AlfalfaGEDB | Msa0079720

M. sativa cultivar zhongmu-4 / Msa0079720

KEGG: K08819
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0097472 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079720	XP_013469019.1	92.097	329	12	1	1	315	1	329	0.0	585

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079720	sp\|Q9ZVM9\|Y1461_ARATH	65.179	336	85	6	1	315	1	325	1.47e-142	417

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079720	A0A072VN46	92.097	329	12	1	1	315	1	329	0.0	585

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa0079720	0.830180	3.395728e-55	-8.615850e-47
Msa0003220	Msa0079720	0.801099	1.056376e-48	-8.615850e-47
Msa0010770	Msa0079720	0.809058	2.283125e-50	-8.615850e-47
Msa0017320	Msa0079720	0.801490	8.787032e-49	-8.615850e-47
Msa0023330	Msa0079720	0.809971	1.453672e-50	-8.615850e-47
Msa0031180	Msa0079720	0.824566	7.528713e-54	-8.615850e-47
Msa0037120	Msa0079720	0.826828	2.189062e-54	-8.615850e-47
Msa0041690	Msa0079720	0.802353	5.839737e-49	-8.615850e-47
Msa0054820	Msa0079720	0.837151	6.155949e-57	-8.615850e-47
Msa0064920	Msa0079720	0.839045	2.003509e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079720	MtrunA17_Chr1g0191221	92.097	329	12	1	1	315	1	329	0.0	585
Msa0079720	MtrunA17_Chr7g0273601	69.851	335	60	7	1	315	1	314	5.39e-155	446
Msa0079720	MtrunA17_Chr2g0286421	74.648	284	52	5	48	315	30	309	9.69e-146	421
Msa0079720	MtrunA17_Chr4g0066691	75.397	252	48	1	78	315	60	311	1.08e-134	393
Msa0079720	MtrunA17_Chr2g0317501	57.386	352	102	7	1	315	1	341	2.60e-125	374
Msa0079720	MtrunA17_Chr3g0131861	65.505	287	71	5	45	315	30	304	3.40e-121	359
Msa0079720	MtrunA17_Chr2g0324461	56.250	352	113	8	1	315	1	348	6.42e-120	360
Msa0079720	MtrunA17_Chr4g0040141	55.294	340	123	7	1	315	1	336	3.25e-118	355
Msa0079720	MtrunA17_Chr4g0061141	63.710	248	76	1	82	315	65	312	4.50e-112	339
Msa0079720	MtrunA17_Chr8g0385971	70.563	231	54	1	99	315	67	297	1.45e-111	334

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0079720	AT1G54610.1	65.179	336	85	6	1	315	1	325	1.49e-143	417
Msa0079720	AT1G54610.3	65.179	336	85	6	1	315	1	325	1.49e-143	417
Msa0079720	AT1G54610.2	65.179	336	85	6	1	315	1	325	1.49e-143	417
Msa0079720	AT3G05050.3	61.449	345	103	5	1	315	1	345	1.50e-132	389
Msa0079720	AT3G05050.2	61.449	345	103	5	1	315	1	345	1.50e-132	389
Msa0079720	AT3G05050.1	61.449	345	103	5	1	315	1	345	1.50e-132	389
Msa0079720	AT1G53050.2	71.901	242	54	1	88	315	100	341	1.22e-121	365
Msa0079720	AT1G53050.1	71.901	242	54	1	88	315	100	341	1.22e-121	365
Msa0079720	AT5G50860.2	54.955	333	120	4	1	315	1	321	2.83e-115	342
Msa0079720	AT5G50860.1	54.955	333	120	4	1	315	1	321	5.07e-114	342

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Find 120 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTAAAGATTTAATAAC+GGG	0.439830	1_2:+57693604	Msa0079720:CDS
AAATGCAACCGGCACTCCAA+AGG	0.576009	1_2:-57694318	None:intergenic
AACCCGCCAAAGAATTTGCA+AGG	0.562913	1_2:+57693172	Msa0079720:CDS
AAGTAGAGCTGAGGGAAGTG+TGG	0.587570	1_2:+57693027	Msa0079720:CDS
AATACTTGTTTATTGCTTGC+AGG	0.295746	1_2:+57693948	Msa0079720:CDS
AATCTTCTGATTGACAATGA+AGG	0.506525	1_2:+57694154	Msa0079720:CDS
AATGTCATGGAGTTTGTATC+TGG	0.529876	1_2:+57693765	Msa0079720:CDS
AATTAGCCGAGAAGTGGAAT+CGG	0.517081	1_2:+57692931	Msa0079720:CDS
AATTATGCCTGGTCGTACAG+AGG	0.669314	1_2:+57694366	Msa0079720:CDS
ACAGTAACAGTAATTGAAAC+AGG	0.359780	1_2:-57692434	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTCTTTGTCTCTTAAAAGA+CGG	+	chr1_2:57692355-57692374	Msa0079720:five_prime_UTR	30.0%
CAGTAACAGTAATTGAAACA+GGG	-	chr1_2:57692436-57692455	None:intergenic	30.0%
ACAGTAACAGTAATTGAAAC+AGG	-	chr1_2:57692437-57692456	None:intergenic	30.0%
AAAAGGGGCAAAAACAAAAA+TGG	-	chr1_2:57692484-57692503	None:intergenic	30.0%
ATCTCAACTCAATTCCAATT+TGG	+	chr1_2:57692593-57692612	Msa0079720:intron	30.0%
TGATCGTTCGTGATTAAAAA+CGG	+	chr1_2:57692843-57692862	Msa0079720:five_prime_UTR	30.0%
TTGTTGGAATGATCAATTTG+TGG	+	chr1_2:57693428-57693447	Msa0079720:intron	30.0%
TGTTGGAATGATCAATTTGT+GGG	+	chr1_2:57693429-57693448	Msa0079720:intron	30.0%
AGAGATTCTACACAATTACT+TGG	-	chr1_2:57693477-57693496	None:intergenic	30.0%
TAAGATTGTTGCATTGAAGA+AGG	+	chr1_2:57693627-57693646	Msa0079720:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	57692297	57694399	57692297	ID=Msa0079720;Name=Msa0079720
chr1_2	mRNA	57692297	57694399	57692297	ID=Msa0079720-mRNA-1;Parent=Msa0079720;Name=Msa0079720-mRNA-1;_AED=0.12;_eAED=0.16;_QI=250\|0.5\|0.6\|1\|0.75\|0.6\|5\|0\|317
chr1_2	exon	57692297	57692454	57692297	ID=Msa0079720-mRNA-1:exon:18347;Parent=Msa0079720-mRNA-1
chr1_2	exon	57692828	57693300	57692828	ID=Msa0079720-mRNA-1:exon:18348;Parent=Msa0079720-mRNA-1
chr1_2	exon	57693574	57693858	57693574	ID=Msa0079720-mRNA-1:exon:18349;Parent=Msa0079720-mRNA-1
chr1_2	exon	57693933	57693969	57693933	ID=Msa0079720-mRNA-1:exon:18350;Parent=Msa0079720-mRNA-1
chr1_2	exon	57694149	57694399	57694149	ID=Msa0079720-mRNA-1:exon:18351;Parent=Msa0079720-mRNA-1
chr1_2	five_prime_UTR	57692297	57692454	57692297	ID=Msa0079720-mRNA-1:five_prime_utr;Parent=Msa0079720-mRNA-1
chr1_2	five_prime_UTR	57692828	57692919	57692828	ID=Msa0079720-mRNA-1:five_prime_utr;Parent=Msa0079720-mRNA-1
chr1_2	CDS	57692920	57693300	57692920	ID=Msa0079720-mRNA-1:cds;Parent=Msa0079720-mRNA-1
chr1_2	CDS	57693574	57693858	57693574	ID=Msa0079720-mRNA-1:cds;Parent=Msa0079720-mRNA-1
chr1_2	CDS	57693933	57693969	57693933	ID=Msa0079720-mRNA-1:cds;Parent=Msa0079720-mRNA-1
chr1_2	CDS	57694149	57694399	57694149	ID=Msa0079720-mRNA-1:cds;Parent=Msa0079720-mRNA-1

Gene Sequence

>Msa0079720

ATGGGTTGTGTAATTAGCCGAGAAGTGGAATCGGGTATTGTGTCTGAGGTGAAGGAAGAGAAGAATTCGAGAGCTGAGTCGAGCAAGAGGGTTGAAGAAGTGTCCACAAGTAGAGCTGAGGGAAGTGTGGTAGAGGTTCAGAATGGTGAGAAGGTGAAGAAGGTTAAGGAGAAGGAGGAGAAGAGTGACGGTGATGGGGTTCAACGGCCAAAGGGTGAGAGAAGAAGATCGAAGCCAAACCCGAGGTTGAGTAACCCGCCAAAGAATTTGCAAGGGGAGCAAGTAGCAGCTGGATGGCCGTCTTGGCTTACGGCAGTTTGTGGGGAAGCCCTTAATGGGTGGATTCCGCGGAAGGCTGATACATTTGAGAAAATAGATAAGATTGGTCAAGGAACATATAGTAATGTATACAAAGCTAAAGATTTAATAACGGGTAAGATTGTTGCATTGAAGAAGGTTCGGTTTGATAATTTGGAACCCGAGAGTGTAAAATTCATGGCTAGAGAGATCCTTATACTGCGAAGATTGGATCATCCCAATGTTATAAAGTTAGAAGGTTTAGTTACATCTAGAATGTCATGGAGTTTGTATCTGGTGTTTGAATACATGGTACATGATTTAGCTGGACTTGCTGCAAGCCCTGACATCAAGTTCACAGAGCCTCAGTATTTGATGTTTCCAAATACTTGTTTATTGCTTGCAGGATCAAATCTTCTGATTGACAATGAAGGAATACTCAAAATTGCCGACTTTGGACTTGCCTCTTTCTTTGATCCAACCCGCAGACATCCTATGACTAATCGTGTAGTTACCCTTTGGTACCGGCCTCCTGAGTTGCTTCTCGGTGCCACAGATTATGGTGTGGGTGTGGACCTTTGGAGTGCCGGTTGCATTTTAGGAGAGTTATTGTATGGGAAACCAATTATGCCTGGTCGTACAGAGGTGATAATTTAA

Protein sequence

>Msa0079720

MGCVISREVESGIVSEVKEEKNSRAESSKRVEEVSTSRAEGSVVEVQNGEKVKKVKEKEEKSDGDGVQRPKGERRRSKPNPRLSNPPKNLQGEQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDLITGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSWSLYLVFEYMVHDLAGLAASPDIKFTEPQYLMFPNTCLLLAGSNLLIDNEGILKIADFGLASFFDPTRRHPMTNRVVTLWYRPPELLLGATDYGVGVDLWSAGCILGELLYGKPIMPGRTEVII*