Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896080 | KEH26836.1 | 90.909 | 55 | 5 | 0 | 17 | 71 | 395 | 449 | 1.61e-23 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896080 | A0A072UBJ2 | 90.909 | 55 | 5 | 0 | 17 | 71 | 395 | 449 | 7.71e-24 | 102 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015750 | Msa0896080 | 0.825277 | 5.117416e-54 | -8.615850e-47 |
| Msa0016570 | Msa0896080 | 0.816975 | 4.191465e-52 | -8.615850e-47 |
| Msa0016580 | Msa0896080 | 0.828304 | 9.684164e-55 | -8.615850e-47 |
| Msa0102070 | Msa0896080 | 0.840633 | 7.732632e-58 | -8.615850e-47 |
| Msa0110270 | Msa0896080 | 0.810934 | 9.004219e-51 | -8.615850e-47 |
| Msa0604350 | Msa0896080 | 0.823291 | 1.499155e-53 | -8.615850e-47 |
| Msa0636170 | Msa0896080 | 0.809915 | 1.494350e-50 | -8.615850e-47 |
| Msa0639610 | Msa0896080 | 0.838773 | 2.355725e-57 | -8.615850e-47 |
| Msa0678930 | Msa0896080 | 0.805789 | 1.126357e-49 | -8.615850e-47 |
| Msa0694370 | Msa0896080 | 0.801022 | 1.095195e-48 | -8.615850e-47 |
| Msa0726140 | Msa0896080 | 0.828236 | 1.005758e-54 | -8.615850e-47 |
| Msa0729800 | Msa0896080 | 0.882421 | 1.056692e-70 | -8.615850e-47 |
| Msa0733290 | Msa0896080 | 0.845544 | 3.801356e-59 | -8.615850e-47 |
| Msa0741990 | Msa0896080 | 0.811014 | 8.651235e-51 | -8.615850e-47 |
| Msa0743810 | Msa0896080 | 0.848629 | 5.426288e-60 | -8.615850e-47 |
| Msa0745060 | Msa0896080 | 0.868534 | 6.081336e-66 | -8.615850e-47 |
| Msa0767720 | Msa0896080 | 0.834811 | 2.414701e-56 | -8.615850e-47 |
| Msa0783160 | Msa0896080 | 0.878849 | 2.012062e-69 | -8.615850e-47 |
| Msa0787600 | Msa0896080 | 0.844067 | 9.507898e-59 | -8.615850e-47 |
| Msa0808010 | Msa0896080 | 0.867133 | 1.713183e-65 | -8.615850e-47 |
| Msa0808020 | Msa0896080 | 0.862883 | 3.697179e-64 | -8.615850e-47 |
| Msa0811080 | Msa0896080 | 0.805843 | 1.097628e-49 | -8.615850e-47 |
| Msa0811270 | Msa0896080 | 0.806789 | 6.936880e-50 | -8.615850e-47 |
| Msa0825860 | Msa0896080 | 0.864569 | 1.106897e-64 | -8.615850e-47 |
| Msa0142220 | Msa0896080 | 0.813172 | 2.927657e-51 | -8.615850e-47 |
| Msa0145750 | Msa0896080 | 0.801809 | 7.556303e-49 | -8.615850e-47 |
| Msa0200000 | Msa0896080 | 0.841989 | 3.399193e-58 | -8.615850e-47 |
| Msa0227480 | Msa0896080 | 0.854924 | 8.902489e-62 | -8.615850e-47 |
| Msa0232850 | Msa0896080 | 0.826463 | 2.676292e-54 | -8.615850e-47 |
| Msa0365500 | Msa0896080 | 0.807972 | 3.892755e-50 | -8.615850e-47 |
| Msa0384800 | Msa0896080 | 0.815342 | 9.708055e-52 | -8.615850e-47 |
| Msa0414410 | Msa0896080 | 0.848582 | 5.590486e-60 | -8.615850e-47 |
| Msa0414420 | Msa0896080 | 0.866739 | 2.286912e-65 | -8.615850e-47 |
| Msa0438620 | Msa0896080 | 0.827829 | 1.260348e-54 | -8.615850e-47 |
| Msa0450000 | Msa0896080 | 0.845787 | 3.266821e-59 | -8.615850e-47 |
| Msa0450570 | Msa0896080 | 0.815183 | 1.053488e-51 | -8.615850e-47 |
| Msa0452900 | Msa0896080 | 0.884017 | 2.744709e-71 | -8.615850e-47 |
| Msa0453120 | Msa0896080 | 0.815666 | 8.225337e-52 | -8.615850e-47 |
| Msa0454910 | Msa0896080 | 0.810349 | 1.204705e-50 | -8.615850e-47 |
| Msa0459160 | Msa0896080 | 0.825727 | 4.004104e-54 | -8.615850e-47 |
| Msa0459170 | Msa0896080 | 0.802705 | 4.941787e-49 | -8.615850e-47 |
| Msa0267000 | Msa0896080 | 0.845923 | 2.999527e-59 | -8.615850e-47 |
| Msa0267010 | Msa0896080 | 0.861247 | 1.173470e-63 | -8.615850e-47 |
| Msa0270520 | Msa0896080 | 0.805195 | 1.500717e-49 | -8.615850e-47 |
| Msa0285810 | Msa0896080 | 0.803508 | 3.371546e-49 | -8.615850e-47 |
| Msa0304170 | Msa0896080 | 0.816740 | 4.731179e-52 | -8.615850e-47 |
| Msa0306460 | Msa0896080 | 0.816290 | 5.968139e-52 | -8.615850e-47 |
| Msa0342240 | Msa0896080 | 0.878344 | 3.031239e-69 | -8.615850e-47 |
| Msa0360510 | Msa0896080 | 0.855831 | 4.843666e-62 | -8.615850e-47 |
| Msa0491590 | Msa0896080 | 0.844636 | 6.688984e-59 | -8.615850e-47 |
| Msa0564890 | Msa0896080 | 0.857095 | 2.061218e-62 | -8.615850e-47 |
| Msa0596150 | Msa0896080 | 0.814265 | 1.682387e-51 | -8.615850e-47 |
| Msa0846210 | Msa0896080 | 0.812101 | 5.021663e-51 | -8.615850e-47 |
| Msa0846330 | Msa0896080 | 0.835398 | 1.717671e-56 | -8.615850e-47 |
| Msa0846350 | Msa0896080 | 0.837573 | 4.798926e-57 | -8.615850e-47 |
| Msa0848960 | Msa0896080 | 0.833252 | 5.935188e-56 | -8.615850e-47 |
| Msa0858980 | Msa0896080 | 0.820557 | 6.441069e-53 | -8.615850e-47 |
| Msa0865320 | Msa0896080 | 0.844819 | 5.968469e-59 | -8.615850e-47 |
| Msa0872230 | Msa0896080 | 0.805804 | 1.118541e-49 | -8.615850e-47 |
| Msa0885290 | Msa0896080 | 0.809218 | 2.109551e-50 | -8.615850e-47 |
| Msa0888370 | Msa0896080 | 0.829693 | 4.463760e-55 | -8.615850e-47 |
| Msa0896080 | Msa0952350 | 0.817823 | 2.700739e-52 | -8.615850e-47 |
| Msa0896080 | Msa0981370 | 0.832124 | 1.130620e-55 | -8.615850e-47 |
| Msa0896080 | Msa0989060 | 0.825009 | 5.921020e-54 | -8.615850e-47 |
| Msa0896080 | Msa1016280 | 0.866632 | 2.474757e-65 | -8.615850e-47 |
| Msa0896080 | Msa1023050 | 0.800960 | 1.127680e-48 | -8.615850e-47 |
| Msa0896080 | Msa1024240 | 0.805093 | 1.576456e-49 | -8.615850e-47 |
| Msa0896080 | Msa1025360 | 0.871206 | 8.150931e-67 | -8.615850e-47 |
| Msa0896080 | Msa1025370 | 0.856915 | 2.329762e-62 | -8.615850e-47 |
| Msa0896080 | Msa1044830 | 0.860010 | 2.782128e-63 | -8.615850e-47 |
| Msa0896080 | Msa1044840 | 0.867774 | 1.067768e-65 | -8.615850e-47 |
| Msa0896080 | Msa1060840 | 0.800903 | 1.158249e-48 | -8.615850e-47 |
| Msa0896080 | Msa1092990 | 0.856906 | 2.343394e-62 | -8.615850e-47 |
| Msa0896080 | Msa1100980 | 0.861592 | 9.205312e-64 | -8.615850e-47 |
| Msa0896080 | Msa1109440 | 0.836956 | 6.906165e-57 | -8.615850e-47 |
| Msa0896080 | Msa1121200 | 0.850748 | 1.389165e-60 | -8.615850e-47 |
| Msa0896080 | Msa1135740 | 0.841581 | 4.356374e-58 | -8.615850e-47 |
| Msa0896080 | Msa1146110 | 0.849513 | 3.081165e-60 | -8.615850e-47 |
| Msa0896080 | Msa1149360 | 0.808468 | 3.051473e-50 | -8.615850e-47 |
| Msa0896080 | Msa1187940 | 0.827475 | 1.532960e-54 | -8.615850e-47 |
| Msa0896080 | Msa1187950 | 0.809491 | 1.843400e-50 | -8.615850e-47 |
| Msa0896080 | Msa1192640 | 0.849500 | 3.106825e-60 | -8.615850e-47 |
| Msa0896080 | Msa1246880 | 0.814008 | 1.916983e-51 | -8.615850e-47 |
| Msa0896080 | Msa1248300 | 0.807034 | 6.156213e-50 | -8.615850e-47 |
| Msa0896080 | Msa1248310 | 0.804543 | 2.053478e-49 | -8.615850e-47 |
| Msa0896080 | Msa1260100 | 0.811882 | 5.605827e-51 | -8.615850e-47 |
| Msa0896080 | Msa1269670 | 0.863716 | 2.041021e-64 | -8.615850e-47 |
| Msa0896080 | Msa1270230 | 0.863280 | 2.785715e-64 | -8.615850e-47 |
| Msa0896080 | Msa1270240 | 0.846913 | 1.611249e-59 | -8.615850e-47 |
| Msa0896080 | Msa1270270 | 0.827019 | 1.970797e-54 | -8.615850e-47 |
| Msa0896080 | Msa1283330 | 0.843877 | 1.068942e-58 | -8.615850e-47 |
| Msa0896080 | Msa1285930 | 0.871326 | 7.442269e-67 | -8.615850e-47 |
| Msa0896080 | Msa1287800 | 0.855713 | 5.245050e-62 | -8.615850e-47 |
| Msa0896080 | Msa1287810 | 0.874734 | 5.356789e-68 | -8.615850e-47 |
| Msa0896080 | Msa1289420 | 0.807724 | 4.394795e-50 | -8.615850e-47 |
| Msa0896080 | Msa1289430 | 0.816736 | 4.741430e-52 | -8.615850e-47 |
| Msa0896080 | Msa1305480 | 0.843023 | 1.808082e-58 | -8.615850e-47 |
| Msa0896080 | Msa1307890 | 0.814516 | 1.480798e-51 | -8.615850e-47 |
| Msa0896080 | Msa1320300 | 0.836745 | 7.816608e-57 | -8.615850e-47 |
| Msa0896080 | Msa1340590 | 0.854276 | 1.370583e-61 | -8.615850e-47 |
| Msa0896080 | Msa1382690 | 0.809658 | 1.696804e-50 | -8.615850e-47 |
| Msa0896080 | Msa1397580 | 0.846305 | 2.360746e-59 | -8.615850e-47 |
| Msa0896080 | Msa1402790 | 0.802026 | 6.820705e-49 | -8.615850e-47 |
| Msa0896080 | Msa1404000 | 0.829348 | 5.412606e-55 | -8.615850e-47 |
| Msa0896080 | Msa1415310 | 0.847123 | 1.410739e-59 | -8.615850e-47 |
| Msa0896080 | Msa1422180 | 0.842191 | 3.006889e-58 | -8.615850e-47 |
| Msa0896080 | Msa1433120 | 0.843945 | 1.025640e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0896080 | MtrunA17_Chr6g0482501 | 90.909 | 55 | 5 | 0 | 17 | 71 | 477 | 531 | 2.92e-27 | 102 |
| Msa0896080 | MtrunA17_Chr6g0482481 | 85.185 | 54 | 8 | 0 | 17 | 70 | 134 | 187 | 6.65e-26 | 93.6 |
| Msa0896080 | MtrunA17_Chr6g0482371 | 70.968 | 62 | 18 | 0 | 10 | 71 | 62 | 123 | 2.81e-25 | 90.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 24 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGAACAGATTGAGATTT+TGG | 0.155235 | 6_1:-85579777 | Msa0896080:CDS |
| GTTCTTCAGCTTCTCCTATT+GGG | 0.285656 | 6_1:+85579792 | None:intergenic |
| TGTTCTTCAGCTTCTCCTAT+TGG | 0.317888 | 6_1:+85579791 | None:intergenic |
| TGTCAAGAATGCGTTAGATT+TGG | 0.348270 | 6_1:-85579412 | Msa0896080:CDS |
| TGCAAGAAGTCGGTATCTTC+TGG | 0.350045 | 6_1:-85579731 | Msa0896080:CDS |
| AATATCTTGGCTGGCGCATA+AGG | 0.372722 | 6_1:-85579237 | Msa0896080:three_prime_UTR |
| CAGCATTGCTTGGTAATTGT+TGG | 0.423362 | 6_1:-85579307 | Msa0896080:three_prime_UTR |
| TGGAAAAGACTGTGCCAGAC+TGG | 0.439177 | 6_1:-85579757 | Msa0896080:CDS |
| ATACATCTTGTCCTCCCAAT+AGG | 0.445957 | 6_1:-85579806 | Msa0896080:CDS |
| GACTTCTTGCAAAGCCAGTC+TGG | 0.462523 | 6_1:+85579743 | None:intergenic |
| AATTGTTGCTCAGCATTGCT+TGG | 0.475440 | 6_1:-85579317 | Msa0896080:three_prime_UTR |
| ACCAGCTATAGTGAATATCT+TGG | 0.485587 | 6_1:-85579250 | Msa0896080:three_prime_UTR |
| GCATAAGGGATTGTAAGAAC+TGG | 0.491937 | 6_1:-85579222 | Msa0896080:three_prime_UTR |
| GCCAAGATATTCACTATAGC+TGG | 0.499828 | 6_1:+85579249 | None:intergenic |
| AGAGAAGTGGAGTGAGAGAG+TGG | 0.541048 | 6_1:+85579917 | None:intergenic |
| GGTATAGAAGACAAGAGAAG+TGG | 0.541866 | 6_1:+85579904 | None:intergenic |
| CAGACAGAGAATACAATATG+TGG | 0.551554 | 6_1:+85579169 | None:intergenic |
| CTTCTGGAGACACTATGTAC+TGG | 0.555300 | 6_1:-85579715 | Msa0896080:intron |
| CTTCAGCTTCTCCTATTGGG+AGG | 0.555591 | 6_1:+85579795 | None:intergenic |
| GCTATAGTGAATATCTTGGC+TGG | 0.556676 | 6_1:-85579246 | Msa0896080:three_prime_UTR |
| ATATCTTGGCTGGCGCATAA+GGG | 0.560983 | 6_1:-85579236 | Msa0896080:three_prime_UTR |
| ATTGCTTGGTAATTGTTGGT+TGG | 0.572533 | 6_1:-85579303 | Msa0896080:three_prime_UTR |
| CAACAACGAAGATGAGTGAA+AGG | 0.610775 | 6_1:-85579358 | Msa0896080:exon |
| AGACTGGCTTTGCAAGAAGT+CGG | 0.629242 | 6_1:-85579741 | Msa0896080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAAAATTTTACATATATCA+TGG | - | chr6_1:85579514-85579533 | Msa0896080:intron | 15.0% |
| !!! | ACAAAATTTTACATATATCA+TGG | - | chr6_1:85579514-85579533 | Msa0896080:intron | 15.0% |
| !!! | TTTAGGTTTGAAATTTTGTT+TGG | + | chr6_1:85579223-85579242 | None:intergenic | 20.0% |
| !! | TACATATATCATGGATATAA+TGG | - | chr6_1:85579523-85579542 | Msa0896080:intron | 20.0% |
| !!! | TAAATTGTTCTTAAGCTTTT+TGG | - | chr6_1:85579886-85579905 | Msa0896080:intron | 20.0% |
| !!! | TTTAGGTTTGAAATTTTGTT+TGG | + | chr6_1:85579223-85579242 | None:intergenic | 20.0% |
| !! | TACATATATCATGGATATAA+TGG | - | chr6_1:85579523-85579542 | Msa0896080:intron | 20.0% |
| !!! | TAAATTGTTCTTAAGCTTTT+TGG | - | chr6_1:85579886-85579905 | Msa0896080:intron | 20.0% |
| !!! | GAAATTTTGTTTGGTAGTAT+GGG | + | chr6_1:85579214-85579233 | None:intergenic | 25.0% |
| !!! | TGAAATTTTGTTTGGTAGTA+TGG | + | chr6_1:85579215-85579234 | None:intergenic | 25.0% |
| !!! | TGGAATTTCATGTTTTAAGT+TGG | + | chr6_1:85579472-85579491 | None:intergenic | 25.0% |
| ! | AGCAGAACTTTAAATGTTAT+TGG | - | chr6_1:85579549-85579568 | Msa0896080:intron | 25.0% |
| !!! | GAAATTTTGTTTGGTAGTAT+GGG | + | chr6_1:85579214-85579233 | None:intergenic | 25.0% |
| !!! | TGAAATTTTGTTTGGTAGTA+TGG | + | chr6_1:85579215-85579234 | None:intergenic | 25.0% |
| !!! | TGGAATTTCATGTTTTAAGT+TGG | + | chr6_1:85579472-85579491 | None:intergenic | 25.0% |
| ! | AGCAGAACTTTAAATGTTAT+TGG | - | chr6_1:85579549-85579568 | Msa0896080:intron | 25.0% |
| ! | CAATTAGCAGTTATGGTTTT+AGG | + | chr6_1:85579240-85579259 | None:intergenic | 30.0% |
| CTAAAACCATAACTGCTAAT+TGG | - | chr6_1:85579238-85579257 | Msa0896080:three_prime_UTR | 30.0% | |
| ! | TGAAGAACAGATTGAGATTT+TGG | - | chr6_1:85579303-85579322 | Msa0896080:three_prime_UTR | 30.0% |
| ! | CTGATACTCTAAAAGAACTA+AGG | + | chr6_1:85579421-85579440 | None:intergenic | 30.0% |
| !! | TTAGAGTATCAGTCTCTTTT+AGG | - | chr6_1:85579429-85579448 | Msa0896080:intron | 30.0% |
| !! | TAGAGTATCAGTCTCTTTTA+GGG | - | chr6_1:85579430-85579449 | Msa0896080:intron | 30.0% |
| !!! | GTTTTTTTATAGCCCAAAGA+AGG | + | chr6_1:85579496-85579515 | None:intergenic | 30.0% |
| ! | CAATTAGCAGTTATGGTTTT+AGG | + | chr6_1:85579240-85579259 | None:intergenic | 30.0% |
| CTAAAACCATAACTGCTAAT+TGG | - | chr6_1:85579238-85579257 | Msa0896080:three_prime_UTR | 30.0% | |
| ! | TGAAGAACAGATTGAGATTT+TGG | - | chr6_1:85579303-85579322 | Msa0896080:three_prime_UTR | 30.0% |
| ! | CTGATACTCTAAAAGAACTA+AGG | + | chr6_1:85579421-85579440 | None:intergenic | 30.0% |
| !! | TTAGAGTATCAGTCTCTTTT+AGG | - | chr6_1:85579429-85579448 | Msa0896080:intron | 30.0% |
| !! | TAGAGTATCAGTCTCTTTTA+GGG | - | chr6_1:85579430-85579449 | Msa0896080:intron | 30.0% |
| !!! | GTTTTTTTATAGCCCAAAGA+AGG | + | chr6_1:85579496-85579515 | None:intergenic | 30.0% |
| ! | TTTGTTTGGTAGTATGGGTT+TGG | + | chr6_1:85579209-85579228 | None:intergenic | 35.0% |
| ACACAACCAATTAGCAGTTA+TGG | + | chr6_1:85579247-85579266 | None:intergenic | 35.0% | |
| ATGAAATTCCAGCCTTCTTT+GGG | - | chr6_1:85579481-85579500 | Msa0896080:intron | 35.0% | |
| ! | TATTGGTAGCAAAAATCCCT+TGG | - | chr6_1:85579566-85579585 | Msa0896080:intron | 35.0% |
| CTTGACACTGCAAATATAAC+AGG | + | chr6_1:85579655-85579674 | None:intergenic | 35.0% | |
| TGTCAAGAATGCGTTAGATT+TGG | - | chr6_1:85579668-85579687 | Msa0896080:intron | 35.0% | |
| ! | ATTGCTTGGTAATTGTTGGT+TGG | - | chr6_1:85579777-85579796 | Msa0896080:CDS | 35.0% |
| ACCAGCTATAGTGAATATCT+TGG | - | chr6_1:85579830-85579849 | Msa0896080:intron | 35.0% | |
| CAGACAGAGAATACAATATG+TGG | + | chr6_1:85579914-85579933 | None:intergenic | 35.0% | |
| ! | TTTGTTTGGTAGTATGGGTT+TGG | + | chr6_1:85579209-85579228 | None:intergenic | 35.0% |
| ACACAACCAATTAGCAGTTA+TGG | + | chr6_1:85579247-85579266 | None:intergenic | 35.0% | |
| ATGAAATTCCAGCCTTCTTT+GGG | - | chr6_1:85579481-85579500 | Msa0896080:intron | 35.0% | |
| ! | TATTGGTAGCAAAAATCCCT+TGG | - | chr6_1:85579566-85579585 | Msa0896080:intron | 35.0% |
| CTTGACACTGCAAATATAAC+AGG | + | chr6_1:85579655-85579674 | None:intergenic | 35.0% | |
| TGTCAAGAATGCGTTAGATT+TGG | - | chr6_1:85579668-85579687 | Msa0896080:intron | 35.0% | |
| ! | ATTGCTTGGTAATTGTTGGT+TGG | - | chr6_1:85579777-85579796 | Msa0896080:CDS | 35.0% |
| ACCAGCTATAGTGAATATCT+TGG | - | chr6_1:85579830-85579849 | Msa0896080:intron | 35.0% | |
| CAGACAGAGAATACAATATG+TGG | + | chr6_1:85579914-85579933 | None:intergenic | 35.0% | |
| GGTATAGAAGACAAGAGAAG+TGG | + | chr6_1:85579179-85579198 | None:intergenic | 40.0% | |
| TAGTATGGGTTTGGACTTTG+AGG | + | chr6_1:85579200-85579219 | None:intergenic | 40.0% | |
| ATACATCTTGTCCTCCCAAT+AGG | - | chr6_1:85579274-85579293 | Msa0896080:three_prime_UTR | 40.0% | |
| GTTCTTCAGCTTCTCCTATT+GGG | + | chr6_1:85579291-85579310 | None:intergenic | 40.0% | |
| TGTTCTTCAGCTTCTCCTAT+TGG | + | chr6_1:85579292-85579311 | None:intergenic | 40.0% | |
| CATGAAATTCCAGCCTTCTT+TGG | - | chr6_1:85579480-85579499 | Msa0896080:intron | 40.0% | |
| ! | TTTTATAGCCCAAAGAAGGC+TGG | + | chr6_1:85579492-85579511 | None:intergenic | 40.0% |
| ! | TAGTTTGAAGTCAACGCCAA+GGG | + | chr6_1:85579585-85579604 | None:intergenic | 40.0% |
| CAACAACGAAGATGAGTGAA+AGG | - | chr6_1:85579722-85579741 | Msa0896080:CDS | 40.0% | |
| AATTGTTGCTCAGCATTGCT+TGG | - | chr6_1:85579763-85579782 | Msa0896080:CDS | 40.0% | |
| ! | CAGCATTGCTTGGTAATTGT+TGG | - | chr6_1:85579773-85579792 | Msa0896080:CDS | 40.0% |
| GCCAAGATATTCACTATAGC+TGG | + | chr6_1:85579834-85579853 | None:intergenic | 40.0% | |
| GCTATAGTGAATATCTTGGC+TGG | - | chr6_1:85579834-85579853 | Msa0896080:intron | 40.0% | |
| GCATAAGGGATTGTAAGAAC+TGG | - | chr6_1:85579858-85579877 | Msa0896080:intron | 40.0% | |
| GGTATAGAAGACAAGAGAAG+TGG | + | chr6_1:85579179-85579198 | None:intergenic | 40.0% | |
| TAGTATGGGTTTGGACTTTG+AGG | + | chr6_1:85579200-85579219 | None:intergenic | 40.0% | |
| ATACATCTTGTCCTCCCAAT+AGG | - | chr6_1:85579274-85579293 | Msa0896080:three_prime_UTR | 40.0% | |
| GTTCTTCAGCTTCTCCTATT+GGG | + | chr6_1:85579291-85579310 | None:intergenic | 40.0% | |
| TGTTCTTCAGCTTCTCCTAT+TGG | + | chr6_1:85579292-85579311 | None:intergenic | 40.0% | |
| CATGAAATTCCAGCCTTCTT+TGG | - | chr6_1:85579480-85579499 | Msa0896080:intron | 40.0% | |
| ! | TTTTATAGCCCAAAGAAGGC+TGG | + | chr6_1:85579492-85579511 | None:intergenic | 40.0% |
| ! | TAGTTTGAAGTCAACGCCAA+GGG | + | chr6_1:85579585-85579604 | None:intergenic | 40.0% |
| CAACAACGAAGATGAGTGAA+AGG | - | chr6_1:85579722-85579741 | Msa0896080:CDS | 40.0% | |
| AATTGTTGCTCAGCATTGCT+TGG | - | chr6_1:85579763-85579782 | Msa0896080:CDS | 40.0% | |
| ! | CAGCATTGCTTGGTAATTGT+TGG | - | chr6_1:85579773-85579792 | Msa0896080:CDS | 40.0% |
| GCCAAGATATTCACTATAGC+TGG | + | chr6_1:85579834-85579853 | None:intergenic | 40.0% | |
| GCTATAGTGAATATCTTGGC+TGG | - | chr6_1:85579834-85579853 | Msa0896080:intron | 40.0% | |
| GCATAAGGGATTGTAAGAAC+TGG | - | chr6_1:85579858-85579877 | Msa0896080:intron | 40.0% | |
| !! | AGACTGGCTTTGCAAGAAGT+CGG | - | chr6_1:85579339-85579358 | Msa0896080:three_prime_UTR | 45.0% |
| TGCAAGAAGTCGGTATCTTC+TGG | - | chr6_1:85579349-85579368 | Msa0896080:exon | 45.0% | |
| ! | CTTCTGGAGACACTATGTAC+TGG | - | chr6_1:85579365-85579384 | Msa0896080:CDS | 45.0% |
| ! | TGGAGACACTATGTACTGGT+GGG | - | chr6_1:85579369-85579388 | Msa0896080:CDS | 45.0% |
| ! | CTAGTTTGAAGTCAACGCCA+AGG | + | chr6_1:85579586-85579605 | None:intergenic | 45.0% |
| AATATCTTGGCTGGCGCATA+AGG | - | chr6_1:85579843-85579862 | Msa0896080:intron | 45.0% | |
| ATATCTTGGCTGGCGCATAA+GGG | - | chr6_1:85579844-85579863 | Msa0896080:intron | 45.0% | |
| !! | AGACTGGCTTTGCAAGAAGT+CGG | - | chr6_1:85579339-85579358 | Msa0896080:three_prime_UTR | 45.0% |
| TGCAAGAAGTCGGTATCTTC+TGG | - | chr6_1:85579349-85579368 | Msa0896080:exon | 45.0% | |
| ! | CTTCTGGAGACACTATGTAC+TGG | - | chr6_1:85579365-85579384 | Msa0896080:CDS | 45.0% |
| ! | TGGAGACACTATGTACTGGT+GGG | - | chr6_1:85579369-85579388 | Msa0896080:CDS | 45.0% |
| ! | CTAGTTTGAAGTCAACGCCA+AGG | + | chr6_1:85579586-85579605 | None:intergenic | 45.0% |
| AATATCTTGGCTGGCGCATA+AGG | - | chr6_1:85579843-85579862 | Msa0896080:intron | 45.0% | |
| ATATCTTGGCTGGCGCATAA+GGG | - | chr6_1:85579844-85579863 | Msa0896080:intron | 45.0% | |
| AGAGAAGTGGAGTGAGAGAG+TGG | + | chr6_1:85579166-85579185 | None:intergenic | 50.0% | |
| CTTCAGCTTCTCCTATTGGG+AGG | + | chr6_1:85579288-85579307 | None:intergenic | 50.0% | |
| TGGAAAAGACTGTGCCAGAC+TGG | - | chr6_1:85579323-85579342 | Msa0896080:three_prime_UTR | 50.0% | |
| GACTTCTTGCAAAGCCAGTC+TGG | + | chr6_1:85579340-85579359 | None:intergenic | 50.0% | |
| CTGGAGACACTATGTACTGG+TGG | - | chr6_1:85579368-85579387 | Msa0896080:CDS | 50.0% | |
| AGAGAAGTGGAGTGAGAGAG+TGG | + | chr6_1:85579166-85579185 | None:intergenic | 50.0% | |
| CTTCAGCTTCTCCTATTGGG+AGG | + | chr6_1:85579288-85579307 | None:intergenic | 50.0% | |
| TGGAAAAGACTGTGCCAGAC+TGG | - | chr6_1:85579323-85579342 | Msa0896080:three_prime_UTR | 50.0% | |
| GACTTCTTGCAAAGCCAGTC+TGG | + | chr6_1:85579340-85579359 | None:intergenic | 50.0% | |
| CTGGAGACACTATGTACTGG+TGG | - | chr6_1:85579368-85579387 | Msa0896080:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 85579159 | 85579943 | 85579159 | ID=Msa0896080;Name=Msa0896080 |
| chr6_1 | mRNA | 85579159 | 85579943 | 85579159 | ID=Msa0896080-mRNA-1;Parent=Msa0896080;Name=Msa0896080-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.5|0.33|0.66|0.5|0.33|3|203|71 |
| chr6_1 | exon | 85579159 | 85579434 | 85579159 | ID=Msa0896080-mRNA-1:exon:14410;Parent=Msa0896080-mRNA-1 |
| chr6_1 | exon | 85579716 | 85579830 | 85579716 | ID=Msa0896080-mRNA-1:exon:14409;Parent=Msa0896080-mRNA-1 |
| chr6_1 | exon | 85579916 | 85579943 | 85579916 | ID=Msa0896080-mRNA-1:exon:14408;Parent=Msa0896080-mRNA-1 |
| chr6_1 | CDS | 85579916 | 85579943 | 85579916 | ID=Msa0896080-mRNA-1:cds;Parent=Msa0896080-mRNA-1 |
| chr6_1 | CDS | 85579716 | 85579830 | 85579716 | ID=Msa0896080-mRNA-1:cds;Parent=Msa0896080-mRNA-1 |
| chr6_1 | CDS | 85579362 | 85579434 | 85579362 | ID=Msa0896080-mRNA-1:cds;Parent=Msa0896080-mRNA-1 |
| chr6_1 | three_prime_UTR | 85579159 | 85579361 | 85579159 | ID=Msa0896080-mRNA-1:three_prime_utr;Parent=Msa0896080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
