AlfalfaGEDB | MS.gene87280

M. sativa cultivar XinJiangDaYe / MS.gene87280

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87280.t1	XP_003596633.1	97.7	215	5	0	1	215	1	215	5.50E-109	403.7

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87280.t1	G7IJL4	97.7	215	5	0	1	215	1	215	3.9e-109	403.7

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene87280	0.834389	3.08E-56	-1.69E-46
MS.gene049284	MS.gene87280	0.821208	4.56E-53	-1.69E-46
MS.gene049351	MS.gene87280	0.850819	1.33E-60	-1.69E-46
MS.gene049356	MS.gene87280	0.823457	1.37E-53	-1.69E-46
MS.gene049369	MS.gene87280	0.811228	7.77E-51	-1.69E-46
MS.gene049427	MS.gene87280	0.87057	1.32E-66	-1.69E-46
MS.gene049491	MS.gene87280	0.854445	1.23E-61	-1.69E-46
MS.gene049609	MS.gene87280	0.801635	8.20E-49	-1.69E-46
MS.gene049614	MS.gene87280	0.849623	2.87E-60	-1.69E-46
MS.gene049661	MS.gene87280	0.889117	3.23E-73	-1.69E-46

Showing 1 to 10 of 164 entries

Previous1 2 3 4 5…17Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87280.t1	MTR_2g082930	97.674	215	5	0	1	215	1	215	8.29e-157	432

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87280.t1	AT1G51100	69.780	182	47	4	37	215	35	211	1.34e-81	242

Showing 1 to 1 of 1 entries

Previous1Next

Find 38 sgRNAs with CRISPR-Local

Find 50 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTCTTGCTCAGAAGATG+TGG	0.558444	2.2:+14279497	None:intergenic
AAGAGATTGTGTAGATGATG+AGG	0.673918	2.2:+14279606	None:intergenic
AATGGTGAAAGCTTCTGTTA+AGG	0.535346	2.2:-14279088	MS.gene87280:CDS
ACAGAACTGTTGGCAAAAGT+TGG	0.501386	2.2:-14279231	MS.gene87280:CDS
AGGAAAAGTTGAGGAGAGAA+TGG	0.490855	2.2:-14279157	MS.gene87280:CDS
AGGAAGATACTTTGAATGAG+AGG	0.541636	2.2:-14279068	MS.gene87280:CDS
AGTGTTTGTAGGGTCTGGTG+TGG	0.564863	2.2:+14279473	None:intergenic
ATATGGTTCAACAGAACTGT+TGG	0.553725	2.2:-14279241	MS.gene87280:CDS
ATCAAGCTAAGGCTAGGTGC+AGG	0.575411	2.2:-14279041	MS.gene87280:CDS
ATGAAGAGTTAAAATTCAAA+AGG	0.492536	2.2:+14278996	None:intergenic

Showing 1 to 10 of 38 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CAACCTATTTCAAAATTTGG+TGG	+	chr2.2:14279296-14279315	None:intergenic	30.0%
GAACTTATGAAGAAGGAATA+TGG	-	chr2.2:14279389-14279408	MS.gene87280:CDS	30.0%
TCAGAAGATGTGGAATTTAA+TGG	+	chr2.2:14279143-14279162	None:intergenic	30.0%
TGTTCATTGTAGTGTTTGTA+GGG	+	chr2.2:14279187-14279206	None:intergenic	30.0%
TTCTCTATAGGAAATGTTTC+TGG	+	chr2.2:14279212-14279231	None:intergenic	30.0%
AAATTCTTGCTCAGAAGATG+TGG	+	chr2.2:14279153-14279172	None:intergenic	35.0%
AAGAGATTGTGTAGATGATG+AGG	+	chr2.2:14279044-14279063	None:intergenic	35.0%
AATGGTGAAAGCTTCTGTTA+AGG	-	chr2.2:14279559-14279578	MS.gene87280:CDS	35.0%
AGGAAGATACTTTGAATGAG+AGG	-	chr2.2:14279579-14279598	MS.gene87280:CDS	35.0%
ATATGGTTCAACAGAACTGT+TGG	-	chr2.2:14279406-14279425	MS.gene87280:CDS	35.0%

Showing 1 to 10 of 50 entries

Previous1 2 3 4 5Next

Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	14279011	14279658	14279011	ID=MS.gene87280
chr2.2	mRNA	14279011	14279658	14279011	ID=MS.gene87280.t1;Parent=MS.gene87280
chr2.2	exon	14279011	14279658	14279011	ID=MS.gene87280.t1.exon1;Parent=MS.gene87280.t1
chr2.2	CDS	14279011	14279658	14279011	ID=cds.MS.gene87280.t1;Parent=MS.gene87280.t1

Gene Sequence

>MS.gene87280

ATGGCTTCGACATTCCTCACATATCCTGCACCTCATCATCTACACAATCTCTTTCAAACCAACACATCTTCACACCTTTCAACTCACAACAACAAAACCAAAAAGCACTTCTTCATAAAATGCACTACTCCATTAAATTCCACATCTTCTGAGCAAGAATTTCCCACACCAGACCCTACAAACACTACAATGAACAGTCCAGAAACATTTCCTATAGAGAAAAGAAGAAGATCAGAGATAATCAGACAAAGAAGGCCGAAAACCGACCTTGCAAATGCCGAGCCACCAAATTTTGAAATAGGTTGGAAAAGGACAAAAGAGATTAACCTTGAGAAGCCAGTAGGGTATGTGGTAGCTGATTTTTTGGAGAAGTTGGAGGAACTTATGAAGAAGGAATATGGTTCAACAGAACTGTTGGCAAAAGTTGGTGAAATTGTTGCTGAAAGAGCAAGAGAAGAAGCAGAAATTTTGAGAGATGAAGGAAAAGTTGAGGAGAGAATGGTTGTTGAACTTTTTAGAGTTTTGAGGTTGATGGAAATGGATTTGGCAATGGTGAAAGCTTCTGTTAAGGAAGATACTTTGAATGAGAGGCTTGATCAAGCTAAGGCTAGGTGCAGGCAAGCTATACTTGTTTGTTATTCCTTTTGA

Protein sequence

>MS.gene87280.t1

MASTFLTYPAPHHLHNLFQTNTSSHLSTHNNKTKKHFFIKCTTPLNSTSSEQEFPTPDPTNTTMNSPETFPIEKRRRSEIIRQRRPKTDLANAEPPNFEIGWKRTKEINLEKPVGYVVADFLEKLEELMKKEYGSTELLAKVGEIVAERAREEAEILRDEGKVEERMVVELFRVLRLMEMDLAMVKASVKEDTLNERLDQAKARCRQAILVCYSF