AlfalfaGEDB | MS.gene56089

M. sativa cultivar XinJiangDaYe / MS.gene56089

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56089.t1	XP_003588537.2	81.8	620	113	0	1	620	16	635	8.40E-102	381.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56089.t1	Q8S9D1	60.4	53	21	0	47	99	307	359	4.6e-08	61.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56089.t1	G7I4C0	81.8	620	113	0	1	620	16	635	6.0e-102	381.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene56089	0.821894	3.17E-53	-1.69E-46
MS.gene049284	MS.gene56089	0.819173	1.33E-52	-1.69E-46
MS.gene049346	MS.gene56089	0.80583	1.10E-49	-1.69E-46
MS.gene049351	MS.gene56089	0.846529	2.05E-59	-1.69E-46
MS.gene049356	MS.gene56089	0.805152	1.53E-49	-1.69E-46
MS.gene049427	MS.gene56089	0.852597	4.16E-61	-1.69E-46
MS.gene049491	MS.gene56089	0.828826	7.25E-55	-1.69E-46
MS.gene049661	MS.gene56089	0.859879	3.05E-63	-1.69E-46
MS.gene049662	MS.gene56089	0.858429	8.29E-63	-1.69E-46
MS.gene049758	MS.gene56089	0.829063	6.35E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 123 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCACATTAGCTGCTTG+TGG	0.541228	1.4:-11282717	None:intergenic
AAACCGTTTATGACACATGA+CGG	0.574790	1.4:-11284893	None:intergenic
AAACGGTTTCAAGGTCAGCG+TGG	0.723721	1.4:+11284907	MS.gene56089:CDS
AAATCCTTCAACAAATCTAC+AGG	0.515150	1.4:-11284869	None:intergenic
AAATTTGCTTGCATTTATCC+TGG	0.431388	1.4:-11284174	None:intergenic
AACAACATTTGGGCGGACAC+CGG	0.552181	1.4:-11284320	None:intergenic
AACTGTAAGAGACTGCTTAA+AGG	0.329191	1.4:-11284715	None:intergenic
AAGGAGCAATATGTGGCTTT+TGG	0.305661	1.4:-11284696	None:intergenic
AATTTCCATCAGTTAACATA+AGG	0.429722	1.4:-11283058	None:intergenic
ACAAATGTCATAAGTGGATG+GGG	0.569136	1.4:+11284349	MS.gene56089:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTATTAAGAAGGATCTC+GGG	+	chr1.4:11281997-11282016	MS.gene56089:intron	30.0%
AAATCCTTCAACAAATCTAC+AGG	-	chr1.4:11284872-11284891	None:intergenic	30.0%
AACTACAATCAATACTACGA+TGG	-	chr1.4:11283546-11283565	None:intergenic	30.0%
ACATTAAACACAACAAGATG+AGG	-	chr1.4:11283404-11283423	None:intergenic	30.0%
AGAAGAAATGCTCCAATTAA+TGG	+	chr1.4:11284501-11284520	MS.gene56089:CDS	30.0%
AGCAACTTGATAAAAGGTTA+TGG	+	chr1.4:11282996-11283015	MS.gene56089:CDS	30.0%
ATATTGTATGTCTGAAGATC+GGG	-	chr1.4:11283089-11283108	None:intergenic	30.0%
ATGACATTATTTGAGAGTTG+GGG	+	chr1.4:11281817-11281836	MS.gene56089:intron	30.0%
ATGTATAAAAAGCTTGCAAG+TGG	-	chr1.4:11283706-11283725	None:intergenic	30.0%
ATTGAATATGCAGACTAAGT+GGG	-	chr1.4:11282167-11282186	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	11281472	11284975	11281472	ID=MS.gene56089
chr1.4	mRNA	11281472	11284975	11281472	ID=MS.gene56089.t1;Parent=MS.gene56089
chr1.4	exon	11281472	11281538	11281472	ID=MS.gene56089.t1.exon1;Parent=MS.gene56089.t1
chr1.4	CDS	11281472	11281538	11281472	ID=cds.MS.gene56089.t1;Parent=MS.gene56089.t1
chr1.4	exon	11282561	11283472	11282561	ID=MS.gene56089.t1.exon2;Parent=MS.gene56089.t1
chr1.4	CDS	11282561	11283472	11282561	ID=cds.MS.gene56089.t1;Parent=MS.gene56089.t1
chr1.4	exon	11284088	11284975	11284088	ID=MS.gene56089.t1.exon3;Parent=MS.gene56089.t1
chr1.4	CDS	11284088	11284975	11284088	ID=cds.MS.gene56089.t1;Parent=MS.gene56089.t1

Gene Sequence

>MS.gene56089

AAGAAATCAATCAGCAAATGCAAACATGAAGAAAGGAAAAGGGTCATTTCAACTAGTAACTGACAAGGTACTTTAATATTAGTACTTTTATTTTACTGATTCACTGATTTTTGTTCATGTTCTTGATTAGTTGGATATGATTCTGAGAGGTTTTAATTCTAAATTGGCTAAAACAGCACGATACTATAATCAATCATATATCTATTTACCTTTCATTAAAACTAGCAATGTTGTATCGGATGGAGTGTTGGGCGGTAAAGAGCCAACACGGGAGTAAAATAAGCGTAGCAGAGATGAAGATGTTACGTTGGATGTGTGGTAAGAAATGACGTGATAGAATTAGAAATGACATTATTTGAGAGTTGGGGTAGCACCTATCGTAGAAAAGATGGTAGAAACTAGAAACTCGGCTTATGTGGTTTAGGCATGTAGAGAGATAACATGAAGATTATGTAGTAAGGAGAGTTGACCAGATGAAGATTAGTCAAATCACTAGAGACGAAGGACCTAAAAAACCTATACGAGAAACTATTAAGAAGGATCTCGGGATTAATGAGTTGGATAGGGACATGATATATGATAGAACATTATGGCGGAGTTTGATCCATGTAGCCAACCCCACTTTCTGGGATAAGGCGTGGTTGTTGTTGTTGTTGAATTATACTATTGACATTTCCTTTAACATTGCAGACCCCACTTAGTCTGCATATTCAATCTATTTTAGTGGATATTCAACTAATCATTTATTGTTATGTTGAATTAAAATTTTCTAAACATTTTAGGCTTTTGGGATGATTTGGCTTTAGAAAATGGATGCAAAGTCACTGACCTCATATATGATGAAAAAATCTTATGATGTTATTTAGTTCTTTGTAGCCTATGGAAATCACTACTTGCTGATAACAATTGGATACCCTGATGTTTCCATTTGTTTTAACAACTGAACCTAAACCTTAAAATGTGCTTTTTTTGATTAATTGCATTGTATGCTTATTGTTATATAAAATCTATCTAAATCTAGTCTCCTTGAAGTTCTGGGAAAGTTTGTAGTGCTTAAAGCTGAATATCCTTTGGCATGTAATTTGACAGGGGAATCATTCTTACAGCAAGAATCAAATGAATGGAATTGCGAGGGATGAAAATTCAGGAAGTAAACTCACCTGCACTTTCTGCATTTGTAAAAAGACTTGTCGAGTTGTATGCTCAAGAACAAAATTATTGAATATTCTGATTGTATGCGGAAAACCACAAGCAGCTAATGTGATTTTCAAAAAGTTGATTGAAGAAGGGCATCAGCCATCTTTAATAACATACACGTCTTTGTTAAATGCTTTGACCATGCAGAAGTGCTTCAAATCTATACATTCCATTGTCTCGCAAGTGGAAGAAAAACAAATGAAGACTGACTCAATATTTTACAATGCTGTTATAAATGCATTTGCTGAATCCGGGAACATGGAAGATGCAAAAAAAACTGTTCAGAAGATGAAAGAAAGTGGATTCAGACCTTCCACTGGCACTTATAGCAACTTGATAAAAGGTTATGGTATTATAGGCAAGTCCGGTGAAGCAATGAAGTTGCTAGACCTTATGTTAACTGATGGAAATTCGAAACCCGATCTTCAGACATACAATATGCTTGTCAAAGCATTGTGTCAATCGGGGAACATGTCTGAGGCATGGAACATTGTGTGTAAGATGCCTGCTTCTGGAATGCTACCTGATTCTGTAACTTTCAACACAATGGCAATCGGTTATGTTCTTAATAGTGAAACTGCTGAGGCTGAAGCAATGATTTTAGAGATGCAGAGGAAAGGTTTGGAACCAAATGAGAGAACTTTTACCGTCATCGTAAATGGATATTATAAAGAAGGTCAAATTAAGGAAGCCCTGCAGTTCCTTTACAGAATAAAGGATTTGGGGTTTAAGCCTCATCTTGTTGTGTTTAATGTCCTGATTAATGGTTTTGTGGATAGGATGGATAGGGATGGTGTTGATGAGGTAATCTTGAACCTATGCCTAAACTTTTTTCTTGTTAAACTTGCTTTGGATCTGTTAATGAACAAAAGGTCCATCGTAGTATTGATTGTAGTTTTAGATGGATTCAACATAGGATCAATGGAACCTTTTTAATTCATAACCTCTTGACATTCATATTATTATCAATATTCAGTAAAGCATATAAAGCGACAGTGAAAGAAAATGGTAAAGTAGTACTCTCCTAGAATTTACCACTTGCAAGCTTTTTATACATATTTCGAATTATAAACATGTTTCCATCTTCTTAGTCTTGTCACAATGCTTCTTGATTTAACAGTTTTAGAATCATGTGATTCGGTTTGTCATTTTTTTAACCATCTAAAGGACGTTAAATAATTTGGATTTATTGCTCAATGCCTTTGGTTTTTGAATCTTCTTATTCTAGTTAAGTGTTTGTCAAATTAGTGTGCCAAATGTCATGCAGTGTTCTAATACTTTTGGCTCAAAAAGGGAAAAAAAATCAAGTCACCGCTCCTTTGGTTTGCTCGGCATAGTGAATAGCAGTTTCTTTAGTTTTATTTCTGATATGTATGCATTCCACCTTGTAACTAATGGTGAAAATCCTTCTGTATATAGGTTTTGAGATTGATGAAAGAATTTCAAATCCAACCAGATGTGGTAACATACAGCACTATAATGAATGCATGGAGCCAAGCTGGATTCCAGGATAAATGCAAGCAAATTTTCGACAACATGTTGAAATCTGGTGTAAAGCCAGATGTGCATGCTTATAGTATTCTTGCTAAAGGTTATGTGAGATCAATGGAAACAGAGAAAGCCGAAGAACTGCTAGGCGACATGATTGAGTCCGGTGTCCGCCCAAATGTTGTTATATTTACAAATGTCATAAGTGGATGGGGCAGTTCTGGCAGAATGGACAATGCTATGAAGATCTTTGACAAGATGTGTGAATTAGGGGTTTCTCCAAATTTGAGGACTTTTGAGGCCCTTATTTGGGGATATGCAGAAGCAAATCAGCCATGGAAATCAGAAGAAATGCTCCAATTAATGGAGGATTTTCATATTCACCCTAAGAAGTCCACATTCTTGCTTGTTTCAAAAGCTTGGCACTTTGCTGGATTAACAGAAGAAGCTGTTAGATTACAGAGTATTTCAAAAGCCAAACAAAGGATCAATTCAATAGATGAAGATGGCAACATAGCTACAACCTTAGAGAGAATTTACCAAAAGCCACATATTGCTCCTTTAAGCAGTCTCTTACAGTTCCTCCCATCATCTGTAGGTTCCACTGATAAAAAAAGCACAGCTTTGGGAGCTAGAAGAAATAGTCGGCTCCCAAGAGATGCTGATTTGGTGACTACATTGCTCTCGACAAAATTCAAGTGTCATTCTCGTACCTGTAGATTTGTTGAAGGATTTTCCGTCATGTGTCATAAACGGTTTCAAGGTCAGCGTGGTACATACCAACTTGCAAATTCCTGCACACCAGTATTCTTATACTGA

Protein sequence

>MS.gene56089.t1

KKSISKCKHEERKRVISTSNUQGESFLQQESNEWNCEGUKFRKUTHLHFLHLUKDLSSCMLKNKIIEYSDCMRKTTSSUCDFQKVDURRASAIFNNIHVFVKCFDHAEVLQIYTFHCLASGRKTNEDULNILQCCYKCICUIREHGRCKKNCSEDERKWIQTFHWHLUQLDKRLWYYRQVRUSNEVARPYVNUWKFETRSSDIQYACQSIVSIGEHVUGMEHCVUDACFWNATUFCNFQHNGNRLCSUUUNCUGUSNDFRDAEERFGTKUENFYRHRKWILURRSNUGSPAVPLQNKGFGVUASSCCVUCPDUWFCGUDGUGWCUUGFEIDERISNPTRCGNIQHYNECMEPSWIPGUMQANFRQHVEIWCKARCACLUYSCURLCEINGNRESRRTARRHDUVRCPPKCCYIYKCHKWMGQFWQNGQCYEDLUQDVUIRGFSKFEDFUGPYLGICRSKSAMEIRRNAPINGGFSYSPUEVHILACFKSLALCWINRRSCUITEYFKSQTKDQFNRURWQHSYNLRENLPKATYCSFKQSLTVPPIICRFHUUKKHSFGSUKKUSAPKRCUFGDYIALDKIQVSFSYLUICURIFRHVSUTVSRSAWYIPTCKFLHTSILIL