Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56089.t1 | XP_003588537.2 | 81.8 | 620 | 113 | 0 | 1 | 620 | 16 | 635 | 8.40E-102 | 381.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56089.t1 | Q8S9D1 | 60.4 | 53 | 21 | 0 | 47 | 99 | 307 | 359 | 4.6e-08 | 61.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56089.t1 | G7I4C0 | 81.8 | 620 | 113 | 0 | 1 | 620 | 16 | 635 | 6.0e-102 | 381.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene56089 | 0.821894 | 3.17E-53 | -1.69E-46 |
| MS.gene049284 | MS.gene56089 | 0.819173 | 1.33E-52 | -1.69E-46 |
| MS.gene049346 | MS.gene56089 | 0.80583 | 1.10E-49 | -1.69E-46 |
| MS.gene049351 | MS.gene56089 | 0.846529 | 2.05E-59 | -1.69E-46 |
| MS.gene049356 | MS.gene56089 | 0.805152 | 1.53E-49 | -1.69E-46 |
| MS.gene049427 | MS.gene56089 | 0.852597 | 4.16E-61 | -1.69E-46 |
| MS.gene049491 | MS.gene56089 | 0.828826 | 7.25E-55 | -1.69E-46 |
| MS.gene049661 | MS.gene56089 | 0.859879 | 3.05E-63 | -1.69E-46 |
| MS.gene049662 | MS.gene56089 | 0.858429 | 8.29E-63 | -1.69E-46 |
| MS.gene049758 | MS.gene56089 | 0.829063 | 6.35E-55 | -1.69E-46 |
| MS.gene049805 | MS.gene56089 | 0.801921 | 7.17E-49 | -1.69E-46 |
| MS.gene049910 | MS.gene56089 | 0.811173 | 7.99E-51 | -1.69E-46 |
| MS.gene050076 | MS.gene56089 | 0.810306 | 1.23E-50 | -1.69E-46 |
| MS.gene050099 | MS.gene56089 | 0.812321 | 4.50E-51 | -1.69E-46 |
| MS.gene050231 | MS.gene56089 | 0.830399 | 3.00E-55 | -1.69E-46 |
| MS.gene050301 | MS.gene56089 | 0.887237 | 1.70E-72 | -1.69E-46 |
| MS.gene050397 | MS.gene56089 | 0.854937 | 8.82E-62 | -1.69E-46 |
| MS.gene050400 | MS.gene56089 | 0.810392 | 1.18E-50 | -1.69E-46 |
| MS.gene050404 | MS.gene56089 | 0.819837 | 9.42E-53 | -1.69E-46 |
| MS.gene050406 | MS.gene56089 | 0.854421 | 1.25E-61 | -1.69E-46 |
| MS.gene050426 | MS.gene56089 | -0.832847 | 7.48E-56 | -1.69E-46 |
| MS.gene050432 | MS.gene56089 | 0.818409 | 1.99E-52 | -1.69E-46 |
| MS.gene050464 | MS.gene56089 | 0.865869 | 4.32E-65 | -1.69E-46 |
| MS.gene050529 | MS.gene56089 | 0.889267 | 2.82E-73 | -1.69E-46 |
| MS.gene050593 | MS.gene56089 | 0.800706 | 1.27E-48 | -1.69E-46 |
| MS.gene050670 | MS.gene56089 | 0.878212 | 3.37E-69 | -1.69E-46 |
| MS.gene050812 | MS.gene56089 | 0.863822 | 1.89E-64 | -1.69E-46 |
| MS.gene050971 | MS.gene56089 | 0.803922 | 2.77E-49 | -1.69E-46 |
| MS.gene05101 | MS.gene56089 | 0.869401 | 3.18E-66 | -1.69E-46 |
| MS.gene05105 | MS.gene56089 | 0.87502 | 4.28E-68 | -1.69E-46 |
| MS.gene051387 | MS.gene56089 | 0.810103 | 1.36E-50 | -1.69E-46 |
| MS.gene051471 | MS.gene56089 | 0.852429 | 4.64E-61 | -1.69E-46 |
| MS.gene051525 | MS.gene56089 | 0.842662 | 2.25E-58 | -1.69E-46 |
| MS.gene051582 | MS.gene56089 | 0.85113 | 1.08E-60 | -1.69E-46 |
| MS.gene051605 | MS.gene56089 | 0.814007 | 1.92E-51 | -1.69E-46 |
| MS.gene051666 | MS.gene56089 | 0.841121 | 5.76E-58 | -1.69E-46 |
| MS.gene051692 | MS.gene56089 | 0.814176 | 1.76E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene56089 | 0.841784 | 3.85E-58 | -1.69E-46 |
| MS.gene051877 | MS.gene56089 | 0.824941 | 6.15E-54 | -1.69E-46 |
| MS.gene052011 | MS.gene56089 | -0.834132 | 3.58E-56 | -1.69E-46 |
| MS.gene052077 | MS.gene56089 | 0.822268 | 2.59E-53 | -1.69E-46 |
| MS.gene052078 | MS.gene56089 | 0.869274 | 3.50E-66 | -1.69E-46 |
| MS.gene052128 | MS.gene56089 | -0.811221 | 7.80E-51 | -1.69E-46 |
| MS.gene052135 | MS.gene56089 | 0.802101 | 6.58E-49 | -1.69E-46 |
| MS.gene052178 | MS.gene56089 | 0.840995 | 6.21E-58 | -1.69E-46 |
| MS.gene052188 | MS.gene56089 | 0.88627 | 3.96E-72 | -1.69E-46 |
| MS.gene052253 | MS.gene56089 | 0.898818 | 3.65E-77 | -1.69E-46 |
| MS.gene052310 | MS.gene56089 | 0.911503 | 5.65E-83 | -1.69E-46 |
| MS.gene052322 | MS.gene56089 | 0.860176 | 2.48E-63 | -1.69E-46 |
| MS.gene052326 | MS.gene56089 | 0.826277 | 2.96E-54 | -1.69E-46 |
| MS.gene052340 | MS.gene56089 | 0.884965 | 1.22E-71 | -1.69E-46 |
| MS.gene052414 | MS.gene56089 | 0.818775 | 1.64E-52 | -1.69E-46 |
| MS.gene052421 | MS.gene56089 | 0.826966 | 2.03E-54 | -1.69E-46 |
| MS.gene052481 | MS.gene56089 | 0.880105 | 7.22E-70 | -1.69E-46 |
| MS.gene052484 | MS.gene56089 | 0.840414 | 8.82E-58 | -1.69E-46 |
| MS.gene052485 | MS.gene56089 | 0.874702 | 5.49E-68 | -1.69E-46 |
| MS.gene052505 | MS.gene56089 | 0.801069 | 1.07E-48 | -1.69E-46 |
| MS.gene052982 | MS.gene56089 | 0.824896 | 6.29E-54 | -1.69E-46 |
| MS.gene053103 | MS.gene56089 | 0.858495 | 7.92E-63 | -1.69E-46 |
| MS.gene053104 | MS.gene56089 | 0.807555 | 4.77E-50 | -1.69E-46 |
| MS.gene053107 | MS.gene56089 | 0.803487 | 3.41E-49 | -1.69E-46 |
| MS.gene053209 | MS.gene56089 | 0.830982 | 2.16E-55 | -1.69E-46 |
| MS.gene053322 | MS.gene56089 | 0.818508 | 1.89E-52 | -1.69E-46 |
| MS.gene053557 | MS.gene56089 | 0.854409 | 1.25E-61 | -1.69E-46 |
| MS.gene053758 | MS.gene56089 | 0.820749 | 5.82E-53 | -1.69E-46 |
| MS.gene053836 | MS.gene56089 | 0.859688 | 3.48E-63 | -1.69E-46 |
| MS.gene053928 | MS.gene56089 | 0.814574 | 1.44E-51 | -1.69E-46 |
| MS.gene053971 | MS.gene56089 | 0.81094 | 8.98E-51 | -1.69E-46 |
| MS.gene054010 | MS.gene56089 | 0.815462 | 9.13E-52 | -1.69E-46 |
| MS.gene054011 | MS.gene56089 | 0.813462 | 2.53E-51 | -1.69E-46 |
| MS.gene054012 | MS.gene56089 | 0.815109 | 1.09E-51 | -1.69E-46 |
| MS.gene054013 | MS.gene56089 | 0.810263 | 1.26E-50 | -1.69E-46 |
| MS.gene054123 | MS.gene56089 | 0.84065 | 7.65E-58 | -1.69E-46 |
| MS.gene054183 | MS.gene56089 | 0.820248 | 7.58E-53 | -1.69E-46 |
| MS.gene054349 | MS.gene56089 | 0.832017 | 1.20E-55 | -1.69E-46 |
| MS.gene054376 | MS.gene56089 | 0.802618 | 5.15E-49 | -1.69E-46 |
| MS.gene054473 | MS.gene56089 | 0.814451 | 1.53E-51 | -1.69E-46 |
| MS.gene05455 | MS.gene56089 | 0.845282 | 4.48E-59 | -1.69E-46 |
| MS.gene054719 | MS.gene56089 | 0.823388 | 1.42E-53 | -1.69E-46 |
| MS.gene054802 | MS.gene56089 | 0.807954 | 3.93E-50 | -1.69E-46 |
| MS.gene054803 | MS.gene56089 | 0.802138 | 6.47E-49 | -1.69E-46 |
| MS.gene054804 | MS.gene56089 | 0.806909 | 6.54E-50 | -1.69E-46 |
| MS.gene054955 | MS.gene56089 | 0.826864 | 2.15E-54 | -1.69E-46 |
| MS.gene054983 | MS.gene56089 | 0.837073 | 6.45E-57 | -1.69E-46 |
| MS.gene05505 | MS.gene56089 | 0.812123 | 4.97E-51 | -1.69E-46 |
| MS.gene055116 | MS.gene56089 | 0.90007 | 1.06E-77 | -1.69E-46 |
| MS.gene055277 | MS.gene56089 | 0.848152 | 7.35E-60 | -1.69E-46 |
| MS.gene055370 | MS.gene56089 | 0.807323 | 5.35E-50 | -1.69E-46 |
| MS.gene055390 | MS.gene56089 | 0.821263 | 4.43E-53 | -1.69E-46 |
| MS.gene055412 | MS.gene56089 | 0.818293 | 2.11E-52 | -1.69E-46 |
| MS.gene055422 | MS.gene56089 | 0.860671 | 1.76E-63 | -1.69E-46 |
| MS.gene055428 | MS.gene56089 | 0.877691 | 5.13E-69 | -1.69E-46 |
| MS.gene05553 | MS.gene56089 | 0.841301 | 5.16E-58 | -1.69E-46 |
| MS.gene055601 | MS.gene56089 | -0.820247 | 7.59E-53 | -1.69E-46 |
| MS.gene055604 | MS.gene56089 | 0.81658 | 5.14E-52 | -1.69E-46 |
| MS.gene056191 | MS.gene56089 | 0.860039 | 2.73E-63 | -1.69E-46 |
| MS.gene056407 | MS.gene56089 | 0.850957 | 1.21E-60 | -1.69E-46 |
| MS.gene056410 | MS.gene56089 | 0.834132 | 3.58E-56 | -1.69E-46 |
| MS.gene056452 | MS.gene56089 | 0.800861 | 1.18E-48 | -1.69E-46 |
| MS.gene056511 | MS.gene56089 | 0.826079 | 3.30E-54 | -1.69E-46 |
| MS.gene056609 | MS.gene56089 | 0.810561 | 1.08E-50 | -1.69E-46 |
| MS.gene056612 | MS.gene56089 | 0.844247 | 8.51E-59 | -1.69E-46 |
| MS.gene056659 | MS.gene56089 | 0.808074 | 3.70E-50 | -1.69E-46 |
| MS.gene056723 | MS.gene56089 | 0.80642 | 8.30E-50 | -1.69E-46 |
| MS.gene056796 | MS.gene56089 | 0.859937 | 2.93E-63 | -1.69E-46 |
| MS.gene056899 | MS.gene56089 | -0.844512 | 7.22E-59 | -1.69E-46 |
| MS.gene057011 | MS.gene56089 | 0.813817 | 2.11E-51 | -1.69E-46 |
| MS.gene05702 | MS.gene56089 | 0.871913 | 4.76E-67 | -1.69E-46 |
| MS.gene057121 | MS.gene56089 | 0.856703 | 2.69E-62 | -1.69E-46 |
| MS.gene057123 | MS.gene56089 | 0.829729 | 4.37E-55 | -1.69E-46 |
| MS.gene057124 | MS.gene56089 | 0.825381 | 4.83E-54 | -1.69E-46 |
| MS.gene057129 | MS.gene56089 | 0.800181 | 1.63E-48 | -1.69E-46 |
| MS.gene057146 | MS.gene56089 | 0.841012 | 6.15E-58 | -1.69E-46 |
| MS.gene057245 | MS.gene56089 | 0.821717 | 3.48E-53 | -1.69E-46 |
| MS.gene057295 | MS.gene56089 | 0.818755 | 1.66E-52 | -1.69E-46 |
| MS.gene05733 | MS.gene56089 | 0.848573 | 5.62E-60 | -1.69E-46 |
| MS.gene057396 | MS.gene56089 | 0.828285 | 9.79E-55 | -1.69E-46 |
| MS.gene057448 | MS.gene56089 | 0.832577 | 8.73E-56 | -1.69E-46 |
| MS.gene057449 | MS.gene56089 | 0.818903 | 1.54E-52 | -1.69E-46 |
| MS.gene057450 | MS.gene56089 | 0.829785 | 4.24E-55 | -1.69E-46 |
| MS.gene057749 | MS.gene56089 | 0.877597 | 5.53E-69 | -1.69E-46 |
| MS.gene057823 | MS.gene56089 | 0.870198 | 1.75E-66 | -1.69E-46 |
| MS.gene057825 | MS.gene56089 | 0.826882 | 2.13E-54 | -1.69E-46 |
| MS.gene058002 | MS.gene56089 | 0.882757 | 7.97E-71 | -1.69E-46 |
| MS.gene058007 | MS.gene56089 | 0.820507 | 6.61E-53 | -1.69E-46 |
| MS.gene058019 | MS.gene56089 | 0.808921 | 2.44E-50 | -1.69E-46 |
| MS.gene058082 | MS.gene56089 | 0.813327 | 2.71E-51 | -1.69E-46 |
| MS.gene05811 | MS.gene56089 | 0.882674 | 8.54E-71 | -1.69E-46 |
| MS.gene058142 | MS.gene56089 | 0.850793 | 1.35E-60 | -1.69E-46 |
| MS.gene058233 | MS.gene56089 | 0.869471 | 3.02E-66 | -1.69E-46 |
| MS.gene058276 | MS.gene56089 | 0.857103 | 2.05E-62 | -1.69E-46 |
| MS.gene058293 | MS.gene56089 | 0.85018 | 2.01E-60 | -1.69E-46 |
| MS.gene058365 | MS.gene56089 | 0.812872 | 3.41E-51 | -1.69E-46 |
| MS.gene058376 | MS.gene56089 | 0.849414 | 3.28E-60 | -1.69E-46 |
| MS.gene05842 | MS.gene56089 | 0.812039 | 5.18E-51 | -1.69E-46 |
| MS.gene058444 | MS.gene56089 | 0.838003 | 3.72E-57 | -1.69E-46 |
| MS.gene058660 | MS.gene56089 | 0.883862 | 3.13E-71 | -1.69E-46 |
| MS.gene058700 | MS.gene56089 | 0.822215 | 2.67E-53 | -1.69E-46 |
| MS.gene058710 | MS.gene56089 | 0.809762 | 1.61E-50 | -1.69E-46 |
| MS.gene058787 | MS.gene56089 | 0.82041 | 6.96E-53 | -1.69E-46 |
| MS.gene058845 | MS.gene56089 | 0.82565 | 4.18E-54 | -1.69E-46 |
| MS.gene05886 | MS.gene56089 | 0.829857 | 4.07E-55 | -1.69E-46 |
| MS.gene058928 | MS.gene56089 | 0.876318 | 1.54E-68 | -1.69E-46 |
| MS.gene058993 | MS.gene56089 | 0.80433 | 2.28E-49 | -1.69E-46 |
| MS.gene059011 | MS.gene56089 | 0.814026 | 1.90E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene56089 | 0.898469 | 5.15E-77 | -1.69E-46 |
| MS.gene059141 | MS.gene56089 | 0.893779 | 4.57E-75 | -1.69E-46 |
| MS.gene059285 | MS.gene56089 | 0.832608 | 8.58E-56 | -1.69E-46 |
| MS.gene059294 | MS.gene56089 | 0.849819 | 2.53E-60 | -1.69E-46 |
| MS.gene059326 | MS.gene56089 | 0.809375 | 1.95E-50 | -1.69E-46 |
| MS.gene059366 | MS.gene56089 | 0.831433 | 1.67E-55 | -1.69E-46 |
| MS.gene059420 | MS.gene56089 | 0.849375 | 3.37E-60 | -1.69E-46 |
| MS.gene059518 | MS.gene56089 | 0.835469 | 1.65E-56 | -1.69E-46 |
| MS.gene059536 | MS.gene56089 | 0.859811 | 3.19E-63 | -1.69E-46 |
| MS.gene059597 | MS.gene56089 | 0.874392 | 7.00E-68 | -1.69E-46 |
| MS.gene059676 | MS.gene56089 | 0.858795 | 6.45E-63 | -1.69E-46 |
| MS.gene059688 | MS.gene56089 | 0.88846 | 5.79E-73 | -1.69E-46 |
| MS.gene059692 | MS.gene56089 | 0.886495 | 3.26E-72 | -1.69E-46 |
| MS.gene059695 | MS.gene56089 | 0.890137 | 1.29E-73 | -1.69E-46 |
| MS.gene059807 | MS.gene56089 | 0.808214 | 3.46E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene56089 | 0.892183 | 2.01E-74 | -1.69E-46 |
| MS.gene059894 | MS.gene56089 | 0.857432 | 1.64E-62 | -1.69E-46 |
| MS.gene059960 | MS.gene56089 | 0.828765 | 7.49E-55 | -1.69E-46 |
| MS.gene06037 | MS.gene56089 | 0.834856 | 2.35E-56 | -1.69E-46 |
| MS.gene060403 | MS.gene56089 | 0.86615 | 3.52E-65 | -1.69E-46 |
| MS.gene060407 | MS.gene56089 | 0.853716 | 1.99E-61 | -1.69E-46 |
| MS.gene060804 | MS.gene56089 | 0.832382 | 9.76E-56 | -1.69E-46 |
| MS.gene060818 | MS.gene56089 | 0.814448 | 1.53E-51 | -1.69E-46 |
| MS.gene060837 | MS.gene56089 | 0.816928 | 4.29E-52 | -1.69E-46 |
| MS.gene06090 | MS.gene56089 | 0.813526 | 2.45E-51 | -1.69E-46 |
| MS.gene060986 | MS.gene56089 | 0.827549 | 1.47E-54 | -1.69E-46 |
| MS.gene061041 | MS.gene56089 | 0.814842 | 1.25E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene56089 | 0.882911 | 7.00E-71 | -1.69E-46 |
| MS.gene061051 | MS.gene56089 | -0.814634 | 1.39E-51 | -1.69E-46 |
| MS.gene061154 | MS.gene56089 | 0.831242 | 1.87E-55 | -1.69E-46 |
| MS.gene061159 | MS.gene56089 | 0.810498 | 1.12E-50 | -1.69E-46 |
| MS.gene061200 | MS.gene56089 | 0.81259 | 3.93E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 123 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACAAGATGTGTGAATT+AGG | 0.185245 | 1.4:+11284406 | MS.gene56089:CDS |
| TATGAAAATCCTCCATTAAT+TGG | 0.197161 | 1.4:-11284513 | None:intergenic |
| CTTCTGCATATCCCCAAATA+AGG | 0.238942 | 1.4:-11284459 | None:intergenic |
| AGAAGAAATGCTCCAATTAA+TGG | 0.240569 | 1.4:+11284501 | MS.gene56089:CDS |
| GCCTCAAAAGTCCTCAAATT+TGG | 0.250783 | 1.4:-11284436 | None:intergenic |
| ATAAAAGGTTATGGTATTAT+AGG | 0.252691 | 1.4:+11283005 | MS.gene56089:CDS |
| GTGTTTAATGTCCTGATTAA+TGG | 0.268885 | 1.4:+11283413 | MS.gene56089:CDS |
| TTTGTAAATATAACAACATT+TGG | 0.269492 | 1.4:-11284331 | None:intergenic |
| TATTGAATTGATCCTTTGTT+TGG | 0.270344 | 1.4:-11284632 | None:intergenic |
| ACTTATAGCAACTTGATAAA+AGG | 0.278007 | 1.4:+11282990 | MS.gene56089:CDS |
| CCTTTACAGAATAAAGGATT+TGG | 0.285084 | 1.4:+11283370 | MS.gene56089:CDS |
| AGCAAGAATGTGGACTTCTT+AGG | 0.288478 | 1.4:-11284541 | None:intergenic |
| TTGACAAGATGTGTGAATTA+GGG | 0.298841 | 1.4:+11284407 | MS.gene56089:CDS |
| AAGGAGCAATATGTGGCTTT+TGG | 0.305661 | 1.4:-11284696 | None:intergenic |
| GCAGTTCCTTTACAGAATAA+AGG | 0.317875 | 1.4:+11283364 | MS.gene56089:CDS |
| CTTTACAGAATAAAGGATTT+GGG | 0.319520 | 1.4:+11283371 | MS.gene56089:CDS |
| TTCGACAACATGTTGAAATC+TGG | 0.326785 | 1.4:+11284196 | MS.gene56089:CDS |
| AACTGTAAGAGACTGCTTAA+AGG | 0.329191 | 1.4:-11284715 | None:intergenic |
| TCAAAAGCTTGGCACTTTGC+TGG | 0.335001 | 1.4:+11284568 | MS.gene56089:CDS |
| GTGTGTAAGATGCCTGCTTC+TGG | 0.340807 | 1.4:+11283161 | MS.gene56089:CDS |
| ACGGTAAAAGTTCTCTCATT+TGG | 0.341817 | 1.4:-11283296 | None:intergenic |
| ATAAATGCATTTGCTGAATC+CGG | 0.347455 | 1.4:+11282900 | MS.gene56089:CDS |
| TTATAAAGAAGGTCAAATTA+AGG | 0.371401 | 1.4:+11283334 | MS.gene56089:CDS |
| ATGGAGCCAAGCTGGATTCC+AGG | 0.377121 | 1.4:+11284156 | MS.gene56089:CDS |
| GCTCCCAAGAGATGCTGATT+TGG | 0.380660 | 1.4:+11284804 | MS.gene56089:CDS |
| ATAAGTGGATGGGGCAGTTC+TGG | 0.384738 | 1.4:+11284358 | MS.gene56089:CDS |
| TTGTAAATATAACAACATTT+GGG | 0.385223 | 1.4:-11284330 | None:intergenic |
| CGTACCTGTAGATTTGTTGA+AGG | 0.388616 | 1.4:+11284865 | MS.gene56089:CDS |
| ATACTATAAGCATGCACATC+TGG | 0.394469 | 1.4:-11284226 | None:intergenic |
| GTGTTGAAAGTTACAGAATC+AGG | 0.396627 | 1.4:-11283191 | None:intergenic |
| AGAGATGCAGAGGAAAGGTT+TGG | 0.399303 | 1.4:+11283271 | MS.gene56089:CDS |
| AGCAACTTGATAAAAGGTTA+TGG | 0.400176 | 1.4:+11282996 | MS.gene56089:CDS |
| CCCTTTCAGTATAAGAATAC+TGG | 0.406511 | 1.4:-11284958 | None:intergenic |
| ATTGCGAGGGATGAAAATTC+AGG | 0.409353 | 1.4:+11282597 | MS.gene56089:CDS |
| GCAAACATGAAGAAAGGAAA+AGG | 0.416968 | 1.4:+11281491 | MS.gene56089:CDS |
| TATCCACAAAACCATTAATC+AGG | 0.428041 | 1.4:-11283424 | None:intergenic |
| AATTTCCATCAGTTAACATA+AGG | 0.429722 | 1.4:-11283058 | None:intergenic |
| TTTCCGTCATGTGTCATAAA+CGG | 0.430269 | 1.4:+11284890 | MS.gene56089:CDS |
| AAATTTGCTTGCATTTATCC+TGG | 0.431388 | 1.4:-11284174 | None:intergenic |
| GTCACCAAATCAGCATCTCT+TGG | 0.434156 | 1.4:-11284808 | None:intergenic |
| TAGGGGTTTCTCCAAATTTG+AGG | 0.434838 | 1.4:+11284425 | MS.gene56089:CDS |
| GTCAAAGCATTGTGTCAATC+GGG | 0.435639 | 1.4:+11283113 | MS.gene56089:CDS |
| TCTTGCTTGTTTCAAAAGCT+TGG | 0.438769 | 1.4:+11284557 | MS.gene56089:CDS |
| CCAAATCCTTTATTCTGTAA+AGG | 0.447737 | 1.4:-11283370 | None:intergenic |
| AGCATTTCTTCTGATTTCCA+TGG | 0.448983 | 1.4:-11284490 | None:intergenic |
| GCAAGAATGTGGACTTCTTA+GGG | 0.450232 | 1.4:-11284540 | None:intergenic |
| TGTCAAAGCATTGTGTCAAT+CGG | 0.450790 | 1.4:+11283112 | MS.gene56089:CDS |
| ATATTTACAAATGTCATAAG+TGG | 0.453458 | 1.4:+11284343 | MS.gene56089:CDS |
| GACGTGTATGTTATTAAAGA+TGG | 0.457125 | 1.4:-11282768 | None:intergenic |
| ATATTGTATGTCTGAAGATC+GGG | 0.460724 | 1.4:-11283086 | None:intergenic |
| CATGTCGCCTAGCAGTTCTT+CGG | 0.468861 | 1.4:-11284290 | None:intergenic |
| GCTTATAGTATTCTTGCTAA+AGG | 0.470019 | 1.4:+11284238 | MS.gene56089:CDS |
| ATTTATCCTGGAATCCAGCT+TGG | 0.471416 | 1.4:-11284162 | None:intergenic |
| TACAGCAAGAATCAAATGAA+TGG | 0.474247 | 1.4:+11282573 | MS.gene56089:CDS |
| GTGCTGTATGTTACCACATC+TGG | 0.477843 | 1.4:-11284121 | None:intergenic |
| ATGAATGCATGGAGCCAAGC+TGG | 0.479651 | 1.4:+11284148 | MS.gene56089:CDS |
| TTATTCTGTAAAGGAACTGC+AGG | 0.482875 | 1.4:-11283361 | None:intergenic |
| CATATTGTATGTCTGAAGAT+CGG | 0.487927 | 1.4:-11283087 | None:intergenic |
| TTCTGCATATCCCCAAATAA+GGG | 0.489541 | 1.4:-11284458 | None:intergenic |
| TCAGTGGAACCTACAGATGA+TGG | 0.490448 | 1.4:-11284742 | None:intergenic |
| TTTACAAATGCAGAAAGTGC+AGG | 0.496912 | 1.4:-11282631 | None:intergenic |
| GCAAATGCAAACATGAAGAA+AGG | 0.497593 | 1.4:+11281485 | MS.gene56089:CDS |
| TAAATGCATTTGCTGAATCC+GGG | 0.499753 | 1.4:+11282901 | MS.gene56089:CDS |
| GTTCAGAAGATGAAAGAAAG+TGG | 0.501956 | 1.4:+11282948 | MS.gene56089:CDS |
| GTATAAGAATACTGGTGTGC+AGG | 0.502013 | 1.4:-11284950 | None:intergenic |
| CAGTTCCTCCCATCATCTGT+AGG | 0.503161 | 1.4:+11284733 | MS.gene56089:CDS |
| TACAAATGTCATAAGTGGAT+GGG | 0.505191 | 1.4:+11284348 | MS.gene56089:CDS |
| AAATCCTTCAACAAATCTAC+AGG | 0.515150 | 1.4:-11284869 | None:intergenic |
| ACTTTCAACACAATGGCAAT+CGG | 0.515246 | 1.4:+11283203 | MS.gene56089:CDS |
| GTAAATGGATATTATAAAGA+AGG | 0.516514 | 1.4:+11283323 | MS.gene56089:CDS |
| ATGTGTCATAAACGGTTTCA+AGG | 0.518111 | 1.4:+11284898 | MS.gene56089:CDS |
| TCACCAAATCAGCATCTCTT+GGG | 0.518430 | 1.4:-11284807 | None:intergenic |
| CTAGACCTTATGTTAACTGA+TGG | 0.523045 | 1.4:+11283053 | MS.gene56089:CDS |
| ATAATATCCATTTACGATGA+CGG | 0.528244 | 1.4:-11283315 | None:intergenic |
| TCAGGTAGCATTCCAGAAGC+AGG | 0.531248 | 1.4:-11283173 | None:intergenic |
| TAGCAACTTCATTGCTTCAC+CGG | 0.531950 | 1.4:-11283033 | None:intergenic |
| TATGGTATTATAGGCAAGTC+CGG | 0.532106 | 1.4:+11283014 | MS.gene56089:CDS |
| ATCAATTCAATAGATGAAGA+TGG | 0.535756 | 1.4:+11284643 | MS.gene56089:CDS |
| CAAACATGAAGAAAGGAAAA+GGG | 0.539865 | 1.4:+11281492 | MS.gene56089:CDS |
| TTACAAATGTCATAAGTGGA+TGG | 0.541006 | 1.4:+11284347 | MS.gene56089:CDS |
| AAAATCACATTAGCTGCTTG+TGG | 0.541228 | 1.4:-11282717 | None:intergenic |
| CTAGGCGACATGATTGAGTC+CGG | 0.545308 | 1.4:+11284301 | MS.gene56089:CDS |
| ATGGGGCAGTTCTGGCAGAA+TGG | 0.547138 | 1.4:+11284366 | MS.gene56089:CDS |
| TTCTTCCACTTGCGAGACAA+TGG | 0.549101 | 1.4:-11282838 | None:intergenic |
| AACAACATTTGGGCGGACAC+CGG | 0.552181 | 1.4:-11284320 | None:intergenic |
| TTGAATATTCTGATTGTATG+CGG | 0.556994 | 1.4:+11282690 | MS.gene56089:CDS |
| ACATTCCATTGTCTCGCAAG+TGG | 0.565179 | 1.4:+11282833 | MS.gene56089:CDS |
| CTGCTTAAAGGAGCAATATG+TGG | 0.566541 | 1.4:-11284703 | None:intergenic |
| ACAAATGTCATAAGTGGATG+GGG | 0.569136 | 1.4:+11284349 | MS.gene56089:CDS |
| TGACAAGATGTGTGAATTAG+GGG | 0.574636 | 1.4:+11284408 | MS.gene56089:CDS |
| AAACCGTTTATGACACATGA+CGG | 0.574790 | 1.4:-11284893 | None:intergenic |
| TAAAGGTTATGTGAGATCAA+TGG | 0.576121 | 1.4:+11284255 | MS.gene56089:CDS |
| CGGGGAACATGTCTGAGGCA+TGG | 0.577733 | 1.4:+11283132 | MS.gene56089:CDS |
| TTGCTATAAGTGCCAGTGGA+AGG | 0.579974 | 1.4:-11282978 | None:intergenic |
| TTCTGTAACTTTCAACACAA+TGG | 0.583606 | 1.4:+11283196 | MS.gene56089:CDS |
| TTTACAGAATAAAGGATTTG+GGG | 0.584812 | 1.4:+11283372 | MS.gene56089:CDS |
| GGATAGGGATGGTGTTGATG+AGG | 0.591346 | 1.4:+11283451 | MS.gene56089:CDS |
| ATTTGCTGAATCCGGGAACA+TGG | 0.592126 | 1.4:+11282908 | MS.gene56089:CDS |
| ATTTCAAATCCAACCAGATG+TGG | 0.596894 | 1.4:+11284108 | MS.gene56089:CDS |
| TAAATATAACAACATTTGGG+CGG | 0.598097 | 1.4:-11284327 | None:intergenic |
| ATGCAGAAGCAAATCAGCCA+TGG | 0.600001 | 1.4:+11284473 | MS.gene56089:CDS |
| CAGTGGAACCTACAGATGAT+GGG | 0.601229 | 1.4:-11284741 | None:intergenic |
| ATCAAATGAATGGAATTGCG+AGG | 0.603175 | 1.4:+11282583 | MS.gene56089:CDS |
| TCAAATGAATGGAATTGCGA+GGG | 0.604019 | 1.4:+11282584 | MS.gene56089:CDS |
| GTGGATAGGATGGATAGGGA+TGG | 0.604961 | 1.4:+11283440 | MS.gene56089:CDS |
| GAGAAAGCCGAAGAACTGCT+AGG | 0.613483 | 1.4:+11284283 | MS.gene56089:CDS |
| AGATTTGAAGCACTTCTGCA+TGG | 0.613674 | 1.4:-11282808 | None:intergenic |
| CAAGTTGCTATAAGTGCCAG+TGG | 0.614123 | 1.4:-11282982 | None:intergenic |
| ACAGCACTATAATGAATGCA+TGG | 0.630661 | 1.4:+11284137 | MS.gene56089:CDS |
| TGTATGTTACCACATCTGGT+TGG | 0.642758 | 1.4:-11284117 | None:intergenic |
| TATTCTGTAAAGGAACTGCA+GGG | 0.643604 | 1.4:-11283360 | None:intergenic |
| AGAAATGCTCCAATTAATGG+AGG | 0.646727 | 1.4:+11284504 | MS.gene56089:CDS |
| ACATTAAACACAACAAGATG+AGG | 0.647963 | 1.4:-11283401 | None:intergenic |
| TGGGAGCTAGAAGAAATAGT+CGG | 0.649683 | 1.4:+11284782 | MS.gene56089:CDS |
| AGTGGATTCAGACCTTCCAC+TGG | 0.656021 | 1.4:+11282966 | MS.gene56089:CDS |
| GTATTTCAAAAGCCAAACAA+AGG | 0.667275 | 1.4:+11284620 | MS.gene56089:CDS |
| GTGTGCAGGAATTTGCAAGT+TGG | 0.671748 | 1.4:-11284936 | None:intergenic |
| TCAAAGCATTGTGTCAATCG+GGG | 0.673762 | 1.4:+11283114 | MS.gene56089:CDS |
| TCAATCGGGGAACATGTCTG+AGG | 0.681423 | 1.4:+11283127 | MS.gene56089:CDS |
| TCTTAATAGTGAAACTGCTG+AGG | 0.692432 | 1.4:+11283232 | MS.gene56089:CDS |
| TGGAACCTACAGATGATGGG+AGG | 0.718688 | 1.4:-11284738 | None:intergenic |
| AAACGGTTTCAAGGTCAGCG+TGG | 0.723721 | 1.4:+11284907 | MS.gene56089:CDS |
| ATTTCAACTAGTAACTGACA+AGG | 0.727714 | 1.4:+11281517 | MS.gene56089:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATTTTCTAAACATTTT+AGG | + | chr1.4:11282232-11282251 | MS.gene56089:intron | 10.0% |
| !! | TTGTAAATATAACAACATTT+GGG | - | chr1.4:11284333-11284352 | None:intergenic | 15.0% |
| !! | TTTGTAAATATAACAACATT+TGG | - | chr1.4:11284334-11284353 | None:intergenic | 15.0% |
| !! | ATAAAAGGTTATGGTATTAT+AGG | + | chr1.4:11283005-11283024 | MS.gene56089:CDS | 20.0% |
| !! | ATAATAATATGAATGTCAAG+AGG | - | chr1.4:11283615-11283634 | None:intergenic | 20.0% |
| !! | ATATTTACAAATGTCATAAG+TGG | + | chr1.4:11284343-11284362 | MS.gene56089:CDS | 20.0% |
| !! | GTAAATGGATATTATAAAGA+AGG | + | chr1.4:11283323-11283342 | MS.gene56089:CDS | 20.0% |
| !! | GTTTAACAAGAAAAAAGTTT+AGG | - | chr1.4:11283493-11283512 | None:intergenic | 20.0% |
| !! | TGATATATGATAGAACATTA+TGG | + | chr1.4:11282042-11282061 | MS.gene56089:intron | 20.0% |
| !! | TTATAAAGAAGGTCAAATTA+AGG | + | chr1.4:11283334-11283353 | MS.gene56089:CDS | 20.0% |
| !!! | AGATTTTTTCATCATATATG+AGG | - | chr1.4:11282303-11282322 | None:intergenic | 20.0% |
| !!! | ATCAAAAAAAGCACATTTTA+AGG | - | chr1.4:11282426-11282445 | None:intergenic | 20.0% |
| !!! | TCATTTTTTTAACCATCTAA+AGG | + | chr1.4:11283814-11283833 | MS.gene56089:intron | 20.0% |
| ! | AAATGACATTATTTGAGAGT+TGG | + | chr1.4:11281815-11281834 | MS.gene56089:intron | 25.0% |
| ! | AACATGAAGATTATGTAGTA+AGG | + | chr1.4:11281910-11281929 | MS.gene56089:intron | 25.0% |
| ! | AATGACATTATTTGAGAGTT+GGG | + | chr1.4:11281816-11281835 | MS.gene56089:intron | 25.0% |
| ! | AATTTCCATCAGTTAACATA+AGG | - | chr1.4:11283061-11283080 | None:intergenic | 25.0% |
| ! | ACTTATAGCAACTTGATAAA+AGG | + | chr1.4:11282990-11283009 | MS.gene56089:CDS | 25.0% |
| ! | ATAATATCCATTTACGATGA+CGG | - | chr1.4:11283318-11283337 | None:intergenic | 25.0% |
| ! | ATCAATTCAATAGATGAAGA+TGG | + | chr1.4:11284643-11284662 | MS.gene56089:CDS | 25.0% |
| ! | ATTATTTAACGTCCTTTAGA+TGG | - | chr1.4:11283829-11283848 | None:intergenic | 25.0% |
| ! | CAAGAGGTTATGAATTAAAA+AGG | - | chr1.4:11283599-11283618 | None:intergenic | 25.0% |
| ! | CTAAAGGACGTTAAATAATT+TGG | + | chr1.4:11283830-11283849 | MS.gene56089:intron | 25.0% |
| ! | CTTTACAGAATAAAGGATTT+GGG | + | chr1.4:11283371-11283390 | MS.gene56089:CDS | 25.0% |
| ! | TAAAACAAATGGAAACATCA+GGG | - | chr1.4:11282388-11282407 | None:intergenic | 25.0% |
| ! | TAAAACTAGCAATGTTGTAT+CGG | + | chr1.4:11281688-11281707 | MS.gene56089:intron | 25.0% |
| ! | TAAATATAACAACATTTGGG+CGG | - | chr1.4:11284330-11284349 | None:intergenic | 25.0% |
| ! | TAAGAAGATTCAAAAACCAA+AGG | - | chr1.4:11283871-11283890 | None:intergenic | 25.0% |
| ! | TATACGAGAAACTATTAAGA+AGG | + | chr1.4:11281989-11282008 | MS.gene56089:intron | 25.0% |
| ! | TATATGATAGAACATTATGG+CGG | + | chr1.4:11282045-11282064 | MS.gene56089:intron | 25.0% |
| ! | TATGAAAATCCTCCATTAAT+TGG | - | chr1.4:11284516-11284535 | None:intergenic | 25.0% |
| ! | TATTGAATTGATCCTTTGTT+TGG | - | chr1.4:11284635-11284654 | None:intergenic | 25.0% |
| ! | TTAAAACAAATGGAAACATC+AGG | - | chr1.4:11282389-11282408 | None:intergenic | 25.0% |
| ! | TTCTTAATAGTTTCTCGTAT+AGG | - | chr1.4:11281990-11282009 | None:intergenic | 25.0% |
| ! | TTGAATATTCTGATTGTATG+CGG | + | chr1.4:11282690-11282709 | MS.gene56089:CDS | 25.0% |
| ! | TTTACAGAATAAAGGATTTG+GGG | + | chr1.4:11283372-11283391 | MS.gene56089:CDS | 25.0% |
| !! | TCAAAAAGTTGATTGAAGAA+GGG | + | chr1.4:11282739-11282758 | MS.gene56089:CDS | 25.0% |
| !! | TCTAAACATTTTAGGCTTTT+GGG | + | chr1.4:11282240-11282259 | MS.gene56089:intron | 25.0% |
| !! | TTCAAAAAGTTGATTGAAGA+AGG | + | chr1.4:11282738-11282757 | MS.gene56089:CDS | 25.0% |
| !! | TTCTAAACATTTTAGGCTTT+TGG | + | chr1.4:11282239-11282258 | MS.gene56089:intron | 25.0% |
| !!! | AAAAGCACATTTTAAGGTTT+AGG | - | chr1.4:11282420-11282439 | None:intergenic | 25.0% |
| !!! | ACATTGCTAGTTTTAATGAA+AGG | - | chr1.4:11281683-11281702 | None:intergenic | 25.0% |
| !!! | AGTTTTAGAATCATGTGATT+CGG | + | chr1.4:11283787-11283806 | MS.gene56089:intron | 25.0% |
| !!! | GAGAGGTTTTAATTCTAAAT+TGG | + | chr1.4:11281616-11281635 | MS.gene56089:intron | 25.0% |
| !!! | GCATATTCAATCTATTTTAG+TGG | + | chr1.4:11282176-11282195 | MS.gene56089:intron | 25.0% |
| !!! | GTATTGATTGTAGTTTTAGA+TGG | + | chr1.4:11283551-11283570 | MS.gene56089:intron | 25.0% |
| !!! | TAATACTTTTGGCTCAAAAA+GGG | + | chr1.4:11283941-11283960 | MS.gene56089:intron | 25.0% |
| !!! | TTTTCTTGTTAAACTTGCTT+TGG | + | chr1.4:11283499-11283518 | MS.gene56089:intron | 25.0% |
| AAACTATTAAGAAGGATCTC+GGG | + | chr1.4:11281997-11282016 | MS.gene56089:intron | 30.0% | |
| AAATCCTTCAACAAATCTAC+AGG | - | chr1.4:11284872-11284891 | None:intergenic | 30.0% | |
| AACTACAATCAATACTACGA+TGG | - | chr1.4:11283546-11283565 | None:intergenic | 30.0% | |
| ACATTAAACACAACAAGATG+AGG | - | chr1.4:11283404-11283423 | None:intergenic | 30.0% | |
| AGAAGAAATGCTCCAATTAA+TGG | + | chr1.4:11284501-11284520 | MS.gene56089:CDS | 30.0% | |
| AGCAACTTGATAAAAGGTTA+TGG | + | chr1.4:11282996-11283015 | MS.gene56089:CDS | 30.0% | |
| ATATTGTATGTCTGAAGATC+GGG | - | chr1.4:11283089-11283108 | None:intergenic | 30.0% | |
| ATGACATTATTTGAGAGTTG+GGG | + | chr1.4:11281817-11281836 | MS.gene56089:intron | 30.0% | |
| ATGTATAAAAAGCTTGCAAG+TGG | - | chr1.4:11283706-11283725 | None:intergenic | 30.0% | |
| ATTGAATATGCAGACTAAGT+GGG | - | chr1.4:11282167-11282186 | None:intergenic | 30.0% | |
| ATTTCAACTAGTAACTGACA+AGG | + | chr1.4:11281517-11281536 | MS.gene56089:CDS | 30.0% | |
| CAAACATGAAGAAAGGAAAA+GGG | + | chr1.4:11281492-11281511 | MS.gene56089:CDS | 30.0% | |
| CAAGAAAAAAGTTTAGGCAT+AGG | - | chr1.4:11283487-11283506 | None:intergenic | 30.0% | |
| CATATTGTATGTCTGAAGAT+CGG | - | chr1.4:11283090-11283109 | None:intergenic | 30.0% | |
| CCAAATCCTTTATTCTGTAA+AGG | - | chr1.4:11283373-11283392 | None:intergenic | 30.0% | |
| CCTTTACAGAATAAAGGATT+TGG | + | chr1.4:11283370-11283389 | MS.gene56089:CDS | 30.0% | |
| GAAACTATTAAGAAGGATCT+CGG | + | chr1.4:11281996-11282015 | MS.gene56089:intron | 30.0% | |
| GACGTGTATGTTATTAAAGA+TGG | - | chr1.4:11282771-11282790 | None:intergenic | 30.0% | |
| GCTTATAGTATTCTTGCTAA+AGG | + | chr1.4:11284238-11284257 | MS.gene56089:CDS | 30.0% | |
| GGTTCAGTTGTTAAAACAAA+TGG | - | chr1.4:11282399-11282418 | None:intergenic | 30.0% | |
| GTATTTCAAAAGCCAAACAA+AGG | + | chr1.4:11284620-11284639 | MS.gene56089:CDS | 30.0% | |
| GTGAAAATCCTTCTGTATAT+AGG | + | chr1.4:11284066-11284085 | MS.gene56089:intron | 30.0% | |
| GTGTTTAATGTCCTGATTAA+TGG | + | chr1.4:11283413-11283432 | MS.gene56089:CDS | 30.0% | |
| TAAAGGTTATGTGAGATCAA+TGG | + | chr1.4:11284255-11284274 | MS.gene56089:CDS | 30.0% | |
| TACAAATGTCATAAGTGGAT+GGG | + | chr1.4:11284348-11284367 | MS.gene56089:CDS | 30.0% | |
| TACAGCAAGAATCAAATGAA+TGG | + | chr1.4:11282573-11282592 | MS.gene56089:CDS | 30.0% | |
| TATCCACAAAACCATTAATC+AGG | - | chr1.4:11283427-11283446 | None:intergenic | 30.0% | |
| TCTCAAAACCTATATACAGA+AGG | - | chr1.4:11284077-11284096 | None:intergenic | 30.0% | |
| TGATTTGACTAATCTTCATC+TGG | - | chr1.4:11281944-11281963 | None:intergenic | 30.0% | |
| TGGATCTGTTAATGAACAAA+AGG | + | chr1.4:11283519-11283538 | MS.gene56089:intron | 30.0% | |
| TGTTCATGTTCTTGATTAGT+TGG | + | chr1.4:11281583-11281602 | MS.gene56089:intron | 30.0% | |
| TTACAAATGTCATAAGTGGA+TGG | + | chr1.4:11284347-11284366 | MS.gene56089:CDS | 30.0% | |
| TTCTGTAACTTTCAACACAA+TGG | + | chr1.4:11283196-11283215 | MS.gene56089:CDS | 30.0% | |
| TTGACAAGATGTGTGAATTA+GGG | + | chr1.4:11284407-11284426 | MS.gene56089:CDS | 30.0% | |
| TTTGACAAGATGTGTGAATT+AGG | + | chr1.4:11284406-11284425 | MS.gene56089:CDS | 30.0% | |
| ! | AAATTTGCTTGCATTTATCC+TGG | - | chr1.4:11284177-11284196 | None:intergenic | 30.0% |
| ! | ATAAATGCATTTGCTGAATC+CGG | + | chr1.4:11282900-11282919 | MS.gene56089:CDS | 30.0% |
| ! | ATGCAGTGTTCTAATACTTT+TGG | + | chr1.4:11283930-11283949 | MS.gene56089:intron | 30.0% |
| ! | CTTTTGGTAAATTCTCTCTA+AGG | - | chr1.4:11284683-11284702 | None:intergenic | 30.0% |
| ! | GATAAAAAAAGCACAGCTTT+GGG | + | chr1.4:11284763-11284782 | MS.gene56089:CDS | 30.0% |
| ! | GATTTTCACCATTAGTTACA+AGG | - | chr1.4:11284055-11284074 | None:intergenic | 30.0% |
| ! | TGATAAAAAAAGCACAGCTT+TGG | + | chr1.4:11284762-11284781 | MS.gene56089:CDS | 30.0% |
| !! | ATTTAGTTCTTTGTAGCCTA+TGG | + | chr1.4:11282332-11282351 | MS.gene56089:intron | 30.0% |
| !! | GATGATTTGGCTTTAGAAAA+TGG | + | chr1.4:11282262-11282281 | MS.gene56089:intron | 30.0% |
| !! | GTTTTAGATGGATTCAACAT+AGG | + | chr1.4:11283563-11283582 | MS.gene56089:intron | 30.0% |
| !!! | CTAATACTTTTGGCTCAAAA+AGG | + | chr1.4:11283940-11283959 | MS.gene56089:intron | 30.0% |
| !!! | GTTTCTCGTATAGGTTTTTT+AGG | - | chr1.4:11281981-11282000 | None:intergenic | 30.0% |
| !!! | TGATTAATGGTTTTGTGGAT+AGG | + | chr1.4:11283426-11283445 | MS.gene56089:CDS | 30.0% |
| !!! | TTTTGAAACAAGCAAGAATG+TGG | - | chr1.4:11284554-11284573 | None:intergenic | 30.0% |
| AAAATCACATTAGCTGCTTG+TGG | - | chr1.4:11282720-11282739 | None:intergenic | 35.0% | |
| AAACCGTTTATGACACATGA+CGG | - | chr1.4:11284896-11284915 | None:intergenic | 35.0% | |
| AAAGCGACAGTGAAAGAAAA+TGG | + | chr1.4:11283655-11283674 | MS.gene56089:intron | 35.0% | |
| AACTGTAAGAGACTGCTTAA+AGG | - | chr1.4:11284718-11284737 | None:intergenic | 35.0% | |
| ACAAATGTCATAAGTGGATG+GGG | + | chr1.4:11284349-11284368 | MS.gene56089:CDS | 35.0% | |
| ACAGCACTATAATGAATGCA+TGG | + | chr1.4:11284137-11284156 | MS.gene56089:CDS | 35.0% | |
| ACGGTAAAAGTTCTCTCATT+TGG | - | chr1.4:11283299-11283318 | None:intergenic | 35.0% | |
| ACTTTCAACACAATGGCAAT+CGG | + | chr1.4:11283203-11283222 | MS.gene56089:CDS | 35.0% | |
| AGAAATGCTCCAATTAATGG+AGG | + | chr1.4:11284504-11284523 | MS.gene56089:CDS | 35.0% | |
| AGCATTTCTTCTGATTTCCA+TGG | - | chr1.4:11284493-11284512 | None:intergenic | 35.0% | |
| ATACTATAAGCATGCACATC+TGG | - | chr1.4:11284229-11284248 | None:intergenic | 35.0% | |
| ATCAAATGAATGGAATTGCG+AGG | + | chr1.4:11282583-11282602 | MS.gene56089:CDS | 35.0% | |
| ATGTGTCATAAACGGTTTCA+AGG | + | chr1.4:11284898-11284917 | MS.gene56089:CDS | 35.0% | |
| ATTTCAAATCCAACCAGATG+TGG | + | chr1.4:11284108-11284127 | MS.gene56089:CDS | 35.0% | |
| CTAGACCTTATGTTAACTGA+TGG | + | chr1.4:11283053-11283072 | MS.gene56089:CDS | 35.0% | |
| CTTTGGCATGTAATTTGACA+GGG | + | chr1.4:11282540-11282559 | MS.gene56089:intron | 35.0% | |
| GATGGTAGAAACTAGAAACT+CGG | + | chr1.4:11281859-11281878 | MS.gene56089:intron | 35.0% | |
| GATTGAATATGCAGACTAAG+TGG | - | chr1.4:11282168-11282187 | None:intergenic | 35.0% | |
| GATTTATTGCTCAATGCCTT+TGG | + | chr1.4:11283852-11283871 | MS.gene56089:intron | 35.0% | |
| GCAAACATGAAGAAAGGAAA+AGG | + | chr1.4:11281491-11281510 | MS.gene56089:CDS | 35.0% | |
| GCAAATGCAAACATGAAGAA+AGG | + | chr1.4:11281485-11281504 | MS.gene56089:CDS | 35.0% | |
| GCAGTTCCTTTACAGAATAA+AGG | + | chr1.4:11283364-11283383 | MS.gene56089:CDS | 35.0% | |
| GCTTAAAGCTGAATATCCTT+TGG | + | chr1.4:11282523-11282542 | MS.gene56089:intron | 35.0% | |
| GTGTTGAAAGTTACAGAATC+AGG | - | chr1.4:11283194-11283213 | None:intergenic | 35.0% | |
| GTTCAGAAGATGAAAGAAAG+TGG | + | chr1.4:11282948-11282967 | MS.gene56089:CDS | 35.0% | |
| TAGTTGGATATGATTCTGAG+AGG | + | chr1.4:11281599-11281618 | MS.gene56089:intron | 35.0% | |
| TATGGTATTATAGGCAAGTC+CGG | + | chr1.4:11283014-11283033 | MS.gene56089:CDS | 35.0% | |
| TATTCTGTAAAGGAACTGCA+GGG | - | chr1.4:11283363-11283382 | None:intergenic | 35.0% | |
| TCAAATGAATGGAATTGCGA+GGG | + | chr1.4:11282584-11282603 | MS.gene56089:CDS | 35.0% | |
| TCTTAATAGTGAAACTGCTG+AGG | + | chr1.4:11283232-11283251 | MS.gene56089:CDS | 35.0% | |
| TCTTGCTTGTTTCAAAAGCT+TGG | + | chr1.4:11284557-11284576 | MS.gene56089:CDS | 35.0% | |
| TGACAAGATGTGTGAATTAG+GGG | + | chr1.4:11284408-11284427 | MS.gene56089:CDS | 35.0% | |
| TGGATTCAACATAGGATCAA+TGG | + | chr1.4:11283571-11283590 | MS.gene56089:intron | 35.0% | |
| TTAGAACACTGCATGACATT+TGG | - | chr1.4:11283924-11283943 | None:intergenic | 35.0% | |
| TTATTCTGTAAAGGAACTGC+AGG | - | chr1.4:11283364-11283383 | None:intergenic | 35.0% | |
| TTCGACAACATGTTGAAATC+TGG | + | chr1.4:11284196-11284215 | MS.gene56089:CDS | 35.0% | |
| TTCTGCATATCCCCAAATAA+GGG | - | chr1.4:11284461-11284480 | None:intergenic | 35.0% | |
| TTGAATATGCAGACTAAGTG+GGG | - | chr1.4:11282166-11282185 | None:intergenic | 35.0% | |
| TTGTGACAAGACTAAGAAGA+TGG | - | chr1.4:11283751-11283770 | None:intergenic | 35.0% | |
| TTTCACCATTAGTTACAAGG+TGG | - | chr1.4:11284052-11284071 | None:intergenic | 35.0% | |
| TTTCCGTCATGTGTCATAAA+CGG | + | chr1.4:11284890-11284909 | MS.gene56089:CDS | 35.0% | |
| TTTGGCATGTAATTTGACAG+GGG | + | chr1.4:11282541-11282560 | MS.gene56089:intron | 35.0% | |
| ! | ACTTTTACCGTCATCGTAAA+TGG | + | chr1.4:11283308-11283327 | MS.gene56089:CDS | 35.0% |
| ! | CACTACTTGCTGATAACAAT+TGG | + | chr1.4:11282359-11282378 | MS.gene56089:intron | 35.0% |
| ! | TAAATGCATTTGCTGAATCC+GGG | + | chr1.4:11282901-11282920 | MS.gene56089:CDS | 35.0% |
| ! | TCCAAATTTGAGGACTTTTG+AGG | + | chr1.4:11284435-11284454 | MS.gene56089:CDS | 35.0% |
| ! | TCTACCATCTTTTCTACGAT+AGG | - | chr1.4:11281848-11281867 | None:intergenic | 35.0% |
| ! | TTTACAAATGCAGAAAGTGC+AGG | - | chr1.4:11282634-11282653 | None:intergenic | 35.0% |
| ! | TTTTGTGGATAGGATGGATA+GGG | + | chr1.4:11283436-11283455 | MS.gene56089:CDS | 35.0% |
| !! | ATTTTAGAGATGCAGAGGAA+AGG | + | chr1.4:11283266-11283285 | MS.gene56089:CDS | 35.0% |
| !! | CAATGATTTTAGAGATGCAG+AGG | + | chr1.4:11283261-11283280 | MS.gene56089:CDS | 35.0% |
| !! | TGTCAAAGCATTGTGTCAAT+CGG | + | chr1.4:11283112-11283131 | MS.gene56089:CDS | 35.0% |
| !! | TGTCCTGATTAATGGTTTTG+TGG | + | chr1.4:11283421-11283440 | MS.gene56089:CDS | 35.0% |
| !!! | AGCTGTGCTTTTTTTATCAG+TGG | - | chr1.4:11284761-11284780 | None:intergenic | 35.0% |
| !!! | TAATGGTTTTGTGGATAGGA+TGG | + | chr1.4:11283430-11283449 | MS.gene56089:CDS | 35.0% |
| !!! | TTTAGGCTTTTGGGATGATT+TGG | + | chr1.4:11282249-11282268 | MS.gene56089:intron | 35.0% |
| AAACTCGGCTTATGTGGTTT+AGG | + | chr1.4:11281874-11281893 | MS.gene56089:intron | 40.0% | |
| AACTAGAAACTCGGCTTATG+TGG | + | chr1.4:11281868-11281887 | MS.gene56089:intron | 40.0% | |
| AAGATGTTACGTTGGATGTG+TGG | + | chr1.4:11281768-11281787 | MS.gene56089:intron | 40.0% | |
| ACTAGCAATGTTGTATCGGA+TGG | + | chr1.4:11281692-11281711 | MS.gene56089:intron | 40.0% | |
| AGCAAGAATGTGGACTTCTT+AGG | - | chr1.4:11284544-11284563 | None:intergenic | 40.0% | |
| AGCACCTATCGTAGAAAAGA+TGG | + | chr1.4:11281841-11281860 | MS.gene56089:intron | 40.0% | |
| AGTCAAATCACTAGAGACGA+AGG | + | chr1.4:11281954-11281973 | MS.gene56089:intron | 40.0% | |
| ATCTAGTCTCCTTGAAGTTC+TGG | + | chr1.4:11282487-11282506 | MS.gene56089:intron | 40.0% | |
| ATTGCGAGGGATGAAAATTC+AGG | + | chr1.4:11282597-11282616 | MS.gene56089:CDS | 40.0% | |
| ATTTATCCTGGAATCCAGCT+TGG | - | chr1.4:11284165-11284184 | None:intergenic | 40.0% | |
| CAAACTTTCCCAGAACTTCA+AGG | - | chr1.4:11282499-11282518 | None:intergenic | 40.0% | |
| CAGAGATGAAGATGTTACGT+TGG | + | chr1.4:11281760-11281779 | MS.gene56089:intron | 40.0% | |
| CAGCAAGTAGTGATTTCCAT+AGG | - | chr1.4:11282351-11282370 | None:intergenic | 40.0% | |
| CCTGTCAAATTACATGCCAA+AGG | - | chr1.4:11282542-11282561 | None:intergenic | 40.0% | |
| CCTTTGGCATGTAATTTGAC+AGG | + | chr1.4:11282539-11282558 | MS.gene56089:intron | 40.0% | |
| CTGCTTAAAGGAGCAATATG+TGG | - | chr1.4:11284706-11284725 | None:intergenic | 40.0% | |
| CTTCTGCATATCCCCAAATA+AGG | - | chr1.4:11284462-11284481 | None:intergenic | 40.0% | |
| GCAAGAATGTGGACTTCTTA+GGG | - | chr1.4:11284543-11284562 | None:intergenic | 40.0% | |
| GCATTCCACCTTGTAACTAA+TGG | + | chr1.4:11284044-11284063 | MS.gene56089:intron | 40.0% | |
| GCCTCAAAAGTCCTCAAATT+TGG | - | chr1.4:11284439-11284458 | None:intergenic | 40.0% | |
| GCTTGCAAGTGGTAAATTCT+AGG | - | chr1.4:11283695-11283714 | None:intergenic | 40.0% | |
| GTATAAGAATACTGGTGTGC+AGG | - | chr1.4:11284953-11284972 | None:intergenic | 40.0% | |
| TAGCAACTTCATTGCTTCAC+CGG | - | chr1.4:11283036-11283055 | None:intergenic | 40.0% | |
| TAGGGGTTTCTCCAAATTTG+AGG | + | chr1.4:11284425-11284444 | MS.gene56089:CDS | 40.0% | |
| TCACCAAATCAGCATCTCTT+GGG | - | chr1.4:11284810-11284829 | None:intergenic | 40.0% | |
| TCTAGTCTCCTTGAAGTTCT+GGG | + | chr1.4:11282488-11282507 | MS.gene56089:intron | 40.0% | |
| TGGGAGCTAGAAGAAATAGT+CGG | + | chr1.4:11284782-11284801 | MS.gene56089:CDS | 40.0% | |
| TGTATGTTACCACATCTGGT+TGG | - | chr1.4:11284120-11284139 | None:intergenic | 40.0% | |
| ! | AAGGAGCAATATGTGGCTTT+TGG | - | chr1.4:11284699-11284718 | None:intergenic | 40.0% |
| ! | AGATTTGAAGCACTTCTGCA+TGG | - | chr1.4:11282811-11282830 | None:intergenic | 40.0% |
| ! | CGGGATTAATGAGTTGGATA+GGG | + | chr1.4:11282016-11282035 | MS.gene56089:intron | 40.0% |
| ! | GTTTTGTGGATAGGATGGAT+AGG | + | chr1.4:11283435-11283454 | MS.gene56089:CDS | 40.0% |
| ! | TCGGGATTAATGAGTTGGAT+AGG | + | chr1.4:11282015-11282034 | MS.gene56089:intron | 40.0% |
| ! | TTTTGCATCTTCCATGTTCC+CGG | - | chr1.4:11282922-11282941 | None:intergenic | 40.0% |
| !! | CGTACCTGTAGATTTGTTGA+AGG | + | chr1.4:11284865-11284884 | MS.gene56089:CDS | 40.0% |
| !! | GTCAAAGCATTGTGTCAATC+GGG | + | chr1.4:11283113-11283132 | MS.gene56089:CDS | 40.0% |
| !! | TCAAAGCATTGTGTCAATCG+GGG | + | chr1.4:11283114-11283133 | MS.gene56089:CDS | 40.0% |
| !!! | ACTTTTGAGGCCCTTATTTG+GGG | + | chr1.4:11284448-11284467 | MS.gene56089:CDS | 40.0% |
| !!! | GACTTTTGAGGCCCTTATTT+GGG | + | chr1.4:11284447-11284466 | MS.gene56089:CDS | 40.0% |
| AAATCAAGTCACCGCTCCTT+TGG | + | chr1.4:11283969-11283988 | MS.gene56089:intron | 45.0% | |
| ACATTCCATTGTCTCGCAAG+TGG | + | chr1.4:11282833-11282852 | MS.gene56089:CDS | 45.0% | |
| AGAGATGCAGAGGAAAGGTT+TGG | + | chr1.4:11283271-11283290 | MS.gene56089:CDS | 45.0% | |
| AGTGGGGTCTGCAATGTTAA+AGG | - | chr1.4:11282150-11282169 | None:intergenic | 45.0% | |
| ATGCAGAAGCAAATCAGCCA+TGG | + | chr1.4:11284473-11284492 | MS.gene56089:CDS | 45.0% | |
| CAAGTTGCTATAAGTGCCAG+TGG | - | chr1.4:11282985-11283004 | None:intergenic | 45.0% | |
| CAGTGGAACCTACAGATGAT+GGG | - | chr1.4:11284744-11284763 | None:intergenic | 45.0% | |
| GGATCTCGGGATTAATGAGT+TGG | + | chr1.4:11282010-11282029 | MS.gene56089:intron | 45.0% | |
| GTCACCAAATCAGCATCTCT+TGG | - | chr1.4:11284811-11284830 | None:intergenic | 45.0% | |
| GTGCTGTATGTTACCACATC+TGG | - | chr1.4:11284124-11284143 | None:intergenic | 45.0% | |
| GTGTGCAGGAATTTGCAAGT+TGG | - | chr1.4:11284939-11284958 | None:intergenic | 45.0% | |
| TCAAAAGCTTGGCACTTTGC+TGG | + | chr1.4:11284568-11284587 | MS.gene56089:CDS | 45.0% | |
| TCAGTGGAACCTACAGATGA+TGG | - | chr1.4:11284745-11284764 | None:intergenic | 45.0% | |
| TGTTGTATCGGATGGAGTGT+TGG | + | chr1.4:11281700-11281719 | MS.gene56089:intron | 45.0% | |
| TTCTTCCACTTGCGAGACAA+TGG | - | chr1.4:11282841-11282860 | None:intergenic | 45.0% | |
| TTGCTATAAGTGCCAGTGGA+AGG | - | chr1.4:11282981-11283000 | None:intergenic | 45.0% | |
| ! | ATTTGCTGAATCCGGGAACA+TGG | + | chr1.4:11282908-11282927 | MS.gene56089:CDS | 45.0% |
| ! | GTTGTATCGGATGGAGTGTT+GGG | + | chr1.4:11281701-11281720 | MS.gene56089:intron | 45.0% |
| !!! | CGCTTATTTTACTCCCGTGT+TGG | - | chr1.4:11281737-11281756 | None:intergenic | 45.0% |
| !!! | GGACTTTTGAGGCCCTTATT+TGG | + | chr1.4:11284446-11284465 | MS.gene56089:CDS | 45.0% |
| AAACGGTTTCAAGGTCAGCG+TGG | + | chr1.4:11284907-11284926 | MS.gene56089:CDS | 50.0% | |
| AACAACATTTGGGCGGACAC+CGG | - | chr1.4:11284323-11284342 | None:intergenic | 50.0% | |
| ACGCCTTATCCCAGAAAGTG+GGG | - | chr1.4:11282091-11282110 | None:intergenic | 50.0% | |
| ATAAGTGGATGGGGCAGTTC+TGG | + | chr1.4:11284358-11284377 | MS.gene56089:CDS | 50.0% | |
| ATGAATGCATGGAGCCAAGC+TGG | + | chr1.4:11284148-11284167 | MS.gene56089:CDS | 50.0% | |
| ATGTAGCCAACCCCACTTTC+TGG | + | chr1.4:11282078-11282097 | MS.gene56089:intron | 50.0% | |
| CACGCCTTATCCCAGAAAGT+GGG | - | chr1.4:11282092-11282111 | None:intergenic | 50.0% | |
| CACTATGCCGAGCAAACCAA+AGG | - | chr1.4:11283988-11284007 | None:intergenic | 50.0% | |
| CAGTTCCTCCCATCATCTGT+AGG | + | chr1.4:11284733-11284752 | MS.gene56089:CDS | 50.0% | |
| CATGTCGCCTAGCAGTTCTT+CGG | - | chr1.4:11284293-11284312 | None:intergenic | 50.0% | |
| CTAGGCGACATGATTGAGTC+CGG | + | chr1.4:11284301-11284320 | MS.gene56089:CDS | 50.0% | |
| CTTATCCCAGAAAGTGGGGT+TGG | - | chr1.4:11282087-11282106 | None:intergenic | 50.0% | |
| GAGAAAGCCGAAGAACTGCT+AGG | + | chr1.4:11284283-11284302 | MS.gene56089:CDS | 50.0% | |
| GTGGATAGGATGGATAGGGA+TGG | + | chr1.4:11283440-11283459 | MS.gene56089:CDS | 50.0% | |
| GTGTGTAAGATGCCTGCTTC+TGG | + | chr1.4:11283161-11283180 | MS.gene56089:CDS | 50.0% | |
| TCAATCGGGGAACATGTCTG+AGG | + | chr1.4:11283127-11283146 | MS.gene56089:CDS | 50.0% | |
| TCAGGTAGCATTCCAGAAGC+AGG | - | chr1.4:11283176-11283195 | None:intergenic | 50.0% | |
| TGTAGCCAACCCCACTTTCT+GGG | + | chr1.4:11282079-11282098 | MS.gene56089:intron | 50.0% | |
| ! | AGTGGATTCAGACCTTCCAC+TGG | + | chr1.4:11282966-11282985 | MS.gene56089:CDS | 50.0% |
| ! | GCTCCCAAGAGATGCTGATT+TGG | + | chr1.4:11284804-11284823 | MS.gene56089:CDS | 50.0% |
| !! | AGAAAGTGGGGTTGGCTACA+TGG | - | chr1.4:11282079-11282098 | None:intergenic | 50.0% |
| !! | CAACCCCACTTTCTGGGATA+AGG | + | chr1.4:11282085-11282104 | MS.gene56089:intron | 50.0% |
| !! | GGATAGGGATGGTGTTGATG+AGG | + | chr1.4:11283451-11283470 | MS.gene56089:CDS | 50.0% |
| !! | TGGAACCTACAGATGATGGG+AGG | - | chr1.4:11284741-11284760 | None:intergenic | 50.0% |
| ATGGAGCCAAGCTGGATTCC+AGG | + | chr1.4:11284156-11284175 | MS.gene56089:CDS | 55.0% | |
| CCACGCCTTATCCCAGAAAG+TGG | - | chr1.4:11282093-11282112 | None:intergenic | 55.0% | |
| TGCCGAGCAAACCAAAGGAG+CGG | - | chr1.4:11283983-11284002 | None:intergenic | 55.0% | |
| TGGGCGGTAAAGAGCCAACA+CGG | + | chr1.4:11281720-11281739 | MS.gene56089:intron | 55.0% | |
| ! | ATGGGGCAGTTCTGGCAGAA+TGG | + | chr1.4:11284366-11284385 | MS.gene56089:CDS | 55.0% |
| !! | CACCGCTCCTTTGGTTTGCT+CGG | + | chr1.4:11283978-11283997 | MS.gene56089:intron | 55.0% |
| !! | CCACTTTCTGGGATAAGGCG+TGG | + | chr1.4:11282090-11282109 | MS.gene56089:intron | 55.0% |
| !! | GTATCGGATGGAGTGTTGGG+CGG | + | chr1.4:11281704-11281723 | MS.gene56089:intron | 55.0% |
| GGGCGGTAAAGAGCCAACAC+GGG | + | chr1.4:11281721-11281740 | MS.gene56089:intron | 60.0% | |
| ! | CGGGGAACATGTCTGAGGCA+TGG | + | chr1.4:11283132-11283151 | MS.gene56089:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 11281472 | 11284975 | 11281472 | ID=MS.gene56089 |
| chr1.4 | mRNA | 11281472 | 11284975 | 11281472 | ID=MS.gene56089.t1;Parent=MS.gene56089 |
| chr1.4 | exon | 11281472 | 11281538 | 11281472 | ID=MS.gene56089.t1.exon1;Parent=MS.gene56089.t1 |
| chr1.4 | CDS | 11281472 | 11281538 | 11281472 | ID=cds.MS.gene56089.t1;Parent=MS.gene56089.t1 |
| chr1.4 | exon | 11282561 | 11283472 | 11282561 | ID=MS.gene56089.t1.exon2;Parent=MS.gene56089.t1 |
| chr1.4 | CDS | 11282561 | 11283472 | 11282561 | ID=cds.MS.gene56089.t1;Parent=MS.gene56089.t1 |
| chr1.4 | exon | 11284088 | 11284975 | 11284088 | ID=MS.gene56089.t1.exon3;Parent=MS.gene56089.t1 |
| chr1.4 | CDS | 11284088 | 11284975 | 11284088 | ID=cds.MS.gene56089.t1;Parent=MS.gene56089.t1 |
| Gene Sequence |
| Protein sequence |
