AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0387630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0387630 MtrunA17_Chr3g0144151 99.113 451 4 0 1 451 1 451 0.0 915
Msa0387630 MtrunA17_Chr7g0252641 74.742 388 90 5 38 422 21 403 0.0 528
Msa0387630 MtrunA17_Chr2g0310421 45.346 419 212 10 1 414 1 407 3.07e-108 326
Msa0387630 MtrunA17_Chr4g0057861 48.680 341 166 7 84 421 4 338 8.14e-101 305
Msa0387630 MtrunA17_Chr6g0458861 47.214 341 171 7 83 420 1 335 4.32e-100 303
Msa0387630 MtrunA17_Chr3g0122971 47.432 331 148 8 85 414 6 311 6.83e-95 288
Msa0387630 MtrunA17_Chr8g0357071 44.314 255 123 8 166 407 59 307 7.40e-57 190
Msa0387630 MtrunA17_Chr8g0360951 44.898 147 70 3 262 407 1 137 1.05e-29 112
Msa0387630 MtrunA17_Chr7g0235831 77.941 68 8 1 167 234 28 88 4.49e-28 106
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0387630 AT1G42970.1 84.989 453 60 3 1 451 1 447 0.0 768
Msa0387630 AT1G12900.5 75.325 385 92 3 38 422 59 440 0.0 543
Msa0387630 AT1G12900.1 75.325 385 92 3 38 422 17 398 0.0 542
Msa0387630 AT3G26650.1 75.969 387 85 6 39 422 14 395 0.0 534
Msa0387630 AT1G12900.3 81.395 344 61 3 79 422 9 349 0.0 523
Msa0387630 AT1G12900.4 81.395 344 61 3 79 422 9 349 0.0 523
Msa0387630 AT1G12900.2 85.600 250 33 3 173 422 70 316 8.06e-134 388
Msa0387630 AT1G79530.1 51.603 343 158 6 79 419 80 416 1.43e-111 335
Msa0387630 AT1G16300.1 44.988 409 202 9 28 419 12 414 3.48e-108 327
Msa0387630 AT3G04120.1 48.348 333 163 7 85 414 5 331 1.24e-100 304
Msa0387630 AT1G13440.1 47.447 333 166 7 85 414 5 331 5.83e-100 303
Msa0387630 AT1G13440.2 42.943 333 153 7 85 414 5 303 1.39e-81 254

Find 160 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATTTACAATGAAAATTA+TGG 0.211608 3_1:+91713224 None:intergenic
CAGTCAAAGAGTGGTGGATT+TGG 0.255900 3_1:-91710073 Msa0387630:CDS
TGTATTTGTGCAGAGGCTTC+TGG 0.306310 3_1:-91710922 Msa0387630:intron
TGGATGTGCTTTCCGGCTCC+AGG 0.316464 3_1:+91711677 None:intergenic
AGAAGACTCTCTAGCATTAC+TGG 0.316626 3_1:+91712907 None:intergenic
GATTGAGAGAAAGAAAATTA+TGG 0.320609 3_1:+91713295 None:intergenic
AGAGACTGTTGCCAAGTTAA+AGG 0.332305 3_1:-91712287 Msa0387630:CDS
TTGAAATATGATTCTATGCT+TGG 0.332977 3_1:-91712012 Msa0387630:CDS
ACCTGCTTGGATGTGCTTTC+CGG 0.335594 3_1:+91711670 None:intergenic
AATGAGACTATTACAGTTGA+TGG 0.342734 3_1:-91711958 Msa0387630:CDS
TACCAAGTTAAATTTGTCTA+TGG 0.345528 3_1:-91709789 Msa0387630:three_prime_UTR
AGCTGTGATGATAACTTTCT+TGG 0.347115 3_1:+91711646 None:intergenic
CTCCCTGCTTGAGCGGTGCC+TGG 0.347369 3_1:+91710027 None:intergenic
GGGATCCTCTTAAGCTTCCT+TGG 0.348148 3_1:-91711909 Msa0387630:CDS
ATGACAATGAATGGGGTTAC+AGG 0.348712 3_1:-91710524 Msa0387630:intron
GGAATATCAGCGCCCTTTGC+AGG 0.358017 3_1:+91711623 None:intergenic
AGCCTTGGCTGCTCCTGTGC+TGG 0.378441 3_1:+91710842 None:intergenic
TATATTTCCAGGAATTGTTA+AGG 0.381383 3_1:-91711239 Msa0387630:intron
AGAAAGAAAATTATGGTTGC+TGG 0.384862 3_1:+91713302 None:intergenic
TATTGACTCTTCCTTGACTA+TGG 0.388165 3_1:-91710583 Msa0387630:CDS
TTCGACCGTGCCAGCATCTC+AGG 0.393236 3_1:+91712227 None:intergenic
AATGTTCAGTGCTGCAGCCC+TGG 0.393594 3_1:+91710872 None:intergenic
CTACAAGATAAGATAATGTT+TGG 0.397031 3_1:+91713365 None:intergenic
TGCTCCCTTTGTGAAGATCC+TGG 0.407466 3_1:-91711368 Msa0387630:CDS
GATATTCCAACTTACGTTGT+TGG 0.408355 3_1:-91711608 Msa0387630:CDS
GATGGAAATCTTGTGCTTGT+AGG 0.410234 3_1:+91713119 None:intergenic
GCAAATTATAATCAGGCCAT+TGG 0.410743 3_1:-91712328 Msa0387630:intron
CTATGGTCAATAATGAGTTT+TGG 0.416744 3_1:-91709772 Msa0387630:three_prime_UTR
TATGGTCATGGGAGATGATA+TGG 0.417158 3_1:-91710565 Msa0387630:CDS
ATATTTCCAGGAATTGTTAA+GGG 0.418720 3_1:-91711238 Msa0387630:intron
CCTTTGAGGCACATTGAGTT+GGG 0.421860 3_1:+91713078 None:intergenic
CTCTTCCTTGACTATGGTCA+TGG 0.425322 3_1:-91710577 Msa0387630:CDS
GGATCCTCTTAAGCTTCCTT+GGG 0.426766 3_1:-91711908 Msa0387630:CDS
TTATGATGTCGGCTACTTCA+TGG 0.429613 3_1:+91711564 None:intergenic
TCAGGGAACTGGAGTGTTTG+TGG 0.437834 3_1:-91711705 Msa0387630:intron
CTTGGCTGCTCCTGTGCTGG+TGG 0.441233 3_1:+91710845 None:intergenic
AATGCAAAGTTTATGAATAG+AGG 0.442277 3_1:-91709957 Msa0387630:exon
AGGTCAACAACTGAAACATT+AGG 0.444204 3_1:+91710756 None:intergenic
AAGCTTCCTTGGGCTGAGCT+TGG 0.444289 3_1:-91711898 Msa0387630:CDS
CCATCCTTGTTGTCTCTAGC+AGG 0.444814 3_1:-91711930 Msa0387630:CDS
ATGAAGTAGCCGACATCATA+AGG 0.446117 3_1:-91711562 Msa0387630:intron
TCAGCCCAAGGAAGCTTAAG+AGG 0.447395 3_1:+91711904 None:intergenic
TTTACTCCAACAACGTAAGT+TGG 0.460656 3_1:+91711602 None:intergenic
AAGATCCTGGATGAAGAATT+CGG 0.462539 3_1:-91711355 Msa0387630:intron
TTGGCTGCTCCTGTGCTGGT+GGG 0.463193 3_1:+91710846 None:intergenic
TGGCCAGGCACCGCTCAAGC+AGG 0.465268 3_1:-91710030 Msa0387630:CDS
AAAGAGTGAGAGGCCTTTGA+TGG 0.466577 3_1:+91713101 None:intergenic
ATCAATGGTTTCGGACGCAT+TGG 0.469023 3_1:-91712259 Msa0387630:CDS
AAGGTAGCAATCAATGGTTT+CGG 0.472649 3_1:-91712268 Msa0387630:CDS
ACCTTTGAGGCACATTGAGT+TGG 0.481118 3_1:+91713077 None:intergenic
AAGTTAAAGGTAGCAATCAA+TGG 0.481757 3_1:-91712274 Msa0387630:CDS
CACCAGCACAGGAGCAGCCA+AGG 0.482178 3_1:-91710844 Msa0387630:CDS
CCCAACTCAATGTGCCTCAA+AGG 0.482556 3_1:-91713078 Msa0387630:intron
TCTAGTGCTGCCACAGCTCA+AGG 0.485246 3_1:-91710814 Msa0387630:CDS
ATGGAAATCTTGTGCTTGTA+GGG 0.485305 3_1:+91713120 None:intergenic
TTGCTTGGTATGACAATGAA+TGG 0.485506 3_1:-91710533 Msa0387630:CDS
CATTGGATCAACTGCTGTGA+GGG 0.487373 3_1:-91712311 Msa0387630:CDS
AGCAGGGAGTGGAGATCCAT+TGG 0.488395 3_1:-91710013 Msa0387630:CDS
ATTGATTGCTACCTTTAACT+TGG 0.488459 3_1:+91712276 None:intergenic
GAAAGAAAATTATGGTTGCT+GGG 0.488781 3_1:+91713303 None:intergenic
TAACTTTCTTGGCACCTGCT+TGG 0.490883 3_1:+91711657 None:intergenic
GAAGAAATTTCCTGAGATGC+TGG 0.490952 3_1:-91712237 Msa0387630:CDS
CAGAGAGAGTGAAACCTTTG+AGG 0.495920 3_1:+91713064 None:intergenic
AAAGGGAGCAAGACAGTTTG+TGG 0.498610 3_1:+91711381 None:intergenic
CACATCTAGTAGCAAACAAA+TGG 0.498642 3_1:-91710050 Msa0387630:CDS
TGGAATTGACATTGTCATTG+AGG 0.500940 3_1:-91711878 Msa0387630:intron
TGCTTGGTATGACAATGAAT+GGG 0.502219 3_1:-91710532 Msa0387630:CDS
GGCACCGCTCAAGCAGGGAG+TGG 0.504031 3_1:-91710024 Msa0387630:CDS
GACCATAGACAAATTTAACT+TGG 0.506329 3_1:+91709787 None:intergenic
TGGCTGCTCCTGTGCTGGTG+GGG 0.506396 3_1:+91710847 None:intergenic
GCTTACCGAATTCTTCATCC+AGG 0.508541 3_1:+91711350 None:intergenic
GGGACCATTGAAAGGTGTAT+TGG 0.515641 3_1:-91710664 Msa0387630:CDS
TCATCCAGGATCTTCACAAA+GGG 0.515849 3_1:+91711364 None:intergenic
GGAGTGTTTGTGGATGGCCC+TGG 0.517318 3_1:-91711695 Msa0387630:CDS
GAGATGCTGGCACGGTCGAA+AGG 0.519276 3_1:-91712224 Msa0387630:CDS
ATCATCACAGCTCCTGCAAA+GGG 0.520327 3_1:-91711635 Msa0387630:CDS
AACATTGTCCCCACCAGCAC+AGG 0.520340 3_1:-91710855 Msa0387630:CDS
GCCGGAAAGCACATCCAAGC+AGG 0.525097 3_1:-91711671 Msa0387630:CDS
GGATGTGCTTTCCGGCTCCA+GGG 0.530672 3_1:+91711678 None:intergenic
TTTGTGGATGGCCCTGGAGC+CGG 0.533936 3_1:-91711689 Msa0387630:CDS
TGTGGTGAATGTTGCGAAGA+AGG 0.537700 3_1:-91710733 Msa0387630:CDS
AGTCCAATGATCAGAATACA+TGG 0.538809 3_1:-91713392 None:intergenic
GTCTCCTGTGTAGGAATGTG+TGG 0.543087 3_1:+91711204 None:intergenic
TTGTAGAAGCTAAAGCTGCA+TGG 0.544120 3_1:+91713147 None:intergenic
ACAGGGACTTGAGAAGAGCC+AGG 0.544310 3_1:-91710890 Msa0387630:CDS
ATAAACTTTGCATTCCTCAT+CGG 0.548279 3_1:+91709966 None:intergenic
CCTCACAGCAGTTGATCCAA+TGG 0.549314 3_1:+91712312 None:intergenic
CTCTCTAGCATTACTGGCAT+AGG 0.549910 3_1:+91712913 None:intergenic
CTTGGTTGCATCTATAGCTA+TGG 0.550615 3_1:-91713174 Msa0387630:exon
GGCCAGGCACCGCTCAAGCA+GGG 0.554341 3_1:-91710029 Msa0387630:CDS
TGTAGAAGCTAAAGCTGCAT+GGG 0.556274 3_1:+91713148 None:intergenic
CTTTGCATTCCTCATCGGAC+GGG 0.556540 3_1:+91709971 None:intergenic
TAACAAAATTAGTAATTCAA+AGG 0.558617 3_1:-91709585 None:intergenic
TGTTTCAGTTGTTGACCTTG+TGG 0.563274 3_1:-91710751 Msa0387630:CDS
TTTGCTTGTGCAGAGACTTG+AGG 0.564688 3_1:-91712975 Msa0387630:intron
AAAGCCTTACCTTATGATGT+CGG 0.566701 3_1:+91711553 None:intergenic
TATCATCACAGCTCCTGCAA+AGG 0.567484 3_1:-91711636 Msa0387630:CDS
AACAAATGGCTTGCTTGTAG+AGG 0.570902 3_1:+91709908 None:intergenic
ATATGGTCAAGGTGGTTGCT+TGG 0.572598 3_1:-91710548 Msa0387630:CDS
GTAGGAATGTGTGGTTGTCA+TGG 0.573317 3_1:+91711213 None:intergenic
ACATCCAATACACCTTTCAA+TGG 0.575028 3_1:+91710660 None:intergenic
GTCTCACAGAAGTCCTCCAA+TGG 0.575066 3_1:+91709997 None:intergenic
CCTGCTAGAGACAACAAGGA+TGG 0.575224 3_1:+91711930 None:intergenic
CATCCTTGTTGTCTCTAGCA+GGG 0.575538 3_1:-91711929 Msa0387630:CDS
TTGAGCTTTCCCTTGAGCTG+TGG 0.576142 3_1:+91710804 None:intergenic
GCTTGTGCAGAGACTTGAGG+TGG 0.577189 3_1:-91712972 Msa0387630:intron
GGAGTAAATGAGCAAGACTA+CGG 0.579497 3_1:-91711587 Msa0387630:CDS
GGCTTCTGGATGCTTCACAC+AGG 0.580102 3_1:-91710908 Msa0387630:CDS
ATATACCTGGTCTCCTGTGT+AGG 0.580151 3_1:+91711195 None:intergenic
CTAGTAGCAAACAAATGGCC+AGG 0.581197 3_1:-91710045 Msa0387630:CDS
AGCATTCAGAAAGGCAGCTG+AGG 0.582409 3_1:-91710685 Msa0387630:CDS
TGATTTCAGTCAAAGAGTGG+TGG 0.586479 3_1:-91710079 Msa0387630:intron
CTTGAGGTGGCTGAATTCAG+TGG 0.586722 3_1:-91712959 Msa0387630:CDS
ATCTCCACTCCCTGCTTGAG+CGG 0.587556 3_1:+91710020 None:intergenic
ACATTCCTACACAGGAGACC+AGG 0.591972 3_1:-91711200 Msa0387630:intron
CTGCTAGAGACAACAAGGAT+GGG 0.592139 3_1:+91711931 None:intergenic
AAAGAAAATTATGGTTGCTG+GGG 0.594470 3_1:+91713304 None:intergenic
AGGGAGTGGAGATCCATTGG+AGG 0.594539 3_1:-91710010 Msa0387630:CDS
TTGACAACAATTACTTCGAG+TGG 0.594963 3_1:+91712196 None:intergenic
TTCATCCAGGATCTTCACAA+AGG 0.595211 3_1:+91711363 None:intergenic
GCAGCTGAGGGACCATTGAA+AGG 0.596252 3_1:-91710672 Msa0387630:CDS
GTCAATAGTTGAAGAAACAT+CGG 0.596396 3_1:+91710599 None:intergenic
GGAACTGGAGTGTTTGTGGA+TGG 0.597007 3_1:-91711701 Msa0387630:CDS
ACTTTGCATTCCTCATCGGA+CGG 0.598687 3_1:+91709970 None:intergenic
GCATTCAGAAAGGCAGCTGA+GGG 0.599413 3_1:-91710684 Msa0387630:CDS
TGTCAATGCAGCATTCAGAA+AGG 0.602285 3_1:-91710694 Msa0387630:CDS
AATTTCCTGAGATGCTGGCA+CGG 0.602992 3_1:-91712232 Msa0387630:CDS
TCTTCCTTGACTATGGTCAT+GGG 0.605006 3_1:-91710576 Msa0387630:CDS
CTAGTGCTGCCACAGCTCAA+GGG 0.606922 3_1:-91710813 Msa0387630:CDS
GTGGTGAATGTTGCGAAGAA+GGG 0.613677 3_1:-91710732 Msa0387630:CDS
CAGCTCAAGGGAAAGCTCAA+CGG 0.614061 3_1:-91710801 Msa0387630:CDS
ATCTCCCATGACCATAGTCA+AGG 0.618363 3_1:+91710572 None:intergenic
ACAACTGAAACATTAGGTGT+TGG 0.619133 3_1:+91710762 None:intergenic
TTGAAGAAACATCGGTGCAG+CGG 0.621950 3_1:+91710607 None:intergenic
CAGCACTAGAGAGACAGCCT+TGG 0.622925 3_1:+91710827 None:intergenic
CGGAAGTCAACAGACACAAG+TGG 0.626646 3_1:+91710627 None:intergenic
TCAATTCCAAGCTCAGCCCA+AGG 0.629195 3_1:+91711892 None:intergenic
ATTAGGTGTTGGCACACGAA+GGG 0.632209 3_1:+91710773 None:intergenic
AAGCACAAGATTTCCATCAA+AGG 0.632662 3_1:-91713114 Msa0387630:CDS
AATTATGGTTGATGAATGAG+TGG 0.632974 3_1:+91713239 None:intergenic
TTGAGTTGGGAAAGAGTGAG+AGG 0.635785 3_1:+91713091 None:intergenic
AGCTGCTCAACTCGCAACCA+AGG 0.637355 3_1:-91712870 Msa0387630:intron
CATGGGAGATGATATGGTCA+AGG 0.639283 3_1:-91710559 Msa0387630:CDS
GCTTCTGGATGCTTCACACA+GGG 0.640300 3_1:-91710907 Msa0387630:CDS
CATTAGGTGTTGGCACACGA+AGG 0.643390 3_1:+91710772 None:intergenic
AGAAGCTAAAGCTGCATGGG+TGG 0.646501 3_1:+91713151 None:intergenic
ACAACCACACATTCCTACAC+AGG 0.647760 3_1:-91711208 Msa0387630:CDS
ATTGGATCAACTGCTGTGAG+GGG 0.655692 3_1:-91712310 Msa0387630:CDS
TGAGACAAACCCGTCCGATG+AGG 0.658525 3_1:-91709980 Msa0387630:CDS
CAGGGACTTGAGAAGAGCCA+GGG 0.658771 3_1:-91710889 Msa0387630:CDS
AAGAAAATTATGGTTGCTGG+GGG 0.660776 3_1:+91713305 None:intergenic
GATCCCTGCTAGAGACAACA+AGG 0.660973 3_1:+91711926 None:intergenic
CCATTGGATCAACTGCTGTG+AGG 0.662223 3_1:-91712312 Msa0387630:CDS
TCTTCGCAACATTCACCACA+AGG 0.675251 3_1:+91710736 None:intergenic
TCGTATATCAGATATCAGAA+CGG 0.698894 3_1:+91709623 None:intergenic
TGGTGATTTCAGTCAAAGAG+TGG 0.700344 3_1:-91710082 Msa0387630:intron
GCTTGGTATGACAATGAATG+GGG 0.708873 3_1:-91710531 Msa0387630:CDS
GTAATTGTTGTCAATGACAG+TGG 0.725098 3_1:-91712187 Msa0387630:CDS
GGGAGATGATATGGTCAAGG+TGG 0.737175 3_1:-91710556 Msa0387630:CDS
ATTGTTGTCAATGACAGTGG+TGG 0.737380 3_1:-91712184 Msa0387630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTTACAATGAAAATTA+TGG + chr3_1:91709746-91709765 None:intergenic 10.0%
!! ATTACTTTAATGATCTTTAA+GGG + chr3_1:91710553-91710572 None:intergenic 15.0%
!! TATTACTTTAATGATCTTTA+AGG + chr3_1:91710554-91710573 None:intergenic 15.0%
!!! AAATAAATTCAATTTGCTTA+TGG - chr3_1:91710613-91710632 Msa0387630:CDS 15.0%
!! AATAATCTAAAAAGAACTTA+TGG - chr3_1:91712682-91712701 Msa0387630:intron 15.0%
!! TAACAAAAGAAAAAAACAAA+TGG + chr3_1:91713076-91713095 None:intergenic 15.0%
!!! ACATGTTTTATATATCTCAT+TGG - chr3_1:91710133-91710152 Msa0387630:intron 20.0%
!! TTTATGCTACATATAAAAGA+AGG + chr3_1:91710176-91710195 None:intergenic 20.0%
!!! AAGTTAATGAATTTTTGTTC+AGG - chr3_1:91711244-91711263 Msa0387630:intron 20.0%
!!! AGTTAATGAATTTTTGTTCA+GGG - chr3_1:91711245-91711264 Msa0387630:intron 20.0%
!! AAGCTATTGGAAATAAATAA+TGG + chr3_1:91711852-91711871 None:intergenic 20.0%
!!! TACAATTTTTAGACTTTGTT+TGG + chr3_1:91712029-91712048 None:intergenic 20.0%
!! ATGATACTTATATCCAAATA+TGG + chr3_1:91713301-91713320 None:intergenic 20.0%
! CTACAAGATAAGATAATGTT+TGG + chr3_1:91709605-91709624 None:intergenic 25.0%
! GATTGAGAGAAAGAAAATTA+TGG + chr3_1:91709675-91709694 None:intergenic 25.0%
! ATGTAACTAGAAAATAACCT+TGG + chr3_1:91710117-91710136 None:intergenic 25.0%
!! AACAACATTTTCTGAATGAA+GGG + chr3_1:91710453-91710472 None:intergenic 25.0%
!!! TTTAAGAGAATGGCTTTAAA+AGG + chr3_1:91710529-91710548 None:intergenic 25.0%
! TTGCAATTAAGTAACATCTT+TGG - chr3_1:91710574-91710593 Msa0387630:CDS 25.0%
!! ATGGTTTGCAAATTATAATC+AGG - chr3_1:91710632-91710651 Msa0387630:CDS 25.0%
! AACTAAGTCAACACAATTAA+AGG + chr3_1:91710842-91710861 None:intergenic 25.0%
!! ATTAGTTTCACTGAATTGAA+TGG - chr3_1:91710882-91710901 Msa0387630:CDS 25.0%
! TTGAAATATGATTCTATGCT+TGG - chr3_1:91710955-91710974 Msa0387630:intron 25.0%
! ATTCAAACATCATCAATTGT+AGG - chr3_1:91711115-91711134 Msa0387630:intron 25.0%
!! ATGCTTGTATTTTCATTTTG+TGG + chr3_1:91711141-91711160 None:intergenic 25.0%
! ATAGATCAAAGATGATTAAG+TGG + chr3_1:91711711-91711730 None:intergenic 25.0%
! TATATTTCCAGGAATTGTTA+AGG - chr3_1:91711728-91711747 Msa0387630:intron 25.0%
! ATATTTCCAGGAATTGTTAA+GGG - chr3_1:91711729-91711748 Msa0387630:intron 25.0%
!! ATGATGTTTGATAATATACC+TGG + chr3_1:91711788-91711807 None:intergenic 25.0%
! ATCAAACATCATATGTTTGT+TGG - chr3_1:91711796-91711815 Msa0387630:intron 25.0%
! ATGGATAAGAAGTTACAATA+AGG - chr3_1:91711895-91711914 Msa0387630:CDS 25.0%
! TAAAAATTGTATTTGTGCAG+AGG - chr3_1:91712038-91712057 Msa0387630:intron 25.0%
! TCTATTTGTATATACTGGAA+TGG + chr3_1:91712529-91712548 None:intergenic 25.0%
! GATGTTCTATTTGTATATAC+TGG + chr3_1:91712534-91712553 None:intergenic 25.0%
!! GTTATTGATAGTTACAATGT+TGG - chr3_1:91712865-91712884 Msa0387630:intron 25.0%
! AATGCAAAGTTTATGAATAG+AGG - chr3_1:91713010-91713029 Msa0387630:intron 25.0%
! TACCAAGTTAAATTTGTCTA+TGG - chr3_1:91713178-91713197 Msa0387630:five_prime_UTR 25.0%
! ATCATTATATAAGTGCTACA+TGG - chr3_1:91713244-91713263 Msa0387630:five_prime_UTR 25.0%
AAAGAAAATTATGGTTGCTG+GGG + chr3_1:91709666-91709685 None:intergenic 30.0%
GAAAGAAAATTATGGTTGCT+GGG + chr3_1:91709667-91709686 None:intergenic 30.0%
AGAAAGAAAATTATGGTTGC+TGG + chr3_1:91709668-91709687 None:intergenic 30.0%
!! AATTATGGTTGATGAATGAG+TGG + chr3_1:91709731-91709750 None:intergenic 30.0%
ATGAAACAAAGCAATCATGA+AGG + chr3_1:91709938-91709957 None:intergenic 30.0%
GCAAAGTAAAGTGAAGTATA+AGG + chr3_1:91709977-91709996 None:intergenic 30.0%
TGCTACATATAAAAGAAGGA+AGG + chr3_1:91710172-91710191 None:intergenic 30.0%
TGTTGACAATGGTAATAGTT+TGG - chr3_1:91710247-91710266 Msa0387630:intron 30.0%
TTGAATGTAATCACATGTGT+CGG - chr3_1:91710282-91710301 Msa0387630:intron 30.0%
! CAACAACATTTTCTGAATGA+AGG + chr3_1:91710454-91710473 None:intergenic 30.0%
CTTCATTCAGAAAATGTTGT+TGG - chr3_1:91710452-91710471 Msa0387630:intron 30.0%
! CTTTAAGGGATTTAAGAGAA+TGG + chr3_1:91710539-91710558 None:intergenic 30.0%
TAAGTAACATCTTTGGTTAC+TGG - chr3_1:91710581-91710600 Msa0387630:CDS 30.0%
ATTGATTGCTACCTTTAACT+TGG + chr3_1:91710694-91710713 None:intergenic 30.0%
AAGTTAAAGGTAGCAATCAA+TGG - chr3_1:91710693-91710712 Msa0387630:CDS 30.0%
AATGAGACTATTACAGTTGA+TGG - chr3_1:91711009-91711028 Msa0387630:intron 30.0%
TGAAAATACAAGCATGTGAT+TGG - chr3_1:91711146-91711165 Msa0387630:intron 30.0%
CATCTTTGATCTATATTTCC+AGG - chr3_1:91711717-91711736 Msa0387630:intron 30.0%
! ACTTCTTATCCATTTTCAGT+TGG + chr3_1:91711888-91711907 None:intergenic 30.0%
!!! TTGTTTGGCTTGATTTGTTT+TGG + chr3_1:91712014-91712033 None:intergenic 30.0%
GTCAATAGTTGAAGAAACAT+CGG + chr3_1:91712371-91712390 None:intergenic 30.0%
TGACACGAAACTTCATTATA+TGG + chr3_1:91712481-91712500 None:intergenic 30.0%
GTTTATCCTAAAAAGATGCA+TGG + chr3_1:91712556-91712575 None:intergenic 30.0%
ATAAACTTTGCATTCCTCAT+CGG + chr3_1:91713004-91713023 None:intergenic 30.0%
! AATGTGTTTTGTAATGTCTG+AGG - chr3_1:91713149-91713168 Msa0387630:CDS 30.0%
! ATGTGTTTTGTAATGTCTGA+GGG - chr3_1:91713150-91713169 Msa0387630:CDS 30.0%
GACCATAGACAAATTTAACT+TGG + chr3_1:91713183-91713202 None:intergenic 30.0%
! CTATGGTCAATAATGAGTTT+TGG - chr3_1:91713195-91713214 Msa0387630:five_prime_UTR 30.0%
TCTTTGATAGAACATTATGG+CGG + chr3_1:91713278-91713297 None:intergenic 30.0%
TGGTCTTTGATAGAACATTA+TGG + chr3_1:91713281-91713300 None:intergenic 30.0%
GTTCTATCAAAGACCATATT+TGG - chr3_1:91713285-91713304 Msa0387630:five_prime_UTR 30.0%
TCGTATATCAGATATCAGAA+CGG + chr3_1:91713347-91713366 None:intergenic 30.0%
AAGAAAATTATGGTTGCTGG+GGG + chr3_1:91709665-91709684 None:intergenic 35.0%
!!! CAAAGAGTTGTTTTTCAGCT+TGG - chr3_1:91709775-91709794 Msa0387630:three_prime_UTR 35.0%
ATGGAAATCTTGTGCTTGTA+GGG + chr3_1:91709850-91709869 None:intergenic 35.0%
AAGCACAAGATTTCCATCAA+AGG - chr3_1:91709853-91709872 Msa0387630:three_prime_UTR 35.0%
! TGTCAAACAATGACACGTTT+TGG - chr3_1:91710305-91710324 Msa0387630:intron 35.0%
ACACATGTAATCTGAATCGT+CGG - chr3_1:91710337-91710356 Msa0387630:intron 35.0%
GGTTGCATAACATATTTGCA+TGG - chr3_1:91710473-91710492 Msa0387630:intron 35.0%
GCAAATTATAATCAGGCCAT+TGG - chr3_1:91710639-91710658 Msa0387630:CDS 35.0%
AAGGTAGCAATCAATGGTTT+CGG - chr3_1:91710699-91710718 Msa0387630:CDS 35.0%
TTGACAACAATTACTTCGAG+TGG + chr3_1:91710774-91710793 None:intergenic 35.0%
GTAATTGTTGTCAATGACAG+TGG - chr3_1:91710780-91710799 Msa0387630:CDS 35.0%
CAACACAATTAAAGGAGCAA+TGG + chr3_1:91710834-91710853 None:intergenic 35.0%
!! TGTGTTGACTTAGTTTGCTT+TGG - chr3_1:91710847-91710866 Msa0387630:CDS 35.0%
! TCCTCTTGTTTCACATATTC+AGG - chr3_1:91710921-91710940 Msa0387630:intron 35.0%
TGGAATTGACATTGTCATTG+AGG - chr3_1:91711089-91711108 Msa0387630:intron 35.0%
! TGAATTTTTGTTCAGGGAAC+TGG - chr3_1:91711251-91711270 Msa0387630:intron 35.0%
AGCTGTGATGATAACTTTCT+TGG + chr3_1:91711324-91711343 None:intergenic 35.0%
GATATTCCAACTTACGTTGT+TGG - chr3_1:91711359-91711378 Msa0387630:CDS 35.0%
TTTACTCCAACAACGTAAGT+TGG + chr3_1:91711368-91711387 None:intergenic 35.0%
AAAGCCTTACCTTATGATGT+CGG + chr3_1:91711417-91711436 None:intergenic 35.0%
TTAAACTGTTTACCTCGTTG+TGG - chr3_1:91711442-91711461 Msa0387630:intron 35.0%
AAGATCCTGGATGAAGAATT+CGG - chr3_1:91711612-91711631 Msa0387630:CDS 35.0%
!!! AAGCTTGTTTTACTTATGCG+TGG - chr3_1:91711825-91711844 Msa0387630:intron 35.0%
AAGATTGACTAGGAAGCTAT+TGG + chr3_1:91711865-91711884 None:intergenic 35.0%
TTTCAGTTGGAAGATTGACT+AGG + chr3_1:91711875-91711894 None:intergenic 35.0%
GTCAATCTTCCAACTGAAAA+TGG - chr3_1:91711876-91711895 Msa0387630:intron 35.0%
ACAACTGAAACATTAGGTGT+TGG + chr3_1:91712208-91712227 None:intergenic 35.0%
AGGTCAACAACTGAAACATT+AGG + chr3_1:91712214-91712233 None:intergenic 35.0%
ACATCCAATACACCTTTCAA+TGG + chr3_1:91712310-91712329 None:intergenic 35.0%
!! TATTGACTCTTCCTTGACTA+TGG - chr3_1:91712384-91712403 Msa0387630:intron 35.0%
TTGCTTGGTATGACAATGAA+TGG - chr3_1:91712434-91712453 Msa0387630:intron 35.0%
TGCTTGGTATGACAATGAAT+GGG - chr3_1:91712435-91712454 Msa0387630:intron 35.0%
! GAACATCCATGCATCTTTTT+AGG - chr3_1:91712547-91712566 Msa0387630:intron 35.0%
! TCATCATTTGAGGTCTGTTT+GGG + chr3_1:91712789-91712808 None:intergenic 35.0%
! TTCATCATTTGAGGTCTGTT+TGG + chr3_1:91712790-91712809 None:intergenic 35.0%
CACATCTAGTAGCAAACAAA+TGG - chr3_1:91712917-91712936 Msa0387630:CDS 35.0%
CTTGGTTGCATCTATAGCTA+TGG - chr3_1:91709793-91709812 Msa0387630:three_prime_UTR 40.0%
TGTAGAAGCTAAAGCTGCAT+GGG + chr3_1:91709822-91709841 None:intergenic 40.0%
TTGTAGAAGCTAAAGCTGCA+TGG + chr3_1:91709823-91709842 None:intergenic 40.0%
GATGGAAATCTTGTGCTTGT+AGG + chr3_1:91709851-91709870 None:intergenic 40.0%
AGAAGACTCTCTAGCATTAC+TGG + chr3_1:91710063-91710082 None:intergenic 40.0%
TGTTTGTGTCAGTGCTTCAT+CGG + chr3_1:91710209-91710228 None:intergenic 40.0%
AACATCTTTGGTTACTGGAC+TGG - chr3_1:91710586-91710605 Msa0387630:CDS 40.0%
AGAGACTGTTGCCAAGTTAA+AGG - chr3_1:91710680-91710699 Msa0387630:CDS 40.0%
GAAGAAATTTCCTGAGATGC+TGG - chr3_1:91710730-91710749 Msa0387630:CDS 40.0%
ATTGTTGTCAATGACAGTGG+TGG - chr3_1:91710783-91710802 Msa0387630:CDS 40.0%
GCCTGAATATGTGAAACAAG+AGG + chr3_1:91710925-91710944 None:intergenic 40.0%
GGAGTAAATGAGCAAGACTA+CGG - chr3_1:91711380-91711399 Msa0387630:CDS 40.0%
! TTATGATGTCGGCTACTTCA+TGG + chr3_1:91711406-91711425 None:intergenic 40.0%
ATGAAGTAGCCGACATCATA+AGG - chr3_1:91711405-91711424 Msa0387630:intron 40.0%
GATGTTGAGGTTGAGAACAA+GGG - chr3_1:91711464-91711483 Msa0387630:intron 40.0%
TCATCCAGGATCTTCACAAA+GGG + chr3_1:91711606-91711625 None:intergenic 40.0%
TTCATCCAGGATCTTCACAA+AGG + chr3_1:91711607-91711626 None:intergenic 40.0%
!! TGATTAAGTGGCTTTGAGCT+AGG + chr3_1:91711699-91711718 None:intergenic 40.0%
ATGGTTCCCTTAACAATTCC+TGG + chr3_1:91711738-91711757 None:intergenic 40.0%
TGTTTCAGTTGTTGACCTTG+TGG - chr3_1:91712216-91712235 Msa0387630:CDS 40.0%
TGTCAATGCAGCATTCAGAA+AGG - chr3_1:91712273-91712292 Msa0387630:CDS 40.0%
TCTTCCTTGACTATGGTCAT+GGG - chr3_1:91712391-91712410 Msa0387630:intron 40.0%
TATGGTCATGGGAGATGATA+TGG - chr3_1:91712402-91712421 Msa0387630:intron 40.0%
GCTTGGTATGACAATGAATG+GGG - chr3_1:91712436-91712455 Msa0387630:intron 40.0%
ATGACAATGAATGGGGTTAC+AGG - chr3_1:91712443-91712462 Msa0387630:intron 40.0%
GCAGCAACTTTCATCATTTG+AGG + chr3_1:91712799-91712818 None:intergenic 40.0%
CAAATGATGAAAGTTGCTGC+TGG - chr3_1:91712799-91712818 Msa0387630:intron 40.0%
TGGTGATTTCAGTCAAAGAG+TGG - chr3_1:91712885-91712904 Msa0387630:CDS 40.0%
TGATTTCAGTCAAAGAGTGG+TGG - chr3_1:91712888-91712907 Msa0387630:CDS 40.0%
!! AACAAATGGCTTGCTTGTAG+AGG + chr3_1:91713062-91713081 None:intergenic 40.0%
AAAGAGTGAGAGGCCTTTGA+TGG + chr3_1:91709869-91709888 None:intergenic 45.0%
!! TTGAGTTGGGAAAGAGTGAG+AGG + chr3_1:91709879-91709898 None:intergenic 45.0%
!! CCTTTGAGGCACATTGAGTT+GGG + chr3_1:91709892-91709911 None:intergenic 45.0%
!! ACCTTTGAGGCACATTGAGT+TGG + chr3_1:91709893-91709912 None:intergenic 45.0%
CAGAGAGAGTGAAACCTTTG+AGG + chr3_1:91709906-91709925 None:intergenic 45.0%
CAAAGGTTTCACTCTCTCTG+TGG - chr3_1:91709906-91709925 Msa0387630:three_prime_UTR 45.0%
TTTGCTTGTGCAGAGACTTG+AGG - chr3_1:91709992-91710011 Msa0387630:CDS 45.0%
CTCTCTAGCATTACTGGCAT+AGG + chr3_1:91710057-91710076 None:intergenic 45.0%
CAACAAGTCTGCGTCGTATT+TGG + chr3_1:91710232-91710251 None:intergenic 45.0%
CATTGGATCAACTGCTGTGA+GGG - chr3_1:91710656-91710675 Msa0387630:CDS 45.0%
ATTGGATCAACTGCTGTGAG+GGG - chr3_1:91710657-91710676 Msa0387630:CDS 45.0%
ATCAATGGTTTCGGACGCAT+TGG - chr3_1:91710708-91710727 Msa0387630:CDS 45.0%
AATTTCCTGAGATGCTGGCA+CGG - chr3_1:91710735-91710754 Msa0387630:CDS 45.0%
CTGCTAGAGACAACAAGGAT+GGG + chr3_1:91711039-91711058 None:intergenic 45.0%
! CATCCTTGTTGTCTCTAGCA+GGG - chr3_1:91711038-91711057 Msa0387630:intron 45.0%
GGATCCTCTTAAGCTTCCTT+GGG - chr3_1:91711059-91711078 Msa0387630:intron 45.0%
TAACTTTCTTGGCACCTGCT+TGG + chr3_1:91711313-91711332 None:intergenic 45.0%
TATCATCACAGCTCCTGCAA+AGG - chr3_1:91711331-91711350 Msa0387630:intron 45.0%
ATCATCACAGCTCCTGCAAA+GGG - chr3_1:91711332-91711351 Msa0387630:intron 45.0%
GTAGCCGACATCATAAGGTA+AGG - chr3_1:91711410-91711429 Msa0387630:intron 45.0%
TTACCTCGTTGTGGATGTTG+AGG - chr3_1:91711451-91711470 Msa0387630:intron 45.0%
GGATGTTGAGGTTGAGAACA+AGG - chr3_1:91711463-91711482 Msa0387630:intron 45.0%
AAAGGGAGCAAGACAGTTTG+TGG + chr3_1:91711589-91711608 None:intergenic 45.0%
GCTTACCGAATTCTTCATCC+AGG + chr3_1:91711620-91711639 None:intergenic 45.0%
GTAGGAATGTGTGGTTGTCA+TGG + chr3_1:91711757-91711776 None:intergenic 45.0%
ACAACCACACATTCCTACAC+AGG - chr3_1:91711759-91711778 Msa0387630:intron 45.0%
ATATACCTGGTCTCCTGTGT+AGG + chr3_1:91711775-91711794 None:intergenic 45.0%
TGTATTTGTGCAGAGGCTTC+TGG - chr3_1:91712045-91712064 Msa0387630:intron 45.0%
!! ATTAGGTGTTGGCACACGAA+GGG + chr3_1:91712197-91712216 None:intergenic 45.0%
TCTTCGCAACATTCACCACA+AGG + chr3_1:91712234-91712253 None:intergenic 45.0%
TGTGGTGAATGTTGCGAAGA+AGG - chr3_1:91712234-91712253 Msa0387630:CDS 45.0%
GTGGTGAATGTTGCGAAGAA+GGG - chr3_1:91712235-91712254 Msa0387630:CDS 45.0%
! GGGACCATTGAAAGGTGTAT+TGG - chr3_1:91712303-91712322 Msa0387630:CDS 45.0%
TTGAAGAAACATCGGTGCAG+CGG + chr3_1:91712363-91712382 None:intergenic 45.0%
CTCTTCCTTGACTATGGTCA+TGG - chr3_1:91712390-91712409 Msa0387630:intron 45.0%
ATCTCCCATGACCATAGTCA+AGG + chr3_1:91712398-91712417 None:intergenic 45.0%
CATGGGAGATGATATGGTCA+AGG - chr3_1:91712408-91712427 Msa0387630:intron 45.0%
ATATGGTCAAGGTGGTTGCT+TGG - chr3_1:91712419-91712438 Msa0387630:intron 45.0%
!! CAGTCAAAGAGTGGTGGATT+TGG - chr3_1:91712894-91712913 Msa0387630:CDS 45.0%
CTAGTAGCAAACAAATGGCC+AGG - chr3_1:91712922-91712941 Msa0387630:CDS 45.0%
ACTTTGCATTCCTCATCGGA+CGG + chr3_1:91713000-91713019 None:intergenic 45.0%
! TGGGGGAGTAATGGAATGAG+TGG + chr3_1:91709648-91709667 None:intergenic 50.0%
TATGGTTGCTGGGGGAGTAA+TGG + chr3_1:91709657-91709676 None:intergenic 50.0%
AGAAGCTAAAGCTGCATGGG+TGG + chr3_1:91709819-91709838 None:intergenic 50.0%
CCCAACTCAATGTGCCTCAA+AGG - chr3_1:91709889-91709908 Msa0387630:three_prime_UTR 50.0%
CTTGAGGTGGCTGAATTCAG+TGG - chr3_1:91710008-91710027 Msa0387630:CDS 50.0%
!! CGACGCAGACTTGTTGACAA+TGG - chr3_1:91710236-91710255 Msa0387630:intron 50.0%
CCTCACAGCAGTTGATCCAA+TGG + chr3_1:91710658-91710677 None:intergenic 50.0%
CCATTGGATCAACTGCTGTG+AGG - chr3_1:91710655-91710674 Msa0387630:CDS 50.0%
CCTGCTAGAGACAACAAGGA+TGG + chr3_1:91711040-91711059 None:intergenic 50.0%
! CCATCCTTGTTGTCTCTAGC+AGG - chr3_1:91711037-91711056 Msa0387630:intron 50.0%
GATCCCTGCTAGAGACAACA+AGG + chr3_1:91711044-91711063 None:intergenic 50.0%
GGGATCCTCTTAAGCTTCCT+TGG - chr3_1:91711058-91711077 Msa0387630:intron 50.0%
TCAGCCCAAGGAAGCTTAAG+AGG + chr3_1:91711066-91711085 None:intergenic 50.0%
TCAATTCCAAGCTCAGCCCA+AGG + chr3_1:91711078-91711097 None:intergenic 50.0%
! TCAGGGAACTGGAGTGTTTG+TGG - chr3_1:91711262-91711281 Msa0387630:intron 50.0%
! GGAACTGGAGTGTTTGTGGA+TGG - chr3_1:91711266-91711285 Msa0387630:intron 50.0%
ACCTGCTTGGATGTGCTTTC+CGG + chr3_1:91711300-91711319 None:intergenic 50.0%
CAACCTCAACATCCACAACG+AGG + chr3_1:91711457-91711476 None:intergenic 50.0%
TGCTCCCTTTGTGAAGATCC+TGG - chr3_1:91711599-91711618 Msa0387630:CDS 50.0%
GTCTCCTGTGTAGGAATGTG+TGG + chr3_1:91711766-91711785 None:intergenic 50.0%
ACATTCCTACACAGGAGACC+AGG - chr3_1:91711767-91711786 Msa0387630:intron 50.0%
GCTTCTGGATGCTTCACACA+GGG - chr3_1:91712060-91712079 Msa0387630:intron 50.0%
TTGAGCTTTCCCTTGAGCTG+TGG + chr3_1:91712166-91712185 None:intergenic 50.0%
CAGCTCAAGGGAAAGCTCAA+CGG - chr3_1:91712166-91712185 Msa0387630:intron 50.0%
!! CATTAGGTGTTGGCACACGA+AGG + chr3_1:91712198-91712217 None:intergenic 50.0%
AGCATTCAGAAAGGCAGCTG+AGG - chr3_1:91712282-91712301 Msa0387630:CDS 50.0%
GCATTCAGAAAGGCAGCTGA+GGG - chr3_1:91712283-91712302 Msa0387630:CDS 50.0%
CGGAAGTCAACAGACACAAG+TGG + chr3_1:91712343-91712362 None:intergenic 50.0%
GGGAGATGATATGGTCAAGG+TGG - chr3_1:91712411-91712430 Msa0387630:intron 50.0%
GTCTCACAGAAGTCCTCCAA+TGG + chr3_1:91712973-91712992 None:intergenic 50.0%
CTTTGCATTCCTCATCGGAC+GGG + chr3_1:91712999-91713018 None:intergenic 50.0%
GCTTGTGCAGAGACTTGAGG+TGG - chr3_1:91709995-91710014 Msa0387630:CDS 55.0%
AGCTGCTCAACTCGCAACCA+AGG - chr3_1:91710097-91710116 Msa0387630:intron 55.0%
AAGCTTCCTTGGGCTGAGCT+TGG - chr3_1:91711069-91711088 Msa0387630:intron 55.0%
GGAATATCAGCGCCCTTTGC+AGG + chr3_1:91711347-91711366 None:intergenic 55.0%
GGCTTCTGGATGCTTCACAC+AGG - chr3_1:91712059-91712078 Msa0387630:intron 55.0%
ACAGGGACTTGAGAAGAGCC+AGG - chr3_1:91712077-91712096 Msa0387630:intron 55.0%
CAGGGACTTGAGAAGAGCCA+GGG - chr3_1:91712078-91712097 Msa0387630:intron 55.0%
AATGTTCAGTGCTGCAGCCC+TGG + chr3_1:91712098-91712117 None:intergenic 55.0%
AACATTGTCCCCACCAGCAC+AGG - chr3_1:91712112-91712131 Msa0387630:intron 55.0%
CAGCACTAGAGAGACAGCCT+TGG + chr3_1:91712143-91712162 None:intergenic 55.0%
TCTAGTGCTGCCACAGCTCA+AGG - chr3_1:91712153-91712172 Msa0387630:intron 55.0%
CTAGTGCTGCCACAGCTCAA+GGG - chr3_1:91712154-91712173 Msa0387630:intron 55.0%
GCAGCTGAGGGACCATTGAA+AGG - chr3_1:91712295-91712314 Msa0387630:CDS 55.0%
ATCTCCACTCCCTGCTTGAG+CGG + chr3_1:91712950-91712969 None:intergenic 55.0%
AGCAGGGAGTGGAGATCCAT+TGG - chr3_1:91712954-91712973 Msa0387630:CDS 55.0%
AGGGAGTGGAGATCCATTGG+AGG - chr3_1:91712957-91712976 Msa0387630:CDS 55.0%
TGAGACAAACCCGTCCGATG+AGG - chr3_1:91712987-91713006 Msa0387630:intron 55.0%
TTCGACCGTGCCAGCATCTC+AGG + chr3_1:91710743-91710762 None:intergenic 60.0%
GAGATGCTGGCACGGTCGAA+AGG - chr3_1:91710743-91710762 Msa0387630:CDS 60.0%
! GGAGTGTTTGTGGATGGCCC+TGG - chr3_1:91711272-91711291 Msa0387630:intron 60.0%
TTTGTGGATGGCCCTGGAGC+CGG - chr3_1:91711278-91711297 Msa0387630:intron 60.0%
GGATGTGCTTTCCGGCTCCA+GGG + chr3_1:91711292-91711311 None:intergenic 60.0%
TGGATGTGCTTTCCGGCTCC+AGG + chr3_1:91711293-91711312 None:intergenic 60.0%
! GCCGGAAAGCACATCCAAGC+AGG - chr3_1:91711296-91711315 Msa0387630:intron 60.0%
! TTGGCTGCTCCTGTGCTGGT+GGG + chr3_1:91712124-91712143 None:intergenic 60.0%
! TGGCTGCTCCTGTGCTGGTG+GGG + chr3_1:91712123-91712142 None:intergenic 65.0%
CTTGGCTGCTCCTGTGCTGG+TGG + chr3_1:91712125-91712144 None:intergenic 65.0%
CACCAGCACAGGAGCAGCCA+AGG - chr3_1:91712123-91712142 Msa0387630:intron 65.0%
AGCCTTGGCTGCTCCTGTGC+TGG + chr3_1:91712128-91712147 None:intergenic 65.0%
! TGGCCAGGCACCGCTCAAGC+AGG - chr3_1:91712937-91712956 Msa0387630:CDS 70.0%
! GGCCAGGCACCGCTCAAGCA+GGG - chr3_1:91712938-91712957 Msa0387630:CDS 70.0%
CTCCCTGCTTGAGCGGTGCC+TGG + chr3_1:91712943-91712962 None:intergenic 70.0%
GGCACCGCTCAAGCAGGGAG+TGG - chr3_1:91712943-91712962 Msa0387630:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 91709586 91713403 91709586 ID=Msa0387630;Name=Msa0387630
chr3_1 mRNA 91709586 91713403 91709586 ID=Msa0387630-mRNA-1;Parent=Msa0387630;Name=Msa0387630-mRNA-1;_AED=0.08;_eAED=0.08;_QI=226|1|1|1|0.88|0.8|10|296|451
chr3_1 exon 91709586 91709675 91709586 ID=Msa0387630-mRNA-1:exon:25664;Parent=Msa0387630-mRNA-1
chr3_1 exon 91709754 91710092 91709754 ID=Msa0387630-mRNA-1:exon:25663;Parent=Msa0387630-mRNA-1
chr3_1 exon 91710525 91710931 91710525 ID=Msa0387630-mRNA-1:exon:25662;Parent=Msa0387630-mRNA-1
chr3_1 exon 91711201 91711250 91711201 ID=Msa0387630-mRNA-1:exon:25661;Parent=Msa0387630-mRNA-1
chr3_1 exon 91711356 91711417 91711356 ID=Msa0387630-mRNA-1:exon:25660;Parent=Msa0387630-mRNA-1
chr3_1 exon 91711563 91711723 91711563 ID=Msa0387630-mRNA-1:exon:25659;Parent=Msa0387630-mRNA-1
chr3_1 exon 91711879 91712046 91711879 ID=Msa0387630-mRNA-1:exon:25658;Parent=Msa0387630-mRNA-1
chr3_1 exon 91712174 91712335 91712174 ID=Msa0387630-mRNA-1:exon:25657;Parent=Msa0387630-mRNA-1
chr3_1 exon 91712871 91712984 91712871 ID=Msa0387630-mRNA-1:exon:25656;Parent=Msa0387630-mRNA-1
chr3_1 exon 91713079 91713403 91713079 ID=Msa0387630-mRNA-1:exon:25655;Parent=Msa0387630-mRNA-1
chr3_1 five_prime_UTR 91713178 91713403 91713178 ID=Msa0387630-mRNA-1:five_prime_utr;Parent=Msa0387630-mRNA-1
chr3_1 CDS 91713079 91713177 91713079 ID=Msa0387630-mRNA-1:cds;Parent=Msa0387630-mRNA-1
chr3_1 CDS 91712871 91712984 91712871 ID=Msa0387630-mRNA-1:cds;Parent=Msa0387630-mRNA-1
chr3_1 CDS 91712174 91712335 91712174 ID=Msa0387630-mRNA-1:cds;Parent=Msa0387630-mRNA-1
chr3_1 CDS 91711879 91712046 91711879 ID=Msa0387630-mRNA-1:cds;Parent=Msa0387630-mRNA-1
chr3_1 CDS 91711563 91711723 91711563 ID=Msa0387630-mRNA-1:cds;Parent=Msa0387630-mRNA-1
chr3_1 CDS 91711356 91711417 91711356 ID=Msa0387630-mRNA-1:cds;Parent=Msa0387630-mRNA-1
chr3_1 CDS 91711201 91711250 91711201 ID=Msa0387630-mRNA-1:cds;Parent=Msa0387630-mRNA-1
chr3_1 CDS 91710525 91710931 91710525 ID=Msa0387630-mRNA-1:cds;Parent=Msa0387630-mRNA-1
chr3_1 CDS 91709960 91710092 91709960 ID=Msa0387630-mRNA-1:cds;Parent=Msa0387630-mRNA-1
chr3_1 three_prime_UTR 91709754 91709959 91709754 ID=Msa0387630-mRNA-1:three_prime_utr;Parent=Msa0387630-mRNA-1
chr3_1 three_prime_UTR 91709586 91709675 91709586 ID=Msa0387630-mRNA-1:three_prime_utr;Parent=Msa0387630-mRNA-1
Gene Sequence

>Msa0387630

ATGGCCACCCATGCAGCTTTAGCTTCTACAAGAATCCCTACAAGCACAAGATTTCCATCAAAGGCCTCTCACTCTTTCCCAACTCAATGTGCCTCAAAGAGACTTGAGGTGGCTGAATTCAGTGGACTAAAATCAACTTCATGCATTACCTATGCCAGTAATGCTAGAGAGTCTTCTTTTTCTGATGTTGTAGCTGCTCAACTCGCAACCAAGGCCATTGGATCAACTGCTGTGAGGGGAGAGACTGTTGCCAAGTTAAAGGTAGCAATCAATGGTTTCGGACGCATTGGAAGAAATTTCCTGAGATGCTGGCACGGTCGAAAGGACTCACCACTCGAAGTAATTGTTGTCAATGACAGTGGTGGTGTCAAGAATGCTTCACACTTGTTGAAATATGATTCTATGCTTGGAACATTTAAAGCAGATGTGAAAATACTAAATAATGAGACTATTACAGTTGATGGTAAGCCCATCCTTGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCTTGGGCTGAGCTTGGAATTGACATTGTCATTGAGGGAACTGGAGTGTTTGTGGATGGCCCTGGAGCCGGAAAGCACATCCAAGCAGGTGCCAAGAAAGTTATCATCACAGCTCCTGCAAAGGGCGCTGATATTCCAACTTACGTTGTTGGAGTAAATGAGCAAGACTACGGCCATGAAGTAGCCGACATCATAAGCAATGCTTCTTGCACCACAAACTGTCTTGCTCCCTTTGTGAAGATCCTGGATGAAGAATTCGGAATTGTTAAGGGAACCATGACAACCACACATTCCTACACAGGAGACCAGAGGCTTCTGGATGCTTCACACAGGGACTTGAGAAGAGCCAGGGCTGCAGCACTGAACATTGTCCCCACCAGCACAGGAGCAGCCAAGGCTGTCTCTCTAGTGCTGCCACAGCTCAAGGGAAAGCTCAACGGAATCGCCCTTCGTGTGCCAACACCTAATGTTTCAGTTGTTGACCTTGTGGTGAATGTTGCGAAGAAGGGTATTTCAGCTGAAGATGTCAATGCAGCATTCAGAAAGGCAGCTGAGGGACCATTGAAAGGTGTATTGGATGTCTGTGATGTTCCACTTGTGTCTGTTGACTTCCGCTGCACCGATGTTTCTTCAACTATTGACTCTTCCTTGACTATGGTCATGGGAGATGATATGGTCAAGGTGGTTGCTTGGTATGACAATGAATGGGGTTACAGTCAAAGAGTGGTGGATTTGGCACATCTAGTAGCAAACAAATGGCCAGGCACCGCTCAAGCAGGGAGTGGAGATCCATTGGAGGACTTCTGTGAGACAAACCCGTCCGATGAGGAATGCAAAGTTTATGAATAG

Protein sequence

>Msa0387630

MATHAALASTRIPTSTRFPSKASHSFPTQCASKRLEVAEFSGLKSTSCITYASNARESSFSDVVAAQLATKAIGSTAVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGGVKNASHLLKYDSMLGTFKADVKILNNETITVDGKPILVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEQDYGHEVADIISNASCTTNCLAPFVKILDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVAKKGISAEDVNAAFRKAAEGPLKGVLDVCDVPLVSVDFRCTDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANKWPGTAQAGSGDPLEDFCETNPSDEECKVYE*