AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0605150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0605150 MtrunA17_Chr4g0034391 93.033 244 11 1 1 244 404 641 1.47e-129 380
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0605150 AT3G18890.1 33.696 276 125 12 1 240 383 636 3.82e-16 77.8

Find 111 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGAGTTCATGTGATTAA+TGG 0.197105 4_2:-50902080 Msa0605150:three_prime_UTR
GCTTGATACTGCATCAATAT+TGG 0.200433 4_2:+50902932 None:intergenic
CCCATGTTGCAATTTAAATA+AGG 0.207884 4_2:-50902236 Msa0605150:three_prime_UTR
TGAGAAATGACATCTATTTC+TGG 0.252631 4_2:+50904511 None:intergenic
TGTTGATACTGCATCAATAT+TGG 0.256072 4_2:+50902974 None:intergenic
TGAAAGTACTATAACATAAA+TGG 0.264411 4_2:+50902183 None:intergenic
TCACATGAACTCTTCAAAAT+AGG 0.279781 4_2:+50902087 None:intergenic
GAAGATGTATTTGGTGCATT+AGG 0.304395 4_2:+50903095 None:intergenic
CTTGATACTGCATCAATATT+GGG 0.311245 4_2:+50902933 None:intergenic
ATTGATGTAGTTGGTGCATT+AGG 0.312719 4_2:+50904205 None:intergenic
AAAAGTCATCAAGAAATAAA+TGG 0.316117 4_2:+50902312 None:intergenic
AAATAGGTTGGAGAAATCTT+TGG 0.320961 4_2:+50902008 None:intergenic
ACTTGATACTTCCTCAATCT+TGG 0.357838 4_2:+50904156 None:intergenic
GTGGTCTTGACTTTGGTTCA+TGG 0.366970 4_2:+50902853 None:intergenic
CACCTCACTCACAGAAGATA+TGG 0.369750 4_2:+50902998 None:intergenic
GAACCCACAGAAGATGTATT+TGG 0.374097 4_2:+50903086 None:intergenic
GTTGATACTGCATCAATATT+GGG 0.387116 4_2:+50902975 None:intergenic
TCTATTTCTGGAATGTTACT+TGG 0.402869 4_2:+50904523 None:intergenic
TCTTCCACTGAAAGTTGAGC+TGG 0.403497 4_2:+50904127 None:intergenic
ATGGATACTGCATCAGTATT+GGG 0.405249 4_2:+50903017 None:intergenic
TTCTTGTCACTAGGCTTGAC+TGG 0.411639 4_2:+50904595 None:intergenic
CAGACAACAACTTCCTCAAA+AGG 0.412884 4_2:-50904490 Msa0605150:CDS
TGTATCTTCCACTGAGAGTT+GGG 0.420266 4_2:+50902899 None:intergenic
TAGGAACTGCCTCCTGCCTA+TGG 0.426430 4_2:-50902542 Msa0605150:three_prime_UTR
AGATCCTGTCCATCCTCCTT+TGG 0.426961 4_2:+50902876 None:intergenic
AAATCAACTTACATTGCATA+AGG 0.428183 4_2:+50904049 None:intergenic
GTGTATCTTCCACTGAGAGT+TGG 0.442393 4_2:+50902898 None:intergenic
GGTGAAAGTGGTCTTGACTT+TGG 0.446897 4_2:+50902846 None:intergenic
GAACTAGGAGGCTTTAAATC+AGG 0.455562 4_2:+50903125 None:intergenic
GAACTAGGAGGCTTTAAATC+AGG 0.455562 4_2:+50904235 None:intergenic
GGTGAAAGTGGTCTTGACTT+TGG 0.459043 4_2:+50904070 None:intergenic
TTGCAATTTAAATAAGGAAA+AGG 0.459116 4_2:-50902230 Msa0605150:three_prime_UTR
GAATCAACTTACATTGCAAA+AGG 0.459172 4_2:+50902825 None:intergenic
TATGGATACTGCATCAGTAT+TGG 0.460775 4_2:+50903016 None:intergenic
ATCAACATCTTCTGTGGGTG+GGG 0.466478 4_2:-50902958 Msa0605150:CDS
ATCAACATCTTCTGTGGGTG+GGG 0.466478 4_2:-50903042 Msa0605150:CDS
TATCAACATCTTCTGTGGGT+GGG 0.486345 4_2:-50902959 Msa0605150:CDS
TATCAACATCTTCTGTGGGT+GGG 0.486345 4_2:-50903043 Msa0605150:CDS
TCTTCCACTGAGAGTTGGGC+TGG 0.488054 4_2:+50902903 None:intergenic
CCTTATTTAAATTGCAACAT+GGG 0.493826 4_2:+50902236 None:intergenic
TCACTAGGCTTGACTGGAGA+AGG 0.505013 4_2:+50904601 None:intergenic
GCATTAGGAGATGGTGAACT+AGG 0.505609 4_2:+50903110 None:intergenic
GCATTAGGAGATGGTGAACT+AGG 0.505609 4_2:+50904220 None:intergenic
AAAGCGGCTTACGCTGCAAA+AGG 0.509111 4_2:+50904451 None:intergenic
CTAACCTTGTCTGATTCCAT+AGG 0.511130 4_2:+50902526 None:intergenic
GTGGTCTTGACTTTGGCTCA+TGG 0.511247 4_2:+50904077 None:intergenic
ACCTTCCTTCAGACAATCCT+AGG 0.512572 4_2:-50902561 Msa0605150:exon
ATCAATATCCACATCTTCTG+TGG 0.513109 4_2:-50904188 Msa0605150:CDS
TACATTGCAAAAGGTGAAAG+TGG 0.514619 4_2:+50902834 None:intergenic
GAAGACACCCCACAGGATGA+TGG 0.516796 4_2:-50904109 Msa0605150:CDS
CTTGGAGCATCTGAAGAACT+AGG 0.518040 4_2:+50904541 None:intergenic
TACATTGCATAAGGTGAAAG+TGG 0.521440 4_2:+50904058 None:intergenic
ATCCACATCTTCTGTGGGTG+AGG 0.521943 4_2:-50904182 Msa0605150:CDS
GATGGAAGCAACTATGTGAA+TGG 0.524074 4_2:-50902350 Msa0605150:three_prime_UTR
CACATCTTCTGTGGGTGAGG+TGG 0.525593 4_2:-50904179 Msa0605150:CDS
TACACCAAAGGAGGATGGAC+AGG 0.532634 4_2:-50902880 Msa0605150:CDS
CACTAGGCTTGACTGGAGAA+GGG 0.537665 4_2:+50904602 None:intergenic
TTTATCTGTTTCTTGTCACT+AGG 0.538287 4_2:+50904586 None:intergenic
AAGGAAGGTGATGGTGATGC+AGG 0.540221 4_2:+50902575 None:intergenic
AGACAACAACTTCCTCAAAA+GGG 0.544213 4_2:-50904489 Msa0605150:CDS
GTATCAACATCTTCTGTGGG+TGG 0.545073 4_2:-50902960 Msa0605150:CDS
GTATCAACATCTTCTGTGGG+TGG 0.545073 4_2:-50903044 Msa0605150:CDS
ATAGGCAGGAGGCAGTTCCT+AGG 0.545779 4_2:+50902544 None:intergenic
TCCTTATTTAAATTGCAACA+TGG 0.549567 4_2:+50902235 None:intergenic
GATTCTGTCCATCATCCTGT+GGG 0.562158 4_2:+50904101 None:intergenic
TCATCAAGAAATAAATGGCA+TGG 0.563194 4_2:+50902317 None:intergenic
CCTTGTCTGATTCCATAGGC+AGG 0.563825 4_2:+50902530 None:intergenic
GATGTGGATATTGATGTAGT+TGG 0.564321 4_2:+50904196 None:intergenic
CTTCCACTGAAAGTTGAGCT+GGG 0.565860 4_2:+50904128 None:intergenic
TTGTTACTCAAATATGAAGA+TGG 0.571068 4_2:-50902368 Msa0605150:three_prime_UTR
TGCACCAAATACATCTTCTG+TGG 0.571071 4_2:-50903090 Msa0605150:CDS
AGATTCTGTCCATCATCCTG+TGG 0.575424 4_2:+50904100 None:intergenic
ATTGAGGAAGTATCAAGTAA+TGG 0.580305 4_2:-50904151 Msa0605150:CDS
GCATCTGAAGAACTAGGTGT+TGG 0.583270 4_2:+50904547 None:intergenic
TCAATATCCACATCTTCTGT+GGG 0.583412 4_2:-50904187 Msa0605150:CDS
TTGACTGGAGAAGGGGATGA+CGG 0.585281 4_2:+50904610 None:intergenic
CATGAACTCTTCAAAATAGG+TGG 0.587360 4_2:+50902090 None:intergenic
AGGTTGGAGAAATCTTTGGT+TGG 0.590449 4_2:+50902012 None:intergenic
ATCCATATCTTCTGTGAGTG+AGG 0.591930 4_2:-50903000 Msa0605150:CDS
GAAGATACACCAAAGGAGGA+TGG 0.594365 4_2:-50902885 Msa0605150:CDS
TGAGTAACAATCCTCCATGT+GGG 0.595668 4_2:+50902381 None:intergenic
TGGCCCAGCTCAACTTTCAG+TGG 0.601032 4_2:-50904131 Msa0605150:CDS
TCCTAGGATTGTCTGAAGGA+AGG 0.603155 4_2:+50902560 None:intergenic
CACCTCACCCACAGAAGATG+TGG 0.603210 4_2:+50904180 None:intergenic
GGGTGAGGTGGCCAAGATTG+AGG 0.606108 4_2:-50904167 Msa0605150:CDS
TGCAGTATCAACATCTTCTG+TGG 0.608160 4_2:-50902964 Msa0605150:CDS
TGCAGTATCAACATCTTCTG+TGG 0.608160 4_2:-50903048 Msa0605150:intron
AACAACTTCCTCAAAAGGGA+AGG 0.609863 4_2:-50904485 Msa0605150:CDS
ACTAGGCTTGACTGGAGAAG+GGG 0.613659 4_2:+50904603 None:intergenic
GCAGTATCAACATCTTCTGT+GGG 0.616304 4_2:-50902963 Msa0605150:CDS
GCAGTATCAACATCTTCTGT+GGG 0.616304 4_2:-50903047 Msa0605150:intron
CCTGCCTATGGAATCAGACA+AGG 0.616679 4_2:-50902530 Msa0605150:intron
GCACCAAATACATCTTCTGT+GGG 0.619349 4_2:-50903089 Msa0605150:intron
TTGAGTAACAATCCTCCATG+TGG 0.620376 4_2:+50902380 None:intergenic
ATTGATGCAGTATCAAGCAA+TGG 0.622304 4_2:-50902927 Msa0605150:CDS
TTCAGTGGAAGACACCCCAC+AGG 0.630088 4_2:-50904116 Msa0605150:CDS
AGTTTATGTAGCAACCCACA+TGG 0.631927 4_2:-50902395 Msa0605150:three_prime_UTR
GAAGGTGATGGTGATGCAGG+AGG 0.640994 4_2:+50902578 None:intergenic
GTATTTGGTGCATTAGGAGA+TGG 0.641520 4_2:+50903101 None:intergenic
TGGACCAGCCCAACTCTCAG+TGG 0.643488 4_2:-50902907 Msa0605150:CDS
AGTGGAAGATACACCAAAGG+AGG 0.647962 4_2:-50902889 Msa0605150:CDS
TTAGGAGATGGTGAACTAGG+AGG 0.652667 4_2:+50903113 None:intergenic
TTAGGAGATGGTGAACTAGG+AGG 0.652667 4_2:+50904223 None:intergenic
ACTGGAGAAGGGGATGACGG+TGG 0.659696 4_2:+50904613 None:intergenic
CAGTTCCTAGGATTGTCTGA+AGG 0.661742 4_2:+50902556 None:intergenic
CTCAGTGGAAGATACACCAA+AGG 0.671918 4_2:-50902892 Msa0605150:CDS
GTAGTTGGTGCATTAGGAGA+TGG 0.677079 4_2:+50904211 None:intergenic
GATTGTCTGAAGGAAGGTGA+TGG 0.681966 4_2:+50902566 None:intergenic
ATTCTGTCCATCATCCTGTG+GGG 0.704456 4_2:+50904102 None:intergenic
TGTCTGATTCCATAGGCAGG+AGG 0.705899 4_2:+50902533 None:intergenic
TTATGTAGCAACCCACATGG+AGG 0.728794 4_2:-50902392 Msa0605150:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATAATTGTGATATATTTTT+TGG - chr4_2:50904204-50904223 Msa0605150:CDS 15.0%
!! AAGAACTAAGAAAAAGTTAA+AGG + chr4_2:50902630-50902649 None:intergenic 20.0%
!!! ACAAACATTTTACAATTTCA+GGG + chr4_2:50902987-50903006 None:intergenic 20.0%
!!! AACAACATTTTACAATTTCA+TGG - chr4_2:50903319-50903338 Msa0605150:intron 20.0%
!! AGAAGAAATAAGAAAATTGA+TGG + chr4_2:50903855-50903874 None:intergenic 20.0%
!! AATAATGAATGAAGAATCTT+TGG + chr4_2:50903878-50903897 None:intergenic 20.0%
!! AAAAGTCATCAAGAAATAAA+TGG + chr4_2:50904338-50904357 None:intergenic 20.0%
!! TTGCAATTTAAATAAGGAAA+AGG - chr4_2:50904417-50904436 Msa0605150:intron 20.0%
!!! TGAAAGTACTATAACATAAA+TGG + chr4_2:50904467-50904486 None:intergenic 20.0%
! CAAATTAAAGAGGTTTAGAT+GGG + chr4_2:50902274-50902293 None:intergenic 25.0%
! AAATCAACTTACATTGCATA+AGG + chr4_2:50902601-50902620 None:intergenic 25.0%
! CTTTCTTCTATAATAAGGAA+TGG + chr4_2:50902666-50902685 None:intergenic 25.0%
! CTTATTATAGAAGAAAGAGA+GGG - chr4_2:50902669-50902688 Msa0605150:intron 25.0%
! TTATTATAGAAGAAAGAGAG+GGG - chr4_2:50902670-50902689 Msa0605150:intron 25.0%
!!! ATAACTGTGACTTTGATTTT+TGG - chr4_2:50902729-50902748 Msa0605150:intron 25.0%
!! GACAAACATTTTACAATTTC+AGG + chr4_2:50902988-50903007 None:intergenic 25.0%
!! CTAATTTGCCTATGAAATTT+AGG - chr4_2:50903116-50903135 Msa0605150:CDS 25.0%
! TAAAAAAATTGTCCTTGAGA+TGG - chr4_2:50903168-50903187 Msa0605150:intron 25.0%
! ATATGAAATTTACCATCTCA+AGG + chr4_2:50903183-50903202 None:intergenic 25.0%
! TTACGAAAGAAGTTAACTAA+GGG - chr4_2:50903288-50903307 Msa0605150:intron 25.0%
! GTATTTGTCAATTTGCAAAA+AGG - chr4_2:50903344-50903363 Msa0605150:intron 25.0%
! TATGTAAGATCAAAACTTTG+TGG - chr4_2:50903438-50903457 Msa0605150:intron 25.0%
!! TAAGAAAATTGATGGTAAGT+TGG + chr4_2:50903847-50903866 None:intergenic 25.0%
!!! ATATATTTTTTGGAGCGAAT+AGG - chr4_2:50904214-50904233 Msa0605150:CDS 25.0%
! TTGTTACTCAAATATGAAGA+TGG - chr4_2:50904279-50904298 Msa0605150:intron 25.0%
!!! TATTTCTTGATGACTTTTTG+AGG - chr4_2:50904340-50904359 Msa0605150:intron 25.0%
!! CCTTATTTAAATTGCAACAT+GGG + chr4_2:50904414-50904433 None:intergenic 25.0%
!! TCCTTATTTAAATTGCAACA+TGG + chr4_2:50904415-50904434 None:intergenic 25.0%
!! TTTTCTCATACTTAAAGAGT+GGG + chr4_2:50904501-50904520 None:intergenic 25.0%
!! ATTTTCTCATACTTAAAGAG+TGG + chr4_2:50904502-50904521 None:intergenic 25.0%
! TTTATCTGTTTCTTGTCACT+AGG + chr4_2:50902064-50902083 None:intergenic 30.0%
!! TCTATTTCTGGAATGTTACT+TGG + chr4_2:50902127-50902146 None:intergenic 30.0%
TGAGAAATGACATCTATTTC+TGG + chr4_2:50902139-50902158 None:intergenic 30.0%
ATCACCACAAAATTAGAAAG+CGG + chr4_2:50902215-50902234 None:intergenic 30.0%
CCAAATTAAAGAGGTTTAGA+TGG + chr4_2:50902275-50902294 None:intergenic 30.0%
CCATCTAAACCTCTTTAATT+TGG - chr4_2:50902272-50902291 Msa0605150:three_prime_UTR 30.0%
TGCTAAAGTAGTTCATAACA+AGG + chr4_2:50902326-50902345 None:intergenic 30.0%
GGAAAACAAACCACAAATTT+AGG + chr4_2:50902365-50902384 None:intergenic 30.0%
GCAGGTATATAAAATACACA+AGG + chr4_2:50902386-50902405 None:intergenic 30.0%
!! ATTGAGGAAGTATCAAGTAA+TGG - chr4_2:50902496-50902515 Msa0605150:intron 30.0%
CCTCTCTTTCTTCTATAATA+AGG + chr4_2:50902671-50902690 None:intergenic 30.0%
CCTTATTATAGAAGAAAGAG+AGG - chr4_2:50902668-50902687 Msa0605150:intron 30.0%
AAGTGAGTGAATAAGTCTTA+TGG - chr4_2:50902761-50902780 Msa0605150:intron 30.0%
TGGTAATTGATGAATGTACT+AGG - chr4_2:50902781-50902800 Msa0605150:intron 30.0%
ATTGATGAATGTACTAGGTT+AGG - chr4_2:50902786-50902805 Msa0605150:intron 30.0%
TAGTGCGAAATTTACTATTG+TGG - chr4_2:50902873-50902892 Msa0605150:CDS 30.0%
TTCCAAATTCGCAAAAATCA+GGG + chr4_2:50902958-50902977 None:intergenic 30.0%
TTTCCAAATTCGCAAAAATC+AGG + chr4_2:50902959-50902978 None:intergenic 30.0%
! ACTGTAAACTTTTAGTGGTA+GGG - chr4_2:50903019-50903038 Msa0605150:CDS 30.0%
ACATTGATGTAGGATTAACA+TGG + chr4_2:50903082-50903101 None:intergenic 30.0%
!! TTCATAGGCAAATTAGTCTT+TGG + chr4_2:50903112-50903131 None:intergenic 30.0%
TCTGAAGACCTAAATTTCAT+AGG + chr4_2:50903127-50903146 None:intergenic 30.0%
TTTAGTGATTGCAATTGTGA+AGG + chr4_2:50903152-50903171 None:intergenic 30.0%
TAGTTAACTTCTTTCGTAAG+AGG + chr4_2:50903287-50903306 None:intergenic 30.0%
CTTACGAAAGAAGTTAACTA+AGG - chr4_2:50903287-50903306 Msa0605150:intron 30.0%
TTTGTCAATTTGCAAAAAGG+AGG - chr4_2:50903347-50903366 Msa0605150:intron 30.0%
TTGTCAATTTGCAAAAAGGA+GGG - chr4_2:50903348-50903367 Msa0605150:intron 30.0%
! GACCAAATCATACAATTTTG+AGG - chr4_2:50903379-50903398 Msa0605150:intron 30.0%
GTCCTCAAAATTGTATGATT+TGG + chr4_2:50903384-50903403 None:intergenic 30.0%
!! AATCATACAATTTTGAGGAC+AGG - chr4_2:50903384-50903403 Msa0605150:intron 30.0%
GTTGATACTGCATCAATATT+GGG + chr4_2:50903591-50903610 None:intergenic 30.0%
TGTTGATACTGCATCAATAT+TGG + chr4_2:50903592-50903611 None:intergenic 30.0%
GTTGATACTGCATCAATATT+GGG + chr4_2:50903591-50903610 None:intergenic 30.0%
TGTTGATACTGCATCAATAT+TGG + chr4_2:50903592-50903611 None:intergenic 30.0%
CTTGATACTGCATCAATATT+GGG + chr4_2:50903717-50903736 None:intergenic 30.0%
GAATCAACTTACATTGCAAA+AGG + chr4_2:50903825-50903844 None:intergenic 30.0%
ATTATAGAAGAGAGAAAGAG+AGG - chr4_2:50903895-50903914 Msa0605150:intron 30.0%
! CTTATGCAAATGAACTTTTC+AGG - chr4_2:50904031-50904050 Msa0605150:intron 30.0%
!!! AAATGAACTTTTCAGGTATG+AGG - chr4_2:50904038-50904057 Msa0605150:intron 30.0%
TCATCAAGAAATAAATGGCA+TGG + chr4_2:50904333-50904352 None:intergenic 30.0%
CCCATGTTGCAATTTAAATA+AGG - chr4_2:50904411-50904430 Msa0605150:intron 30.0%
TCACATGAACTCTTCAAAAT+AGG + chr4_2:50904563-50904582 None:intergenic 30.0%
TGAAGAGTTCATGTGATTAA+TGG - chr4_2:50904567-50904586 Msa0605150:CDS 30.0%
AGACAACAACTTCCTCAAAA+GGG - chr4_2:50902158-50902177 Msa0605150:three_prime_UTR 35.0%
!! TAAGCCGCTTTCTAATTTTG+TGG - chr4_2:50902208-50902227 Msa0605150:three_prime_UTR 35.0%
TCATAGCTGCCAAATTAAAG+AGG + chr4_2:50902284-50902303 None:intergenic 35.0%
!! TCTTTAATTTGGCAGCTATG+AGG - chr4_2:50902283-50902302 Msa0605150:three_prime_UTR 35.0%
! TACTTTAGCACTTTTATCCG+TGG - chr4_2:50902336-50902355 Msa0605150:three_prime_UTR 35.0%
! ACCACAAATTTAGGATACCA+CGG + chr4_2:50902356-50902375 None:intergenic 35.0%
CTTTAAATCAGGATATCTGC+AGG + chr4_2:50902404-50902423 None:intergenic 35.0%
! ATTGATGTAGTTGGTGCATT+AGG + chr4_2:50902445-50902464 None:intergenic 35.0%
GATGTGGATATTGATGTAGT+TGG + chr4_2:50902454-50902473 None:intergenic 35.0%
ATCAATATCCACATCTTCTG+TGG - chr4_2:50902459-50902478 Msa0605150:intron 35.0%
TCAATATCCACATCTTCTGT+GGG - chr4_2:50902460-50902479 Msa0605150:intron 35.0%
ACTTGATACTTCCTCAATCT+TGG + chr4_2:50902494-50902513 None:intergenic 35.0%
TACATTGCATAAGGTGAAAG+TGG + chr4_2:50902592-50902611 None:intergenic 35.0%
!! AATAAGGAATGGAGAGCATT+TGG + chr4_2:50902655-50902674 None:intergenic 35.0%
!! TGATTAAGCCAAAAGCATCA+AGG - chr4_2:50902827-50902846 Msa0605150:intron 35.0%
TACTGATGCTTACAATTTCG+AGG + chr4_2:50902927-50902946 None:intergenic 35.0%
! GTCTCACTGTAAACTTTTAG+TGG - chr4_2:50903014-50903033 Msa0605150:CDS 35.0%
! CACTGTAAACTTTTAGTGGT+AGG - chr4_2:50903018-50903037 Msa0605150:CDS 35.0%
TGACATGTTAACTGAATACG+TGG - chr4_2:50903051-50903070 Msa0605150:intron 35.0%
AAGATCAAAACTTTGTGGAC+AGG - chr4_2:50903443-50903462 Msa0605150:intron 35.0%
TTCGTGGTATCAAAACTTTG+TGG - chr4_2:50903476-50903495 Msa0605150:intron 35.0%
!!! TGGTTTGTTTTCTTGTGTAC+AGG - chr4_2:50903496-50903515 Msa0605150:intron 35.0%
!! GAAGATGTATTTGGTGCATT+AGG + chr4_2:50903555-50903574 None:intergenic 35.0%
AAATACATCTTCTGTGGGTT+CGG - chr4_2:50903563-50903582 Msa0605150:intron 35.0%
ATGGATACTGCATCAGTATT+GGG + chr4_2:50903633-50903652 None:intergenic 35.0%
TATGGATACTGCATCAGTAT+TGG + chr4_2:50903634-50903653 None:intergenic 35.0%
GCTTGATACTGCATCAATAT+TGG + chr4_2:50903718-50903737 None:intergenic 35.0%
ATTGATGCAGTATCAAGCAA+TGG - chr4_2:50903720-50903739 Msa0605150:intron 35.0%
TACATTGCAAAAGGTGAAAG+TGG + chr4_2:50903816-50903835 None:intergenic 35.0%
ATTATGTACACTACGTACAC+TGG - chr4_2:50904178-50904197 Msa0605150:CDS 35.0%
CATGAACTCTTCAAAATAGG+TGG + chr4_2:50904560-50904579 None:intergenic 35.0%
CAGACAACAACTTCCTCAAA+AGG - chr4_2:50902157-50902176 Msa0605150:three_prime_UTR 40.0%
AACAACTTCCTCAAAAGGGA+AGG - chr4_2:50902162-50902181 Msa0605150:three_prime_UTR 40.0%
! GTTCATAACAAGGTATCTGC+AGG + chr4_2:50902316-50902335 None:intergenic 40.0%
TCCGTGGTATCCTAAATTTG+TGG - chr4_2:50902352-50902371 Msa0605150:three_prime_UTR 40.0%
!! GAACTAGGAGGCTTTAAATC+AGG + chr4_2:50902415-50902434 None:intergenic 40.0%
TATAGAAGAAAGAGAGGGGA+TGG - chr4_2:50902674-50902693 Msa0605150:intron 40.0%
! CCATGAATCCTTGATGCTTT+TGG + chr4_2:50902838-50902857 None:intergenic 40.0%
!! CCAAAAGCATCAAGGATTCA+TGG - chr4_2:50902835-50902854 Msa0605150:intron 40.0%
! GTCCCTGATTTTTGCGAATT+TGG - chr4_2:50902953-50902972 Msa0605150:CDS 40.0%
!! AGGCAAATTAGTCTTTGGTG+TGG + chr4_2:50903107-50903126 None:intergenic 40.0%
CAAATTAGCTCCTAGTGAGT+TGG - chr4_2:50903204-50903223 Msa0605150:intron 40.0%
!! TGCACTTTGAAACCACATCA+AGG + chr4_2:50903230-50903249 None:intergenic 40.0%
!! GAACTAGGAGGCTTTAAATC+AGG + chr4_2:50902415-50902434 None:intergenic 40.0%
!! GTATTTGGTGCATTAGGAGA+TGG + chr4_2:50903549-50903568 None:intergenic 40.0%
TGCACCAAATACATCTTCTG+TGG - chr4_2:50903557-50903576 Msa0605150:intron 40.0%
GCACCAAATACATCTTCTGT+GGG - chr4_2:50903558-50903577 Msa0605150:intron 40.0%
GAACCCACAGAAGATGTATT+TGG + chr4_2:50903564-50903583 None:intergenic 40.0%
TGCAGTATCAACATCTTCTG+TGG - chr4_2:50903599-50903618 Msa0605150:intron 40.0%
GCAGTATCAACATCTTCTGT+GGG - chr4_2:50903600-50903619 Msa0605150:intron 40.0%
TATCAACATCTTCTGTGGGT+GGG - chr4_2:50903604-50903623 Msa0605150:intron 40.0%
ATCCATATCTTCTGTGAGTG+AGG - chr4_2:50903647-50903666 Msa0605150:intron 40.0%
TGCAGTATCAACATCTTCTG+TGG - chr4_2:50903599-50903618 Msa0605150:intron 40.0%
GCAGTATCAACATCTTCTGT+GGG - chr4_2:50903600-50903619 Msa0605150:intron 40.0%
TATCAACATCTTCTGTGGGT+GGG - chr4_2:50903604-50903623 Msa0605150:intron 40.0%
TGTATCTTCCACTGAGAGTT+GGG + chr4_2:50903751-50903770 None:intergenic 40.0%
ACCATCCGAGTTCAATCAAA+CGG + chr4_2:50903978-50903997 None:intergenic 40.0%
CTAACCTTGTCTGATTCCAT+AGG + chr4_2:50904124-50904143 None:intergenic 40.0%
AGTTTATGTAGCAACCCACA+TGG - chr4_2:50904252-50904271 Msa0605150:intron 40.0%
TGAGTAACAATCCTCCATGT+GGG + chr4_2:50904269-50904288 None:intergenic 40.0%
TTGAGTAACAATCCTCCATG+TGG + chr4_2:50904270-50904289 None:intergenic 40.0%
GATGGAAGCAACTATGTGAA+TGG - chr4_2:50904297-50904316 Msa0605150:intron 40.0%
TTCTTGTCACTAGGCTTGAC+TGG + chr4_2:50902055-50902074 None:intergenic 45.0%
GCATCTGAAGAACTAGGTGT+TGG + chr4_2:50902103-50902122 None:intergenic 45.0%
! CTTGGAGCATCTGAAGAACT+AGG + chr4_2:50902109-50902128 None:intergenic 45.0%
! AAGAGACTCCTTCCCTTTTG+AGG + chr4_2:50902173-50902192 None:intergenic 45.0%
TTAGGAGATGGTGAACTAGG+AGG + chr4_2:50902427-50902446 None:intergenic 45.0%
GCATTAGGAGATGGTGAACT+AGG + chr4_2:50902430-50902449 None:intergenic 45.0%
! GTAGTTGGTGCATTAGGAGA+TGG + chr4_2:50902439-50902458 None:intergenic 45.0%
CTTCCACTGAAAGTTGAGCT+GGG + chr4_2:50902522-50902541 None:intergenic 45.0%
TCTTCCACTGAAAGTTGAGC+TGG + chr4_2:50902523-50902542 None:intergenic 45.0%
ATTCTGTCCATCATCCTGTG+GGG + chr4_2:50902548-50902567 None:intergenic 45.0%
GATTCTGTCCATCATCCTGT+GGG + chr4_2:50902549-50902568 None:intergenic 45.0%
AGATTCTGTCCATCATCCTG+TGG + chr4_2:50902550-50902569 None:intergenic 45.0%
! GGTGAAAGTGGTCTTGACTT+TGG + chr4_2:50902580-50902599 None:intergenic 45.0%
GATAGCTGTTCAGGACACAT+TGG - chr4_2:50902700-50902719 Msa0605150:intron 45.0%
GACAGGTTTAGCACAATTCG+TGG - chr4_2:50903460-50903479 Msa0605150:intron 45.0%
TTAGGAGATGGTGAACTAGG+AGG + chr4_2:50902427-50902446 None:intergenic 45.0%
GCATTAGGAGATGGTGAACT+AGG + chr4_2:50902430-50902449 None:intergenic 45.0%
GTATCAACATCTTCTGTGGG+TGG - chr4_2:50903603-50903622 Msa0605150:intron 45.0%
ATCAACATCTTCTGTGGGTG+GGG - chr4_2:50903605-50903624 Msa0605150:intron 45.0%
CACCTCACTCACAGAAGATA+TGG + chr4_2:50903652-50903671 None:intergenic 45.0%
GTATCAACATCTTCTGTGGG+TGG - chr4_2:50903603-50903622 Msa0605150:intron 45.0%
ATCAACATCTTCTGTGGGTG+GGG - chr4_2:50903605-50903624 Msa0605150:intron 45.0%
GTGTATCTTCCACTGAGAGT+TGG + chr4_2:50903752-50903771 None:intergenic 45.0%
CTCAGTGGAAGATACACCAA+AGG - chr4_2:50903755-50903774 Msa0605150:intron 45.0%
AGTGGAAGATACACCAAAGG+AGG - chr4_2:50903758-50903777 Msa0605150:intron 45.0%
GAAGATACACCAAAGGAGGA+TGG - chr4_2:50903762-50903781 Msa0605150:intron 45.0%
! GTGGTCTTGACTTTGGTTCA+TGG + chr4_2:50903797-50903816 None:intergenic 45.0%
! GGTGAAAGTGGTCTTGACTT+TGG + chr4_2:50902580-50902599 None:intergenic 45.0%
GGAAGCCGTTTGATTGAACT+CGG - chr4_2:50903970-50903989 Msa0605150:intron 45.0%
GATTGTCTGAAGGAAGGTGA+TGG + chr4_2:50904084-50904103 None:intergenic 45.0%
ACCTTCCTTCAGACAATCCT+AGG - chr4_2:50904086-50904105 Msa0605150:CDS 45.0%
TCCTAGGATTGTCTGAAGGA+AGG + chr4_2:50904090-50904109 None:intergenic 45.0%
CAGTTCCTAGGATTGTCTGA+AGG + chr4_2:50904094-50904113 None:intergenic 45.0%
TTATGTAGCAACCCACATGG+AGG - chr4_2:50904255-50904274 Msa0605150:intron 45.0%
TTGACTGGAGAAGGGGATGA+CGG + chr4_2:50902040-50902059 None:intergenic 50.0%
ACTAGGCTTGACTGGAGAAG+GGG + chr4_2:50902047-50902066 None:intergenic 50.0%
CACTAGGCTTGACTGGAGAA+GGG + chr4_2:50902048-50902067 None:intergenic 50.0%
TCACTAGGCTTGACTGGAGA+AGG + chr4_2:50902049-50902068 None:intergenic 50.0%
AAAGCGGCTTACGCTGCAAA+AGG + chr4_2:50902199-50902218 None:intergenic 50.0%
ATCCACATCTTCTGTGGGTG+AGG - chr4_2:50902465-50902484 Msa0605150:intron 50.0%
! GTGGTCTTGACTTTGGCTCA+TGG + chr4_2:50902573-50902592 None:intergenic 50.0%
GGATGGTGAGATAGCTGTTC+AGG - chr4_2:50902691-50902710 Msa0605150:intron 50.0%
TGGTGTGGCGACATTGATGT+AGG + chr4_2:50903092-50903111 None:intergenic 50.0%
CACATCAAGGCCAACTCACT+AGG + chr4_2:50903217-50903236 None:intergenic 50.0%
!! CTAGTGAGTTGGCCTTGATG+TGG - chr4_2:50903215-50903234 Msa0605150:intron 50.0%
TACACCAAAGGAGGATGGAC+AGG - chr4_2:50903767-50903786 Msa0605150:intron 50.0%
AGATCCTGTCCATCCTCCTT+TGG + chr4_2:50903774-50903793 None:intergenic 50.0%
TCCTTGACCTTGGGGAATTC+AGG + chr4_2:50903923-50903942 None:intergenic 50.0%
TGCAGGATTCCTTGACCTTG+GGG + chr4_2:50903931-50903950 None:intergenic 50.0%
CTGCAGGATTCCTTGACCTT+GGG + chr4_2:50903932-50903951 None:intergenic 50.0%
ACTGCAGGATTCCTTGACCT+TGG + chr4_2:50903933-50903952 None:intergenic 50.0%
CAGTCATGCAGTCACTGCAT+TGG - chr4_2:50903949-50903968 Msa0605150:intron 50.0%
GCCGTTTGATTGAACTCGGA+TGG - chr4_2:50903974-50903993 Msa0605150:intron 50.0%
! AAGGAAGGTGATGGTGATGC+AGG + chr4_2:50904075-50904094 None:intergenic 50.0%
TGTCTGATTCCATAGGCAGG+AGG + chr4_2:50904117-50904136 None:intergenic 50.0%
CCTTGTCTGATTCCATAGGC+AGG + chr4_2:50904120-50904139 None:intergenic 50.0%
CCTGCCTATGGAATCAGACA+AGG - chr4_2:50904117-50904136 Msa0605150:CDS 50.0%
CACCTCACCCACAGAAGATG+TGG + chr4_2:50902470-50902489 None:intergenic 55.0%
CACATCTTCTGTGGGTGAGG+TGG - chr4_2:50902468-50902487 Msa0605150:intron 55.0%
TGGCCCAGCTCAACTTTCAG+TGG - chr4_2:50902516-50902535 Msa0605150:intron 55.0%
TTCAGTGGAAGACACCCCAC+AGG - chr4_2:50902531-50902550 Msa0605150:three_prime_UTR 55.0%
GAAGACACCCCACAGGATGA+TGG - chr4_2:50902538-50902557 Msa0605150:three_prime_UTR 55.0%
TCTTCCACTGAGAGTTGGGC+TGG + chr4_2:50903747-50903766 None:intergenic 55.0%
AGAGGAGCCTGAATTCCCCA+AGG - chr4_2:50903913-50903932 Msa0605150:intron 55.0%
GCCTGAATTCCCCAAGGTCA+AGG - chr4_2:50903919-50903938 Msa0605150:intron 55.0%
TGCAGTGACTGCATGACTGC+AGG + chr4_2:50903948-50903967 None:intergenic 55.0%
! GAAGGTGATGGTGATGCAGG+AGG + chr4_2:50904072-50904091 None:intergenic 55.0%
ATAGGCAGGAGGCAGTTCCT+AGG + chr4_2:50904106-50904125 None:intergenic 55.0%
TAGGAACTGCCTCCTGCCTA+TGG - chr4_2:50904105-50904124 Msa0605150:CDS 55.0%
! ACTGGAGAAGGGGATGACGG+TGG + chr4_2:50902037-50902056 None:intergenic 60.0%
GGGTGAGGTGGCCAAGATTG+AGG - chr4_2:50902480-50902499 Msa0605150:intron 60.0%
TGGACCAGCCCAACTCTCAG+TGG - chr4_2:50903740-50903759 Msa0605150:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 50902019 50904650 50902019 ID=Msa0605150;Name=Msa0605150
chr4_2 mRNA 50902019 50904650 50902019 ID=Msa0605150-mRNA-1;Parent=Msa0605150;Name=Msa0605150-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0.4|0.33|0.5|0.6|0.16|6|446|244
chr4_2 exon 50902019 50902433 50902019 ID=Msa0605150-mRNA-1:exon:12159;Parent=Msa0605150-mRNA-1
chr4_2 exon 50902531 50902616 50902531 ID=Msa0605150-mRNA-1:exon:12158;Parent=Msa0605150-mRNA-1
chr4_2 exon 50902837 50903065 50902837 ID=Msa0605150-mRNA-1:exon:12157;Parent=Msa0605150-mRNA-1
chr4_2 exon 50903090 50903151 50903090 ID=Msa0605150-mRNA-1:exon:12156;Parent=Msa0605150-mRNA-1
chr4_2 exon 50904061 50904261 50904061 ID=Msa0605150-mRNA-1:exon:12155;Parent=Msa0605150-mRNA-1
chr4_2 exon 50904463 50904650 50904463 ID=Msa0605150-mRNA-1:exon:12154;Parent=Msa0605150-mRNA-1
chr4_2 CDS 50904463 50904650 50904463 ID=Msa0605150-mRNA-1:cds;Parent=Msa0605150-mRNA-1
chr4_2 CDS 50904061 50904261 50904061 ID=Msa0605150-mRNA-1:cds;Parent=Msa0605150-mRNA-1
chr4_2 CDS 50903090 50903151 50903090 ID=Msa0605150-mRNA-1:cds;Parent=Msa0605150-mRNA-1
chr4_2 CDS 50902837 50903065 50902837 ID=Msa0605150-mRNA-1:cds;Parent=Msa0605150-mRNA-1
chr4_2 CDS 50902562 50902616 50902562 ID=Msa0605150-mRNA-1:cds;Parent=Msa0605150-mRNA-1
chr4_2 three_prime_UTR 50902531 50902561 50902531 ID=Msa0605150-mRNA-1:three_prime_utr;Parent=Msa0605150-mRNA-1
chr4_2 three_prime_UTR 50902019 50902433 50902019 ID=Msa0605150-mRNA-1:three_prime_utr;Parent=Msa0605150-mRNA-1
Gene Sequence

>Msa0605150

TATGATGATTTAAAACCACCGTCATCCCCTTCTCCAGTCAAGCCTAGTGACAAGAAACAGATAAATATCAGTGATGCAGTGCCAACACCTAGTTCTTCAGATGCTCCAAGTAACATTCCAGAAATAGATGTCATTTCTCAGACAACAACTTCCTCAAAAGGGAAGGAGTCTCTTTCTCCTTTTGCAGCATATCCTGATTTAAAGCCTCCTAGTTCACCATCTCCTAATGCACCAACTACATCAATATCCACATCTTCTGTGGGTGAGGTGGCCAAGATTGAGGAAGTATCAAGTAATGGCCCAGCTCAACTTTCAGTGGAAGACACCCCACAGGATGATGGACAGAATCTCCATGAGCCAAAGTCAAGACCACTTTCACCTTATGCAATGTATCCTGATTTAAAGCCTCCTAGTTCACCATCTCCTAATGCACCAAATACATCTTCTGTGGTATCAACATCTTCTGTGGGTGGGGTGCCCAATACTGATGCAGTATCCATATCTTCTGTGAGTGAGGTGCCCAATATTGATGCAGTATCAACATCTTCTGTGGGTGGGGTGCCCAATATTGATGCAGTATCAAGCAATGGACCAGCCCAACTCTCAGTGGAAGATACACCAAAGGAGGATGGACAGGATCTCCATGAACCAAAGTCAAGACCACTTTCACCTTTTGCAATGTATGAGGACTTGAAGCCTCCTGCATCACCATCACCTTCCTTCAGACAATCCTAG

Protein sequence

>Msa0605150

YDDLKPPSSPSPVKPSDKKQINISDAVPTPSSSDAPSNIPEIDVISQTTTSSKGKESLSPFAAYPDLKPPSSPSPNAPTTSISTSSVGEVAKIEEVSSNGPAQLSVEDTPQDDGQNLHEPKSRPLSPYAMYPDLKPPSSPSPNAPNTSSVVSTSSVGGVPNTDAVSISSVSEVPNIDAVSTSSVGGVPNIDAVSSNGPAQLSVEDTPKEDGQDLHEPKSRPLSPFAMYEDLKPPASPSPSFRQS*