AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1405990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1405990 MtrunA17_Chr4g0032081 97.619 378 9 0 1 378 1 378 0.0 743
Msa1405990 MtrunA17_Chr4g0034391 26.199 271 170 9 91 345 71 327 2.33e-17 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1405990 AT3G46780.1 62.465 357 114 7 18 368 22 364 1.33e-144 420
Msa1405990 AT3G18890.1 24.806 258 166 8 102 345 84 327 7.80e-15 76.6

Find 85 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATAGTAATGTTTATCTT+TGG 0.289226 tig0023178:+2570 None:intergenic
CATAGACATTGAACCTTGTT+TGG 0.291322 tig0023178:+2409 None:intergenic
AAAGTTCGTCTACACGCTTC+AGG 0.292266 tig0023178:+232 None:intergenic
CCTTCGACGGTATTTGTTGC+TGG 0.292997 tig0023178:-2171 Msa1405990:CDS
TCTTATAATGTGGTTGTCTT+AGG 0.298572 tig0023178:-888 Msa1405990:CDS
GGAGGGTCATTTCCATCATT+TGG 0.308563 tig0023178:-2372 Msa1405990:CDS
TCGTCTTGCTTCTCAATATA+AGG 0.316319 tig0023178:-2046 Msa1405990:intron
GAAGGATCCTTCTTCCTTGC+AGG 0.319646 tig0023178:+2189 None:intergenic
ACACGCTTCAGGGGAGCATT+TGG 0.321580 tig0023178:+243 None:intergenic
TCATTTCCATCATTTGGATT+AGG 0.331642 tig0023178:-2366 Msa1405990:CDS
ACTTGATTCTGCTCAGGAAT+TGG 0.345531 tig0023178:-2070 Msa1405990:CDS
GTAATGTTTATCTTTGGCTT+TGG 0.350142 tig0023178:+2576 None:intergenic
TCTTTGCCAGGTTTGTCATT+TGG 0.367736 tig0023178:-2216 Msa1405990:CDS
AACTCTAATAATAACCCTTT+CGG 0.379619 tig0023178:-2300 Msa1405990:CDS
GACGTGGAGACCTCAGTTGC+TGG 0.382640 tig0023178:+1161 None:intergenic
TTTGGACCGTTAATCTAGTT+TGG 0.388044 tig0023178:+2594 None:intergenic
TTAATCTAGTTTGGTGTTTG+TGG 0.398196 tig0023178:+2603 None:intergenic
CACGCTTCAGGGGAGCATTT+GGG 0.403880 tig0023178:+244 None:intergenic
AACCCTTTCGGATTCGACTT+TGG 0.404280 tig0023178:-2288 Msa1405990:CDS
TGACTTCTTTGATCCCTGTT+GGG 0.407851 tig0023178:-2251 Msa1405990:CDS
TCAACCTACAATGTACTTGA+TGG 0.408054 tig0023178:-1050 Msa1405990:CDS
TCCTGAGCAGAATCAAGTTC+AGG 0.410852 tig0023178:+2075 None:intergenic
TACTTTATAGTCGTTCGAAC+CGG 0.411446 tig0023178:+854 None:intergenic
GTATTTGTTGCTGGTGCTAC+TGG 0.412386 tig0023178:-2162 Msa1405990:CDS
TAATCTAGTTTGGTGTTTGT+GGG 0.423617 tig0023178:+2604 None:intergenic
GTGACTTCTTTGATCCCTGT+TGG 0.430673 tig0023178:-2252 Msa1405990:CDS
GAAGATATTGTTGAAGAAAG+AGG 0.437771 tig0023178:+1022 None:intergenic
CAAACACCAAACTAGATTAA+CGG 0.447152 tig0023178:-2600 Msa1405990:five_prime_UTR
CTTAGGATGAGATAAAGAAT+TGG 0.448913 tig0023178:+2446 None:intergenic
AGATGCCTTGCAAGTAATTC+AGG 0.449862 tig0023178:-1138 Msa1405990:CDS
TCCTGAACTTGATTCTGCTC+AGG 0.455608 tig0023178:-2076 Msa1405990:CDS
AGTTTGATGAACCATTTGTT+TGG 0.455793 tig0023178:+2319 None:intergenic
TGGTTCCTAAAATTCAACTT+AGG 0.457751 tig0023178:+2429 None:intergenic
CATTGCACAGACTTTGCTTA+GGG 0.461014 tig0023178:-2124 Msa1405990:CDS
AGCCACCAACGATGCTATCC+TGG 0.462070 tig0023178:+714 None:intergenic
GACTCCATAGCAAAAGCAAT+AGG 0.462780 tig0023178:-1230 Msa1405990:CDS
GCATTGCACAGACTTTGCTT+AGG 0.462895 tig0023178:-2125 Msa1405990:CDS
AACAAAGAGTGTGAACTTGT+TGG 0.472362 tig0023178:-2510 Msa1405990:five_prime_UTR
ATTCAGGCTGCTCAGCTAGC+AGG 0.485979 tig0023178:-1122 Msa1405990:CDS
ACCAAAGTGGTTGTCACCAT+TGG 0.489290 tig0023178:-1200 Msa1405990:CDS
TCAAGAGTTCTTGCAGAAAG+TGG 0.490402 tig0023178:-976 Msa1405990:CDS
TAAAGAATTGGATGAAAGAG+TGG 0.503514 tig0023178:+2458 None:intergenic
AAGTTCGTCTACACGCTTCA+GGG 0.503548 tig0023178:+233 None:intergenic
GATGCCATCAAGTACATTGT+AGG 0.505770 tig0023178:+1046 None:intergenic
ACTCTCCGGCGCAAAATCAT+CGG 0.509928 tig0023178:+911 None:intergenic
TTCCAAAGTCGAATCCGAAA+GGG 0.516074 tig0023178:+2286 None:intergenic
CACAGACTTTGCTTAGGGAA+GGG 0.523241 tig0023178:-2119 Msa1405990:CDS
GAAGGGTTTAGTGTTAGAGC+TGG 0.524692 tig0023178:-2102 Msa1405990:CDS
ATCAAGTACATTGTAGGTTG+AGG 0.527543 tig0023178:+1052 None:intergenic
GGGATCAAAGAAGTCACATC+AGG 0.527653 tig0023178:+2258 None:intergenic
GCACAGACTTTGCTTAGGGA+AGG 0.531835 tig0023178:-2120 Msa1405990:CDS
AATAGACAAAGGTTGAGACT+TGG 0.532124 tig0023178:+998 None:intergenic
TGGAAGTCCTGCAAGGAAGA+AGG 0.540638 tig0023178:-2196 Msa1405990:CDS
ATCTTAACTATAACCATCCA+TGG 0.543508 tig0023178:-2484 Msa1405990:exon
GCTGGTGCTACTGGTCAAGC+TGG 0.548502 tig0023178:-2153 Msa1405990:CDS
CACACAGGTTGCAGAAAACA+AGG 0.552585 tig0023178:-677 Msa1405990:intron
GCCGGAGAGTTCTTATAATG+TGG 0.563804 tig0023178:-898 Msa1405990:CDS
ATAGGTTGTGCAAGTGTACT+CGG 0.564585 tig0023178:-268 Msa1405990:intron
GAAAGAGTGGGAACCATGGA+TGG 0.564627 tig0023178:+2471 None:intergenic
GTCCAGGATAGCATCGTTGG+TGG 0.569990 tig0023178:-716 Msa1405990:CDS
TTTCCAAAGTCGAATCCGAA+AGG 0.570601 tig0023178:+2285 None:intergenic
ACCAATGGTGACAACCACTT+TGG 0.574757 tig0023178:+1199 None:intergenic
AAAGTCCAGGATAGCATCGT+TGG 0.579546 tig0023178:-719 Msa1405990:CDS
TTATATAGGTAACAAAGTCC+AGG 0.589414 tig0023178:-732 Msa1405990:intron
GGACTTCCAAATGACAAACC+TGG 0.590602 tig0023178:+2210 None:intergenic
AAAGAATTGGATGAAAGAGT+GGG 0.597103 tig0023178:+2459 None:intergenic
TCAGATTATATCAAACGAAG+AGG 0.598598 tig0023178:-1294 Msa1405990:intron
TACTTGCAAGGCATCTGACG+TGG 0.604597 tig0023178:+1145 None:intergenic
ACCATTGGTCTCACAGAGAA+CGG 0.605549 tig0023178:-1185 Msa1405990:CDS
AGCAGCCTGAATTACTTGCA+AGG 0.614147 tig0023178:+1133 None:intergenic
ACCGTTCTCTGTGAGACCAA+TGG 0.615314 tig0023178:+1184 None:intergenic
ACCACATTATAAGAACTCTC+CGG 0.622153 tig0023178:+897 None:intergenic
TGTCATTTGGAAGTCCTGCA+AGG 0.633906 tig0023178:-2203 Msa1405990:CDS
AAGAACTCTTGAATAGACAA+AGG 0.641968 tig0023178:+987 None:intergenic
AGTTCGTCTACACGCTTCAG+GGG 0.644617 tig0023178:+234 None:intergenic
AGAGAACGGTCCAGCAACTG+AGG 0.645643 tig0023178:-1171 Msa1405990:CDS
CCAGCAACAAATACCGTCGA+AGG 0.645802 tig0023178:+2171 None:intergenic
AATAGGCAATGCAACCAAAG+TGG 0.658723 tig0023178:-1213 Msa1405990:CDS
AAGGAAGAAGGATCCTTCGA+CGG 0.666161 tig0023178:-2184 Msa1405990:CDS
GTCTTAGGCGAAGAAAACAC+CGG 0.671556 tig0023178:-873 Msa1405990:CDS
GGATGAAAGAGTGGGAACCA+TGG 0.674227 tig0023178:+2467 None:intergenic
TGATGTCTTCTCCAACACAC+AGG 0.677746 tig0023178:-692 Msa1405990:CDS
CATCGTAGATGACTGCAACG+TGG 0.714845 tig0023178:+1093 None:intergenic
TAAGCAAAGTCTGTGCAATG+CGG 0.730043 tig0023178:+2127 None:intergenic
GTCATCTACGATGAAAACAA+CGG 0.733428 tig0023178:-1083 Msa1405990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATGAAATTTTTCAT+TGG - tig0023178:1267-1286 Msa1405990:CDS 10.0%
!! TTCTTAATCAATCATTAATT+TGG - tig0023178:606-625 Msa1405990:intron 15.0%
!! ATAAAAAAATTGAGTAAGTA+GGG + tig0023178:1170-1189 None:intergenic 15.0%
!! AACATAGTAATGTTTATCTT+TGG + tig0023178:48-67 None:intergenic 20.0%
!! AATTTGGATTATTAATGATC+AGG - tig0023178:622-641 Msa1405990:intron 20.0%
!!! AGAAAATAAGAGTATGTTTA+AGG + tig0023178:916-935 None:intergenic 20.0%
!! AATTTAATCTTTCAAACCTT+TGG + tig0023178:1134-1153 None:intergenic 20.0%
!! GATAAAAAAATTGAGTAAGT+AGG + tig0023178:1171-1190 None:intergenic 20.0%
!!! ACTCAATTTTTTTATCTAAC+AGG - tig0023178:1175-1194 Msa1405990:CDS 20.0%
!!! AATTTTTCATTGGAGTTAAT+TGG - tig0023178:1277-1296 Msa1405990:CDS 20.0%
!!! ATTTTTCATTGGAGTTAATT+GGG - tig0023178:1278-1297 Msa1405990:CDS 20.0%
!!! AATACTTTTTGAGAAAATGA+TGG - tig0023178:1857-1876 Msa1405990:intron 20.0%
!! AAACAATAGCTAAAATCAAA+TGG - tig0023178:2295-2314 Msa1405990:CDS 20.0%
!!! TGTTTTACAACATCAATAAT+AGG - tig0023178:2440-2459 Msa1405990:CDS 20.0%
!!! CAATAATAGGTGAATAATTT+TGG - tig0023178:2453-2472 Msa1405990:CDS 20.0%
!!! CAACTATAGAACATGTTTTT+TGG + tig0023178:84-103 None:intergenic 25.0%
! AATGTCTATGCTAAAAAATC+TGG - tig0023178:219-238 Msa1405990:intron 25.0%
! AACTCTAATAATAACCCTTT+CGG - tig0023178:315-334 Msa1405990:intron 25.0%
!! TTAATCACTGACATTTTCTT+TGG - tig0023178:751-770 Msa1405990:intron 25.0%
! ATTTCATCACTAAACTCAAA+AGG - tig0023178:829-848 Msa1405990:intron 25.0%
! TTTCATCACTAAACTCAAAA+GGG - tig0023178:830-849 Msa1405990:intron 25.0%
!! TAAGAGTATGTTTAAGGAAA+AGG + tig0023178:910-929 None:intergenic 25.0%
! TCAATTAATTACACTTCTAG+AGG - tig0023178:935-954 Msa1405990:CDS 25.0%
! GAATGATAAAAGGATCAAAT+TGG - tig0023178:957-976 Msa1405990:CDS 25.0%
! AAATATTAGGAAGTTAGCTA+GGG - tig0023178:1081-1100 Msa1405990:CDS 25.0%
! TTATCTAACAGGTAATTTCA+TGG - tig0023178:1186-1205 Msa1405990:CDS 25.0%
!! TTTTTCATTGGAGTTAATTG+GGG - tig0023178:1279-1298 Msa1405990:CDS 25.0%
! AGTAAAGGAAGGTTAAAAAA+AGG + tig0023178:1822-1841 None:intergenic 25.0%
! ACAAATAAGAAAGTAAAGGA+AGG + tig0023178:1833-1852 None:intergenic 25.0%
! AGCAACAAATAAGAAAGTAA+AGG + tig0023178:1837-1856 None:intergenic 25.0%
! GAAAATGATGGTTGTTATAT+AGG - tig0023178:1869-1888 Msa1405990:intron 25.0%
!! TAATCTAGTTTGGTGTTTGT+GGG + tig0023178:14-33 None:intergenic 30.0%
!! TTAATCTAGTTTGGTGTTTG+TGG + tig0023178:15-34 None:intergenic 30.0%
CAAACACCAAACTAGATTAA+CGG - tig0023178:15-34 Msa1405990:CDS 30.0%
! GTAATGTTTATCTTTGGCTT+TGG + tig0023178:42-61 None:intergenic 30.0%
ATCTTAACTATAACCATCCA+TGG - tig0023178:131-150 Msa1405990:intron 30.0%
AAAGAATTGGATGAAAGAGT+GGG + tig0023178:159-178 None:intergenic 30.0%
TAAAGAATTGGATGAAAGAG+TGG + tig0023178:160-179 None:intergenic 30.0%
CTTAGGATGAGATAAAGAAT+TGG + tig0023178:172-191 None:intergenic 30.0%
!! CTCATCCTAAGTTGAATTTT+AGG - tig0023178:181-200 Msa1405990:intron 30.0%
TGGTTCCTAAAATTCAACTT+AGG + tig0023178:189-208 None:intergenic 30.0%
!! TGAATTTTAGGAACCAAACA+AGG - tig0023178:193-212 Msa1405990:intron 30.0%
TCATTTCCATCATTTGGATT+AGG - tig0023178:249-268 Msa1405990:CDS 30.0%
! TGGTCTTTTTCTTCATCTTT+TGG + tig0023178:279-298 None:intergenic 30.0%
GAAGAAAAAGACCAAACAAA+TGG - tig0023178:285-304 Msa1405990:intron 30.0%
AGTTTGATGAACCATTTGTT+TGG + tig0023178:299-318 None:intergenic 30.0%
!! GTATGCAACATCGTTTTTAT+AGG + tig0023178:650-669 None:intergenic 30.0%
TGCATACAATCTAGTATCAA+TGG - tig0023178:663-682 Msa1405990:intron 30.0%
AATGACATAAACATCAACGT+CGG + tig0023178:804-823 None:intergenic 30.0%
! ACTTCTAGAGGAATGATAAA+AGG - tig0023178:947-966 Msa1405990:CDS 30.0%
TCTTGATAAAAAAGTTCCCA+TGG - tig0023178:1052-1071 Msa1405990:CDS 30.0%
CCTAATATTTCTTGTTCCAT+GGG + tig0023178:1071-1090 None:intergenic 30.0%
TCCTAATATTTCTTGTTCCA+TGG + tig0023178:1072-1091 None:intergenic 30.0%
GAAATATTAGGAAGTTAGCT+AGG - tig0023178:1080-1099 Msa1405990:CDS 30.0%
AATATTAGGAAGTTAGCTAG+GGG - tig0023178:1082-1101 Msa1405990:CDS 30.0%
! TTTGGAGCAAGAAATTACAT+GGG + tig0023178:1116-1135 None:intergenic 30.0%
CAACAATTAAAACATGACAC+TGG - tig0023178:1231-1250 Msa1405990:CDS 30.0%
TCAGATTATATCAAACGAAG+AGG - tig0023178:1321-1340 Msa1405990:intron 30.0%
GAAGATATTGTTGAAGAAAG+AGG + tig0023178:1596-1615 None:intergenic 30.0%
AAGAACTCTTGAATAGACAA+AGG + tig0023178:1631-1650 None:intergenic 30.0%
!!! GGTCAAACATGTTTTGATTA+AGG + tig0023178:1686-1705 None:intergenic 30.0%
TCTTATAATGTGGTTGTCTT+AGG - tig0023178:1727-1746 Msa1405990:intron 30.0%
TTATATAGGTAACAAAGTCC+AGG - tig0023178:1883-1902 Msa1405990:intron 30.0%
TTAGATTAATCCAATGACCA+AGG + tig0023178:2061-2080 None:intergenic 30.0%
! GAAGCTTTTTATTGACCAAT+AGG - tig0023178:2329-2348 Msa1405990:CDS 30.0%
!!! TTTGGTTTTTCTTCTAGTTG+AGG - tig0023178:2471-2490 Msa1405990:exon 30.0%
! TTTTCTTTACAGCACTATTC+CGG - tig0023178:2516-2535 Msa1405990:five_prime_UTR 30.0%
TTTCTCCAATATTTCAGCAT+AGG + tig0023178:2560-2579 None:intergenic 30.0%
TTTGGACCGTTAATCTAGTT+TGG + tig0023178:24-43 None:intergenic 35.0%
! AACAAAGAGTGTGAACTTGT+TGG - tig0023178:105-124 Msa1405990:intron 35.0%
CATAGACATTGAACCTTGTT+TGG + tig0023178:209-228 None:intergenic 35.0%
GTCTATGCTAAAAAATCTGG+AGG - tig0023178:222-241 Msa1405990:intron 35.0%
TATGCTAAAAAATCTGGAGG+AGG - tig0023178:225-244 Msa1405990:intron 35.0%
ATGCTAAAAAATCTGGAGGA+GGG - tig0023178:226-245 Msa1405990:intron 35.0%
! GGTTTTCCTAATCCAAATGA+TGG + tig0023178:258-277 None:intergenic 35.0%
TCGTCTTGCTTCTCAATATA+AGG - tig0023178:569-588 Msa1405990:intron 35.0%
!! TCAAATTGGCCTTTGTGTAA+TGG - tig0023178:971-990 Msa1405990:CDS 35.0%
ATTCATCAGCTGCATTTGAT+AGG + tig0023178:1000-1019 None:intergenic 35.0%
CCCATGGAACAAGAAATATT+AGG - tig0023178:1068-1087 Msa1405990:CDS 35.0%
ATATTAGGAAGTTAGCTAGG+GGG - tig0023178:1083-1102 Msa1405990:CDS 35.0%
!! CTTTGGAGCAAGAAATTACA+TGG + tig0023178:1117-1136 None:intergenic 35.0%
CATGTAATTTCTTGCTCCAA+AGG - tig0023178:1115-1134 Msa1405990:CDS 35.0%
!! ATTGCCTATTGCTTTTGCTA+TGG + tig0023178:1392-1411 None:intergenic 35.0%
GTCATCTACGATGAAAACAA+CGG - tig0023178:1532-1551 Msa1405990:intron 35.0%
ATCAAGTACATTGTAGGTTG+AGG + tig0023178:1566-1585 None:intergenic 35.0%
TCAACCTACAATGTACTTGA+TGG - tig0023178:1565-1584 Msa1405990:intron 35.0%
AATAGACAAAGGTTGAGACT+TGG + tig0023178:1620-1639 None:intergenic 35.0%
ACCACATTATAAGAACTCTC+CGG + tig0023178:1721-1740 None:intergenic 35.0%
TACTTTATAGTCGTTCGAAC+CGG + tig0023178:1764-1783 None:intergenic 35.0%
! GGTATCTGTTTTACATTAGC+TGG - tig0023178:1959-1978 Msa1405990:intron 35.0%
ATATCTCGACCAAACAACTT+AGG - tig0023178:2095-2114 Msa1405990:CDS 35.0%
GAAAGCCTATGCTGAAATAT+TGG - tig0023178:2552-2571 Msa1405990:five_prime_UTR 35.0%
TTCCAAAGTCGAATCCGAAA+GGG + tig0023178:332-351 None:intergenic 40.0%
TTTCCAAAGTCGAATCCGAA+AGG + tig0023178:333-352 None:intergenic 40.0%
TGACTTCTTTGATCCCTGTT+GGG - tig0023178:364-383 Msa1405990:intron 40.0%
!! AACCATTTTTGCTCCCAACA+GGG + tig0023178:380-399 None:intergenic 40.0%
AGCAAAAATGGTTCTTTGCC+AGG - tig0023178:387-406 Msa1405990:intron 40.0%
TCTTTGCCAGGTTTGTCATT+TGG - tig0023178:399-418 Msa1405990:intron 40.0%
TAAGCAAAGTCTGTGCAATG+CGG + tig0023178:491-510 None:intergenic 40.0%
CATTGCACAGACTTTGCTTA+GGG - tig0023178:491-510 Msa1405990:intron 40.0%
ACTTGATTCTGCTCAGGAAT+TGG - tig0023178:545-564 Msa1405990:intron 40.0%
AGCTAGAGAGCAATACAAGA+AGG + tig0023178:869-888 None:intergenic 40.0%
GATAGGCTTCCATTACACAA+AGG + tig0023178:983-1002 None:intergenic 40.0%
AAAACATGACACTGGACTGT+TGG - tig0023178:1239-1258 Msa1405990:CDS 40.0%
GACTCCATAGCAAAAGCAAT+AGG - tig0023178:1385-1404 Msa1405990:intron 40.0%
AATAGGCAATGCAACCAAAG+TGG - tig0023178:1402-1421 Msa1405990:intron 40.0%
AGATGCCTTGCAAGTAATTC+AGG - tig0023178:1477-1496 Msa1405990:intron 40.0%
GATGCCATCAAGTACATTGT+AGG + tig0023178:1572-1591 None:intergenic 40.0%
TCAAGAGTTCTTGCAGAAAG+TGG - tig0023178:1639-1658 Msa1405990:intron 40.0%
GTCTAGTAAGTCGATTAGCA+TGG - tig0023178:2004-2023 Msa1405990:intron 40.0%
AACTCTGCACCTAAGTTGTT+TGG + tig0023178:2107-2126 None:intergenic 40.0%
AGTACACTTGCACAACCTAT+TGG + tig0023178:2347-2366 None:intergenic 40.0%
ATAGGTTGTGCAAGTGTACT+CGG - tig0023178:2347-2366 Msa1405990:CDS 40.0%
!! GGTTTTTCTTCTAGTTGAGG+AGG - tig0023178:2474-2493 Msa1405990:exon 40.0%
GGAGGGTCATTTCCATCATT+TGG - tig0023178:243-262 Msa1405990:CDS 45.0%
AACCCTTTCGGATTCGACTT+TGG - tig0023178:327-346 Msa1405990:intron 45.0%
GGGATCAAAGAAGTCACATC+AGG + tig0023178:360-379 None:intergenic 45.0%
GTGACTTCTTTGATCCCTGT+TGG - tig0023178:363-382 Msa1405990:intron 45.0%
ATCCCTGTTGGGAGCAAAAA+TGG - tig0023178:375-394 Msa1405990:intron 45.0%
!! GAACCATTTTTGCTCCCAAC+AGG + tig0023178:381-400 None:intergenic 45.0%
GGACTTCCAAATGACAAACC+TGG + tig0023178:408-427 None:intergenic 45.0%
! TGTCATTTGGAAGTCCTGCA+AGG - tig0023178:412-431 Msa1405990:intron 45.0%
AAGGAAGAAGGATCCTTCGA+CGG - tig0023178:431-450 Msa1405990:intron 45.0%
!! GTATTTGTTGCTGGTGCTAC+TGG - tig0023178:453-472 Msa1405990:intron 45.0%
GCATTGCACAGACTTTGCTT+AGG - tig0023178:490-509 Msa1405990:intron 45.0%
CACAGACTTTGCTTAGGGAA+GGG - tig0023178:496-515 Msa1405990:intron 45.0%
GAAGGGTTTAGTGTTAGAGC+TGG - tig0023178:513-532 Msa1405990:intron 45.0%
TCCTGAACTTGATTCTGCTC+AGG - tig0023178:539-558 Msa1405990:intron 45.0%
TCCTGAGCAGAATCAAGTTC+AGG + tig0023178:543-562 None:intergenic 45.0%
CTAGTATCAATGGCGTGTGT+CGG - tig0023178:673-692 Msa1405990:intron 45.0%
TAGTATCAATGGCGTGTGTC+GGG - tig0023178:674-693 Msa1405990:intron 45.0%
ACCAAAGTGGTTGTCACCAT+TGG - tig0023178:1415-1434 Msa1405990:intron 45.0%
ACCAATGGTGACAACCACTT+TGG + tig0023178:1419-1438 None:intergenic 45.0%
! ACCATTGGTCTCACAGAGAA+CGG - tig0023178:1430-1449 Msa1405990:intron 45.0%
AGCAGCCTGAATTACTTGCA+AGG + tig0023178:1485-1504 None:intergenic 45.0%
! TTTGACCGATGATTTTGCGC+CGG - tig0023178:1699-1718 Msa1405990:intron 45.0%
GCCGGAGAGTTCTTATAATG+TGG - tig0023178:1717-1736 Msa1405990:intron 45.0%
GTCTTAGGCGAAGAAAACAC+CGG - tig0023178:1742-1761 Msa1405990:intron 45.0%
AAAGTCCAGGATAGCATCGT+TGG - tig0023178:1896-1915 Msa1405990:intron 45.0%
TGATGTCTTCTCCAACACAC+AGG - tig0023178:1923-1942 Msa1405990:intron 45.0%
! GTTTTCTGCAACCTGTGTGT+TGG + tig0023178:1937-1956 None:intergenic 45.0%
CACACAGGTTGCAGAAAACA+AGG - tig0023178:1938-1957 Msa1405990:intron 45.0%
TTCAACTGCACCTTGGTCAT+TGG - tig0023178:2048-2067 Msa1405990:CDS 45.0%
AAGTTCGTCTACACGCTTCA+GGG + tig0023178:2385-2404 None:intergenic 45.0%
AAAGTTCGTCTACACGCTTC+AGG + tig0023178:2386-2405 None:intergenic 45.0%
! AGCGTGTAGACGAACTTTTC+AGG - tig0023178:2388-2407 Msa1405990:CDS 45.0%
TACAGCACTATTCCGGAAGA+TGG - tig0023178:2523-2542 Msa1405990:five_prime_UTR 45.0%
CTATTCCGGAAGATGGAAGA+AGG - tig0023178:2530-2549 Msa1405990:five_prime_UTR 45.0%
GCTTTCCTTCTTCCATCTTC+CGG + tig0023178:2538-2557 None:intergenic 45.0%
ATTGGAGAAAGCCAAAGCAG+AGG - tig0023178:2570-2589 Msa1405990:five_prime_UTR 45.0%
!!! AACTTTTTTATAAAATATAT+AGG + tig0023178:2227-2246 None:intergenic 5.0%
GAAAGAGTGGGAACCATGGA+TGG + tig0023178:147-166 None:intergenic 50.0%
GGATGAAAGAGTGGGAACCA+TGG + tig0023178:151-170 None:intergenic 50.0%
TGGAAGTCCTGCAAGGAAGA+AGG - tig0023178:419-438 Msa1405990:intron 50.0%
GAAGGATCCTTCTTCCTTGC+AGG + tig0023178:429-448 None:intergenic 50.0%
CCAGCAACAAATACCGTCGA+AGG + tig0023178:447-466 None:intergenic 50.0%
! CCTTCGACGGTATTTGTTGC+TGG - tig0023178:444-463 Msa1405990:intron 50.0%
GCACAGACTTTGCTTAGGGA+AGG - tig0023178:495-514 Msa1405990:intron 50.0%
TAGGAAGTTAGCTAGGGGGA+AGG - tig0023178:1087-1106 Msa1405990:CDS 50.0%
AGGAAGTTAGCTAGGGGGAA+GGG - tig0023178:1088-1107 Msa1405990:CDS 50.0%
ACCGTTCTCTGTGAGACCAA+TGG + tig0023178:1434-1453 None:intergenic 50.0%
! TACTTGCAAGGCATCTGACG+TGG + tig0023178:1473-1492 None:intergenic 50.0%
CATCGTAGATGACTGCAACG+TGG + tig0023178:1525-1544 None:intergenic 50.0%
ACTCTCCGGCGCAAAATCAT+CGG + tig0023178:1707-1726 None:intergenic 50.0%
CCAAGGTGCAGTTGAAGAGA+TGG + tig0023178:2044-2063 None:intergenic 50.0%
CCATCTCTTCAACTGCACCT+TGG - tig0023178:2041-2060 Msa1405990:intron 50.0%
AGTTCGTCTACACGCTTCAG+GGG + tig0023178:2384-2403 None:intergenic 50.0%
GAAAGCCAAAGCAGAGGAAG+AGG - tig0023178:2576-2595 Msa1405990:five_prime_UTR 50.0%
TCTTGCCTCTTCCTCTGCTT+TGG + tig0023178:2584-2603 None:intergenic 50.0%
GGCAAGAGTGGAAGCTGAAA+AGG - tig0023178:2597-2616 Msa1405990:five_prime_UTR 50.0%
AGAGAACGGTCCAGCAACTG+AGG - tig0023178:1444-1463 Msa1405990:intron 55.0%
ATTCAGGCTGCTCAGCTAGC+AGG - tig0023178:1493-1512 Msa1405990:intron 55.0%
GTCCAGGATAGCATCGTTGG+TGG - tig0023178:1899-1918 Msa1405990:intron 55.0%
AGCCACCAACGATGCTATCC+TGG + tig0023178:1904-1923 None:intergenic 55.0%
!! CACGCTTCAGGGGAGCATTT+GGG + tig0023178:2374-2393 None:intergenic 55.0%
!! ACACGCTTCAGGGGAGCATT+TGG + tig0023178:2375-2394 None:intergenic 55.0%
AGCAGAGGAAGAGGCAAGAG+TGG - tig0023178:2585-2604 Msa1405990:five_prime_UTR 55.0%
!! GCTGGTGCTACTGGTCAAGC+TGG - tig0023178:462-481 Msa1405990:intron 60.0%
GACGTGGAGACCTCAGTTGC+TGG + tig0023178:1457-1476 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0023178 gene 1 2636 1 ID=Msa1405990;Name=Msa1405990
tig0023178 mRNA 1 2636 1 ID=Msa1405990-mRNA-1;Parent=Msa1405990;Name=Msa1405990-mRNA-1;_AED=0.01;_eAED=0.01;_QI=149|1|1|1|1|1|5|0|378
tig0023178 exon 1 109 1 ID=Msa1405990-mRNA-1:exon:24369;Parent=Msa1405990-mRNA-1
tig0023178 exon 228 286 228 ID=Msa1405990-mRNA-1:exon:24368;Parent=Msa1405990-mRNA-1
tig0023178 exon 678 746 678 ID=Msa1405990-mRNA-1:exon:24367;Parent=Msa1405990-mRNA-1
tig0023178 exon 857 1312 857 ID=Msa1405990-mRNA-1:exon:24366;Parent=Msa1405990-mRNA-1
tig0023178 exon 2047 2636 2047 ID=Msa1405990-mRNA-1:exon:24365;Parent=Msa1405990-mRNA-1
tig0023178 five_prime_UTR 2488 2636 2488 ID=Msa1405990-mRNA-1:five_prime_utr;Parent=Msa1405990-mRNA-1
tig0023178 CDS 2047 2487 2047 ID=Msa1405990-mRNA-1:cds;Parent=Msa1405990-mRNA-1
tig0023178 CDS 857 1312 857 ID=Msa1405990-mRNA-1:cds;Parent=Msa1405990-mRNA-1
tig0023178 CDS 678 746 678 ID=Msa1405990-mRNA-1:cds;Parent=Msa1405990-mRNA-1
tig0023178 CDS 228 286 228 ID=Msa1405990-mRNA-1:cds;Parent=Msa1405990-mRNA-1
tig0023178 CDS 1 109 1 ID=Msa1405990-mRNA-1:cds;Parent=Msa1405990-mRNA-1
Gene Sequence

>Msa1405990

ATGGTTCCCACTCTTTCATCCAATTCTTTATCTCATCCTAAGTTGAATTTTAGGAACCAAACAAGGTTCAATGTCTATGCTAAAAAATCTGGAGGAGGGTCATTTCCATCATTTGGATTAGGAAAACCAAAAGATGAAGAAAAAGACCAAACAAATGGTTCATCAAACTCTAATAATAACCCTTTCGGATTCGACTTTGGAAAATTACCTGATGTGACTTCTTTGATCCCTGTTGGGAGCAAAAATGGTTCTTTGCCAGGTTTGTCATTTGGAAGTCCTGCAAGGAAGAAGGATCCTTCGACGGTATTTGTTGCTGGTGCTACTGGTCAAGCTGGTATCCGCATTGCACAGACTTTGCTTAGGGAAGGGTTTAGTGTTAGAGCTGGTGTTCCTGAACTTGATTCTGCTCAGGAATTGGCTCGTCTTGCTTCTCAATATAAGATTATATCAAACGAAGAGGCAAAGCGTCTCAATGCTGTGCAGTCAAGCTTTGATGATGCAGACTCCATAGCAAAAGCAATAGGCAATGCAACCAAAGTGGTTGTCACCATTGGTCTCACAGAGAACGGTCCAGCAACTGAGGTCTCCACGTCAGATGCCTTGCAAGTAATTCAGGCTGCTCAGCTAGCAGGCGTAGACCACGTTGCAGTCATCTACGATGAAAACAACGGCGTCAGCACCTCAACCTACAATGTACTTGATGGCATCTCCTCTTTCTTCAACAATATCTTCTCCAAGTCTCAACCTTTGTCTATTCAAGAGTTCTTGCAGAAAGTGGTTGAAACAGATGTCAAATATACCTTAATCAAAACATGTTTGACCGATGATTTTGCGCCGGAGAGTTCTTATAATGTGGTTGTCTTAGGCGAAGAAAACACCGGTTCGAACGACTATAAAGTAACAAAGTCCAGGATAGCATCGTTGGTGGCTGATGTCTTCTCCAACACACAGGTTGCAGAAAACAAGGTTGTGCAAGTGTACTCGGACCCAAATGCTCCCCTGAAGCGTGTAGACGAACTTTTCAGCACTATTCCGGAAGATGGAAGAAGGAAAGCCTATGCTGAAATATTGGAGAAAGCCAAAGCAGAGGAAGAGGCAAGAGTGGAAGCTGAAAAGGCACGCGAAGCTGCTGCA

Protein sequence

>Msa1405990

MVPTLSSNSLSHPKLNFRNQTRFNVYAKKSGGGSFPSFGLGKPKDEEKDQTNGSSNSNNNPFGFDFGKLPDVTSLIPVGSKNGSLPGLSFGSPARKKDPSTVFVAGATGQAGIRIAQTLLREGFSVRAGVPELDSAQELARLASQYKIISNEEAKRLNAVQSSFDDADSIAKAIGNATKVVVTIGLTENGPATEVSTSDALQVIQAAQLAGVDHVAVIYDENNGVSTSTYNVLDGISSFFNNIFSKSQPLSIQEFLQKVVETDVKYTLIKTCLTDDFAPESSYNVVVLGEENTGSNDYKVTKSRIASLVADVFSNTQVAENKVVQVYSDPNAPLKRVDELFSTIPEDGRRKAYAEILEKAKAEEEARVEAEKAREAAA