AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0463030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0463030 MtrunA17_Chr3g0113101 99.742 387 1 0 1 387 1 387 0.0 792
Msa0463030 MtrunA17_Chr2g0278581 31.915 282 167 10 116 379 67 341 3.42e-23 99.4
Msa0463030 MtrunA17_Chr7g0241071 28.720 289 171 9 115 371 125 410 3.75e-20 91.3
Msa0463030 MtrunA17_Chr6g0463901 28.253 269 165 8 116 364 67 327 1.55e-18 85.9
Msa0463030 MtrunA17_Chr4g0049821 26.761 284 167 14 120 378 124 391 1.19e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0463030 AT3G55800.1 79.949 394 71 3 1 387 1 393 0.0 647
Msa0463030 AT1G43670.1 31.061 264 164 5 116 364 67 327 1.52e-22 97.8
Msa0463030 AT5G64380.1 25.786 318 183 14 86 368 90 389 1.38e-14 75.1

Find 126 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGTCTAGCACAGATTTA+TGG 0.166276 3_3:-62262641 None:intergenic
TTGAAATCAAGCTCTTTATT+TGG 0.186892 3_3:+62260274 Msa0463030:CDS
ATTTAGTTCTAGTCATAAAT+AGG 0.198228 3_3:-62262890 None:intergenic
ACACAATGTGTTAACTCTTT+TGG 0.201562 3_3:+62260667 Msa0463030:CDS
GTAAATTCCGAATTGCTTAA+TGG 0.211059 3_3:-62262967 None:intergenic
TCACTCCCTCTTCTGCCTTC+AGG 0.230507 3_3:+62260079 Msa0463030:CDS
GTCATAACCAAATGCGAAAT+TGG 0.262915 3_3:+62260358 Msa0463030:CDS
CAATTGATATTTCAGGAAAA+TGG 0.276601 3_3:+62262074 Msa0463030:intron
CACTTATGTACTTGCACTTA+AGG 0.290701 3_3:+62261863 Msa0463030:CDS
GATAGAACTCAAGTTGCTTA+TGG 0.316106 3_3:+62262681 Msa0463030:CDS
GTCAAAGAGACTCATGAAAT+TGG 0.322823 3_3:+62262103 Msa0463030:CDS
CACTCCCTCTTCTGCCTTCA+GGG 0.336824 3_3:+62260080 Msa0463030:CDS
TTCACAGTAGGCACCATCTT+TGG 0.339734 3_3:+62261759 Msa0463030:CDS
GTTGCATTTGACCCTCTTGA+TGG 0.343626 3_3:+62261714 Msa0463030:CDS
GATCAAAGAATGAGGTCATT+AGG 0.344384 3_3:+62262703 Msa0463030:CDS
AACGTGGCTCTCAAATTTCC+AGG 0.345781 3_3:-62262145 None:intergenic
ACTGTCGCCAATTTCGCATT+TGG 0.348976 3_3:-62260365 None:intergenic
ATCTAAGCATCTAGACATTA+AGG 0.350021 3_3:+62262937 Msa0463030:three_prime_UTR
TTTAGTTCTAGTCATAAATA+GGG 0.364278 3_3:-62262889 None:intergenic
AGAGGGAGTGATGGAGGGTA+GGG 0.378558 3_3:-62260067 None:intergenic
CTCAACTTGGCTTTGGCAGT+TGG 0.380041 3_3:-62262552 None:intergenic
AAGAGGGAGTGATGGAGGGT+AGG 0.386970 3_3:-62260068 None:intergenic
CTTCCTTCCATTAAGCAATT+CGG 0.389996 3_3:+62262960 Msa0463030:three_prime_UTR
CAGATTATTGTAAAAGAAAA+GGG 0.391090 3_3:+62262507 Msa0463030:intron
GCAGATTATTGTAAAAGAAA+AGG 0.393674 3_3:+62262506 Msa0463030:intron
CCTCCCATGTCTTGAAGCTC+AGG 0.399582 3_3:-62261564 None:intergenic
GATAAGTTGATTGGAGTAAC+AGG 0.403692 3_3:+62261795 Msa0463030:CDS
GATGGAGGGTAGGGAGTGTT+TGG 0.409911 3_3:-62260058 None:intergenic
AGTTACAAACTAGCAAATAT+TGG 0.411486 3_3:+62259724 Msa0463030:five_prime_UTR
AAATATAATTTATGTTCAAA+TGG 0.412027 3_3:+62262909 Msa0463030:three_prime_UTR
GGCAGAAGAGGGAGTGATGG+AGG 0.413966 3_3:-62260073 None:intergenic
GCAAGTACATAAGTGGTTCT+AGG 0.415518 3_3:-62261855 None:intergenic
AATTATGACATACCATCAAC+TGG 0.427130 3_3:-62261588 None:intergenic
ATGCGAAATTGGCGACAGTT+TGG 0.435500 3_3:+62260369 Msa0463030:CDS
AAAATTTCAAAATGAAATGT+AGG 0.437363 3_3:-62262800 None:intergenic
CAACAGTCTCAACTTGGCTT+TGG 0.442108 3_3:-62262559 None:intergenic
TAAGGGACTGATTAGGTTGA+TGG 0.455534 3_3:+62260582 Msa0463030:CDS
AGATCAAGTTGCTGCAGCTA+TGG 0.458553 3_3:+62261821 Msa0463030:CDS
AGGTTTGAAGAAACATTGTA+TGG 0.459432 3_3:+62262723 Msa0463030:CDS
GTCAAAGGCGACACCGGATA+AGG 0.461477 3_3:+62260564 Msa0463030:CDS
GACATGGGAGGTCCAGTTGA+TGG 0.468525 3_3:+62261576 Msa0463030:CDS
GTCTTGTATAGGAAGAGATA+TGG 0.469412 3_3:-62259764 None:intergenic
TCAAAGGCGACACCGGATAA+GGG 0.472586 3_3:+62260565 Msa0463030:CDS
AACCTAATCAGTCCCTTATC+CGG 0.476945 3_3:-62260577 None:intergenic
GCAGAAGTGAGAGTGTTTCA+AGG 0.477074 3_3:-62261517 None:intergenic
GAATTTCTACTTCTTGATGA+AGG 0.478553 3_3:+62261903 Msa0463030:CDS
GAAGGCAGAAGAGGGAGTGA+TGG 0.480102 3_3:-62260076 None:intergenic
TTGCATCACAAATATTTATG+TGG 0.480738 3_3:-62259797 None:intergenic
GCTTAAGCACTTGCTCCAAC+AGG 0.481475 3_3:-62262771 None:intergenic
AGTAGAAATTCATGAGTGCC+GGG 0.495020 3_3:-62261891 None:intergenic
AAGTAGAAATTCATGAGTGC+CGG 0.495327 3_3:-62261892 None:intergenic
CTCAAACAACAGTCTCAACT+TGG 0.497480 3_3:-62262565 None:intergenic
TTTACACAGGTTGAGTTTGA+AGG 0.498656 3_3:+62262985 Msa0463030:three_prime_UTR
AACATCCGGCACCATTCCTC+CGG 0.502390 3_3:-62262323 None:intergenic
TAGGCACCATCTTTGGTGTA+TGG 0.505757 3_3:+62261766 Msa0463030:CDS
GGACTCTTGATTGAAAATGC+TGG 0.508257 3_3:+62262600 Msa0463030:CDS
CTTAAGTGCAAGTACATAAG+TGG 0.510456 3_3:-62261862 None:intergenic
GATCAAGTTGCTGCAGCTAT+GGG 0.517665 3_3:+62261822 Msa0463030:CDS
ACCATCTTTGGTGTATGGCC+TGG 0.525808 3_3:+62261771 Msa0463030:CDS
CACCGGATAAGGGACTGATT+AGG 0.526285 3_3:+62260575 Msa0463030:CDS
CAAGTTGAGACTGTTGTTTG+AGG 0.526367 3_3:+62262566 Msa0463030:CDS
TGGCCTGGTGATAAGTTGAT+TGG 0.529285 3_3:+62261786 Msa0463030:CDS
ACCAGGCCATACACCAAAGA+TGG 0.537327 3_3:-62261772 None:intergenic
TTGTTTGAGGTAGCTCCACT+AGG 0.539985 3_3:+62262579 Msa0463030:CDS
GCAGAAGAGGGAGTGATGGA+GGG 0.545840 3_3:-62260072 None:intergenic
GTAGGAAGAATTCTTGTCAA+AGG 0.549312 3_3:+62260549 Msa0463030:intron
GATTAGGTTGATGGTGTGCA+TGG 0.550231 3_3:+62260591 Msa0463030:CDS
ATATTTATGTGGTTGTGCTA+TGG 0.554917 3_3:-62259786 None:intergenic
CTCAAGGGTGGTGTACCTGT+TGG 0.557393 3_3:+62262756 Msa0463030:CDS
CTTGCACTTAAGGACTTCCC+CGG 0.558366 3_3:+62261873 Msa0463030:CDS
ATTCCGAATTGCTTAATGGA+AGG 0.558767 3_3:-62262963 None:intergenic
AAAAGAACCTGGTTAACATC+CGG 0.559892 3_3:-62262337 None:intergenic
GAAGGAAAACTATTCTCCCC+TGG 0.564395 3_3:+62262127 Msa0463030:CDS
GCAACTTGCAGTGGATATGC+TGG 0.564658 3_3:+62260696 Msa0463030:CDS
AATGGTGCCGGATGTTAACC+AGG 0.565507 3_3:+62262330 Msa0463030:CDS
AAACATTGTATGGTTCATCA+AGG 0.565959 3_3:+62262733 Msa0463030:CDS
GTATGGTTCATCAAGGCTCA+AGG 0.566669 3_3:+62262740 Msa0463030:CDS
GTTGTGCTATGGTCTTGTAT+AGG 0.567533 3_3:-62259775 None:intergenic
AATCCCTGAGCTTCAAGACA+TGG 0.568565 3_3:+62261560 Msa0463030:CDS
GCTGGAGGTTACAGCAGTGA+TGG 0.571612 3_3:+62262618 Msa0463030:CDS
ATTGAGATACACCGGAGGAA+TGG 0.572312 3_3:+62262312 Msa0463030:CDS
ATGTCTAGATGCTTAGATGT+TGG 0.572500 3_3:-62262932 None:intergenic
CCATAAATCTGTGCTAGACA+AGG 0.577457 3_3:+62262641 Msa0463030:CDS
TGACAATGCAGATTATGCTA+AGG 0.577947 3_3:+62262168 Msa0463030:CDS
ACATGCTATACTAGTTTCCA+TGG 0.581877 3_3:-62260001 None:intergenic
TATTATTGTGCATACCCTGA+AGG 0.582360 3_3:-62260094 None:intergenic
GTGGCATGTGATGAATAGAT+AGG 0.582573 3_3:-62259852 None:intergenic
TTGTATAGGAAGAGATATGG+TGG 0.585414 3_3:-62259761 None:intergenic
GTAGACACAAATTTCACAGT+AGG 0.585426 3_3:+62261747 Msa0463030:CDS
TGGGGATGAGCAACTTGCAG+TGG 0.586212 3_3:+62260687 Msa0463030:CDS
ATCCCTGAGCTTCAAGACAT+GGG 0.586854 3_3:+62261561 Msa0463030:CDS
ATTCTTGTCAAAGGCGACAC+CGG 0.589868 3_3:+62260558 Msa0463030:CDS
ACTACGAAGAAAAGCACCAC+TGG 0.593568 3_3:-62260028 None:intergenic
CTCCCATGTCTTGAAGCTCA+GGG 0.593677 3_3:-62261563 None:intergenic
GTGAAGACAGCTTCTTGTGG+TGG 0.596604 3_3:+62260643 Msa0463030:CDS
ATATAGCAATTATAGATATG+TGG 0.597775 3_3:-62259897 None:intergenic
CATACCCTGAAGGCAGAAGA+GGG 0.598076 3_3:-62260084 None:intergenic
GAGACTCATGAAATTGGTGA+AGG 0.599892 3_3:+62262109 Msa0463030:CDS
TGTATAGGAAGAGATATGGT+GGG 0.601117 3_3:-62259760 None:intergenic
TATGGTTCATCAAGGCTCAA+GGG 0.610673 3_3:+62262741 Msa0463030:CDS
CTCTTGATTGAAAATGCTGG+AGG 0.611258 3_3:+62262603 Msa0463030:CDS
ACGTGGCTCTCAAATTTCCA+GGG 0.611538 3_3:-62262144 None:intergenic
GCATACCCTGAAGGCAGAAG+AGG 0.613244 3_3:-62260085 None:intergenic
AAGCAATTCGGAATTTACAC+AGG 0.613950 3_3:+62262972 Msa0463030:three_prime_UTR
ATACACCGGAGGAATGGTGC+CGG 0.622946 3_3:+62262318 Msa0463030:CDS
TGCTTATGGATCAAAGAATG+AGG 0.624161 3_3:+62262695 Msa0463030:CDS
AAATACACATTGAGATACAC+CGG 0.625848 3_3:+62262304 Msa0463030:CDS
GTATAGGAAGAGATATGGTG+GGG 0.629809 3_3:-62259759 None:intergenic
ACTCCAATCAACTTATCACC+AGG 0.643314 3_3:-62261789 None:intergenic
AGTATAGCATGTTACTCCAG+TGG 0.647366 3_3:+62260012 Msa0463030:CDS
TAATCAGAATCTAAATGCAG+CGG 0.649739 3_3:+62263117 Msa0463030:three_prime_UTR
ACTATGCTTGAACCATCAAG+AGG 0.650576 3_3:-62261726 None:intergenic
TATAGGAAGAGATATGGTGG+GGG 0.657342 3_3:-62259758 None:intergenic
TCTATTCATCACATGCCACA+TGG 0.658867 3_3:+62259856 Msa0463030:five_prime_UTR
ATTAGGTTGATGGTGTGCAT+GGG 0.661036 3_3:+62260592 Msa0463030:CDS
AAAGTGAAGACAGCTTCTTG+TGG 0.674964 3_3:+62260640 Msa0463030:CDS
ATAATCTGCATTGTCAAACG+TGG 0.681581 3_3:-62262161 None:intergenic
CTATGCTTGAACCATCAAGA+GGG 0.684004 3_3:-62261725 None:intergenic
GGTTCATCAAGGCTCAAGGG+TGG 0.686247 3_3:+62262744 Msa0463030:CDS
ATAGGAAGAGATATGGTGGG+GGG 0.687951 3_3:-62259757 None:intergenic
TAGGAAGAGATATGGTGGGG+GGG 0.691506 3_3:-62259756 None:intergenic
GTAGAAATTCATGAGTGCCG+GGG 0.695072 3_3:-62261890 None:intergenic
CGTGGCTCTCAAATTTCCAG+GGG 0.699176 3_3:-62262143 None:intergenic
CCTGAGCTTCAAGACATGGG+AGG 0.706034 3_3:+62261564 Msa0463030:CDS
TACACATTGAGATACACCGG+AGG 0.744654 3_3:+62262307 Msa0463030:CDS
ATTATGCATGTAGTGCCATG+TGG 0.745934 3_3:-62259871 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTCAATGATTAATTTAT+TGG + chr3_3:62260134-62260153 Msa0463030:intron 10.0%
!! AAACAATTAAAATTTATGAA+AGG + chr3_3:62261108-62261127 Msa0463030:intron 10.0%
!! ATGAAATAAAGAAAAAAAAA+AGG - chr3_3:62261204-62261223 None:intergenic 10.0%
!! AAATATAATTTATGTTCAAA+TGG + chr3_3:62262909-62262928 Msa0463030:three_prime_UTR 10.0%
!! AGAGAAAATAAAATTTAACA+AGG - chr3_3:62261067-62261086 None:intergenic 15.0%
!!! TTTCTTTATTTCATAATAGT+AGG + chr3_3:62261210-62261229 Msa0463030:intron 15.0%
!! TTGACCAAAAAAAATAAAAA+TGG + chr3_3:62261440-62261459 Msa0463030:intron 15.0%
!!! ATATATAATTTTTGAGTGTA+TGG + chr3_3:62261653-62261672 Msa0463030:intron 15.0%
!! AAAATTTCAAAATGAAATGT+AGG - chr3_3:62262803-62262822 None:intergenic 15.0%
!! ATATAGCAATTATAGATATG+TGG - chr3_3:62259900-62259919 None:intergenic 20.0%
!! AATAAAATTTAACAAGGAAG+TGG - chr3_3:62261061-62261080 None:intergenic 20.0%
!! TGTTTCAATAAATGAACTTT+AGG - chr3_3:62261093-62261112 None:intergenic 20.0%
!!! GATGCCATTTTTATTTTTTT+TGG - chr3_3:62261447-62261466 None:intergenic 20.0%
!!! CAATATTTTTAGTGATAGTT+TGG - chr3_3:62261617-62261636 None:intergenic 20.0%
!! AGATTTATGAGATTCTAATA+AGG + chr3_3:62261942-62261961 Msa0463030:intron 20.0%
!!! AATTGGATAATTTTGTCATA+TGG - chr3_3:62262059-62262078 None:intergenic 20.0%
!! AATTATCCAATTGATATTTC+AGG + chr3_3:62262067-62262086 Msa0463030:intron 20.0%
!!! AGTGAAGTAATTTTATATCA+AGG - chr3_3:62262396-62262415 None:intergenic 20.0%
!! CAGATTATTGTAAAAGAAAA+GGG + chr3_3:62262507-62262526 Msa0463030:intron 20.0%
!!! TTTAGTTCTAGTCATAAATA+GGG - chr3_3:62262892-62262911 None:intergenic 20.0%
!!! ATTTAGTTCTAGTCATAAAT+AGG - chr3_3:62262893-62262912 None:intergenic 20.0%
! AGTTACAAACTAGCAAATAT+TGG + chr3_3:62259724-62259743 Msa0463030:five_prime_UTR 25.0%
! TTGCATCACAAATATTTATG+TGG - chr3_3:62259800-62259819 None:intergenic 25.0%
!!! TATGTTGAAAAGTTTTGATG+AGG - chr3_3:62259967-62259986 None:intergenic 25.0%
!!! ATAATTTTTTTTTGCAGCCA+TGG + chr3_3:62259984-62260003 Msa0463030:exon 25.0%
! TTGAAATCAAGCTCTTTATT+TGG + chr3_3:62260274-62260293 Msa0463030:CDS 25.0%
!! AATCAACACTTAAGTTTTCA+AGG + chr3_3:62260320-62260339 Msa0463030:CDS 25.0%
!! ATCAACACTTAAGTTTTCAA+GGG + chr3_3:62260321-62260340 Msa0463030:CDS 25.0%
!! AAACTGTTTTCATAAGCTAA+TGG - chr3_3:62260504-62260523 None:intergenic 25.0%
! TGTTGATGTTTGTATATTGT+AGG + chr3_3:62260531-62260550 Msa0463030:intron 25.0%
! ACTAATCTATGTGCATAAAT+TGG - chr3_3:62260781-62260800 None:intergenic 25.0%
!!! AAACATGTTTTGTTATGATG+AGG + chr3_3:62261131-62261150 Msa0463030:intron 25.0%
!! GATATTGCATTTTATATGCA+GGG + chr3_3:62261281-62261300 Msa0463030:intron 25.0%
!! ATATTGCATTTTATATGCAG+GGG + chr3_3:62261282-62261301 Msa0463030:intron 25.0%
! ATAGACCAAAAAAATGTTTG+AGG + chr3_3:62262020-62262039 Msa0463030:intron 25.0%
!!! GATTTCCTCAAACATTTTTT+TGG - chr3_3:62262028-62262047 None:intergenic 25.0%
!! CATTTTCCTGAAATATCAAT+TGG - chr3_3:62262076-62262095 None:intergenic 25.0%
! CAATTGATATTTCAGGAAAA+TGG + chr3_3:62262074-62262093 Msa0463030:intron 25.0%
! GCAGATTATTGTAAAAGAAA+AGG + chr3_3:62262506-62262525 Msa0463030:intron 25.0%
ATATTTATGTGGTTGTGCTA+TGG - chr3_3:62259789-62259808 None:intergenic 30.0%
! GCTAATGAAACTGTATTTTG+AGG - chr3_3:62259833-62259852 None:intergenic 30.0%
TGCATTGAAAAAAAGAGAGT+GGG - chr3_3:62259929-62259948 None:intergenic 30.0%
TTGCATTGAAAAAAAGAGAG+TGG - chr3_3:62259930-62259949 None:intergenic 30.0%
! ACACAATGTGTTAACTCTTT+TGG + chr3_3:62260667-62260686 Msa0463030:CDS 30.0%
! CACAATGTGTTAACTCTTTT+GGG + chr3_3:62260668-62260687 Msa0463030:CDS 30.0%
! ACAATGTGTTAACTCTTTTG+GGG + chr3_3:62260669-62260688 Msa0463030:CDS 30.0%
!! TTATGCACATAGATTAGTCT+TGG + chr3_3:62260783-62260802 Msa0463030:intron 30.0%
AAAGCCACATATTCATGTTA+TGG - chr3_3:62260830-62260849 None:intergenic 30.0%
! GGATATTGCATTTTATATGC+AGG + chr3_3:62261280-62261299 Msa0463030:intron 30.0%
ACAATTTAATTGTGGAGAAG+TGG - chr3_3:62261341-62261360 None:intergenic 30.0%
AATTATGACATACCATCAAC+TGG - chr3_3:62261591-62261610 None:intergenic 30.0%
TCATAATATACGCATCTAAC+AGG + chr3_3:62261681-62261700 Msa0463030:intron 30.0%
GAATTTCTACTTCTTGATGA+AGG + chr3_3:62261903-62261922 Msa0463030:CDS 30.0%
AAATACACATTGAGATACAC+CGG + chr3_3:62262304-62262323 Msa0463030:CDS 30.0%
AGGTTTGAAGAAACATTGTA+TGG + chr3_3:62262723-62262742 Msa0463030:CDS 30.0%
AAACATTGTATGGTTCATCA+AGG + chr3_3:62262733-62262752 Msa0463030:CDS 30.0%
ATCTAAGCATCTAGACATTA+AGG + chr3_3:62262937-62262956 Msa0463030:three_prime_UTR 30.0%
GTAAATTCCGAATTGCTTAA+TGG - chr3_3:62262970-62262989 None:intergenic 30.0%
TGTATAGGAAGAGATATGGT+GGG - chr3_3:62259763-62259782 None:intergenic 35.0%
TTGTATAGGAAGAGATATGG+TGG - chr3_3:62259764-62259783 None:intergenic 35.0%
GTCTTGTATAGGAAGAGATA+TGG - chr3_3:62259767-62259786 None:intergenic 35.0%
GAAAAAAAGAGAGTGGGAAT+GGG - chr3_3:62259923-62259942 None:intergenic 35.0%
TGAAAAAAAGAGAGTGGGAA+TGG - chr3_3:62259924-62259943 None:intergenic 35.0%
! ACATGCTATACTAGTTTCCA+TGG - chr3_3:62260004-62260023 None:intergenic 35.0%
TATTATTGTGCATACCCTGA+AGG - chr3_3:62260097-62260116 None:intergenic 35.0%
GTCATAACCAAATGCGAAAT+TGG + chr3_3:62260358-62260377 Msa0463030:CDS 35.0%
GTAGGAAGAATTCTTGTCAA+AGG + chr3_3:62260549-62260568 Msa0463030:intron 35.0%
! GGCTAACAATCTTCTTTTTG+AGG + chr3_3:62260717-62260736 Msa0463030:CDS 35.0%
ATGTTATGGATCCAATGTCT+AGG - chr3_3:62260816-62260835 None:intergenic 35.0%
GGATCCATAACATGAATATG+TGG + chr3_3:62260823-62260842 Msa0463030:intron 35.0%
! TGAATATGTGGCTTTTATGC+AGG + chr3_3:62260835-62260854 Msa0463030:intron 35.0%
AGTTCTTGTAGGAATCTCAT+TGG - chr3_3:62260905-62260924 None:intergenic 35.0%
AGCTCATGGAGATAATAAGA+TGG - chr3_3:62261245-62261264 None:intergenic 35.0%
GAGCTCACACAATTTAATTG+TGG - chr3_3:62261349-62261368 None:intergenic 35.0%
TAATATACGCATCTAACAGG+AGG + chr3_3:62261684-62261703 Msa0463030:intron 35.0%
GTAGACACAAATTTCACAGT+AGG + chr3_3:62261747-62261766 Msa0463030:CDS 35.0%
!! GATAAGTTGATTGGAGTAAC+AGG + chr3_3:62261795-62261814 Msa0463030:CDS 35.0%
CTTAAGTGCAAGTACATAAG+TGG - chr3_3:62261865-62261884 None:intergenic 35.0%
CACTTATGTACTTGCACTTA+AGG + chr3_3:62261863-62261882 Msa0463030:CDS 35.0%
AAGTAGAAATTCATGAGTGC+CGG - chr3_3:62261895-62261914 None:intergenic 35.0%
GTCAAAGAGACTCATGAAAT+TGG + chr3_3:62262103-62262122 Msa0463030:CDS 35.0%
ATAATCTGCATTGTCAAACG+TGG - chr3_3:62262164-62262183 None:intergenic 35.0%
TGACAATGCAGATTATGCTA+AGG + chr3_3:62262168-62262187 Msa0463030:CDS 35.0%
!! TTCGTTTTTCATCCCTTAGT+TGG + chr3_3:62262261-62262280 Msa0463030:intron 35.0%
CATAGTAATCGACCAACTAA+GGG - chr3_3:62262276-62262295 None:intergenic 35.0%
ACATAGTAATCGACCAACTA+AGG - chr3_3:62262277-62262296 None:intergenic 35.0%
AAAAGAACCTGGTTAACATC+CGG - chr3_3:62262340-62262359 None:intergenic 35.0%
AATGTGTTGAGAAAAGAACC+TGG - chr3_3:62262351-62262370 None:intergenic 35.0%
! TTTTCAATCAAGAGTCCTAG+TGG - chr3_3:62262597-62262616 None:intergenic 35.0%
! GATAGAACTCAAGTTGCTTA+TGG + chr3_3:62262681-62262700 Msa0463030:CDS 35.0%
TGCTTATGGATCAAAGAATG+AGG + chr3_3:62262695-62262714 Msa0463030:CDS 35.0%
GATCAAAGAATGAGGTCATT+AGG + chr3_3:62262703-62262722 Msa0463030:CDS 35.0%
ATGTCTAGATGCTTAGATGT+TGG - chr3_3:62262935-62262954 None:intergenic 35.0%
CTTCCTTCCATTAAGCAATT+CGG + chr3_3:62262960-62262979 Msa0463030:three_prime_UTR 35.0%
ATTCCGAATTGCTTAATGGA+AGG - chr3_3:62262966-62262985 None:intergenic 35.0%
AAGCAATTCGGAATTTACAC+AGG + chr3_3:62262972-62262991 Msa0463030:three_prime_UTR 35.0%
! TTTACACAGGTTGAGTTTGA+AGG + chr3_3:62262985-62263004 Msa0463030:three_prime_UTR 35.0%
AAGGTGAGAAAAACACAAGA+AGG + chr3_3:62263004-62263023 Msa0463030:three_prime_UTR 35.0%
AGGTGAGAAAAACACAAGAA+GGG + chr3_3:62263005-62263024 Msa0463030:three_prime_UTR 35.0%
! GATCAGTGTGTTCAGTTTTT+AGG - chr3_3:62263067-62263086 None:intergenic 35.0%
TATAGGAAGAGATATGGTGG+GGG - chr3_3:62259761-62259780 None:intergenic 40.0%
GTATAGGAAGAGATATGGTG+GGG - chr3_3:62259762-62259781 None:intergenic 40.0%
!! GTTGTGCTATGGTCTTGTAT+AGG - chr3_3:62259778-62259797 None:intergenic 40.0%
GTGGCATGTGATGAATAGAT+AGG - chr3_3:62259855-62259874 None:intergenic 40.0%
TCTATTCATCACATGCCACA+TGG + chr3_3:62259856-62259875 Msa0463030:five_prime_UTR 40.0%
ATTATGCATGTAGTGCCATG+TGG - chr3_3:62259874-62259893 None:intergenic 40.0%
AGTATAGCATGTTACTCCAG+TGG + chr3_3:62260012-62260031 Msa0463030:CDS 40.0%
TGGTGAGTTACTTACATGTG+TGG + chr3_3:62260389-62260408 Msa0463030:intron 40.0%
AACCTAATCAGTCCCTTATC+CGG - chr3_3:62260580-62260599 None:intergenic 40.0%
!! TAAGGGACTGATTAGGTTGA+TGG + chr3_3:62260582-62260601 Msa0463030:CDS 40.0%
!! ATTAGGTTGATGGTGTGCAT+GGG + chr3_3:62260592-62260611 Msa0463030:CDS 40.0%
AAAGTGAAGACAGCTTCTTG+TGG + chr3_3:62260640-62260659 Msa0463030:CDS 40.0%
TTGGTCCAATTCCTAGACAT+TGG + chr3_3:62260802-62260821 Msa0463030:intron 40.0%
TGGATCCAATGTCTAGGAAT+TGG - chr3_3:62260810-62260829 None:intergenic 40.0%
AGGTGTGGAAAAGTTCTTGT+AGG - chr3_3:62260916-62260935 None:intergenic 40.0%
CTTCGGGATAACACACTTAA+AGG + chr3_3:62260944-62260963 Msa0463030:intron 40.0%
! TGCATTTTATATGCAGGGGT+CGG + chr3_3:62261286-62261305 Msa0463030:intron 40.0%
!! TTTTTGGTCAAGTAGCCTAG+TGG - chr3_3:62261431-62261450 None:intergenic 40.0%
GTCACCAAATTTCTATGCAC+AGG + chr3_3:62261494-62261513 Msa0463030:intron 40.0%
AAGGCCTGTGCATAGAAATT+TGG - chr3_3:62261501-62261520 None:intergenic 40.0%
CTATGCTTGAACCATCAAGA+GGG - chr3_3:62261728-62261747 None:intergenic 40.0%
ACTATGCTTGAACCATCAAG+AGG - chr3_3:62261729-62261748 None:intergenic 40.0%
ACTCCAATCAACTTATCACC+AGG - chr3_3:62261792-62261811 None:intergenic 40.0%
GCAAGTACATAAGTGGTTCT+AGG - chr3_3:62261858-62261877 None:intergenic 40.0%
AGTAGAAATTCATGAGTGCC+GGG - chr3_3:62261894-62261913 None:intergenic 40.0%
GAGACTCATGAAATTGGTGA+AGG + chr3_3:62262109-62262128 Msa0463030:CDS 40.0%
CTCAAACAACAGTCTCAACT+TGG - chr3_3:62262568-62262587 None:intergenic 40.0%
! CAAGTTGAGACTGTTGTTTG+AGG + chr3_3:62262566-62262585 Msa0463030:CDS 40.0%
GGACTCTTGATTGAAAATGC+TGG + chr3_3:62262600-62262619 Msa0463030:CDS 40.0%
CTCTTGATTGAAAATGCTGG+AGG + chr3_3:62262603-62262622 Msa0463030:CDS 40.0%
CCTTGTCTAGCACAGATTTA+TGG - chr3_3:62262644-62262663 None:intergenic 40.0%
CCATAAATCTGTGCTAGACA+AGG + chr3_3:62262641-62262660 Msa0463030:CDS 40.0%
TATGGTTCATCAAGGCTCAA+GGG + chr3_3:62262741-62262760 Msa0463030:CDS 40.0%
GGTGAGAAAAACACAAGAAG+GGG + chr3_3:62263006-62263025 Msa0463030:three_prime_UTR 40.0%
GTGAGAAAAACACAAGAAGG+GGG + chr3_3:62263007-62263026 Msa0463030:three_prime_UTR 40.0%
TGAGAAAAACACAAGAAGGG+GGG + chr3_3:62263008-62263027 Msa0463030:three_prime_UTR 40.0%
! ATAGGAAGAGATATGGTGGG+GGG - chr3_3:62259760-62259779 None:intergenic 45.0%
!! ACTACGAAGAAAAGCACCAC+TGG - chr3_3:62260031-62260050 None:intergenic 45.0%
ACTGTCGCCAATTTCGCATT+TGG - chr3_3:62260368-62260387 None:intergenic 45.0%
ATGCGAAATTGGCGACAGTT+TGG + chr3_3:62260369-62260388 Msa0463030:CDS 45.0%
ATTCTTGTCAAAGGCGACAC+CGG + chr3_3:62260558-62260577 Msa0463030:CDS 45.0%
!! GATTAGGTTGATGGTGTGCA+TGG + chr3_3:62260591-62260610 Msa0463030:CDS 45.0%
! TCCACACCTAGAATCGACTT+CGG + chr3_3:62260927-62260946 Msa0463030:intron 45.0%
! GTTATCCCGAAGTCGATTCT+AGG - chr3_3:62260936-62260955 None:intergenic 45.0%
TACCAACTGAGCTAAGCTCA+TGG - chr3_3:62261259-62261278 None:intergenic 45.0%
ATGAGCTTAGCTCAGTTGGT+AGG + chr3_3:62261258-62261277 Msa0463030:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+GGG + chr3_3:62261259-62261278 Msa0463030:intron 45.0%
! GCATTTTATATGCAGGGGTC+GGG + chr3_3:62261287-62261306 Msa0463030:intron 45.0%
! CATTTTATATGCAGGGGTCG+GGG + chr3_3:62261288-62261307 Msa0463030:intron 45.0%
!! GCAGAAGTGAGAGTGTTTCA+AGG - chr3_3:62261520-62261539 None:intergenic 45.0%
AATCCCTGAGCTTCAAGACA+TGG + chr3_3:62261560-62261579 Msa0463030:CDS 45.0%
ATCCCTGAGCTTCAAGACAT+GGG + chr3_3:62261561-62261580 Msa0463030:CDS 45.0%
GTTGCATTTGACCCTCTTGA+TGG + chr3_3:62261714-62261733 Msa0463030:CDS 45.0%
TTCACAGTAGGCACCATCTT+TGG + chr3_3:62261759-62261778 Msa0463030:CDS 45.0%
! TAGGCACCATCTTTGGTGTA+TGG + chr3_3:62261766-62261785 Msa0463030:CDS 45.0%
!! TGGCCTGGTGATAAGTTGAT+TGG + chr3_3:62261786-62261805 Msa0463030:CDS 45.0%
! AGATCAAGTTGCTGCAGCTA+TGG + chr3_3:62261821-62261840 Msa0463030:CDS 45.0%
! GATCAAGTTGCTGCAGCTAT+GGG + chr3_3:62261822-62261841 Msa0463030:CDS 45.0%
! GTAGAAATTCATGAGTGCCG+GGG - chr3_3:62261893-62261912 None:intergenic 45.0%
GAAGGAAAACTATTCTCCCC+TGG + chr3_3:62262127-62262146 Msa0463030:CDS 45.0%
ACGTGGCTCTCAAATTTCCA+GGG - chr3_3:62262147-62262166 None:intergenic 45.0%
AACGTGGCTCTCAAATTTCC+AGG - chr3_3:62262148-62262167 None:intergenic 45.0%
TACACATTGAGATACACCGG+AGG + chr3_3:62262307-62262326 Msa0463030:CDS 45.0%
ATTGAGATACACCGGAGGAA+TGG + chr3_3:62262312-62262331 Msa0463030:CDS 45.0%
CAACAGTCTCAACTTGGCTT+TGG - chr3_3:62262562-62262581 None:intergenic 45.0%
! TTGTTTGAGGTAGCTCCACT+AGG + chr3_3:62262579-62262598 Msa0463030:CDS 45.0%
GTATGGTTCATCAAGGCTCA+AGG + chr3_3:62262740-62262759 Msa0463030:CDS 45.0%
! TAGGAAGAGATATGGTGGGG+GGG - chr3_3:62259759-62259778 None:intergenic 50.0%
CATACCCTGAAGGCAGAAGA+GGG - chr3_3:62260087-62260106 None:intergenic 50.0%
TCAAAGGCGACACCGGATAA+GGG + chr3_3:62260565-62260584 Msa0463030:CDS 50.0%
CACCGGATAAGGGACTGATT+AGG + chr3_3:62260575-62260594 Msa0463030:CDS 50.0%
GTGAAGACAGCTTCTTGTGG+TGG + chr3_3:62260643-62260662 Msa0463030:CDS 50.0%
GCAACTTGCAGTGGATATGC+TGG + chr3_3:62260696-62260715 Msa0463030:CDS 50.0%
! CCACACCTAGAATCGACTTC+GGG + chr3_3:62260928-62260947 Msa0463030:intron 50.0%
CTCCATGAGCTTAGCTCAGT+TGG + chr3_3:62261254-62261273 Msa0463030:intron 50.0%
TGTGGAGAAGTGGAGAGAAG+TGG - chr3_3:62261331-62261350 None:intergenic 50.0%
! TTGTGTGAGCTCTAGCCACT+AGG + chr3_3:62261357-62261376 Msa0463030:intron 50.0%
GCTCACACAAAGTAGCCTAG+TGG - chr3_3:62261375-62261394 None:intergenic 50.0%
! TTGTGTGAGCTCTAGCCACT+AGG + chr3_3:62261357-62261376 Msa0463030:intron 50.0%
GCTCACACAAAGTAGCCTAG+TGG - chr3_3:62261375-62261394 None:intergenic 50.0%
! TTGTGTGAGCTCTAGCCACT+AGG + chr3_3:62261357-62261376 Msa0463030:intron 50.0%
CTCCCATGTCTTGAAGCTCA+GGG - chr3_3:62261566-62261585 None:intergenic 50.0%
! ACCATCTTTGGTGTATGGCC+TGG + chr3_3:62261771-62261790 Msa0463030:CDS 50.0%
ACCAGGCCATACACCAAAGA+TGG - chr3_3:62261775-62261794 None:intergenic 50.0%
! GCTGCAGCTATGGGAGTTTT+AGG + chr3_3:62261831-62261850 Msa0463030:CDS 50.0%
CTTGCACTTAAGGACTTCCC+CGG + chr3_3:62261873-62261892 Msa0463030:CDS 50.0%
CGTGGCTCTCAAATTTCCAG+GGG - chr3_3:62262146-62262165 None:intergenic 50.0%
! AATGGTGCCGGATGTTAACC+AGG + chr3_3:62262330-62262349 Msa0463030:CDS 50.0%
!! CTCAACTTGGCTTTGGCAGT+TGG - chr3_3:62262555-62262574 None:intergenic 50.0%
GCTTAAGCACTTGCTCCAAC+AGG - chr3_3:62262774-62262793 None:intergenic 50.0%
!! GATGGAGGGTAGGGAGTGTT+TGG - chr3_3:62260061-62260080 None:intergenic 55.0%
! AGAGGGAGTGATGGAGGGTA+GGG - chr3_3:62260070-62260089 None:intergenic 55.0%
! AAGAGGGAGTGATGGAGGGT+AGG - chr3_3:62260071-62260090 None:intergenic 55.0%
! GCAGAAGAGGGAGTGATGGA+GGG - chr3_3:62260075-62260094 None:intergenic 55.0%
GAAGGCAGAAGAGGGAGTGA+TGG - chr3_3:62260079-62260098 None:intergenic 55.0%
TCACTCCCTCTTCTGCCTTC+AGG + chr3_3:62260079-62260098 Msa0463030:CDS 55.0%
CACTCCCTCTTCTGCCTTCA+GGG + chr3_3:62260080-62260099 Msa0463030:CDS 55.0%
GCATACCCTGAAGGCAGAAG+AGG - chr3_3:62260088-62260107 None:intergenic 55.0%
GTCAAAGGCGACACCGGATA+AGG + chr3_3:62260564-62260583 Msa0463030:CDS 55.0%
TGGGGATGAGCAACTTGCAG+TGG + chr3_3:62260687-62260706 Msa0463030:CDS 55.0%
! CCCGAAGTCGATTCTAGGTG+TGG - chr3_3:62260931-62260950 None:intergenic 55.0%
! TGGAGAGAAGTGGAGTGTCC+GGG - chr3_3:62261321-62261340 None:intergenic 55.0%
! GTGGAGAGAAGTGGAGTGTC+CGG - chr3_3:62261322-62261341 None:intergenic 55.0%
CCTCCCATGTCTTGAAGCTC+AGG - chr3_3:62261567-62261586 None:intergenic 55.0%
CCTGAGCTTCAAGACATGGG+AGG + chr3_3:62261564-62261583 Msa0463030:CDS 55.0%
GACATGGGAGGTCCAGTTGA+TGG + chr3_3:62261576-62261595 Msa0463030:CDS 55.0%
ATACACCGGAGGAATGGTGC+CGG + chr3_3:62262318-62262337 Msa0463030:CDS 55.0%
AACATCCGGCACCATTCCTC+CGG - chr3_3:62262326-62262345 None:intergenic 55.0%
GCTGGAGGTTACAGCAGTGA+TGG + chr3_3:62262618-62262637 Msa0463030:CDS 55.0%
GGTTCATCAAGGCTCAAGGG+TGG + chr3_3:62262744-62262763 Msa0463030:CDS 55.0%
CTCAAGGGTGGTGTACCTGT+TGG + chr3_3:62262756-62262775 Msa0463030:CDS 55.0%
GGCAGAAGAGGGAGTGATGG+AGG - chr3_3:62260076-62260095 None:intergenic 60.0%
! GGAGAGAAGTGGAGTGTCCG+GGG - chr3_3:62261320-62261339 None:intergenic 60.0%
AGGGGTCGGGGTTCGAACCC+CGG + chr3_3:62261300-62261319 Msa0463030:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 62259707 62263137 62259707 ID=Msa0463030;Name=Msa0463030
chr3_3 mRNA 62259707 62263137 62259707 ID=Msa0463030-mRNA-1;Parent=Msa0463030;Name=Msa0463030-mRNA-1;_AED=0.07;_eAED=0.07;_QI=296|1|1|1|1|1|8|346|387
chr3_3 exon 62259707 62260101 62259707 ID=Msa0463030-mRNA-1:exon:13258;Parent=Msa0463030-mRNA-1
chr3_3 exon 62260271 62260390 62260271 ID=Msa0463030-mRNA-1:exon:13259;Parent=Msa0463030-mRNA-1
chr3_3 exon 62260553 62260738 62260553 ID=Msa0463030-mRNA-1:exon:13260;Parent=Msa0463030-mRNA-1
chr3_3 exon 62261516 62261597 62261516 ID=Msa0463030-mRNA-1:exon:13261;Parent=Msa0463030-mRNA-1
chr3_3 exon 62261703 62261924 62261703 ID=Msa0463030-mRNA-1:exon:13262;Parent=Msa0463030-mRNA-1
chr3_3 exon 62262089 62262189 62262089 ID=Msa0463030-mRNA-1:exon:13263;Parent=Msa0463030-mRNA-1
chr3_3 exon 62262280 62262351 62262280 ID=Msa0463030-mRNA-1:exon:13264;Parent=Msa0463030-mRNA-1
chr3_3 exon 62262510 62263137 62262510 ID=Msa0463030-mRNA-1:exon:13265;Parent=Msa0463030-mRNA-1
chr3_3 five_prime_UTR 62259707 62260002 62259707 ID=Msa0463030-mRNA-1:five_prime_utr;Parent=Msa0463030-mRNA-1
chr3_3 CDS 62260003 62260101 62260003 ID=Msa0463030-mRNA-1:cds;Parent=Msa0463030-mRNA-1
chr3_3 CDS 62260271 62260390 62260271 ID=Msa0463030-mRNA-1:cds;Parent=Msa0463030-mRNA-1
chr3_3 CDS 62260553 62260738 62260553 ID=Msa0463030-mRNA-1:cds;Parent=Msa0463030-mRNA-1
chr3_3 CDS 62261516 62261597 62261516 ID=Msa0463030-mRNA-1:cds;Parent=Msa0463030-mRNA-1
chr3_3 CDS 62261703 62261924 62261703 ID=Msa0463030-mRNA-1:cds;Parent=Msa0463030-mRNA-1
chr3_3 CDS 62262089 62262189 62262089 ID=Msa0463030-mRNA-1:cds;Parent=Msa0463030-mRNA-1
chr3_3 CDS 62262280 62262351 62262280 ID=Msa0463030-mRNA-1:cds;Parent=Msa0463030-mRNA-1
chr3_3 CDS 62262510 62262791 62262510 ID=Msa0463030-mRNA-1:cds;Parent=Msa0463030-mRNA-1
chr3_3 three_prime_UTR 62262792 62263137 62262792 ID=Msa0463030-mRNA-1:three_prime_utr;Parent=Msa0463030-mRNA-1
Gene Sequence

>Msa0463030

ATGGAAACTAGTATAGCATGTTACTCCAGTGGTGCTTTTCTTCGTAGTGTTTCTGCCAAACACTCCCTACCCTCCATCACTCCCTCTTCTGCCTTCAGGAGTTTGAAATCAAGCTCTTTATTTGGAGAATCTCTTAGAGTGTCATCTAAATCAACACTTAAGTTTTCAAGGGCAAAGAGTACTTCAGTCATAACCAAATGCGAAATTGGCGACAGTTTGGAAGAATTCTTGTCAAAGGCGACACCGGATAAGGGACTGATTAGGTTGATGGTGTGCATGGGAGAAGCATTGAGAACAATTTCTTTCAAAGTGAAGACAGCTTCTTGTGGTGGAACACAATGTGTTAACTCTTTTGGGGATGAGCAACTTGCAGTGGATATGCTGGCTAACAATCTTCTTTTTGAGGCCTTGAAACACTCTCACTTCTGCAAGTACGCTTGCTCAGAAGAAATCCCTGAGCTTCAAGACATGGGAGGTCCAGTTGATGGAGGATTTAGTGTTGCATTTGACCCTCTTGATGGTTCAAGCATAGTAGACACAAATTTCACAGTAGGCACCATCTTTGGTGTATGGCCTGGTGATAAGTTGATTGGAGTAACAGGAAGAGATCAAGTTGCTGCAGCTATGGGAGTTTTAGGTCCTAGAACCACTTATGTACTTGCACTTAAGGACTTCCCCGGCACTCATGAATTTCTACTTCTTGATGAAGGAAAATGGCAGCATGTCAAAGAGACTCATGAAATTGGTGAAGGAAAACTATTCTCCCCTGGAAATTTGAGAGCCACGTTTGACAATGCAGATTATGCTAAGTTGGTCGATTACTATGTTAGAGAAAAATACACATTGAGATACACCGGAGGAATGGTGCCGGATGTTAACCAGATTATTGTAAAAGAAAAGGGAATATTTACAAATGTGACATCACCAACTGCCAAAGCCAAGTTGAGACTGTTGTTTGAGGTAGCTCCACTAGGACTCTTGATTGAAAATGCTGGAGGTTACAGCAGTGATGGCCATAAATCTGTGCTAGACAAGGTCATTGAGAACATTGATGATAGAACTCAAGTTGCTTATGGATCAAAGAATGAGGTCATTAGGTTTGAAGAAACATTGTATGGTTCATCAAGGCTCAAGGGTGGTGTACCTGTTGGAGCAAGTGCTTAA

Protein sequence

>Msa0463030

METSIACYSSGAFLRSVSAKHSLPSITPSSAFRSLKSSSLFGESLRVSSKSTLKFSRAKSTSVITKCEIGDSLEEFLSKATPDKGLIRLMVCMGEALRTISFKVKTASCGGTQCVNSFGDEQLAVDMLANNLLFEALKHSHFCKYACSEEIPELQDMGGPVDGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGDKLIGVTGRDQVAAAMGVLGPRTTYVLALKDFPGTHEFLLLDEGKWQHVKETHEIGEGKLFSPGNLRATFDNADYAKLVDYYVREKYTLRYTGGMVPDVNQIIVKEKGIFTNVTSPTAKAKLRLLFEVAPLGLLIENAGGYSSDGHKSVLDKVIENIDDRTQVAYGSKNEVIRFEETLYGSSRLKGGVPVGASA*