AlfalfaGEDB | MS.gene95885

M. sativa cultivar XinJiangDaYe / MS.gene95885

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95885.t1	XP_003631061.1	98.3	176	3	0	1	176	57	232	3.70E-95	357.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95885.t1	G7LD88	98.3	176	3	0	1	176	57	232	2.6e-95	357.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049134	MS.gene95885	-0.820195	7.80E-53	-1.69E-46
MS.gene049137	MS.gene95885	0.804815	1.80E-49	-1.69E-46
MS.gene049150	MS.gene95885	0.807903	4.03E-50	-1.69E-46
MS.gene049153	MS.gene95885	0.811252	7.68E-51	-1.69E-46
MS.gene04933	MS.gene95885	0.802062	6.70E-49	-1.69E-46
MS.gene049346	MS.gene95885	0.809325	2.00E-50	-1.69E-46
MS.gene049351	MS.gene95885	0.852307	5.03E-61	-1.69E-46
MS.gene049356	MS.gene95885	0.834858	2.35E-56	-1.69E-46
MS.gene049369	MS.gene95885	0.803873	2.83E-49	-1.69E-46
MS.gene049661	MS.gene95885	0.835211	1.91E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95885.t1	MTR_8g106690	98.295	176	3	0	1	176	57	232	1.65e-126	355

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95885.t1	AT1G18060	76.000	175	41	1	1	174	50	224	1.14e-96	279

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Find 33 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCAGTGCCTCCACTT+CGG	0.663787	4.3:-702911	None:intergenic
AAACCTCTACAAATCAGCCT+TGG	0.505462	4.3:+702804	MS.gene95885:CDS
AAATGCAGCTAAGACAAGAA+AGG	0.570671	4.3:+701746	MS.gene95885:CDS
AAGCATCCAGGTTCTCCCAG+GGG	0.717216	4.3:-701862	None:intergenic
AATCTCTGAACAGCTGTGAG+AGG	0.593439	4.3:-702017	None:intergenic
ACAAATCAGCCTTGGACAAA+AGG	0.429622	4.3:+702812	MS.gene95885:CDS
AGACAGGGAACCAGGTACAA+AGG	0.628697	4.3:+702836	MS.gene95885:CDS
AGGATTCCCCTGGGAGAACC+TGG	0.442328	4.3:+701856	MS.gene95885:CDS
AGGGGAATCCTTTCCTCCAA+GGG	0.528136	4.3:-701844	None:intergenic
AGGGTGTCAAGAAAAGAAGA+AGG	0.621327	4.3:-701825	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATAAGAGTCCATTTATAG+TGG	+	chr4.3:702093-702112	MS.gene95885:intron	30.0%
ATAACATTGTGATTTACCAC+CGG	-	chr4.3:702406-702425	None:intergenic	30.0%
ATCGGACAATTAACATTTGA+AGG	+	chr4.3:702711-702730	MS.gene95885:CDS	30.0%
GCTTCTAATTATGCAAATGA+AGG	-	chr4.3:702134-702153	None:intergenic	30.0%
TATGCCAAATCATCAAACTA+TGG	+	chr4.3:702563-702582	MS.gene95885:intron	30.0%
TCAAATGTTAATTGTCCGAT+AGG	-	chr4.3:702711-702730	None:intergenic	30.0%
TTCTACATTGGATATTGTGA+TGG	+	chr4.3:702255-702274	MS.gene95885:intron	30.0%
TTGCATAAGAAGAGTTAAGA+AGG	-	chr4.3:702496-702515	None:intergenic	30.0%
AAAAATGGATCCTTTGTACC+TGG	-	chr4.3:702849-702868	None:intergenic	35.0%
AAATGCAGCTAAGACAAGAA+AGG	+	chr4.3:701746-701765	MS.gene95885:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	701717	702962	701717	ID=MS.gene95885
chr4.3	mRNA	701717	702962	701717	ID=MS.gene95885.t1;Parent=MS.gene95885
chr4.3	exon	701717	701899	701717	ID=MS.gene95885.t1.exon1;Parent=MS.gene95885.t1
chr4.3	CDS	701717	701899	701717	ID=cds.MS.gene95885.t1;Parent=MS.gene95885.t1
chr4.3	exon	701990	702049	701990	ID=MS.gene95885.t1.exon2;Parent=MS.gene95885.t1
chr4.3	CDS	701990	702049	701990	ID=cds.MS.gene95885.t1;Parent=MS.gene95885.t1
chr4.3	exon	702675	702962	702675	ID=MS.gene95885.t1.exon3;Parent=MS.gene95885.t1
chr4.3	CDS	702675	702962	702675	ID=cds.MS.gene95885.t1;Parent=MS.gene95885.t1

Gene Sequence

>MS.gene95885

GAAGTAGAGGAATGTGTGAAACTGCTTAAAAATGCAGCTAAGACAAGAAAGGTACCAGCAGAAGAGATTCTTTCAGCACTGTCTCTCATTGAGAAAGCAAAAATTGATCCTTCTTCTTTTCTTGACACCCTTGGAGGAAAGGATTCCCCTGGGAGAACCTGGATGCTTATTTTTACTGCTAAGGTTATAACATATTTCTCTTATTTCGTATGATTCTGGTTTTAAACTATGTTTAGCAGTTTATACTTACTATAATTTTTTGCTGAATTTTAGAAAAAATTAGATGGTGGTGGATATTTTCCTCTCACAGCTGTTCAGAGATTTGATGCTGCTGTAAGTCTCTTTCTTATCATACCATCTATATTTCATTCTAGATACATAAGAGTCCATTTATAGTGGAAAAATTAATAGAGCCCTTCATTTGCATAATTAGAAGCTTTTACCTTTTATGTGTTTGTGTTTTGAACTACATTCTCGGTTTGAGATCTAATATTTTATTTTATTTTTTAAATATAATTTTTACTTATATTAAGGACAATTCTACATTGGATATTGTGATGGTACCACTTTTACGAGGTTGTGAGGATTTTAGGTTGTGCTGTTGTTTCTTAGCCACTTACATGAAATCGGGGTTAACAACACCCACACACCCTGCACACCGAGCCACCGACCACTTGTGCTAAACCCCGGTGGTAAATCACAATGTTATTTGGAATGGCTCTTGTGGAATGTTTTTATCTATGAGTTATAAGGCCTCTATAAAAGATTCTTCATTGCCTTCTTAACTCTTCTTATGCAAGCAATGTTGTATTGCTGTTCTTTGTTTTATTCCTTGTAAATGTTGCATATGCCAAATCATCAAACTATGGCTAAGTTATCTTTAGAAGAAAAAAAACTAGGGTATTTTTTTTTTAATTTCTTCTGTCTAAGTTAGACTGTTATGTTGATAAATTGTTAGGCAAAAAGGATCGAAAACGGTGTATTTCTTGGACCTATCGGACAATTAACATTTGAAGGCAGACTGTCGTGGAAAAACAGAATATTGTCTTTCATTTTTGAGAACCTTCGAATAAAAGTTGGACCTTTAAAACCTCTACAAATCAGCCTTGGACAAAAGGAAGACAGGGAACCAGGTACAAAGGATCCATTTTTTATCTGGTTTTATGTTGATGAGGAAATAGCTGTTGCTCGAGGCCGAAGTGGAGGCACTGCATTTTGGTGTCGGTGTCGTCAGGTTGATATTTGA

Protein sequence

>MS.gene95885.t1

EVEECVKLLKNAAKTRKVPAEEILSALSLIEKAKIDPSSFLDTLGGKDSPGRTWMLIFTAKKKLDGGGYFPLTAVQRFDAAAKRIENGVFLGPIGQLTFEGRLSWKNRILSFIFENLRIKVGPLKPLQISLGQKEDREPGTKDPFFIWFYVDEEIAVARGRSGGTAFWCRCRQVDI