AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0079720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0079720 MtrunA17_Chr1g0191221 92.097 329 12 1 1 315 1 329 0.0 585
Msa0079720 MtrunA17_Chr7g0273601 69.851 335 60 7 1 315 1 314 5.39e-155 446
Msa0079720 MtrunA17_Chr2g0286421 74.648 284 52 5 48 315 30 309 9.69e-146 421
Msa0079720 MtrunA17_Chr4g0066691 75.397 252 48 1 78 315 60 311 1.08e-134 393
Msa0079720 MtrunA17_Chr2g0317501 57.386 352 102 7 1 315 1 341 2.60e-125 374
Msa0079720 MtrunA17_Chr3g0131861 65.505 287 71 5 45 315 30 304 3.40e-121 359
Msa0079720 MtrunA17_Chr2g0324461 56.250 352 113 8 1 315 1 348 6.42e-120 360
Msa0079720 MtrunA17_Chr4g0040141 55.294 340 123 7 1 315 1 336 3.25e-118 355
Msa0079720 MtrunA17_Chr4g0061141 63.710 248 76 1 82 315 65 312 4.50e-112 339
Msa0079720 MtrunA17_Chr8g0385971 70.563 231 54 1 99 315 67 297 1.45e-111 334
Msa0079720 MtrunA17_Chr5g0396361 64.198 243 72 2 88 315 105 347 4.39e-108 327
Msa0079720 MtrunA17_Chr7g0218071 60.996 241 76 2 91 315 89 327 6.69e-105 321
Msa0079720 MtrunA17_Chr6g0453711 59.200 250 84 2 82 315 70 317 6.39e-104 316
Msa0079720 MtrunA17_Chr1g0201571 44.868 341 154 5 1 315 1 333 3.04e-91 283
Msa0079720 MtrunA17_Chr8g0383451 56.931 202 73 1 128 315 4 205 3.18e-76 240
Msa0079720 MtrunA17_Chr3g0093391 50.661 227 82 4 117 314 18 243 3.10e-64 211
Msa0079720 MtrunA17_Chr3g0093571 50.661 227 82 4 117 314 20 245 8.82e-64 209
Msa0079720 MtrunA17_Chr4g0051261 42.056 214 101 8 120 315 2 210 4.85e-41 144
Msa0079720 MtrunA17_Chr2g0293491 42.056 214 101 8 120 315 2 210 1.07e-39 141
Msa0079720 MtrunA17_Chr8g0377071 41.284 218 101 4 117 314 380 590 1.40e-39 147
Msa0079720 MtrunA17_Chr3g0122781 40.826 218 102 4 117 314 411 621 9.23e-39 145
Msa0079720 MtrunA17_Chr4g0057791 41.014 217 107 6 117 315 213 426 7.64e-37 138
Msa0079720 MtrunA17_Chr3g0099951 38.636 220 102 9 119 315 11 220 1.48e-34 130
Msa0079720 MtrunA17_Chr6g0483151 40.654 214 104 8 119 315 11 218 2.09e-34 129
Msa0079720 MtrunA17_Chr1g0187371 39.726 219 107 8 120 315 16 232 1.05e-33 125
Msa0079720 MtrunA17_Chr4g0002001 36.087 230 107 9 120 314 2 226 4.18e-30 116
Msa0079720 MtrunA17_Chr3g0130781 35.470 234 117 6 108 311 4 233 6.25e-30 118
Msa0079720 MtrunA17_Chr8g0387401 36.150 213 106 7 125 315 55 259 1.12e-27 110
Msa0079720 MtrunA17_Chr8g0378831 38.991 218 94 10 125 315 35 240 1.47e-27 110
Msa0079720 MtrunA17_Chr5g0409421 33.810 210 119 6 120 315 2 205 2.45e-27 110
Msa0079720 MtrunA17_Chr8g0339221 36.585 205 110 5 125 315 7 205 2.46e-27 110
Msa0079720 MtrunA17_Chr4g0045841 37.864 206 106 7 128 315 61 262 9.21e-27 108
Msa0079720 MtrunA17_Chr1g0194201 32.432 222 120 8 116 315 69 282 3.66e-26 107
Msa0079720 MtrunA17_Chr7g0248461 36.283 226 113 7 109 315 32 245 5.65e-26 106
Msa0079720 MtrunA17_Chr8g0359091 33.790 219 122 8 118 315 22 238 6.33e-26 107
Msa0079720 MtrunA17_Chr3g0141871 37.799 209 101 9 125 311 35 236 6.70e-26 105
Msa0079720 MtrunA17_Chr4g0030151 38.164 207 104 7 128 315 45 246 1.21e-25 105
Msa0079720 MtrunA17_Chr7g0270371 31.839 223 120 7 116 315 69 282 1.25e-25 105
Msa0079720 MtrunA17_Chr8g0369451 32.857 210 121 6 120 315 2 205 2.76e-25 105
Msa0079720 MtrunA17_Chr2g0320011 31.799 239 127 8 105 315 65 295 3.82e-25 104
Msa0079720 MtrunA17_Chr5g0397261 35.514 214 100 8 128 315 47 248 6.87e-25 103
Msa0079720 MtrunA17_Chr4g0030231 36.190 210 104 7 128 315 46 247 8.54e-25 102
Msa0079720 MtrunA17_Chr8g0392811 33.641 217 125 6 118 315 113 329 1.04e-24 104
Msa0079720 MtrunA17_Chr2g0277011 31.905 210 113 7 128 315 96 297 1.07e-24 103
Msa0079720 MtrunA17_Chr8g0348481 36.190 210 110 6 125 315 40 244 1.42e-24 102
Msa0079720 MtrunA17_Chr2g0284091 31.532 222 122 7 116 315 34 247 3.62e-24 101
Msa0079720 MtrunA17_Chr1g0193081 31.532 222 122 8 116 315 69 282 4.88e-24 101
Msa0079720 MtrunA17_Chr8g0350311 30.180 222 125 6 116 315 133 346 5.66e-24 101
Msa0079720 MtrunA17_Chr6g0482681 33.182 220 122 8 118 315 85 301 6.51e-24 102
Msa0079720 MtrunA17_Chr2g0287271 34.762 210 112 8 128 315 31 237 1.04e-23 101
Msa0079720 MtrunA17_Chr4g0065851 34.286 210 113 8 128 315 31 237 1.42e-23 100
Msa0079720 MtrunA17_Chr3g0096631 33.790 219 120 9 119 315 22 237 2.22e-23 100
Msa0079720 MtrunA17_Chr5g0443351 32.569 218 124 8 119 315 19 234 3.37e-23 99.4
Msa0079720 MtrunA17_Chr7g0246591 30.493 223 123 6 116 315 135 348 3.99e-23 99.4
Msa0079720 MtrunA17_Chr8g0358921 32.850 207 117 6 123 309 48 252 5.21e-23 97.4
Msa0079720 MtrunA17_Chr2g0314321 30.213 235 124 9 119 315 22 254 7.72e-22 95.9
Msa0079720 MtrunA17_Chr3g0102571 31.518 257 107 10 122 312 32 285 8.43e-22 95.1
Msa0079720 MtrunA17_Chr3g0130151 30.457 197 116 7 128 307 250 442 2.56e-18 85.5
Msa0079720 MtrunA17_Chr4g0038091 30.151 199 117 5 126 307 24 217 4.41e-18 85.1
Msa0079720 MtrunA17_Chr8g0384301 31.980 197 113 7 128 307 305 497 1.44e-17 83.6
Msa0079720 MtrunA17_Chr4g0038501 29.648 199 118 5 126 307 24 217 1.57e-17 83.6
Msa0079720 MtrunA17_Chr5g0402601 29.808 208 110 9 128 307 378 577 1.76e-17 83.2
Msa0079720 MtrunA17_Chr3g0133541 31.188 202 115 9 128 307 313 512 2.24e-17 82.8
Msa0079720 MtrunA17_Chr4g0030241 46.988 83 42 1 233 315 28 108 2.57e-17 78.6
Msa0079720 MtrunA17_Chr1g0202831 30.457 197 116 8 128 307 417 609 9.98e-17 80.9
Msa0079720 MtrunA17_Chr7g0245031 29.245 212 120 9 120 311 146 347 4.59e-16 78.6
Msa0079720 MtrunA17_Chr7g0244521 30.570 193 117 6 128 305 18 208 4.71e-15 75.5
Msa0079720 MtrunA17_Chr8g0386981 26.108 203 117 7 128 307 414 606 3.18e-14 73.6
Msa0079720 MtrunA17_Chr8g0353621 31.527 203 117 7 120 307 8 203 8.37e-14 70.5
Msa0079720 MtrunA17_Chr5g0441011 29.524 210 124 6 115 305 6 210 8.92e-14 71.6
Msa0079720 MtrunA17_Chr4g0008561 27.830 212 119 7 127 315 24 224 1.53e-13 71.2
Msa0079720 MtrunA17_Chr1g0166101 31.658 199 108 9 128 305 30 221 1.67e-13 70.9
Msa0079720 MtrunA17_Chr1g0205931 27.363 201 122 9 128 307 61 258 3.17e-13 70.1
Msa0079720 MtrunA17_Chr7g0272841 27.861 201 121 9 128 307 74 271 3.53e-13 70.1
Msa0079720 MtrunA17_Chr4g0013131 28.293 205 128 7 128 317 18 218 7.27e-13 68.9
Msa0079720 MtrunA17_Chr8g0351491 30.392 204 118 8 120 307 14 209 8.19e-13 67.8
Msa0079720 MtrunA17_Chr2g0286501 31.604 212 118 9 120 312 47 250 1.11e-12 68.9
Msa0079720 MtrunA17_Chr3g0129721 29.717 212 119 6 127 317 30 232 1.83e-12 66.6
Msa0079720 MtrunA17_Chr4g0053951 26.214 206 133 6 120 312 118 317 2.47e-12 67.0
Msa0079720 MtrunA17_Chr8g0361251 27.962 211 119 7 122 308 507 708 3.45e-12 67.4
Msa0079720 MtrunA17_Chr2g0304111 26.961 204 131 5 118 305 19 220 3.60e-12 66.6
Msa0079720 MtrunA17_Chr4g0053821 25.243 206 135 6 120 312 87 286 7.52e-12 65.5
Msa0079720 MtrunA17_Chr6g0486031 52.941 51 24 0 265 315 271 321 1.08e-11 65.1
Msa0079720 MtrunA17_Chr2g0276911 52.830 53 25 0 91 143 36 88 2.04e-11 64.3
Msa0079720 MtrunA17_Chr8g0390341 38.202 89 52 2 228 315 248 334 2.08e-11 64.3
Msa0079720 MtrunA17_Chr4g0029241 27.700 213 122 7 127 313 122 328 2.30e-11 64.3
Msa0079720 MtrunA17_Chr1g0188031 28.000 200 116 6 128 305 26 219 2.51e-11 64.3
Msa0079720 MtrunA17_Chr5g0419441 26.866 201 127 5 122 307 239 434 4.27e-11 63.9
Msa0079720 MtrunA17_Chr2g0317001 25.974 231 141 9 109 317 2 224 4.45e-11 63.9
Msa0079720 MtrunA17_Chr5g0401371 28.502 207 127 7 120 312 113 312 5.21e-11 63.2
Msa0079720 MtrunA17_Chr7g0222321 27.660 235 129 9 114 317 719 943 5.27e-11 63.5
Msa0079720 MtrunA17_Chr8g0360591 28.708 209 118 7 122 307 44 244 5.71e-11 62.8
Msa0079720 MtrunA17_Chr5g0428031 28.986 207 127 6 115 305 2 204 7.85e-11 62.8
Msa0079720 MtrunA17_Chr8g0361441 28.111 217 113 9 119 306 504 706 8.11e-11 63.2
Msa0079720 MtrunA17_Chr4g0048641 29.381 194 119 7 115 306 481 658 9.19e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0079720 AT1G54610.1 65.179 336 85 6 1 315 1 325 1.49e-143 417
Msa0079720 AT1G54610.3 65.179 336 85 6 1 315 1 325 1.49e-143 417
Msa0079720 AT1G54610.2 65.179 336 85 6 1 315 1 325 1.49e-143 417
Msa0079720 AT3G05050.3 61.449 345 103 5 1 315 1 345 1.50e-132 389
Msa0079720 AT3G05050.2 61.449 345 103 5 1 315 1 345 1.50e-132 389
Msa0079720 AT3G05050.1 61.449 345 103 5 1 315 1 345 1.50e-132 389
Msa0079720 AT1G53050.2 71.901 242 54 1 88 315 100 341 1.22e-121 365
Msa0079720 AT1G53050.1 71.901 242 54 1 88 315 100 341 1.22e-121 365
Msa0079720 AT5G50860.2 54.955 333 120 4 1 315 1 321 2.83e-115 342
Msa0079720 AT5G50860.1 54.955 333 120 4 1 315 1 321 5.07e-114 342
Msa0079720 AT1G33770.1 50.975 359 121 8 1 315 1 348 7.96e-112 337
Msa0079720 AT1G71530.4 62.835 261 78 2 70 316 100 355 4.15e-111 327
Msa0079720 AT1G74330.3 63.600 250 75 2 82 315 81 330 4.31e-110 333
Msa0079720 AT1G71530.3 63.077 260 77 2 70 315 100 354 6.09e-110 326
Msa0079720 AT1G74330.2 63.600 250 75 2 82 315 81 330 1.60e-109 333
Msa0079720 AT1G74330.1 63.600 250 75 2 82 315 81 330 2.10e-109 333
Msa0079720 AT1G71530.2 67.511 237 63 1 93 315 118 354 2.12e-109 326
Msa0079720 AT1G18670.2 62.249 249 79 2 82 315 91 339 9.01e-109 330
Msa0079720 AT1G03740.2 64.609 243 72 1 87 315 178 420 1.30e-108 331
Msa0079720 AT1G18670.1 62.249 249 79 2 82 315 91 339 1.70e-108 331
Msa0079720 AT1G18670.3 62.249 249 79 2 82 315 91 339 2.87e-108 331
Msa0079720 AT5G44290.7 51.744 344 137 6 1 315 1 344 2.93e-108 325
Msa0079720 AT1G03740.1 64.609 243 72 1 87 315 178 420 5.87e-108 331
Msa0079720 AT1G71530.1 67.511 237 63 1 93 315 118 354 6.19e-108 328
Msa0079720 AT4G10010.2 63.374 243 75 1 87 315 121 363 6.64e-108 328
Msa0079720 AT5G44290.6 51.744 344 137 6 1 315 1 344 5.34e-107 325
Msa0079720 AT5G44290.2 51.744 344 137 6 1 315 1 344 7.88e-107 325
Msa0079720 AT5G44290.5 51.744 344 137 6 1 315 1 344 7.88e-107 325
Msa0079720 AT5G44290.4 51.744 344 137 6 1 315 1 344 7.88e-107 325
Msa0079720 AT5G44290.1 51.744 344 137 6 1 315 1 344 7.88e-107 325
Msa0079720 AT5G44290.3 51.744 344 137 6 1 315 1 344 7.88e-107 325
Msa0079720 AT1G09600.1 65.690 239 68 1 91 315 132 370 2.48e-106 326
Msa0079720 AT5G39420.1 56.680 247 93 1 83 315 66 312 4.22e-103 315
Msa0079720 AT1G57700.1 60.714 252 82 2 81 315 102 353 1.81e-99 307
Msa0079720 AT3G01085.1 53.689 244 99 2 86 315 79 322 5.61e-95 294
Msa0079720 AT3G01085.2 53.689 244 99 2 86 315 79 322 5.61e-95 294
Msa0079720 AT3G01085.3 53.689 244 99 2 86 315 79 322 7.06e-95 294
Msa0079720 AT4G22940.1 54.812 239 93 2 92 315 73 311 1.39e-84 262
Msa0079720 AT4G22940.2 54.812 239 93 2 92 315 73 311 7.62e-84 263
Msa0079720 AT4G10010.1 62.295 183 55 1 147 315 1 183 5.23e-74 235
Msa0079720 AT5G64960.1 50.435 230 84 4 114 314 18 246 7.84e-65 213
Msa0079720 AT5G10270.1 49.565 230 86 4 114 314 18 246 4.25e-64 211
Msa0079720 AT5G64960.2 49.714 175 60 2 168 314 19 193 3.43e-46 162
Msa0079720 AT1G67580.1 41.553 219 99 6 117 314 401 611 6.07e-43 157
Msa0079720 AT1G67580.2 41.553 219 99 6 117 314 401 611 6.07e-43 157
Msa0079720 AT1G66750.1 42.723 213 99 8 120 315 11 217 8.38e-42 148
Msa0079720 AT3G48750.1 42.130 216 98 9 120 315 2 210 1.92e-41 146
Msa0079720 AT5G63370.9 40.639 219 108 8 117 315 158 374 1.27e-39 144
Msa0079720 AT5G63370.5 40.183 219 109 7 117 315 292 508 2.68e-39 145
Msa0079720 AT5G63370.10 40.183 219 109 7 117 315 292 508 2.68e-39 145
Msa0079720 AT5G63370.2 40.639 219 108 8 117 315 158 374 6.71e-39 143
Msa0079720 AT5G63370.3 40.639 219 108 8 117 315 158 374 6.71e-39 143
Msa0079720 AT5G63370.7 40.183 219 109 7 117 315 292 508 1.04e-38 144
Msa0079720 AT5G63370.8 40.183 219 109 7 117 315 292 508 1.04e-38 144
Msa0079720 AT5G63370.4 40.183 219 109 7 117 315 292 508 1.04e-38 144
Msa0079720 AT5G63370.6 40.183 219 109 7 117 315 292 508 1.04e-38 144
Msa0079720 AT5G63370.1 40.183 219 109 7 117 315 292 508 1.04e-38 144
Msa0079720 AT1G76540.1 40.724 221 102 9 120 315 12 228 4.23e-35 129
Msa0079720 AT1G20930.1 39.013 223 103 8 120 315 14 230 4.03e-34 127
Msa0079720 AT1G18040.1 38.991 218 109 9 116 315 5 216 1.66e-33 127
Msa0079720 AT1G73690.1 40.092 217 108 9 116 315 4 215 1.47e-32 125
Msa0079720 AT2G38620.3 37.445 227 108 9 120 314 2 226 1.75e-32 121
Msa0079720 AT2G38620.1 37.445 227 108 9 120 314 2 226 1.75e-32 121
Msa0079720 AT2G38620.2 37.719 228 106 10 120 314 2 226 5.14e-32 121
Msa0079720 AT3G54180.1 37.004 227 107 9 120 314 2 224 2.15e-31 120
Msa0079720 AT2G38620.4 37.056 197 88 8 120 314 2 164 8.19e-29 111
Msa0079720 AT2G46070.2 36.620 213 105 7 125 315 44 248 2.65e-28 112
Msa0079720 AT2G46070.1 36.620 213 105 7 125 315 44 248 3.34e-28 112
Msa0079720 AT4G19110.2 37.143 210 112 7 120 315 2 205 4.36e-28 113
Msa0079720 AT2G46070.3 36.620 213 105 7 125 315 78 282 4.58e-28 112
Msa0079720 AT4G19110.1 37.143 210 112 7 120 315 2 205 4.60e-28 113
Msa0079720 AT4G13020.7 36.792 212 110 7 120 315 2 205 5.34e-28 112
Msa0079720 AT4G13020.6 36.792 212 110 7 120 315 2 205 5.72e-28 112
Msa0079720 AT4G13020.4 36.792 212 110 7 120 315 2 205 6.82e-28 112
Msa0079720 AT4G13020.1 36.792 212 110 7 120 315 2 205 1.10e-27 112
Msa0079720 AT4G13020.2 37.143 210 108 7 122 315 12 213 1.47e-27 112
Msa0079720 AT4G13020.3 37.143 210 108 7 122 315 12 213 1.49e-27 112
Msa0079720 AT3G45640.1 37.915 211 99 8 128 315 44 245 3.56e-27 109
Msa0079720 AT4G01370.1 36.715 207 107 7 128 315 49 250 7.28e-26 106
Msa0079720 AT1G06390.2 32.218 239 126 8 105 315 47 277 7.64e-26 106
Msa0079720 AT1G06390.1 32.218 239 126 8 105 315 47 277 7.64e-26 106
Msa0079720 AT5G63610.1 34.222 225 114 7 116 311 19 238 1.03e-25 107
Msa0079720 AT4G11330.1 34.667 225 118 8 109 315 37 250 1.26e-25 105
Msa0079720 AT2G43790.1 36.408 206 109 7 128 315 69 270 1.53e-25 105
Msa0079720 AT1G59580.2 33.068 251 124 11 85 311 6 236 1.53e-25 105
Msa0079720 AT1G59580.1 33.068 251 124 11 85 311 6 236 1.53e-25 105
Msa0079720 AT4G13020.8 33.945 218 117 5 120 315 2 214 1.68e-25 105
Msa0079720 AT4G36450.1 37.321 209 99 9 125 311 35 233 2.20e-25 104
Msa0079720 AT3G59790.1 36.916 214 103 8 125 315 63 267 2.63e-25 105
Msa0079720 AT5G45430.1 32.857 210 121 6 120 315 2 205 2.64e-25 105
Msa0079720 AT5G45430.2 32.857 210 121 6 120 315 2 205 3.13e-25 105
Msa0079720 AT4G13020.5 34.703 219 114 7 120 315 2 214 3.89e-25 105
Msa0079720 AT1G10210.2 36.792 212 105 8 122 311 32 236 5.92e-25 103
Msa0079720 AT1G10210.3 36.792 212 105 8 122 311 32 236 5.92e-25 103
Msa0079720 AT1G10210.1 36.792 212 105 8 122 311 32 236 5.92e-25 103
Msa0079720 AT1G07880.1 35.407 209 113 7 125 315 36 240 1.09e-24 100
Msa0079720 AT3G61160.3 33.333 210 110 6 128 315 108 309 1.13e-24 102
Msa0079720 AT3G61160.5 33.333 210 110 6 128 315 108 309 1.25e-24 102
Msa0079720 AT4G18710.2 31.532 222 122 6 116 315 28 241 1.28e-24 100
Msa0079720 AT3G61160.6 33.333 210 110 6 128 315 115 316 1.32e-24 102
Msa0079720 AT3G14720.1 32.569 218 124 8 119 315 22 237 1.41e-24 104
Msa0079720 AT5G14640.1 31.081 222 123 6 116 315 68 281 1.44e-24 103
Msa0079720 AT5G14640.2 31.081 222 123 6 116 315 68 281 1.44e-24 103
Msa0079720 AT3G14720.2 33.641 217 123 7 119 315 22 237 1.54e-24 103
Msa0079720 AT3G14720.3 33.641 217 123 7 119 315 22 237 1.54e-24 103
Msa0079720 AT2G42880.2 33.486 218 122 8 119 315 22 237 2.07e-24 103
Msa0079720 AT1G57870.1 33.333 210 110 7 128 315 88 289 2.23e-24 102
Msa0079720 AT1G57870.4 33.333 210 110 7 128 315 88 289 2.23e-24 102
Msa0079720 AT1G57870.2 33.333 210 110 7 128 315 88 289 2.23e-24 102
Msa0079720 AT2G42880.1 33.486 218 122 8 119 315 22 237 2.71e-24 103
Msa0079720 AT1G57870.3 33.333 210 110 7 128 315 88 289 2.93e-24 102
Msa0079720 AT1G73670.1 33.632 223 117 9 118 315 86 302 2.98e-24 103
Msa0079720 AT3G05840.2 31.081 222 123 7 116 315 67 280 3.32e-24 102
Msa0079720 AT3G05840.1 31.081 222 123 7 116 315 67 280 3.32e-24 102
Msa0079720 AT3G61160.1 33.333 210 110 6 128 315 108 309 4.42e-24 102
Msa0079720 AT2G18170.1 33.202 253 125 12 83 311 4 236 4.74e-24 101
Msa0079720 AT3G61160.2 33.333 210 110 6 128 315 115 316 5.06e-24 102
Msa0079720 AT1G07880.2 35.407 209 113 7 125 315 36 240 5.72e-24 100
Msa0079720 AT5G26751.1 31.982 222 121 8 116 315 63 276 6.06e-24 101
Msa0079720 AT3G61160.4 33.333 210 110 6 128 315 108 309 7.24e-24 101
Msa0079720 AT1G18150.3 33.636 220 121 7 118 315 100 316 8.00e-24 102
Msa0079720 AT1G18150.2 33.636 220 121 7 118 315 100 316 8.00e-24 102
Msa0079720 AT1G18150.1 33.636 220 121 7 118 315 100 316 8.00e-24 102
Msa0079720 AT5G19010.1 34.762 210 112 8 128 315 31 237 8.77e-24 102
Msa0079720 AT4G00720.1 31.390 223 121 7 116 315 132 345 9.26e-24 101
Msa0079720 AT4G18710.1 31.532 222 122 6 116 315 34 247 9.61e-24 100
Msa0079720 AT1G53510.1 32.110 218 125 8 119 315 22 237 1.09e-23 101
Msa0079720 AT3G18040.4 33.333 219 123 9 118 315 128 344 1.38e-23 101
Msa0079720 AT2G30980.1 30.962 239 129 8 105 315 49 279 1.39e-23 100
Msa0079720 AT3G18040.5 33.333 219 123 9 118 315 14 230 1.40e-23 101
Msa0079720 AT3G18040.1 33.333 219 123 9 118 315 19 235 1.76e-23 100
Msa0079720 AT3G18040.3 34.404 218 122 8 118 315 128 344 1.84e-23 101
Msa0079720 AT1G09840.3 31.308 214 109 7 128 315 89 290 1.22e-22 97.8
Msa0079720 AT1G09840.7 31.308 214 109 7 128 315 89 290 1.22e-22 97.8
Msa0079720 AT1G09840.10 31.308 214 109 7 128 315 89 290 1.22e-22 97.8
Msa0079720 AT1G09840.6 31.308 214 109 7 128 315 89 290 1.22e-22 97.8
Msa0079720 AT1G09840.4 31.308 214 109 7 128 315 89 290 1.22e-22 97.8
Msa0079720 AT1G09840.1 31.308 214 109 7 128 315 89 290 1.22e-22 97.8
Msa0079720 AT1G09840.9 31.308 214 109 7 128 315 89 290 1.22e-22 97.8
Msa0079720 AT1G09840.5 31.308 214 109 7 128 315 89 290 1.22e-22 97.8
Msa0079720 AT1G09840.8 31.308 214 109 7 128 315 89 290 1.22e-22 97.8
Msa0079720 AT1G09840.2 31.308 214 109 7 128 315 89 290 1.22e-22 97.8
Msa0079720 AT1G01560.4 35.266 207 110 6 128 315 46 247 1.83e-22 95.1
Msa0079720 AT1G01560.1 35.266 207 110 6 128 315 46 247 1.83e-22 95.1
Msa0079720 AT1G01560.2 35.749 207 109 6 128 315 46 247 2.14e-22 96.7
Msa0079720 AT1G01560.3 35.266 207 110 6 128 315 46 247 4.78e-22 95.1
Msa0079720 AT2G01450.3 31.050 219 128 9 118 315 12 228 5.91e-21 93.6
Msa0079720 AT2G01450.1 31.050 219 128 9 118 315 12 228 5.91e-21 93.6
Msa0079720 AT2G01450.2 31.050 219 128 9 118 315 12 228 5.91e-21 93.6
Msa0079720 AT2G01450.4 31.050 219 128 9 118 315 12 228 5.91e-21 93.6
Msa0079720 AT1G53570.7 30.837 227 125 8 105 307 194 412 2.20e-18 85.9
Msa0079720 AT1G53570.6 30.837 227 125 8 105 307 194 412 2.26e-18 85.9
Msa0079720 AT1G53570.1 30.837 227 125 8 105 307 194 412 3.17e-18 85.5
Msa0079720 AT1G53570.4 30.837 227 125 8 105 307 194 412 3.29e-18 85.5
Msa0079720 AT1G53570.2 30.837 227 125 8 105 307 194 412 3.32e-18 85.5
Msa0079720 AT1G53570.3 30.837 227 125 8 105 307 194 412 3.32e-18 85.5
Msa0079720 AT4G19110.3 38.961 154 75 6 176 315 1 149 4.03e-18 84.7
Msa0079720 AT3G13530.1 29.648 199 118 5 126 307 24 217 2.00e-17 83.6
Msa0079720 AT5G66850.1 29.437 231 111 8 116 307 334 551 5.30e-17 82.0
Msa0079720 AT5G66850.2 29.437 231 111 8 116 307 334 551 5.64e-17 82.0
Msa0079720 AT1G18350.1 30.469 256 145 9 74 310 5 246 1.71e-16 79.0
Msa0079720 AT5G18700.1 30.769 208 121 6 120 312 2 201 3.41e-16 80.1
Msa0079720 AT3G07980.2 28.643 199 120 5 126 307 24 217 8.01e-16 79.0
Msa0079720 AT3G07980.1 28.643 199 120 5 126 307 24 217 8.41e-16 79.0
Msa0079720 AT2G37840.1 30.583 206 121 8 127 315 17 217 1.49e-15 77.8
Msa0079720 AT3G06030.1 26.818 220 127 7 116 307 58 271 2.07e-15 77.4
Msa0079720 AT1G63700.1 26.904 197 123 7 128 307 406 598 5.35e-15 76.3
Msa0079720 AT1G63700.2 26.904 197 123 7 128 307 406 598 5.35e-15 76.3
Msa0079720 AT5G42440.1 31.606 193 111 7 128 302 87 276 8.11e-15 74.7
Msa0079720 AT3G53930.1 27.670 206 127 7 127 315 25 225 8.11e-15 75.5
Msa0079720 AT3G53930.2 27.670 206 127 7 127 315 25 225 8.19e-15 75.5
Msa0079720 AT5G21326.1 29.665 209 125 6 115 305 6 210 2.18e-14 73.9
Msa0079720 AT3G25840.1 30.488 246 123 13 96 313 601 826 3.41e-14 73.9
Msa0079720 AT3G18040.2 36.765 136 70 5 196 315 12 147 4.01e-14 72.8
Msa0079720 AT3G25840.2 30.488 246 123 13 96 313 339 564 6.77e-14 72.8
Msa0079720 AT1G09840.11 30.769 169 85 6 173 315 1 163 7.56e-14 71.2
Msa0079720 AT2G45490.1 31.034 203 114 10 122 307 22 215 2.79e-13 69.3
Msa0079720 AT2G45490.2 31.034 203 114 10 122 307 22 215 3.34e-13 68.9
Msa0079720 AT1G54960.1 27.094 203 118 9 128 306 74 270 5.47e-13 70.1
Msa0079720 AT1G54960.2 27.094 203 118 9 128 306 74 270 5.47e-13 70.1
Msa0079720 AT1G09000.1 26.368 201 122 8 128 306 75 271 1.86e-12 68.6
Msa0079720 AT5G67380.2 30.120 166 100 6 161 312 111 274 2.04e-12 67.8
Msa0079720 AT2G26980.1 28.502 207 130 5 115 305 7 211 2.17e-12 67.8
Msa0079720 AT2G26980.3 28.502 207 130 5 115 305 7 211 2.35e-12 67.8
Msa0079720 AT2G26980.4 28.502 207 130 5 115 305 17 221 2.35e-12 67.8
Msa0079720 AT2G26980.5 28.502 207 130 5 115 305 7 211 2.88e-12 67.4
Msa0079720 AT2G23080.1 25.728 206 134 6 120 312 32 231 3.20e-12 66.6
Msa0079720 AT1G09000.2 26.368 201 122 8 128 306 75 271 4.16e-12 67.4
Msa0079720 AT2G23080.2 25.728 206 134 6 120 312 32 231 5.06e-12 65.9
Msa0079720 AT4G28980.3 54.902 51 23 0 265 315 289 339 6.50e-12 66.6
Msa0079720 AT4G28980.1 54.902 51 23 0 265 315 289 339 6.50e-12 66.6
Msa0079720 AT4G28980.2 54.902 51 23 0 265 315 289 339 6.50e-12 66.6
Msa0079720 AT2G26980.2 28.502 207 130 5 115 305 7 211 7.32e-12 65.1
Msa0079720 AT3G21220.2 27.861 201 123 6 122 306 70 264 1.14e-11 65.1
Msa0079720 AT3G21220.1 27.861 201 123 6 122 306 70 264 1.14e-11 65.1
Msa0079720 AT1G61370.2 27.014 211 127 8 119 308 347 551 1.37e-11 65.9
Msa0079720 AT2G23070.1 25.243 206 135 6 120 312 130 329 1.69e-11 65.1
Msa0079720 AT5G60550.1 26.432 227 131 9 108 306 95 313 2.06e-11 64.7
Msa0079720 AT2G32510.1 29.293 198 113 7 128 307 9 197 2.11e-11 64.7
Msa0079720 AT5G67380.1 28.986 207 126 7 120 312 108 307 2.40e-11 64.7
Msa0079720 AT1G61370.1 27.014 211 127 8 119 308 498 702 2.48e-11 65.1
Msa0079720 AT1G29730.4 26.442 208 127 5 119 306 637 838 2.72e-11 65.1
Msa0079720 AT3G50000.1 28.986 207 126 7 120 312 102 301 3.08e-11 64.3
Msa0079720 AT5G35410.2 29.952 207 121 8 117 305 6 206 4.32e-11 63.5
Msa0079720 AT1G61380.2 28.311 219 122 8 115 308 334 542 4.49e-11 64.3
Msa0079720 AT1G29730.1 26.442 208 127 5 119 306 637 838 4.62e-11 64.3
Msa0079720 AT5G35410.1 29.952 207 121 8 117 305 6 206 5.89e-11 63.5
Msa0079720 AT1G61380.1 28.311 219 122 8 115 308 481 689 7.74e-11 63.5

Find 120 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGGTTCGGTTTGATAATT+TGG 0.098729 1_2:+57693645 Msa0079720:CDS
TCCGCGGAATCCACCCATTA+AGG 0.177679 1_2:-57693249 None:intergenic
GCAAGCAATAAACAAGTATT+TGG 0.245143 1_2:-57693945 None:intergenic
CTTCTCGGTGCCACAGATTA+TGG 0.257747 1_2:+57694283 Msa0079720:CDS
TGCTCCCCTTGCAAATTCTT+TGG 0.271478 1_2:-57693178 None:intergenic
AATACTTGTTTATTGCTTGC+AGG 0.295746 1_2:+57693948 Msa0079720:CDS
CCCAATGTTATAAAGTTAGA+AGG 0.299235 1_2:+57693727 Msa0079720:CDS
TCTGTACGACCAGGCATAAT+TGG 0.312694 1_2:-57694364 None:intergenic
GTTTGTGGGGAAGCCCTTAA+TGG 0.320040 1_2:+57693235 Msa0079720:CDS
GATCCAATCTTCGCAGTATA+AGG 0.323490 1_2:-57693702 None:intergenic
AGGTTAGAGTTGAGGTGAAA+TGG 0.335384 1_2:+57692901 Msa0079720:exon
CCTTCTAACTTTATAACATT+GGG 0.357456 1_2:-57693727 None:intergenic
ACAGTAACAGTAATTGAAAC+AGG 0.359780 1_2:-57692434 None:intergenic
CGGCCTCCTGAGTTGCTTCT+CGG 0.368533 1_2:+57694268 Msa0079720:CDS
GATCTTCTTCTCTCACCCTT+TGG 0.387294 1_2:-57693127 None:intergenic
CCGCGGAATCCACCCATTAA+GGG 0.389822 1_2:-57693248 None:intergenic
ATGGTGTGGGTGTGGACCTT+TGG 0.391860 1_2:+57694302 Msa0079720:CDS
AGGAGAAGAGTGACGGTGAT+GGG 0.392083 1_2:+57693095 Msa0079720:CDS
GGCTCTGTGAACTTGATGTC+AGG 0.392102 1_2:-57693832 None:intergenic
CTTGGCTTACGGCAGTTTGT+GGG 0.393112 1_2:+57693221 Msa0079720:CDS
GGGTTACTCAACCTCGGGTT+TGG 0.396893 1_2:-57693154 None:intergenic
ATACTCAAAATTGCCGACTT+TGG 0.403417 1_2:+57694178 Msa0079720:CDS
TCTTGGCTTACGGCAGTTTG+TGG 0.413956 1_2:+57693220 Msa0079720:CDS
TTTGTGGGGAAGCCCTTAAT+GGG 0.416095 1_2:+57693236 Msa0079720:CDS
ACCTTCTAACTTTATAACAT+TGG 0.430211 1_2:-57693728 None:intergenic
GATCCTTATACTGCGAAGAT+TGG 0.430364 1_2:+57693699 Msa0079720:CDS
TCCCCTTGCAAATTCTTTGG+CGG 0.434058 1_2:-57693175 None:intergenic
AAAGCTAAAGATTTAATAAC+GGG 0.439830 1_2:+57693604 Msa0079720:CDS
CCCCTTGCAAATTCTTTGGC+GGG 0.442091 1_2:-57693174 None:intergenic
GAGAAGGAATAGAAGAAGGA+TGG 0.443822 1_2:-57692336 None:intergenic
CAATACCCGATTCCACTTCT+CGG 0.447005 1_2:-57692937 None:intergenic
TGAGAAGGTGAAGAAGGTTA+AGG 0.455804 1_2:+57693066 Msa0079720:CDS
GAGGAGAAGAGTGACGGTGA+TGG 0.459280 1_2:+57693094 Msa0079720:CDS
GTATCTGGTGTTTGAATACA+TGG 0.459976 1_2:+57693780 Msa0079720:CDS
TAGCAGCTGGATGGCCGTCT+TGG 0.465179 1_2:+57693203 Msa0079720:CDS
TGTCTGATGATGTTACTGTT+TGG 0.465481 1_2:-57692385 None:intergenic
TGATGGGGTTCAACGGCCAA+AGG 0.467491 1_2:+57693111 Msa0079720:CDS
TTGTTGCATTGAAGAAGGTT+CGG 0.467512 1_2:+57693632 Msa0079720:CDS
ACCCGAGAGTGTAAAATTCA+TGG 0.469557 1_2:+57693669 Msa0079720:CDS
CCCTTTGTTTAGATTGGTCA+AGG 0.471799 1_2:+57693562 Msa0079720:intron
TAAGATTGTTGCATTGAAGA+AGG 0.472451 1_2:+57693627 Msa0079720:CDS
TAACTCTCCTAAAATGCAAC+CGG 0.472960 1_2:-57694329 None:intergenic
GGTTAGAGTTGAGGTGAAAT+GGG 0.475545 1_2:+57692902 Msa0079720:exon
GACATCATTCGCTTATGTAA+AGG 0.487065 1_2:-57692868 None:intergenic
AGCTGAGGGAAGTGTGGTAG+AGG 0.487491 1_2:+57693033 Msa0079720:CDS
CTCAGGAGGCCGGTACCAAA+GGG 0.488063 1_2:-57694257 None:intergenic
GGTGTGGACCTTTGGAGTGC+CGG 0.490162 1_2:+57694310 Msa0079720:CDS
AGAAGGAATAGAAGAAGGAT+GGG 0.490175 1_2:-57692335 None:intergenic
TTGGCGGGTTACTCAACCTC+GGG 0.493480 1_2:-57693159 None:intergenic
TACATTTGAGAAAATAGATA+AGG 0.494421 1_2:+57693279 Msa0079720:CDS
CATCAAGTTCACAGAGCCTC+AGG 0.501560 1_2:+57693837 Msa0079720:CDS
TGGATGGCCGTCTTGGCTTA+CGG 0.501580 1_2:+57693210 Msa0079720:CDS
CTAATCGTGTAGTTACCCTT+TGG 0.503992 1_2:+57694242 Msa0079720:CDS
CAAAGAGAAGGAATAGAAGA+AGG 0.504506 1_2:-57692340 None:intergenic
AATCTTCTGATTGACAATGA+AGG 0.506525 1_2:+57694154 Msa0079720:CDS
GAATGGTGAGAAGGTGAAGA+AGG 0.508014 1_2:+57693060 Msa0079720:CDS
CAAGGGGAGCAAGTAGCAGC+TGG 0.514666 1_2:+57693190 Msa0079720:CDS
CAAAGCTAAAGATTTAATAA+CGG 0.515120 1_2:+57693603 Msa0079720:CDS
GTAACTACACGATTAGTCAT+AGG 0.515667 1_2:-57694235 None:intergenic
AATTAGCCGAGAAGTGGAAT+CGG 0.517081 1_2:+57692931 Msa0079720:CDS
ACTCAGGAGGCCGGTACCAA+AGG 0.517898 1_2:-57694258 None:intergenic
TCTCTTTGTCTCTTAAAAGA+CGG 0.521575 1_2:+57692355 Msa0079720:five_prime_UTR
GTGTAGTTACCCTTTGGTAC+CGG 0.523575 1_2:+57694248 Msa0079720:CDS
GTCATAGGATGTCTGCGGGT+TGG 0.524259 1_2:-57694220 None:intergenic
GAAGAAGGTTAAGGAGAAGG+AGG 0.529188 1_2:+57693075 Msa0079720:CDS
GGTGAAGAAGGTTAAGGAGA+AGG 0.529250 1_2:+57693072 Msa0079720:CDS
GGTTTGACTTTGTTGTAAGT+AGG 0.529839 1_2:+57692293 None:intergenic
AATGTCATGGAGTTTGTATC+TGG 0.529876 1_2:+57693765 Msa0079720:CDS
GTGGGGAAGCCCTTAATGGG+TGG 0.533334 1_2:+57693239 Msa0079720:CDS
CACAGATTATGGTGTGGGTG+TGG 0.537954 1_2:+57694294 Msa0079720:CDS
CCCTTAATGGGTGGATTCCG+CGG 0.539732 1_2:+57693248 Msa0079720:CDS
TAATGGGTGGATTCCGCGGA+AGG 0.542038 1_2:+57693252 Msa0079720:CDS
CAGGGATTTCAACGAAGAAG+AGG 0.543279 1_2:-57692415 None:intergenic
GATGGGGTTCAACGGCCAAA+GGG 0.543988 1_2:+57693112 Msa0079720:CDS
TACATGGTACATGATTTAGC+TGG 0.549020 1_2:+57693796 Msa0079720:CDS
GGAAATGAAGGTTAGAGTTG+AGG 0.549666 1_2:+57692893 Msa0079720:five_prime_UTR
GAATGATGTCGAGGAAATGA+AGG 0.551594 1_2:+57692881 Msa0079720:five_prime_UTR
TTTGGCGGGTTACTCAACCT+CGG 0.552620 1_2:-57693160 None:intergenic
CGAGAGCTGAGTCGAGCAAG+AGG 0.553834 1_2:+57692987 Msa0079720:CDS
AGAGGTTCAGAATGGTGAGA+AGG 0.554296 1_2:+57693051 Msa0079720:CDS
ATTAGCCGAGAAGTGGAATC+GGG 0.555761 1_2:+57692932 Msa0079720:CDS
GGGTATTGTGTCTGAGGTGA+AGG 0.558967 1_2:+57692952 Msa0079720:CDS
GTGTCCACAAGTAGAGCTGA+GGG 0.559946 1_2:+57693019 Msa0079720:CDS
AACCCGCCAAAGAATTTGCA+AGG 0.562913 1_2:+57693172 Msa0079720:CDS
GAATAGAAGAAGGATGGGAA+TGG 0.565995 1_2:-57692330 None:intergenic
GAGAAGGAGGAGAAGAGTGA+CGG 0.568473 1_2:+57693088 Msa0079720:CDS
GCTCTGTGAACTTGATGTCA+GGG 0.570313 1_2:-57693831 None:intergenic
AAATGCAACCGGCACTCCAA+AGG 0.576009 1_2:-57694318 None:intergenic
TATGGGAAACCAATTATGCC+TGG 0.577243 1_2:+57694355 Msa0079720:CDS
GTGGCACCGAGAAGCAACTC+AGG 0.577827 1_2:-57694274 None:intergenic
TTGTGTAATTAGCCGAGAAG+TGG 0.580332 1_2:+57692925 Msa0079720:CDS
GGGAGCAAGTAGCAGCTGGA+TGG 0.587449 1_2:+57693194 Msa0079720:CDS
AAGTAGAGCTGAGGGAAGTG+TGG 0.587570 1_2:+57693027 Msa0079720:CDS
CGAGAAGCAACTCAGGAGGC+CGG 0.590129 1_2:-57694267 None:intergenic
TAGTTACATCTAGAATGTCA+TGG 0.596763 1_2:+57693752 Msa0079720:CDS
CAAACTGCCGTAAGCCAAGA+CGG 0.597463 1_2:-57693217 None:intergenic
GTGACGGTGATGGGGTTCAA+CGG 0.597600 1_2:+57693104 Msa0079720:CDS
AGTGTCCACAAGTAGAGCTG+AGG 0.599639 1_2:+57693018 Msa0079720:CDS
ATTAGTCATAGGATGTCTGC+GGG 0.599901 1_2:-57694224 None:intergenic
ACTTCCCTCAGCTCTACTTG+TGG 0.609529 1_2:-57693023 None:intergenic
GAAAGAGGCAAGTCCAAAGT+CGG 0.610678 1_2:-57694191 None:intergenic
GCGGGTTGGATCAAAGAAAG+AGG 0.610771 1_2:-57694206 None:intergenic
GGAGAAGAGTGACGGTGATG+GGG 0.612821 1_2:+57693096 Msa0079720:CDS
TTGGCTTACGGCAGTTTGTG+GGG 0.615684 1_2:+57693222 Msa0079720:CDS
GGTGCCACAGATTATGGTGT+GGG 0.617329 1_2:+57694289 Msa0079720:CDS
CAGTAACAGTAATTGAAACA+GGG 0.619077 1_2:-57692433 None:intergenic
ACCCGCCAAAGAATTTGCAA+GGG 0.626013 1_2:+57693173 Msa0079720:CDS
GAGAGCTGAGTCGAGCAAGA+GGG 0.628759 1_2:+57692988 Msa0079720:CDS
TACATAAGCGAATGATGTCG+AGG 0.631381 1_2:+57692872 Msa0079720:five_prime_UTR
AGTGTGGTAGAGGTTCAGAA+TGG 0.631575 1_2:+57693043 Msa0079720:CDS
CGGTGCCACAGATTATGGTG+TGG 0.642463 1_2:+57694288 Msa0079720:CDS
TCAAATGTATCAGCCTTCCG+CGG 0.651411 1_2:-57693265 None:intergenic
ATTATCACCTCTGTACGACC+AGG 0.655268 1_2:-57694373 None:intergenic
GATTAGTCATAGGATGTCTG+CGG 0.657949 1_2:-57694225 None:intergenic
GCACCGAGAAGCAACTCAGG+AGG 0.667905 1_2:-57694271 None:intergenic
CCCGCCAAAGAATTTGCAAG+GGG 0.668659 1_2:+57693174 Msa0079720:CDS
AATTATGCCTGGTCGTACAG+AGG 0.669314 1_2:+57694366 Msa0079720:CDS
CACACCCACACCATAATCTG+TGG 0.672133 1_2:-57694293 None:intergenic
GGAATCGGGTATTGTGTCTG+AGG 0.692219 1_2:+57692946 Msa0079720:CDS
GAAGATCGAAGCCAAACCCG+AGG 0.708426 1_2:+57693143 Msa0079720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAGATTAGATTGATA+CGG + chr1_2:57692820-57692839 Msa0079720:intron 15.0%
!!! TTTTTTAGATTAGATTGATA+CGG + chr1_2:57692820-57692839 Msa0079720:intron 15.0%
!! TACATTTGAGAAAATAGATA+AGG + chr1_2:57693279-57693298 Msa0079720:CDS 20.0%
!! CAAAGCTAAAGATTTAATAA+CGG + chr1_2:57693603-57693622 Msa0079720:CDS 20.0%
!! AAAGCTAAAGATTTAATAAC+GGG + chr1_2:57693604-57693623 Msa0079720:CDS 20.0%
!! GAAAAGAAATAGTTATCATT+TGG + chr1_2:57693888-57693907 Msa0079720:intron 20.0%
!! TACATTTGAGAAAATAGATA+AGG + chr1_2:57693279-57693298 Msa0079720:CDS 20.0%
!! CAAAGCTAAAGATTTAATAA+CGG + chr1_2:57693603-57693622 Msa0079720:CDS 20.0%
!! AAAGCTAAAGATTTAATAAC+GGG + chr1_2:57693604-57693623 Msa0079720:CDS 20.0%
!! GAAAAGAAATAGTTATCATT+TGG + chr1_2:57693888-57693907 Msa0079720:intron 20.0%
! AATGGAAAAAAACAAGAAGA+GGG - chr1_2:57692466-57692485 None:intergenic 25.0%
! AAATGGAAAAAAACAAGAAG+AGG - chr1_2:57692467-57692486 None:intergenic 25.0%
! ATGGGTTTAAAAAACAAAAG+GGG - chr1_2:57692499-57692518 None:intergenic 25.0%
!! GATGGGTTTAAAAAACAAAA+GGG - chr1_2:57692500-57692519 None:intergenic 25.0%
!!! TGATGGGTTTAAAAAACAAA+AGG - chr1_2:57692501-57692520 None:intergenic 25.0%
!!! AATATTTTTTTGCACGTGAT+GGG - chr1_2:57692517-57692536 None:intergenic 25.0%
!!! TAATATTTTTTTGCACGTGA+TGG - chr1_2:57692518-57692537 None:intergenic 25.0%
!!! TCAATTCCAATTTGGTTTTT+AGG + chr1_2:57692601-57692620 Msa0079720:intron 25.0%
! AACAAACCTAAAAACCAAAT+TGG - chr1_2:57692610-57692629 None:intergenic 25.0%
! TGTAGTAAGATTAGCAAATT+AGG + chr1_2:57692732-57692751 Msa0079720:intron 25.0%
! GTAGTAAGATTAGCAAATTA+GGG + chr1_2:57692733-57692752 Msa0079720:intron 25.0%
! TAGTAAGATTAGCAAATTAG+GGG + chr1_2:57692734-57692753 Msa0079720:intron 25.0%
! TTAGGGGTGAAAAATTATAA+AGG + chr1_2:57692750-57692769 Msa0079720:intron 25.0%
! TAGGGGTGAAAAATTATAAA+GGG + chr1_2:57692751-57692770 Msa0079720:intron 25.0%
!! TGTAGTGAATTTTGTAATCA+TGG + chr1_2:57692785-57692804 Msa0079720:intron 25.0%
! TTTGAGAAAATAGATAAGGT+TGG + chr1_2:57693283-57693302 Msa0079720:intron 25.0%
!!! ATTTTTCCCTTTGTTTAGAT+TGG + chr1_2:57693556-57693575 Msa0079720:intron 25.0%
! CCTTCTAACTTTATAACATT+GGG - chr1_2:57693730-57693749 None:intergenic 25.0%
! ACCTTCTAACTTTATAACAT+TGG - chr1_2:57693731-57693750 None:intergenic 25.0%
! TCAAATTATTAAAGCAAACC+TGG - chr1_2:57693868-57693887 None:intergenic 25.0%
!!! ATTTTAGGAGAGTTATTGTA+TGG + chr1_2:57694337-57694356 Msa0079720:CDS 25.0%
!!! TTTTAGGAGAGTTATTGTAT+GGG + chr1_2:57694338-57694357 Msa0079720:CDS 25.0%
! AATGGAAAAAAACAAGAAGA+GGG - chr1_2:57692466-57692485 None:intergenic 25.0%
! AAATGGAAAAAAACAAGAAG+AGG - chr1_2:57692467-57692486 None:intergenic 25.0%
! ATGGGTTTAAAAAACAAAAG+GGG - chr1_2:57692499-57692518 None:intergenic 25.0%
!! GATGGGTTTAAAAAACAAAA+GGG - chr1_2:57692500-57692519 None:intergenic 25.0%
!!! TGATGGGTTTAAAAAACAAA+AGG - chr1_2:57692501-57692520 None:intergenic 25.0%
!!! AATATTTTTTTGCACGTGAT+GGG - chr1_2:57692517-57692536 None:intergenic 25.0%
!!! TAATATTTTTTTGCACGTGA+TGG - chr1_2:57692518-57692537 None:intergenic 25.0%
!!! TCAATTCCAATTTGGTTTTT+AGG + chr1_2:57692601-57692620 Msa0079720:intron 25.0%
! AACAAACCTAAAAACCAAAT+TGG - chr1_2:57692610-57692629 None:intergenic 25.0%
! TGTAGTAAGATTAGCAAATT+AGG + chr1_2:57692732-57692751 Msa0079720:intron 25.0%
! GTAGTAAGATTAGCAAATTA+GGG + chr1_2:57692733-57692752 Msa0079720:intron 25.0%
! TAGTAAGATTAGCAAATTAG+GGG + chr1_2:57692734-57692753 Msa0079720:intron 25.0%
! TTAGGGGTGAAAAATTATAA+AGG + chr1_2:57692750-57692769 Msa0079720:intron 25.0%
! TAGGGGTGAAAAATTATAAA+GGG + chr1_2:57692751-57692770 Msa0079720:intron 25.0%
!! TGTAGTGAATTTTGTAATCA+TGG + chr1_2:57692785-57692804 Msa0079720:intron 25.0%
! TTTGAGAAAATAGATAAGGT+TGG + chr1_2:57693283-57693302 Msa0079720:intron 25.0%
!!! ATTTTTCCCTTTGTTTAGAT+TGG + chr1_2:57693556-57693575 Msa0079720:intron 25.0%
! CCTTCTAACTTTATAACATT+GGG - chr1_2:57693730-57693749 None:intergenic 25.0%
! ACCTTCTAACTTTATAACAT+TGG - chr1_2:57693731-57693750 None:intergenic 25.0%
! TCAAATTATTAAAGCAAACC+TGG - chr1_2:57693868-57693887 None:intergenic 25.0%
!!! ATTTTAGGAGAGTTATTGTA+TGG + chr1_2:57694337-57694356 Msa0079720:CDS 25.0%
!!! TTTTAGGAGAGTTATTGTAT+GGG + chr1_2:57694338-57694357 Msa0079720:CDS 25.0%
!! TCTTTTAAGAGACAAAGAGA+AGG - chr1_2:57692355-57692374 None:intergenic 30.0%
TCTCTTTGTCTCTTAAAAGA+CGG + chr1_2:57692355-57692374 Msa0079720:five_prime_UTR 30.0%
CAGTAACAGTAATTGAAACA+GGG - chr1_2:57692436-57692455 None:intergenic 30.0%
ACAGTAACAGTAATTGAAAC+AGG - chr1_2:57692437-57692456 None:intergenic 30.0%
AAAAGGGGCAAAAACAAAAA+TGG - chr1_2:57692484-57692503 None:intergenic 30.0%
ATCTCAACTCAATTCCAATT+TGG + chr1_2:57692593-57692612 Msa0079720:intron 30.0%
! TTTAGACTAGTTGTTCATAC+TGG - chr1_2:57692655-57692674 None:intergenic 30.0%
! AGTGAATTTTGTAATCATGG+TGG + chr1_2:57692788-57692807 Msa0079720:intron 30.0%
TGATCGTTCGTGATTAAAAA+CGG + chr1_2:57692843-57692862 Msa0079720:five_prime_UTR 30.0%
TTGTTGGAATGATCAATTTG+TGG + chr1_2:57693428-57693447 Msa0079720:intron 30.0%
TGTTGGAATGATCAATTTGT+GGG + chr1_2:57693429-57693448 Msa0079720:intron 30.0%
AGAGATTCTACACAATTACT+TGG - chr1_2:57693477-57693496 None:intergenic 30.0%
TAAGATTGTTGCATTGAAGA+AGG + chr1_2:57693627-57693646 Msa0079720:CDS 30.0%
CCCAATGTTATAAAGTTAGA+AGG + chr1_2:57693727-57693746 Msa0079720:CDS 30.0%
! TAGTTACATCTAGAATGTCA+TGG + chr1_2:57693752-57693771 Msa0079720:CDS 30.0%
GCAAGCAATAAACAAGTATT+TGG - chr1_2:57693948-57693967 None:intergenic 30.0%
AATACTTGTTTATTGCTTGC+AGG + chr1_2:57693948-57693967 Msa0079720:CDS 30.0%
GATTTGATCCTTTAATATCG+CGG - chr1_2:57694138-57694157 None:intergenic 30.0%
AATCTTCTGATTGACAATGA+AGG + chr1_2:57694154-57694173 Msa0079720:CDS 30.0%
!! TCTTTTAAGAGACAAAGAGA+AGG - chr1_2:57692355-57692374 None:intergenic 30.0%
TCTCTTTGTCTCTTAAAAGA+CGG + chr1_2:57692355-57692374 Msa0079720:five_prime_UTR 30.0%
CAGTAACAGTAATTGAAACA+GGG - chr1_2:57692436-57692455 None:intergenic 30.0%
ACAGTAACAGTAATTGAAAC+AGG - chr1_2:57692437-57692456 None:intergenic 30.0%
AAAAGGGGCAAAAACAAAAA+TGG - chr1_2:57692484-57692503 None:intergenic 30.0%
ATCTCAACTCAATTCCAATT+TGG + chr1_2:57692593-57692612 Msa0079720:intron 30.0%
! TTTAGACTAGTTGTTCATAC+TGG - chr1_2:57692655-57692674 None:intergenic 30.0%
! AGTGAATTTTGTAATCATGG+TGG + chr1_2:57692788-57692807 Msa0079720:intron 30.0%
TGATCGTTCGTGATTAAAAA+CGG + chr1_2:57692843-57692862 Msa0079720:five_prime_UTR 30.0%
TTGTTGGAATGATCAATTTG+TGG + chr1_2:57693428-57693447 Msa0079720:intron 30.0%
TGTTGGAATGATCAATTTGT+GGG + chr1_2:57693429-57693448 Msa0079720:intron 30.0%
AGAGATTCTACACAATTACT+TGG - chr1_2:57693477-57693496 None:intergenic 30.0%
TAAGATTGTTGCATTGAAGA+AGG + chr1_2:57693627-57693646 Msa0079720:CDS 30.0%
CCCAATGTTATAAAGTTAGA+AGG + chr1_2:57693727-57693746 Msa0079720:CDS 30.0%
! TAGTTACATCTAGAATGTCA+TGG + chr1_2:57693752-57693771 Msa0079720:CDS 30.0%
GCAAGCAATAAACAAGTATT+TGG - chr1_2:57693948-57693967 None:intergenic 30.0%
AATACTTGTTTATTGCTTGC+AGG + chr1_2:57693948-57693967 Msa0079720:CDS 30.0%
GATTTGATCCTTTAATATCG+CGG - chr1_2:57694138-57694157 None:intergenic 30.0%
AATCTTCTGATTGACAATGA+AGG + chr1_2:57694154-57694173 Msa0079720:CDS 30.0%
AGAAGGAATAGAAGAAGGAT+GGG - chr1_2:57692338-57692357 None:intergenic 35.0%
CAAAGAGAAGGAATAGAAGA+AGG - chr1_2:57692343-57692362 None:intergenic 35.0%
! TGTCTGATGATGTTACTGTT+TGG - chr1_2:57692388-57692407 None:intergenic 35.0%
GATTCAGTGATCTATCAACA+AGG - chr1_2:57692561-57692580 None:intergenic 35.0%
GACATCATTCGCTTATGTAA+AGG - chr1_2:57692871-57692890 None:intergenic 35.0%
CGAAATTTGTGATGCATTGT+TGG + chr1_2:57693412-57693431 Msa0079720:intron 35.0%
CCTTGACCAATCTAAACAAA+GGG - chr1_2:57693565-57693584 None:intergenic 35.0%
TCCTTGACCAATCTAAACAA+AGG - chr1_2:57693566-57693585 None:intergenic 35.0%
TTGTTGCATTGAAGAAGGTT+CGG + chr1_2:57693632-57693651 Msa0079720:CDS 35.0%
! GAAGGTTCGGTTTGATAATT+TGG + chr1_2:57693645-57693664 Msa0079720:CDS 35.0%
! AGCCATGAATTTTACACTCT+CGG - chr1_2:57693674-57693693 None:intergenic 35.0%
AATGTCATGGAGTTTGTATC+TGG + chr1_2:57693765-57693784 Msa0079720:CDS 35.0%
GTATCTGGTGTTTGAATACA+TGG + chr1_2:57693780-57693799 Msa0079720:CDS 35.0%
TACATGGTACATGATTTAGC+TGG + chr1_2:57693796-57693815 Msa0079720:CDS 35.0%
TATATGCATCAACTGCTATC+AGG + chr1_2:57693979-57693998 Msa0079720:intron 35.0%
!! ATACTCAAAATTGCCGACTT+TGG + chr1_2:57694178-57694197 Msa0079720:CDS 35.0%
! GTAACTACACGATTAGTCAT+AGG - chr1_2:57694238-57694257 None:intergenic 35.0%
TAACTCTCCTAAAATGCAAC+CGG - chr1_2:57694332-57694351 None:intergenic 35.0%
AGAAGGAATAGAAGAAGGAT+GGG - chr1_2:57692338-57692357 None:intergenic 35.0%
CAAAGAGAAGGAATAGAAGA+AGG - chr1_2:57692343-57692362 None:intergenic 35.0%
! TGTCTGATGATGTTACTGTT+TGG - chr1_2:57692388-57692407 None:intergenic 35.0%
GATTCAGTGATCTATCAACA+AGG - chr1_2:57692561-57692580 None:intergenic 35.0%
GACATCATTCGCTTATGTAA+AGG - chr1_2:57692871-57692890 None:intergenic 35.0%
CGAAATTTGTGATGCATTGT+TGG + chr1_2:57693412-57693431 Msa0079720:intron 35.0%
CCTTGACCAATCTAAACAAA+GGG - chr1_2:57693565-57693584 None:intergenic 35.0%
TCCTTGACCAATCTAAACAA+AGG - chr1_2:57693566-57693585 None:intergenic 35.0%
TTGTTGCATTGAAGAAGGTT+CGG + chr1_2:57693632-57693651 Msa0079720:CDS 35.0%
! GAAGGTTCGGTTTGATAATT+TGG + chr1_2:57693645-57693664 Msa0079720:CDS 35.0%
! AGCCATGAATTTTACACTCT+CGG - chr1_2:57693674-57693693 None:intergenic 35.0%
AATGTCATGGAGTTTGTATC+TGG + chr1_2:57693765-57693784 Msa0079720:CDS 35.0%
GTATCTGGTGTTTGAATACA+TGG + chr1_2:57693780-57693799 Msa0079720:CDS 35.0%
TACATGGTACATGATTTAGC+TGG + chr1_2:57693796-57693815 Msa0079720:CDS 35.0%
TATATGCATCAACTGCTATC+AGG + chr1_2:57693979-57693998 Msa0079720:intron 35.0%
!! ATACTCAAAATTGCCGACTT+TGG + chr1_2:57694178-57694197 Msa0079720:CDS 35.0%
! GTAACTACACGATTAGTCAT+AGG - chr1_2:57694238-57694257 None:intergenic 35.0%
TAACTCTCCTAAAATGCAAC+CGG - chr1_2:57694332-57694351 None:intergenic 35.0%
GAATAGAAGAAGGATGGGAA+TGG - chr1_2:57692333-57692352 None:intergenic 40.0%
GAGAAGGAATAGAAGAAGGA+TGG - chr1_2:57692339-57692358 None:intergenic 40.0%
TTTATGCTCGTGCATCTTTG+TGG + chr1_2:57692628-57692647 Msa0079720:intron 40.0%
TTATGCTCGTGCATCTTTGT+GGG + chr1_2:57692629-57692648 Msa0079720:intron 40.0%
TACATAAGCGAATGATGTCG+AGG + chr1_2:57692872-57692891 Msa0079720:five_prime_UTR 40.0%
GAATGATGTCGAGGAAATGA+AGG + chr1_2:57692881-57692900 Msa0079720:five_prime_UTR 40.0%
GGAAATGAAGGTTAGAGTTG+AGG + chr1_2:57692893-57692912 Msa0079720:five_prime_UTR 40.0%
AGGTTAGAGTTGAGGTGAAA+TGG + chr1_2:57692901-57692920 Msa0079720:exon 40.0%
GGTTAGAGTTGAGGTGAAAT+GGG + chr1_2:57692902-57692921 Msa0079720:exon 40.0%
TTGTGTAATTAGCCGAGAAG+TGG + chr1_2:57692925-57692944 Msa0079720:CDS 40.0%
AATTAGCCGAGAAGTGGAAT+CGG + chr1_2:57692931-57692950 Msa0079720:CDS 40.0%
TGAGAAGGTGAAGAAGGTTA+AGG + chr1_2:57693066-57693085 Msa0079720:CDS 40.0%
GAATGATCAATTTGTGGGCA+GGG + chr1_2:57693434-57693453 Msa0079720:intron 40.0%
! CCCTTTGTTTAGATTGGTCA+AGG + chr1_2:57693562-57693581 Msa0079720:intron 40.0%
! ACCCGAGAGTGTAAAATTCA+TGG + chr1_2:57693669-57693688 Msa0079720:CDS 40.0%
! GCCATGAATTTTACACTCTC+GGG - chr1_2:57693673-57693692 None:intergenic 40.0%
GATCCTTATACTGCGAAGAT+TGG + chr1_2:57693699-57693718 Msa0079720:CDS 40.0%
GATCCAATCTTCGCAGTATA+AGG - chr1_2:57693705-57693724 None:intergenic 40.0%
GTACTTCACCGCGATATTAA+AGG + chr1_2:57694127-57694146 Msa0079720:intron 40.0%
ATTAGTCATAGGATGTCTGC+GGG - chr1_2:57694227-57694246 None:intergenic 40.0%
! GATTAGTCATAGGATGTCTG+CGG - chr1_2:57694228-57694247 None:intergenic 40.0%
CTAATCGTGTAGTTACCCTT+TGG + chr1_2:57694242-57694261 Msa0079720:CDS 40.0%
TATGGGAAACCAATTATGCC+TGG + chr1_2:57694355-57694374 Msa0079720:CDS 40.0%
GAATAGAAGAAGGATGGGAA+TGG - chr1_2:57692333-57692352 None:intergenic 40.0%
GAGAAGGAATAGAAGAAGGA+TGG - chr1_2:57692339-57692358 None:intergenic 40.0%
TTTATGCTCGTGCATCTTTG+TGG + chr1_2:57692628-57692647 Msa0079720:intron 40.0%
TTATGCTCGTGCATCTTTGT+GGG + chr1_2:57692629-57692648 Msa0079720:intron 40.0%
TACATAAGCGAATGATGTCG+AGG + chr1_2:57692872-57692891 Msa0079720:five_prime_UTR 40.0%
GAATGATGTCGAGGAAATGA+AGG + chr1_2:57692881-57692900 Msa0079720:five_prime_UTR 40.0%
GGAAATGAAGGTTAGAGTTG+AGG + chr1_2:57692893-57692912 Msa0079720:five_prime_UTR 40.0%
AGGTTAGAGTTGAGGTGAAA+TGG + chr1_2:57692901-57692920 Msa0079720:exon 40.0%
GGTTAGAGTTGAGGTGAAAT+GGG + chr1_2:57692902-57692921 Msa0079720:exon 40.0%
TTGTGTAATTAGCCGAGAAG+TGG + chr1_2:57692925-57692944 Msa0079720:CDS 40.0%
AATTAGCCGAGAAGTGGAAT+CGG + chr1_2:57692931-57692950 Msa0079720:CDS 40.0%
TGAGAAGGTGAAGAAGGTTA+AGG + chr1_2:57693066-57693085 Msa0079720:CDS 40.0%
GAATGATCAATTTGTGGGCA+GGG + chr1_2:57693434-57693453 Msa0079720:intron 40.0%
! CCCTTTGTTTAGATTGGTCA+AGG + chr1_2:57693562-57693581 Msa0079720:intron 40.0%
! ACCCGAGAGTGTAAAATTCA+TGG + chr1_2:57693669-57693688 Msa0079720:CDS 40.0%
! GCCATGAATTTTACACTCTC+GGG - chr1_2:57693673-57693692 None:intergenic 40.0%
GATCCTTATACTGCGAAGAT+TGG + chr1_2:57693699-57693718 Msa0079720:CDS 40.0%
GATCCAATCTTCGCAGTATA+AGG - chr1_2:57693705-57693724 None:intergenic 40.0%
GTACTTCACCGCGATATTAA+AGG + chr1_2:57694127-57694146 Msa0079720:intron 40.0%
ATTAGTCATAGGATGTCTGC+GGG - chr1_2:57694227-57694246 None:intergenic 40.0%
! GATTAGTCATAGGATGTCTG+CGG - chr1_2:57694228-57694247 None:intergenic 40.0%
CTAATCGTGTAGTTACCCTT+TGG + chr1_2:57694242-57694261 Msa0079720:CDS 40.0%
TATGGGAAACCAATTATGCC+TGG + chr1_2:57694355-57694374 Msa0079720:CDS 40.0%
CAGGGATTTCAACGAAGAAG+AGG - chr1_2:57692418-57692437 None:intergenic 45.0%
ATTAGCCGAGAAGTGGAATC+GGG + chr1_2:57692932-57692951 Msa0079720:CDS 45.0%
CAATACCCGATTCCACTTCT+CGG - chr1_2:57692940-57692959 None:intergenic 45.0%
AGTGTGGTAGAGGTTCAGAA+TGG + chr1_2:57693043-57693062 Msa0079720:CDS 45.0%
AGAGGTTCAGAATGGTGAGA+AGG + chr1_2:57693051-57693070 Msa0079720:CDS 45.0%
GAATGGTGAGAAGGTGAAGA+AGG + chr1_2:57693060-57693079 Msa0079720:CDS 45.0%
GGTGAAGAAGGTTAAGGAGA+AGG + chr1_2:57693072-57693091 Msa0079720:CDS 45.0%
GAAGAAGGTTAAGGAGAAGG+AGG + chr1_2:57693075-57693094 Msa0079720:CDS 45.0%
GATCTTCTTCTCTCACCCTT+TGG - chr1_2:57693130-57693149 None:intergenic 45.0%
AACCCGCCAAAGAATTTGCA+AGG + chr1_2:57693172-57693191 Msa0079720:CDS 45.0%
ACCCGCCAAAGAATTTGCAA+GGG + chr1_2:57693173-57693192 Msa0079720:CDS 45.0%
TCCCCTTGCAAATTCTTTGG+CGG - chr1_2:57693178-57693197 None:intergenic 45.0%
TGCTCCCCTTGCAAATTCTT+TGG - chr1_2:57693181-57693200 None:intergenic 45.0%
TTTGTGGGGAAGCCCTTAAT+GGG + chr1_2:57693236-57693255 Msa0079720:CDS 45.0%
TCAAATGTATCAGCCTTCCG+CGG - chr1_2:57693268-57693287 None:intergenic 45.0%
! GTGCATGTGATTTGTAGCTG+AGG + chr1_2:57693350-57693369 Msa0079720:intron 45.0%
GGAATGATCAATTTGTGGGC+AGG + chr1_2:57693433-57693452 Msa0079720:intron 45.0%
GCTCTGTGAACTTGATGTCA+GGG - chr1_2:57693834-57693853 None:intergenic 45.0%
GAAAGAGGCAAGTCCAAAGT+CGG - chr1_2:57694194-57694213 None:intergenic 45.0%
GTGTAGTTACCCTTTGGTAC+CGG + chr1_2:57694248-57694267 Msa0079720:CDS 45.0%
TCTGTACGACCAGGCATAAT+TGG - chr1_2:57694367-57694386 None:intergenic 45.0%
AATTATGCCTGGTCGTACAG+AGG + chr1_2:57694366-57694385 Msa0079720:CDS 45.0%
ATTATCACCTCTGTACGACC+AGG - chr1_2:57694376-57694395 None:intergenic 45.0%
CAGGGATTTCAACGAAGAAG+AGG - chr1_2:57692418-57692437 None:intergenic 45.0%
ATTAGCCGAGAAGTGGAATC+GGG + chr1_2:57692932-57692951 Msa0079720:CDS 45.0%
CAATACCCGATTCCACTTCT+CGG - chr1_2:57692940-57692959 None:intergenic 45.0%
AGTGTGGTAGAGGTTCAGAA+TGG + chr1_2:57693043-57693062 Msa0079720:CDS 45.0%
AGAGGTTCAGAATGGTGAGA+AGG + chr1_2:57693051-57693070 Msa0079720:CDS 45.0%
GAATGGTGAGAAGGTGAAGA+AGG + chr1_2:57693060-57693079 Msa0079720:CDS 45.0%
GGTGAAGAAGGTTAAGGAGA+AGG + chr1_2:57693072-57693091 Msa0079720:CDS 45.0%
GAAGAAGGTTAAGGAGAAGG+AGG + chr1_2:57693075-57693094 Msa0079720:CDS 45.0%
GATCTTCTTCTCTCACCCTT+TGG - chr1_2:57693130-57693149 None:intergenic 45.0%
AACCCGCCAAAGAATTTGCA+AGG + chr1_2:57693172-57693191 Msa0079720:CDS 45.0%
ACCCGCCAAAGAATTTGCAA+GGG + chr1_2:57693173-57693192 Msa0079720:CDS 45.0%
TCCCCTTGCAAATTCTTTGG+CGG - chr1_2:57693178-57693197 None:intergenic 45.0%
TGCTCCCCTTGCAAATTCTT+TGG - chr1_2:57693181-57693200 None:intergenic 45.0%
TTTGTGGGGAAGCCCTTAAT+GGG + chr1_2:57693236-57693255 Msa0079720:CDS 45.0%
TCAAATGTATCAGCCTTCCG+CGG - chr1_2:57693268-57693287 None:intergenic 45.0%
! GTGCATGTGATTTGTAGCTG+AGG + chr1_2:57693350-57693369 Msa0079720:intron 45.0%
GGAATGATCAATTTGTGGGC+AGG + chr1_2:57693433-57693452 Msa0079720:intron 45.0%
GCTCTGTGAACTTGATGTCA+GGG - chr1_2:57693834-57693853 None:intergenic 45.0%
GAAAGAGGCAAGTCCAAAGT+CGG - chr1_2:57694194-57694213 None:intergenic 45.0%
GTGTAGTTACCCTTTGGTAC+CGG + chr1_2:57694248-57694267 Msa0079720:CDS 45.0%
TCTGTACGACCAGGCATAAT+TGG - chr1_2:57694367-57694386 None:intergenic 45.0%
AATTATGCCTGGTCGTACAG+AGG + chr1_2:57694366-57694385 Msa0079720:CDS 45.0%
ATTATCACCTCTGTACGACC+AGG - chr1_2:57694376-57694395 None:intergenic 45.0%
! GGAATCGGGTATTGTGTCTG+AGG + chr1_2:57692946-57692965 Msa0079720:CDS 50.0%
! GGGTATTGTGTCTGAGGTGA+AGG + chr1_2:57692952-57692971 Msa0079720:CDS 50.0%
AGTGTCCACAAGTAGAGCTG+AGG + chr1_2:57693018-57693037 Msa0079720:CDS 50.0%
GTGTCCACAAGTAGAGCTGA+GGG + chr1_2:57693019-57693038 Msa0079720:CDS 50.0%
ACTTCCCTCAGCTCTACTTG+TGG - chr1_2:57693026-57693045 None:intergenic 50.0%
AAGTAGAGCTGAGGGAAGTG+TGG + chr1_2:57693027-57693046 Msa0079720:CDS 50.0%
GAGAAGGAGGAGAAGAGTGA+CGG + chr1_2:57693088-57693107 Msa0079720:CDS 50.0%
AGGAGAAGAGTGACGGTGAT+GGG + chr1_2:57693095-57693114 Msa0079720:CDS 50.0%
!! TTTGGCGGGTTACTCAACCT+CGG - chr1_2:57693163-57693182 None:intergenic 50.0%
CCCCTTGCAAATTCTTTGGC+GGG - chr1_2:57693177-57693196 None:intergenic 50.0%
CCCGCCAAAGAATTTGCAAG+GGG + chr1_2:57693174-57693193 Msa0079720:CDS 50.0%
CAAACTGCCGTAAGCCAAGA+CGG - chr1_2:57693220-57693239 None:intergenic 50.0%
TCTTGGCTTACGGCAGTTTG+TGG + chr1_2:57693220-57693239 Msa0079720:CDS 50.0%
CTTGGCTTACGGCAGTTTGT+GGG + chr1_2:57693221-57693240 Msa0079720:CDS 50.0%
TTGGCTTACGGCAGTTTGTG+GGG + chr1_2:57693222-57693241 Msa0079720:CDS 50.0%
GTTTGTGGGGAAGCCCTTAA+TGG + chr1_2:57693235-57693254 Msa0079720:CDS 50.0%
GGCTCTGTGAACTTGATGTC+AGG - chr1_2:57693835-57693854 None:intergenic 50.0%
CATCAAGTTCACAGAGCCTC+AGG + chr1_2:57693837-57693856 Msa0079720:CDS 50.0%
AGCAAACCTGGTCTAACCTG+AGG - chr1_2:57693856-57693875 None:intergenic 50.0%
!! GCGGGTTGGATCAAAGAAAG+AGG - chr1_2:57694209-57694228 None:intergenic 50.0%
!! CTTCTCGGTGCCACAGATTA+TGG + chr1_2:57694283-57694302 Msa0079720:CDS 50.0%
! GGTGCCACAGATTATGGTGT+GGG + chr1_2:57694289-57694308 Msa0079720:CDS 50.0%
CACACCCACACCATAATCTG+TGG - chr1_2:57694296-57694315 None:intergenic 50.0%
CACAGATTATGGTGTGGGTG+TGG + chr1_2:57694294-57694313 Msa0079720:CDS 50.0%
AAATGCAACCGGCACTCCAA+AGG - chr1_2:57694321-57694340 None:intergenic 50.0%
!!! TGGAGTGCCGGTTGCATTTT+AGG + chr1_2:57694322-57694341 Msa0079720:CDS 50.0%
! GGAATCGGGTATTGTGTCTG+AGG + chr1_2:57692946-57692965 Msa0079720:CDS 50.0%
! GGGTATTGTGTCTGAGGTGA+AGG + chr1_2:57692952-57692971 Msa0079720:CDS 50.0%
AGTGTCCACAAGTAGAGCTG+AGG + chr1_2:57693018-57693037 Msa0079720:CDS 50.0%
GTGTCCACAAGTAGAGCTGA+GGG + chr1_2:57693019-57693038 Msa0079720:CDS 50.0%
ACTTCCCTCAGCTCTACTTG+TGG - chr1_2:57693026-57693045 None:intergenic 50.0%
AAGTAGAGCTGAGGGAAGTG+TGG + chr1_2:57693027-57693046 Msa0079720:CDS 50.0%
GAGAAGGAGGAGAAGAGTGA+CGG + chr1_2:57693088-57693107 Msa0079720:CDS 50.0%
AGGAGAAGAGTGACGGTGAT+GGG + chr1_2:57693095-57693114 Msa0079720:CDS 50.0%
!! TTTGGCGGGTTACTCAACCT+CGG - chr1_2:57693163-57693182 None:intergenic 50.0%
CCCCTTGCAAATTCTTTGGC+GGG - chr1_2:57693177-57693196 None:intergenic 50.0%
CCCGCCAAAGAATTTGCAAG+GGG + chr1_2:57693174-57693193 Msa0079720:CDS 50.0%
CAAACTGCCGTAAGCCAAGA+CGG - chr1_2:57693220-57693239 None:intergenic 50.0%
TCTTGGCTTACGGCAGTTTG+TGG + chr1_2:57693220-57693239 Msa0079720:CDS 50.0%
CTTGGCTTACGGCAGTTTGT+GGG + chr1_2:57693221-57693240 Msa0079720:CDS 50.0%
TTGGCTTACGGCAGTTTGTG+GGG + chr1_2:57693222-57693241 Msa0079720:CDS 50.0%
GTTTGTGGGGAAGCCCTTAA+TGG + chr1_2:57693235-57693254 Msa0079720:CDS 50.0%
GGCTCTGTGAACTTGATGTC+AGG - chr1_2:57693835-57693854 None:intergenic 50.0%
CATCAAGTTCACAGAGCCTC+AGG + chr1_2:57693837-57693856 Msa0079720:CDS 50.0%
AGCAAACCTGGTCTAACCTG+AGG - chr1_2:57693856-57693875 None:intergenic 50.0%
!! GCGGGTTGGATCAAAGAAAG+AGG - chr1_2:57694209-57694228 None:intergenic 50.0%
!! CTTCTCGGTGCCACAGATTA+TGG + chr1_2:57694283-57694302 Msa0079720:CDS 50.0%
! GGTGCCACAGATTATGGTGT+GGG + chr1_2:57694289-57694308 Msa0079720:CDS 50.0%
CACACCCACACCATAATCTG+TGG - chr1_2:57694296-57694315 None:intergenic 50.0%
CACAGATTATGGTGTGGGTG+TGG + chr1_2:57694294-57694313 Msa0079720:CDS 50.0%
AAATGCAACCGGCACTCCAA+AGG - chr1_2:57694321-57694340 None:intergenic 50.0%
!!! TGGAGTGCCGGTTGCATTTT+AGG + chr1_2:57694322-57694341 Msa0079720:CDS 50.0%
GAGAGCTGAGTCGAGCAAGA+GGG + chr1_2:57692988-57693007 Msa0079720:CDS 55.0%
! AGCTGAGGGAAGTGTGGTAG+AGG + chr1_2:57693033-57693052 Msa0079720:CDS 55.0%
GAGGAGAAGAGTGACGGTGA+TGG + chr1_2:57693094-57693113 Msa0079720:CDS 55.0%
GGAGAAGAGTGACGGTGATG+GGG + chr1_2:57693096-57693115 Msa0079720:CDS 55.0%
!! GTGACGGTGATGGGGTTCAA+CGG + chr1_2:57693104-57693123 Msa0079720:CDS 55.0%
TGATGGGGTTCAACGGCCAA+AGG + chr1_2:57693111-57693130 Msa0079720:CDS 55.0%
GATGGGGTTCAACGGCCAAA+GGG + chr1_2:57693112-57693131 Msa0079720:CDS 55.0%
GAAGATCGAAGCCAAACCCG+AGG + chr1_2:57693143-57693162 Msa0079720:CDS 55.0%
GGGTTACTCAACCTCGGGTT+TGG - chr1_2:57693157-57693176 None:intergenic 55.0%
!! TTGGCGGGTTACTCAACCTC+GGG - chr1_2:57693162-57693181 None:intergenic 55.0%
TGGATGGCCGTCTTGGCTTA+CGG + chr1_2:57693210-57693229 Msa0079720:CDS 55.0%
CCGCGGAATCCACCCATTAA+GGG - chr1_2:57693251-57693270 None:intergenic 55.0%
! CCCTTAATGGGTGGATTCCG+CGG + chr1_2:57693248-57693267 Msa0079720:CDS 55.0%
TCCGCGGAATCCACCCATTA+AGG - chr1_2:57693252-57693271 None:intergenic 55.0%
! TAATGGGTGGATTCCGCGGA+AGG + chr1_2:57693252-57693271 Msa0079720:CDS 55.0%
ACAGAGCCTCAGGTTAGACC+AGG + chr1_2:57693847-57693866 Msa0079720:intron 55.0%
GTCATAGGATGTCTGCGGGT+TGG - chr1_2:57694223-57694242 None:intergenic 55.0%
!! CGGTGCCACAGATTATGGTG+TGG + chr1_2:57694288-57694307 Msa0079720:CDS 55.0%
ATGGTGTGGGTGTGGACCTT+TGG + chr1_2:57694302-57694321 Msa0079720:CDS 55.0%
GAGAGCTGAGTCGAGCAAGA+GGG + chr1_2:57692988-57693007 Msa0079720:CDS 55.0%
! AGCTGAGGGAAGTGTGGTAG+AGG + chr1_2:57693033-57693052 Msa0079720:CDS 55.0%
GAGGAGAAGAGTGACGGTGA+TGG + chr1_2:57693094-57693113 Msa0079720:CDS 55.0%
GGAGAAGAGTGACGGTGATG+GGG + chr1_2:57693096-57693115 Msa0079720:CDS 55.0%
!! GTGACGGTGATGGGGTTCAA+CGG + chr1_2:57693104-57693123 Msa0079720:CDS 55.0%
TGATGGGGTTCAACGGCCAA+AGG + chr1_2:57693111-57693130 Msa0079720:CDS 55.0%
GATGGGGTTCAACGGCCAAA+GGG + chr1_2:57693112-57693131 Msa0079720:CDS 55.0%
GAAGATCGAAGCCAAACCCG+AGG + chr1_2:57693143-57693162 Msa0079720:CDS 55.0%
GGGTTACTCAACCTCGGGTT+TGG - chr1_2:57693157-57693176 None:intergenic 55.0%
!! TTGGCGGGTTACTCAACCTC+GGG - chr1_2:57693162-57693181 None:intergenic 55.0%
TGGATGGCCGTCTTGGCTTA+CGG + chr1_2:57693210-57693229 Msa0079720:CDS 55.0%
CCGCGGAATCCACCCATTAA+GGG - chr1_2:57693251-57693270 None:intergenic 55.0%
! CCCTTAATGGGTGGATTCCG+CGG + chr1_2:57693248-57693267 Msa0079720:CDS 55.0%
TCCGCGGAATCCACCCATTA+AGG - chr1_2:57693252-57693271 None:intergenic 55.0%
! TAATGGGTGGATTCCGCGGA+AGG + chr1_2:57693252-57693271 Msa0079720:CDS 55.0%
ACAGAGCCTCAGGTTAGACC+AGG + chr1_2:57693847-57693866 Msa0079720:intron 55.0%
GTCATAGGATGTCTGCGGGT+TGG - chr1_2:57694223-57694242 None:intergenic 55.0%
!! CGGTGCCACAGATTATGGTG+TGG + chr1_2:57694288-57694307 Msa0079720:CDS 55.0%
ATGGTGTGGGTGTGGACCTT+TGG + chr1_2:57694302-57694321 Msa0079720:CDS 55.0%
CGAGAGCTGAGTCGAGCAAG+AGG + chr1_2:57692987-57693006 Msa0079720:CDS 60.0%
CAAGGGGAGCAAGTAGCAGC+TGG + chr1_2:57693190-57693209 Msa0079720:CDS 60.0%
GGGAGCAAGTAGCAGCTGGA+TGG + chr1_2:57693194-57693213 Msa0079720:CDS 60.0%
TAGCAGCTGGATGGCCGTCT+TGG + chr1_2:57693203-57693222 Msa0079720:CDS 60.0%
GTGGGGAAGCCCTTAATGGG+TGG + chr1_2:57693239-57693258 Msa0079720:CDS 60.0%
CTCAGGAGGCCGGTACCAAA+GGG - chr1_2:57694260-57694279 None:intergenic 60.0%
ACTCAGGAGGCCGGTACCAA+AGG - chr1_2:57694261-57694280 None:intergenic 60.0%
CGAGAAGCAACTCAGGAGGC+CGG - chr1_2:57694270-57694289 None:intergenic 60.0%
CGGCCTCCTGAGTTGCTTCT+CGG + chr1_2:57694268-57694287 Msa0079720:CDS 60.0%
GCACCGAGAAGCAACTCAGG+AGG - chr1_2:57694274-57694293 None:intergenic 60.0%
! GTGGCACCGAGAAGCAACTC+AGG - chr1_2:57694277-57694296 None:intergenic 60.0%
!! GGTGTGGACCTTTGGAGTGC+CGG + chr1_2:57694310-57694329 Msa0079720:CDS 60.0%
CGAGAGCTGAGTCGAGCAAG+AGG + chr1_2:57692987-57693006 Msa0079720:CDS 60.0%
CAAGGGGAGCAAGTAGCAGC+TGG + chr1_2:57693190-57693209 Msa0079720:CDS 60.0%
GGGAGCAAGTAGCAGCTGGA+TGG + chr1_2:57693194-57693213 Msa0079720:CDS 60.0%
TAGCAGCTGGATGGCCGTCT+TGG + chr1_2:57693203-57693222 Msa0079720:CDS 60.0%
GTGGGGAAGCCCTTAATGGG+TGG + chr1_2:57693239-57693258 Msa0079720:CDS 60.0%
CTCAGGAGGCCGGTACCAAA+GGG - chr1_2:57694260-57694279 None:intergenic 60.0%
ACTCAGGAGGCCGGTACCAA+AGG - chr1_2:57694261-57694280 None:intergenic 60.0%
CGAGAAGCAACTCAGGAGGC+CGG - chr1_2:57694270-57694289 None:intergenic 60.0%
CGGCCTCCTGAGTTGCTTCT+CGG + chr1_2:57694268-57694287 Msa0079720:CDS 60.0%
GCACCGAGAAGCAACTCAGG+AGG - chr1_2:57694274-57694293 None:intergenic 60.0%
! GTGGCACCGAGAAGCAACTC+AGG - chr1_2:57694277-57694296 None:intergenic 60.0%
!! GGTGTGGACCTTTGGAGTGC+CGG + chr1_2:57694310-57694329 Msa0079720:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 57692297 57694399 57692297 ID=Msa0079720;Name=Msa0079720
chr1_2 mRNA 57692297 57694399 57692297 ID=Msa0079720-mRNA-1;Parent=Msa0079720;Name=Msa0079720-mRNA-1;_AED=0.12;_eAED=0.16;_QI=250|0.5|0.6|1|0.75|0.6|5|0|317
chr1_2 exon 57692297 57692454 57692297 ID=Msa0079720-mRNA-1:exon:18347;Parent=Msa0079720-mRNA-1
chr1_2 exon 57692828 57693300 57692828 ID=Msa0079720-mRNA-1:exon:18348;Parent=Msa0079720-mRNA-1
chr1_2 exon 57693574 57693858 57693574 ID=Msa0079720-mRNA-1:exon:18349;Parent=Msa0079720-mRNA-1
chr1_2 exon 57693933 57693969 57693933 ID=Msa0079720-mRNA-1:exon:18350;Parent=Msa0079720-mRNA-1
chr1_2 exon 57694149 57694399 57694149 ID=Msa0079720-mRNA-1:exon:18351;Parent=Msa0079720-mRNA-1
chr1_2 five_prime_UTR 57692297 57692454 57692297 ID=Msa0079720-mRNA-1:five_prime_utr;Parent=Msa0079720-mRNA-1
chr1_2 five_prime_UTR 57692828 57692919 57692828 ID=Msa0079720-mRNA-1:five_prime_utr;Parent=Msa0079720-mRNA-1
chr1_2 CDS 57692920 57693300 57692920 ID=Msa0079720-mRNA-1:cds;Parent=Msa0079720-mRNA-1
chr1_2 CDS 57693574 57693858 57693574 ID=Msa0079720-mRNA-1:cds;Parent=Msa0079720-mRNA-1
chr1_2 CDS 57693933 57693969 57693933 ID=Msa0079720-mRNA-1:cds;Parent=Msa0079720-mRNA-1
chr1_2 CDS 57694149 57694399 57694149 ID=Msa0079720-mRNA-1:cds;Parent=Msa0079720-mRNA-1
Gene Sequence

>Msa0079720

ATGGGTTGTGTAATTAGCCGAGAAGTGGAATCGGGTATTGTGTCTGAGGTGAAGGAAGAGAAGAATTCGAGAGCTGAGTCGAGCAAGAGGGTTGAAGAAGTGTCCACAAGTAGAGCTGAGGGAAGTGTGGTAGAGGTTCAGAATGGTGAGAAGGTGAAGAAGGTTAAGGAGAAGGAGGAGAAGAGTGACGGTGATGGGGTTCAACGGCCAAAGGGTGAGAGAAGAAGATCGAAGCCAAACCCGAGGTTGAGTAACCCGCCAAAGAATTTGCAAGGGGAGCAAGTAGCAGCTGGATGGCCGTCTTGGCTTACGGCAGTTTGTGGGGAAGCCCTTAATGGGTGGATTCCGCGGAAGGCTGATACATTTGAGAAAATAGATAAGATTGGTCAAGGAACATATAGTAATGTATACAAAGCTAAAGATTTAATAACGGGTAAGATTGTTGCATTGAAGAAGGTTCGGTTTGATAATTTGGAACCCGAGAGTGTAAAATTCATGGCTAGAGAGATCCTTATACTGCGAAGATTGGATCATCCCAATGTTATAAAGTTAGAAGGTTTAGTTACATCTAGAATGTCATGGAGTTTGTATCTGGTGTTTGAATACATGGTACATGATTTAGCTGGACTTGCTGCAAGCCCTGACATCAAGTTCACAGAGCCTCAGTATTTGATGTTTCCAAATACTTGTTTATTGCTTGCAGGATCAAATCTTCTGATTGACAATGAAGGAATACTCAAAATTGCCGACTTTGGACTTGCCTCTTTCTTTGATCCAACCCGCAGACATCCTATGACTAATCGTGTAGTTACCCTTTGGTACCGGCCTCCTGAGTTGCTTCTCGGTGCCACAGATTATGGTGTGGGTGTGGACCTTTGGAGTGCCGGTTGCATTTTAGGAGAGTTATTGTATGGGAAACCAATTATGCCTGGTCGTACAGAGGTGATAATTTAA
Protein sequence

>Msa0079720

MGCVISREVESGIVSEVKEEKNSRAESSKRVEEVSTSRAEGSVVEVQNGEKVKKVKEKEEKSDGDGVQRPKGERRRSKPNPRLSNPPKNLQGEQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDLITGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSWSLYLVFEYMVHDLAGLAASPDIKFTEPQYLMFPNTCLLLAGSNLLIDNEGILKIADFGLASFFDPTRRHPMTNRVVTLWYRPPELLLGATDYGVGVDLWSAGCILGELLYGKPIMPGRTEVII*