565208 | None:intergenic | 45.0% | |
| GTCGTCCATTTCATAGTCGT+CGG | - | chr3.1:71562430-71562449 | None:intergenic | 45.0% | |
| TAGTACTGTAGCTCAGGAGA+TGG | + | chr3.1:71563668-71563687 | MS.gene46246:intron | 45.0% | |
| TCGTCCATTTCATAGTCGTC+GGG | - | chr3.1:71562429-71562448 | None:intergenic | 45.0% | |
| TCTCAGATGCATCTATGGAG+TGG | - | chr3.1:71565164-71565183 | None:intergenic | 45.0% | |
| TCTTGCACCAATGCCTCAAA+AGG | + | chr3.1:71562823-71562842 | MS.gene46246:CDS | 45.0% | |
| TCTTTCACAACACCTCTGCA+TGG | + | chr3.1:71565667-71565686 | MS.gene46246:intron | 45.0% | |
| TGGGATCTCAGATGCATCTA+TGG | - | chr3.1:71565169-71565188 | None:intergenic | 45.0% | |
| TTTCGTTTCTACGCAGGGTT+GGG | + | chr3.1:71562542-71562561 | MS.gene46246:CDS | 45.0% | |
| ! | ACTTTGATTGGGGGCATGAT+TGG | + | chr3.1:71562898-71562917 | MS.gene46246:intron | 45.0% |
| ! | AGATGCGCGCAAAGTGATTT+TGG | + | chr3.1:71563827-71563846 | MS.gene46246:CDS | 45.0% |
| ! | GTAGTGCTTGGTAACATTGG+CGG | + | chr3.1:71563095-71563114 | MS.gene46246:intron | 45.0% |
| !! | GTGAGTTTTGTGTGCTGAGT+TGG | + | chr3.1:71565279-71565298 | MS.gene46246:intron | 45.0% |
| ACTCAAGAAAGCTCGTTGCC+TGG | - | chr3.1:71564177-71564196 | None:intergenic | 50.0% | |
| AGAGGGAAGTCGAGAAGGTA+TGG | + | chr3.1:71563909-71563928 | MS.gene46246:intron | 50.0% | |
| AGGATCTCGACGTGCATCAA+CGG | - | chr3.1:71563876-71563895 | None:intergenic | 50.0% | |
| ATCTGAGAGGGAAGTCGAGA+AGG | + | chr3.1:71563904-71563923 | MS.gene46246:CDS | 50.0% | |
| CATTTCATAGTCGTCGGGAC+CGG | - | chr3.1:71562424-71562443 | None:intergenic | 50.0% | |
| CTGGAGCTGTTACCTACAGA+AGG | - | chr3.1:71565773-71565792 | None:intergenic | 50.0% | |
| CTTCTGTAGGTAACAGCTCC+AGG | + | chr3.1:71565771-71565790 | MS.gene46246:intron | 50.0% | |
| GAAGAGGAGAATGAGGGTTG+TGG | - | chr3.1:71562309-71562328 | None:intergenic | 50.0% | |
| GAATGAGGGTTGTGGAGTTC+TGG | - | chr3.1:71562301-71562320 | None:intergenic | 50.0% | |
| GACATCGAGTATGAGGCCAA+CGG | + | chr3.1:71562486-71562505 | MS.gene46246:CDS | 50.0% | |
| GGCCCAATCCAGAGAAGAAA+TGG | + | chr3.1:71565987-71566006 | MS.gene46246:CDS | 50.0% | |
| GTTTCGTTTCTACGCAGGGT+TGG | + | chr3.1:71562541-71562560 | MS.gene46246:CDS | 50.0% | |
| TCCAAACTTCCCCTACCTCT+CGG | + | chr3.1:71562352-71562371 | MS.gene46246:CDS | 50.0% | |
| TGAAAGGAAGAGGAAGGAGG+AGG | - | chr3.1:71562256-71562275 | None:intergenic | 50.0% | |
| TGGACATGTACGAGTCCGTT+TGG | - | chr3.1:71563402-71563421 | None:intergenic | 50.0% | |
| TGTAGGTAACAGCTCCAGGA+GGG | + | chr3.1:71565775-71565794 | MS.gene46246:intron | 50.0% | |
| ! | CCAGAGCCAAAGTTCTGGTA+AGG | + | chr3.1:71564590-71564609 | MS.gene46246:intron | 50.0% |
| ! | CCTTACCAGAACTTTGGCTC+TGG | - | chr3.1:71564593-71564612 | None:intergenic | 50.0% |
| ! | GAGGGAAGTCGAGAAGGTAT+GGG | + | chr3.1:71563910-71563929 | MS.gene46246:intron | 50.0% |
| !! | AGGCATTGGTGCAAGAACCT+TGG | - | chr3.1:71562819-71562838 | None:intergenic | 50.0% |
| !! | AGGGTAGACTTGCTAGTTCG+AGG | + | chr3.1:71564997-71565016 | MS.gene46246:intron | 50.0% |
| !! | CTATCTCTAGTTCTCCCTCC+TGG | - | chr3.1:71565792-71565811 | None:intergenic | 50.0% |
| !! | GGCATTGGTGCAAGAACCTT+GGG | - | chr3.1:71562818-71562837 | None:intergenic | 50.0% |
| AACCAGATCCCTCCACACAC+AGG | - | chr3.1:71565626-71565645 | None:intergenic | 55.0% | |
| AAGGAAGAGGAAGGAGGAGG+TGG | - | chr3.1:71562253-71562272 | None:intergenic | 55.0% | |
| AGATCCCTCCACACACAGGT+GGG | - | chr3.1:71565622-71565641 | None:intergenic | 55.0% | |
| CGCAATGTCAACATCGCCGT+TGG | - | chr3.1:71562505-71562524 | None:intergenic | 55.0% | |
| CGGCGATGTTGACATTGCGA+CGG | + | chr3.1:71562506-71562525 | MS.gene46246:CDS | 55.0% | |
| CGGTCCCGACGACTATGAAA+TGG | + | chr3.1:71562422-71562441 | MS.gene46246:CDS | 55.0% | |
| CTGTAGGTAACAGCTCCAGG+AGG | + | chr3.1:71565774-71565793 | MS.gene46246:intron | 55.0% | |
| GAGAGGTAGGGGAAGTTTGG+AGG | - | chr3.1:71562353-71562372 | None:intergenic | 55.0% | |
| GAGGAAGGAGGAGGTGGAAA+TGG | - | chr3.1:71562247-71562266 | None:intergenic | 55.0% | |
| GGATCTCGACGTGCATCAAC+GGG | - | chr3.1:71563875-71563894 | None:intergenic | 55.0% | |
| GGGGAAGTTTGGAGGATGAG+AGG | - | chr3.1:71562345-71562364 | None:intergenic | 55.0% | |
| GGGTGAAAGGAAGAGGAAGG+AGG | - | chr3.1:71562259-71562278 | None:intergenic | 55.0% | |
| TCCACACACAGGTGGGAAGA+GGG | - | chr3.1:71565615-71565634 | None:intergenic | 55.0% | |
| TCTTCCCACCTGTGTGTGGA+GGG | + | chr3.1:71565615-71565634 | MS.gene46246:intron | 55.0% | |
| ! | CTGGGAAGAGGTGGTAGTGA+CGG | - | chr3.1:71562282-71562301 | None:intergenic | 55.0% |
| ! | TGGGAAGAGGTGGTAGTGAC+GGG | - | chr3.1:71562281-71562300 | None:intergenic | 55.0% |
| !! | GGTTGTGGAGTTCTGGGAAG+AGG | - | chr3.1:71562294-71562313 | None:intergenic | 55.0% |
| !! | TAAGAATGGGTTGCGCCGAG+AGG | - | chr3.1:71562370-71562389 | None:intergenic | 55.0% |
| !! | TGTGGAGTTCTGGGAAGAGG+TGG | - | chr3.1:71562291-71562310 | None:intergenic | 55.0% |
| CACCTGTGTGTGGAGGGATC+TGG | + | chr3.1:71565621-71565640 | MS.gene46246:intron | 60.0% | |
| CAGATCCCTCCACACACAGG+TGG | - | chr3.1:71565623-71565642 | None:intergenic | 60.0% | |
| CGGGGGTGAAAGGAAGAGGA+AGG | - | chr3.1:71562262-71562281 | None:intergenic | 60.0% | |
| CTCCACACACAGGTGGGAAG+AGG | - | chr3.1:71565616-71565635 | None:intergenic | 60.0% | |
| CTCTTCCCACCTGTGTGTGG+AGG | + | chr3.1:71565614-71565633 | MS.gene46246:intron | 60.0% | |
| GCCGAGAGGTAGGGGAAGTT+TGG | - | chr3.1:71562356-71562375 | None:intergenic | 60.0% | |
| GGATTCGACGTCACCGTCGT+CGG | - | chr3.1:71562400-71562419 | None:intergenic | 60.0% | |
| GGGAGACCCTGAGTTTGTCC+TGG | + | chr3.1:71564522-71564541 | MS.gene46246:CDS | 60.0% | |
| TCCCTCTTCCCACCTGTGTG+TGG | + | chr3.1:71565611-71565630 | MS.gene46246:intron | 60.0% | |
| TCTCGACGTGCATCAACGGG+TGG | - | chr3.1:71563872-71563891 | None:intergenic | 60.0% | |
| TTCATAGTCGTCGGGACCGG+CGG | - | chr3.1:71562421-71562440 | None:intergenic | 60.0% | |
| ! | ATGGGTTGCGCCGAGAGGTA+GGG | - | chr3.1:71562365-71562384 | None:intergenic | 60.0% |
| ! | CGTCGGCGCGGGTTAAGAAT+GGG | - | chr3.1:71562383-71562402 | None:intergenic | 60.0% |
| ! | GGAAGAGGTGGTAGTGACGG+GGG | - | chr3.1:71562279-71562298 | None:intergenic | 60.0% |
| ! | GGGAAGAGGTGGTAGTGACG+GGG | - | chr3.1:71562280-71562299 | None:intergenic | 60.0% |
| ! | GTGACGGGGGTGAAAGGAAG+AGG | - | chr3.1:71562266-71562285 | None:intergenic | 60.0% |
| ! | GTGGTAGTGACGGGGGTGAA+AGG | - | chr3.1:71562272-71562291 | None:intergenic | 60.0% |
| ! | TCGTCGGCGCGGGTTAAGAA+TGG | - | chr3.1:71562384-71562403 | None:intergenic | 60.0% |
| ! | TTCTTAACCCGCGCCGACGA+CGG | + | chr3.1:71562384-71562403 | MS.gene46246:CDS | 60.0% |
| !! | AATGGGTTGCGCCGAGAGGT+AGG | - | chr3.1:71562366-71562385 | None:intergenic | 60.0% |
| GACGGTGACGTCGAATCCGC+CGG | + | chr3.1:71562402-71562421 | MS.gene46246:CDS | 65.0% | |
| TGGGTTGCGCCGAGAGGTAG+GGG | - | chr3.1:71562364-71562383 | None:intergenic | 65.0% | |
| CGACGTCACCGTCGTCGGCG+CGG | - | chr3.1:71562395-71562414 | None:intergenic | 75.0% | |
| GACGTCACCGTCGTCGGCGC+GGG | - | chr3.1:71562394-71562413 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 71562240 | 71566059 | 71562240 | ID=MS.gene46246 |
| chr3.1 | mRNA | 71562240 | 71566059 | 71562240 | ID=MS.gene46246.t1;Parent=MS.gene46246 |
| chr3.1 | exon | 71562240 | 71562689 | 71562240 | ID=MS.gene46246.t1.exon1;Parent=MS.gene46246.t1 |
| chr3.1 | CDS | 71562240 | 71562689 | 71562240 | ID=cds.MS.gene46246.t1;Parent=MS.gene46246.t1 |
| chr3.1 | exon | 71562776 | 71562844 | 71562776 | ID=MS.gene46246.t1.exon2;Parent=MS.gene46246.t1 |
| chr3.1 | CDS | 71562776 | 71562844 | 71562776 | ID=cds.MS.gene46246.t1;Parent=MS.gene46246.t1 |
| chr3.1 | exon | 71563821 | 71563925 | 71563821 | ID=MS.gene46246.t1.exon3;Parent=MS.gene46246.t1 |
| chr3.1 | CDS | 71563821 | 71563925 | 71563821 | ID=cds.MS.gene46246.t1;Parent=MS.gene46246.t1 |
| chr3.1 | exon | 71564487 | 71564606 | 71564487 | ID=MS.gene46246.t1.exon4;Parent=MS.gene46246.t1 |
| chr3.1 | CDS | 71564487 | 71564606 | 71564487 | ID=cds.MS.gene46246.t1;Parent=MS.gene46246.t1 |
| chr3.1 | exon | 71565780 | 71565869 | 71565780 | ID=MS.gene46246.t1.exon5;Parent=MS.gene46246.t1 |
| chr3.1 | CDS | 71565780 | 71565869 | 71565780 | ID=cds.MS.gene46246.t1;Parent=MS.gene46246.t1 |
| chr3.1 | exon | 71565943 | 71566059 | 71565943 | ID=MS.gene46246.t1.exon6;Parent=MS.gene46246.t1 |
| chr3.1 | CDS | 71565943 | 71566059 | 71565943 | ID=cds.MS.gene46246.t1;Parent=MS.gene46246.t1 |
| Gene Sequence |
| Protein sequence |
