AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1440140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1440140 MtrunA17_Chr6g0450641 98.489 331 3 2 1 329 1 331 0.0 656
Msa1440140 MtrunA17_Chr5g0413551 63.566 258 90 1 72 329 3 256 4.42e-122 351
Msa1440140 MtrunA17_Chr8g0365441 64.981 257 85 3 72 328 3 254 1.02e-119 345
Msa1440140 MtrunA17_Chr3g0117661 56.667 240 101 1 78 317 9 245 4.51e-96 285
Msa1440140 MtrunA17_Chr3g0117691 56.250 240 102 1 78 317 9 245 1.02e-94 281
Msa1440140 MtrunA17_Chr2g0279581 51.777 197 92 2 125 321 89 282 4.07e-68 215
Msa1440140 MtrunA17_Chr5g0427341 46.701 197 103 2 125 321 94 288 1.99e-58 190
Msa1440140 MtrunA17_Chr3g0117671 68.182 44 14 0 156 199 1 44 1.13e-16 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1440140 AT3G01500.3 68.047 338 97 4 1 329 1 336 5.12e-150 425
Msa1440140 AT3G01500.2 68.047 338 97 4 1 329 1 336 6.83e-150 425
Msa1440140 AT3G01500.4 74.615 260 64 2 71 329 1 259 2.18e-139 395
Msa1440140 AT3G01500.1 74.615 260 64 2 71 329 1 259 4.28e-139 395
Msa1440140 AT5G14740.9 70.000 260 76 2 71 329 1 259 7.00e-132 376
Msa1440140 AT5G14740.8 70.000 260 76 2 71 329 1 259 7.00e-132 376
Msa1440140 AT5G14740.7 70.000 260 76 2 71 329 1 259 7.00e-132 376
Msa1440140 AT5G14740.2 70.000 260 76 2 71 329 1 259 7.00e-132 376
Msa1440140 AT5G14740.6 70.000 260 76 2 71 329 1 259 7.00e-132 376
Msa1440140 AT5G14740.1 69.202 263 80 1 67 329 70 331 8.78e-132 379
Msa1440140 AT5G14740.4 68.821 263 80 2 67 329 70 330 2.49e-129 372
Msa1440140 AT5G14740.3 68.061 263 82 2 67 329 70 330 3.98e-128 369
Msa1440140 AT1G70410.3 58.824 255 100 2 75 328 6 256 2.46e-109 319
Msa1440140 AT1G70410.1 58.824 255 100 2 75 328 6 256 2.46e-109 319
Msa1440140 AT1G70410.2 57.795 263 105 3 68 328 20 278 3.30e-109 319
Msa1440140 AT1G23730.2 53.488 258 115 2 73 329 4 257 2.73e-100 296
Msa1440140 AT1G23730.1 53.488 258 115 2 73 329 4 257 2.73e-100 296
Msa1440140 AT5G14740.5 66.986 209 68 1 67 275 70 277 3.29e-98 293
Msa1440140 AT4G33580.3 44.118 238 130 3 87 324 48 282 1.89e-62 201
Msa1440140 AT4G33580.1 44.118 238 130 3 87 324 48 282 1.89e-62 201
Msa1440140 AT4G33580.2 43.933 239 130 4 87 324 48 283 1.38e-61 199
Msa1440140 AT1G58180.7 42.132 197 113 1 123 319 26 221 4.13e-51 169
Msa1440140 AT1G58180.3 42.132 197 113 1 123 319 26 221 4.13e-51 169
Msa1440140 AT1G58180.6 42.132 197 113 1 123 319 26 221 4.13e-51 169
Msa1440140 AT1G58180.2 42.132 197 113 1 123 319 77 272 1.46e-50 170
Msa1440140 AT1G58180.4 42.132 197 113 1 123 319 77 272 1.46e-50 170
Msa1440140 AT1G58180.1 41.538 195 98 2 123 317 77 255 1.38e-46 158
Msa1440140 AT1G58180.5 45.098 153 83 1 123 275 77 228 5.12e-39 139

Find 112 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTTTGGTTACATTAAAA+TGG 0.130582 tig0028961:-49462 Msa1440140:five_prime_UTR
TAGCAAACTGGCAGATTATT+TGG 0.156433 tig0028961:-44660 Msa1440140:three_prime_UTR
GAGCTTTGGGGACTTGAATT+TGG 0.157327 tig0028961:-45265 Msa1440140:CDS
AGAGAGACTAAAGCCGTTTA+TGG 0.187138 tig0028961:+49355 None:intergenic
GCCTTCACCTTTGCCTTTGC+AGG 0.194024 tig0028961:+45965 None:intergenic
CAGTGCTTGTGGTGGTATTA+AGG 0.198916 tig0028961:-46490 Msa1440140:CDS
TTTAGTGTATATACCAAAAC+TGG 0.244721 tig0028961:+49176 None:intergenic
TCCTATCATCACCCCAGTTT+TGG 0.256292 tig0028961:-49189 Msa1440140:intron
TCTGCCAGTTTGCTAGCTTA+TGG 0.285698 tig0028961:+44668 None:intergenic
ATTGAGGAGTGGGTCAAAAT+TGG 0.295969 tig0028961:-45992 Msa1440140:CDS
ATAATATGATGAAAGTTTAT+AGG 0.317340 tig0028961:+44870 None:intergenic
AACAAAACATTGGCACTAAA+AGG 0.320612 tig0028961:-45319 Msa1440140:CDS
AGCTATAATCTCATGCTTAA+AGG 0.323897 tig0028961:-44915 Msa1440140:three_prime_UTR
TATCATCTTAAATAAGAGTT+TGG 0.333284 tig0028961:-44787 Msa1440140:three_prime_UTR
ACCTTTGGTTACATTAAAAT+GGG 0.337350 tig0028961:-49461 Msa1440140:five_prime_UTR
CTTATGGAGAACAAGGAAAA+TGG 0.339322 tig0028961:+44684 None:intergenic
AAACATGGAGATGCACCTTT+TGG 0.343398 tig0028961:-45941 Msa1440140:CDS
CCATAACCTTAAGGTCCCTT+TGG 0.355894 tig0028961:+49576 None:intergenic
CCAAAGGGACCTTAAGGTTA+TGG 0.376245 tig0028961:-49576 Msa1440140:five_prime_UTR
AGCAAACTGGCAGATTATTT+GGG 0.383349 tig0028961:-44659 Msa1440140:three_prime_UTR
AGTGCTTGTGGTGGTATTAA+GGG 0.402709 tig0028961:-46489 Msa1440140:CDS
ACCAATCCCTCTCTCACAAA+TGG 0.406160 tig0028961:+45343 None:intergenic
AGGGAAGTTAGAAGTGGAAG+AGG 0.416201 tig0028961:+49253 None:intergenic
CAGGCAAAATATGCTGGAAC+TGG 0.423684 tig0028961:-46683 Msa1440140:CDS
AAGATGTGGTCATTGATATA+TGG 0.428062 tig0028961:+45210 None:intergenic
TTTAGATGAGGTTTGAATGT+TGG 0.429780 tig0028961:+49532 None:intergenic
TTAAGAGATGCAGAAACAAT+AGG 0.430244 tig0028961:+49287 None:intergenic
ATGTCTACCTCTTCCATAAA+CGG 0.431358 tig0028961:-49368 Msa1440140:CDS
CCCATTTGTGAGAGAGGGAT+TGG 0.434089 tig0028961:-45344 Msa1440140:CDS
TTGGAACAAACCTGGTCATA+TGG 0.439425 tig0028961:+46958 None:intergenic
GGCAATCCAAAGGGACCTTA+AGG 0.446488 tig0028961:-49582 Msa1440140:five_prime_UTR
TGATGTGTTCCATGACCAAT+TGG 0.448562 tig0028961:+49433 None:intergenic
CTCTCTGAGGCTTCAGATGT+TGG 0.455326 tig0028961:+47651 None:intergenic
GAAGCTGTGAATGTTTCTCT+TGG 0.456813 tig0028961:-45382 Msa1440140:CDS
GTGTCCAACATTGTGGTCAT+TGG 0.457818 tig0028961:-46516 Msa1440140:CDS
CCACAAAAGCTTCACCTGGC+TGG 0.464147 tig0028961:+47007 None:intergenic
GTGGAGTAGGCTCCATCAAA+TGG 0.464977 tig0028961:+46453 None:intergenic
GCCTCAGAGAGGATCAAAAC+TGG 0.471392 tig0028961:-47639 Msa1440140:CDS
ACCAAAACTGGGGTGATGAT+AGG 0.472900 tig0028961:+49188 None:intergenic
AAGAGAGAAGAAATGGGAAA+GGG 0.478534 tig0028961:-48069 Msa1440140:CDS
AGAGAATGACCATAACCTTA+AGG 0.482720 tig0028961:+49567 None:intergenic
TTCTCCATAAGCTAGCAAAC+TGG 0.482838 tig0028961:-44672 Msa1440140:three_prime_UTR
AGCAAGAATCCAGCTTTGTA+TGG 0.484367 tig0028961:-47485 Msa1440140:CDS
ACTAAAGCCGTTTATGGAAG+AGG 0.493880 tig0028961:+49361 None:intergenic
CAAAATTGGTTTACCTGCAA+AGG 0.494116 tig0028961:-45978 Msa1440140:CDS
TCACAAATGGGTAGGTAAGA+AGG 0.496271 tig0028961:+45356 None:intergenic
TTAAAATGGGGATACCCAAT+TGG 0.496847 tig0028961:-49448 Msa1440140:five_prime_UTR
ACCTACCCATTTGTGAGAGA+GGG 0.496970 tig0028961:-45349 Msa1440140:CDS
TTGAGAAAACATATAACAAA+AGG 0.498303 tig0028961:-49621 Msa1440140:five_prime_UTR
TAGGGAGAAGACTGAATTGA+AGG 0.501912 tig0028961:-47742 Msa1440140:CDS
ATTTCTCTTTCTTGAAGTGA+AGG 0.503283 tig0028961:+47613 None:intergenic
GCTAGTTCACCATACAAAGC+TGG 0.504395 tig0028961:+47476 None:intergenic
CCAATCCCTCTCTCACAAAT+GGG 0.504979 tig0028961:+45344 None:intergenic
TTGTAACAGGCAAAATATGC+TGG 0.509487 tig0028961:-46689 Msa1440140:intron
GGTGATGATAGGAGAAGAAG+AGG 0.514997 tig0028961:+49199 None:intergenic
TAAGAGAGAAGAAATGGGAA+AGG 0.517223 tig0028961:-48070 Msa1440140:intron
GTGCTTGTGGTGGTATTAAG+GGG 0.524502 tig0028961:-46488 Msa1440140:CDS
CATGTGCTAGATTTCCAGCC+AGG 0.532787 tig0028961:-47021 Msa1440140:CDS
ATATATGGTTGATGTTCATA+CGG 0.533962 tig0028961:+45225 None:intergenic
TGGAAATCTAGCACATGAGA+TGG 0.535400 tig0028961:+47027 None:intergenic
CTGACCACAAAAGCTTCACC+TGG 0.540212 tig0028961:+47003 None:intergenic
TATATGAGACACTATGAACT+TGG 0.542115 tig0028961:-44839 Msa1440140:three_prime_UTR
GTCATTGGACACAGTGCTTG+TGG 0.548047 tig0028961:-46501 Msa1440140:CDS
ACCTGCAAAGGCAAAGGTGA+AGG 0.548551 tig0028961:-45966 Msa1440140:CDS
TGGTTTACCTGCAAAGGCAA+AGG 0.549043 tig0028961:-45972 Msa1440140:CDS
TGAAAACGAAAGTTAAGCTA+AGG 0.549996 tig0028961:+49490 None:intergenic
AAGAGAAGGGAAGTTAGAAG+TGG 0.550503 tig0028961:+49247 None:intergenic
GTATGCTGTTCTTCATCTCA+AGG 0.550648 tig0028961:-46648 Msa1440140:intron
TACCTACCCATTTGTGAGAG+AGG 0.551671 tig0028961:-45350 Msa1440140:CDS
CAGTGATTTCATTGAGGAGT+GGG 0.552604 tig0028961:-46002 Msa1440140:CDS
CATGGTTCCACCATATGACC+AGG 0.558972 tig0028961:-46968 Msa1440140:intron
GCAAAGGTGAAGGCAAAACA+TGG 0.559880 tig0028961:-45956 Msa1440140:CDS
CAAGAACAAGGCAATCCAAA+GGG 0.560918 tig0028961:-49591 Msa1440140:five_prime_UTR
TGGGGATACCCAATTGGTCA+TGG 0.564321 tig0028961:-49442 Msa1440140:five_prime_UTR
ATACGGAGAAAGTTGAAGAA+AGG 0.569824 tig0028961:+45242 None:intergenic
GGAACAACAGCATCAGCTGA+TGG 0.577121 tig0028961:-47678 Msa1440140:CDS
GTTTGTCTTGAATAAGAGAA+GGG 0.577564 tig0028961:+49234 None:intergenic
TTGCTAGCTTATGGAGAACA+AGG 0.584211 tig0028961:+44677 None:intergenic
GGTCAGAAATGTTGCTAACA+TGG 0.584570 tig0028961:-46986 Msa1440140:CDS
GGAAATCTAGCACATGAGAT+GGG 0.585270 tig0028961:+47028 None:intergenic
CCTATAGGTGTCCAACATTG+TGG 0.589585 tig0028961:-46523 Msa1440140:intron
GGTTTGTCTTGAATAAGAGA+AGG 0.590039 tig0028961:+49233 None:intergenic
GCAGTGATTTCATTGAGGAG+TGG 0.590746 tig0028961:-46003 Msa1440140:intron
ATGAAGAACAGCATACTCAA+TGG 0.592490 tig0028961:+46655 None:intergenic
ATAAGATGATACATTTGTGA+AGG 0.594046 tig0028961:-49697 Msa1440140:intron
ATGTGGCCACGGTTCTACAT+TGG 0.595438 tig0028961:-44939 Msa1440140:three_prime_UTR
CCTTTGGTTACATTAAAATG+GGG 0.596627 tig0028961:-49460 Msa1440140:five_prime_UTR
TGTGTGCATAGCTCTCCAAA+AGG 0.602700 tig0028961:+45926 None:intergenic
GGATACTATGACTTTGTGAA+AGG 0.603419 tig0028961:-45295 Msa1440140:CDS
GATGTGTTCCATGACCAATT+GGG 0.610561 tig0028961:+49434 None:intergenic
GAGCAAATTACAGCTCAGCT+AGG 0.613484 tig0028961:-47699 Msa1440140:CDS
GTGTCCAATGACCACAATGT+TGG 0.616398 tig0028961:+46512 None:intergenic
GAACAAACCTGGTCATATGG+TGG 0.621340 tig0028961:+46961 None:intergenic
TTAGGTAAAAGATGTGGCCA+CGG 0.621466 tig0028961:-44950 Msa1440140:intron
GTCGTGTGTCTGCAATGAAG+AGG 0.622417 tig0028961:-44893 Msa1440140:three_prime_UTR
TTAGTGTATATACCAAAACT+GGG 0.627773 tig0028961:+49177 None:intergenic
GGGATTGGTGAACAAAACAT+TGG 0.629368 tig0028961:-45329 Msa1440140:CDS
ACAAGAACAAGGCAATCCAA+AGG 0.634465 tig0028961:-49592 Msa1440140:five_prime_UTR
GCTATGCACACACTGTGAGA+AGG 0.643279 tig0028961:-45915 Msa1440140:intron
ATACTTAGGTAATCAAGATG+TGG 0.649188 tig0028961:+45196 None:intergenic
AAAACATTGGCACTAAAAGG+AGG 0.653225 tig0028961:-45316 Msa1440140:CDS
ATAGTCATTGCATACCGGGG+GGG 0.655182 tig0028961:+47442 None:intergenic
TTGTATGGTGAACTAGCCAA+AGG 0.656155 tig0028961:-47470 Msa1440140:CDS
TCCCTCTCTCACAAATGGGT+AGG 0.656447 tig0028961:+45348 None:intergenic
ATTGGACACAGTGCTTGTGG+TGG 0.669101 tig0028961:-46498 Msa1440140:CDS
AATGGGAAAGGGCTATGATG+AGG 0.670505 tig0028961:-48058 Msa1440140:CDS
TGTGTGCAGTGATTTCATTG+AGG 0.680762 tig0028961:-46008 Msa1440140:intron
AAAGGTAAATGACAAGAACA+AGG 0.700282 tig0028961:-49603 Msa1440140:five_prime_UTR
CAACATCTGAAGCCTCAGAG+AGG 0.708925 tig0028961:-47650 Msa1440140:CDS
TGTTTGTTAGGTAAAAGATG+TGG 0.720567 tig0028961:-44956 Msa1440140:intron
TAGTGTATATACCAAAACTG+GGG 0.721851 tig0028961:+49178 None:intergenic
TAGCTTCCAATGTAGAACCG+TGG 0.724891 tig0028961:+44933 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTAATATATAGTTTTAATTT+TGG + tig0028961:45855-45874 None:intergenic 10.0%
!! CAAAATTAAAACTATATATT+AGG - tig0028961:45853-45872 Msa1440140:intron 10.0%
!! TAGTATAATATTTCAAATAT+AGG - tig0028961:46576-46595 Msa1440140:intron 10.0%
!! AGTATAATATTTCAAATATA+GGG - tig0028961:46577-46596 Msa1440140:intron 10.0%
!! AAAGATATAAGTAATTATAA+AGG + tig0028961:46781-46800 None:intergenic 10.0%
!!! AATTTTACTATTGAATATTT+TGG - tig0028961:48067-48086 Msa1440140:CDS 10.0%
!!! ATTTTACTATTGAATATTTT+GGG - tig0028961:48068-48087 Msa1440140:CDS 10.0%
!!! TATTAGTCTTAATTTTTTAT+AGG - tig0028961:48802-48821 Msa1440140:intron 10.0%
!! AAAGTAACATTATTATAATT+TGG + tig0028961:49286-49305 None:intergenic 10.0%
!!! AACTTTTTTAATAGAAGTTT+TGG + tig0028961:45021-45040 None:intergenic 15.0%
!!! AAGAAAAATTTAGAGTTAAA+TGG - tig0028961:45310-45329 Msa1440140:CDS 15.0%
!!! AAAAAATTTGGTTAGTTATA+TGG + tig0028961:45811-45830 None:intergenic 15.0%
!! AGTAAATAAATAGTACTATA+AGG + tig0028961:46069-46088 None:intergenic 15.0%
!! TATAGTACTATTTATTTACT+TGG - tig0028961:46069-46088 Msa1440140:intron 15.0%
!!! TAATGAAATTTTAGTCTTTA+GGG + tig0028961:46145-46164 None:intergenic 15.0%
!!! TTAATGAAATTTTAGTCTTT+AGG + tig0028961:46146-46165 None:intergenic 15.0%
!!! AAATAATGAAAAGTGATTTT+TGG + tig0028961:46186-46205 None:intergenic 15.0%
!!! ACTTTTCATTATTTCTTTTT+AGG - tig0028961:46192-46211 Msa1440140:intron 15.0%
!! ATTATTGACCAAATATAAAT+CGG - tig0028961:46992-47011 Msa1440140:CDS 15.0%
!! GTTAAAATCAAAATATTTGT+AGG + tig0028961:47085-47104 None:intergenic 15.0%
!!! AACATACATATATTTCATTT+TGG - tig0028961:47521-47540 Msa1440140:intron 15.0%
!! ATACAAATTATACTCAAAAA+AGG - tig0028961:47594-47613 Msa1440140:intron 15.0%
!! TGATTCTAATTATTAAATGT+TGG + tig0028961:48018-48037 None:intergenic 15.0%
!! ATAATATGATGAAAGTTTAT+AGG + tig0028961:49470-49489 None:intergenic 15.0%
!! TTGAGAAAACATATAACAAA+AGG - tig0028961:44667-44686 Msa1440140:three_prime_UTR 20.0%
!! TTGAGAAAACATATAACAAA+AGG - tig0028961:44667-44686 Msa1440140:three_prime_UTR 20.0%
!!! TTTTAATAGAAGTTTTGGTA+GGG + tig0028961:45016-45035 None:intergenic 20.0%
!!! TTTTTAATAGAAGTTTTGGT+AGG + tig0028961:45017-45036 None:intergenic 20.0%
!! ATATGTATATGTATATGTCA+TGG - tig0028961:45384-45403 Msa1440140:CDS 20.0%
!!! TAATTCCTTTTCTCAATAAT+AGG + tig0028961:45535-45554 None:intergenic 20.0%
!!! AAAAGTACAGATAGAATTTT+GGG + tig0028961:45633-45652 None:intergenic 20.0%
!! TCTTTAGCAATCTATTAAAT+TGG - tig0028961:45711-45730 Msa1440140:intron 20.0%
!! TTAAATTGGTAAGTTTAGTT+AGG - tig0028961:45725-45744 Msa1440140:intron 20.0%
!!! AGAAAAAAACTAGTTTTGAA+TGG + tig0028961:45975-45994 None:intergenic 20.0%
!!! ATATTTTAAGAGAGAAGAAA+TGG - tig0028961:46261-46280 Msa1440140:intron 20.0%
!!! TATTTTAAGAGAGAAGAAAT+GGG - tig0028961:46262-46281 Msa1440140:intron 20.0%
!! TATATAATTCTAATAGGAGA+AGG + tig0028961:46347-46366 None:intergenic 20.0%
!! AAATAATTATCATCGATGTT+AGG + tig0028961:46450-46469 None:intergenic 20.0%
!! AAAGAAAACAATGAAAAGTT+AGG + tig0028961:47248-47267 None:intergenic 20.0%
!! AAAAGATGCATTTGTATAAT+TGG + tig0028961:47401-47420 None:intergenic 20.0%
!!! ATATATGCTTAATTTGTAAC+AGG - tig0028961:47635-47654 Msa1440140:CDS 20.0%
!! TAGGAAGAAAAAAAATTGTT+GGG + tig0028961:47798-47817 None:intergenic 20.0%
!! ATAGGAAGAAAAAAAATTGT+TGG + tig0028961:47799-47818 None:intergenic 20.0%
!!! ACAATTTTTTTTCTTCCTAT+AGG - tig0028961:47799-47818 Msa1440140:intron 20.0%
!! TTGGTCTAAATAATTAAAAG+TGG + tig0028961:47999-48018 None:intergenic 20.0%
!! TTTATCAGTTGAAATTCAAA+TGG - tig0028961:48560-48579 Msa1440140:intron 20.0%
!! TGATAATATTGACATTTATC+TGG + tig0028961:48693-48712 None:intergenic 20.0%
!!! TTATAAAAAATAAAGGGTGT+TGG + tig0028961:48733-48752 None:intergenic 20.0%
!! TATAAAAGTAAATGCTCAAA+AGG - tig0028961:48748-48767 Msa1440140:intron 20.0%
!! ATAAAAGTAAATGCTCAAAA+GGG - tig0028961:48749-48768 Msa1440140:intron 20.0%
!! TTAAAATTTGAATTATGTGC+AGG - tig0028961:48933-48952 Msa1440140:intron 20.0%
!! AGCTCATAATTAATTAACAA+GGG + tig0028961:49198-49217 None:intergenic 20.0%
!! TAGCTCATAATTAATTAACA+AGG + tig0028961:49199-49218 None:intergenic 20.0%
!!! CCATCTACATTTATTTATTT+TGG + tig0028961:49226-49245 None:intergenic 20.0%
!! CCAAAATAAATAAATGTAGA+TGG - tig0028961:49223-49242 Msa1440140:CDS 20.0%
!! AACAAACAACAAAAATTTAG+TGG + tig0028961:49369-49388 None:intergenic 20.0%
!!! CTAAATTTTTGTTGTTTGTT+AGG - tig0028961:49369-49388 Msa1440140:CDS 20.0%
!! TATCATCTTAAATAAGAGTT+TGG - tig0028961:49550-49569 Msa1440140:five_prime_UTR 20.0%
!!! GAAGCAAAATTTTCAATATA+TGG - tig0028961:49583-49602 Msa1440140:five_prime_UTR 20.0%
! ATAAGATGATACATTTGTGA+AGG - tig0028961:44640-44659 Msa1440140:three_prime_UTR 25.0%
! TACCTTTGGTTACATTAAAA+TGG - tig0028961:44875-44894 Msa1440140:three_prime_UTR 25.0%
! ACCTTTGGTTACATTAAAAT+GGG - tig0028961:44876-44895 Msa1440140:three_prime_UTR 25.0%
!!! TTTAATAGAAGTTTTGGTAG+GGG + tig0028961:45015-45034 None:intergenic 25.0%
! TTAGTGTATATACCAAAACT+GGG + tig0028961:45163-45182 None:intergenic 25.0%
! TTTAGTGTATATACCAAAAC+TGG + tig0028961:45164-45183 None:intergenic 25.0%
! ATTCTTCTAATGTCATGTAT+TGG - tig0028961:45226-45245 Msa1440140:exon 25.0%
!!! ATATGTCATGGCATTTTTTA+AGG - tig0028961:45396-45415 Msa1440140:intron 25.0%
! AAGTACCTATTATTGAGAAA+AGG - tig0028961:45527-45546 Msa1440140:intron 25.0%
!!! CAAAAGTACAGATAGAATTT+TGG + tig0028961:45634-45653 None:intergenic 25.0%
!! CAAAATTCTATCTGTACTTT+TGG - tig0028961:45632-45651 Msa1440140:intron 25.0%
!!! TAGGTGAATTTGTTTTGTAT+AGG - tig0028961:45872-45891 Msa1440140:intron 25.0%
!!! AGGTGAATTTGTTTTGTATA+GGG - tig0028961:45873-45892 Msa1440140:intron 25.0%
! ACACATTACTATAGAAGAAA+AGG - tig0028961:45948-45967 Msa1440140:CDS 25.0%
!!! TATACTTAATTTTTGGTGTG+TGG + tig0028961:46019-46038 None:intergenic 25.0%
!! GACATGGTATACTTAATTTT+TGG + tig0028961:46026-46045 None:intergenic 25.0%
! TAGGGTACATATGAAAAATA+TGG + tig0028961:46127-46146 None:intergenic 25.0%
!! AGATTTACCTCAACAATTTT+TGG + tig0028961:46318-46337 None:intergenic 25.0%
! AATAAATAGTCATTGCATAC+CGG + tig0028961:46903-46922 None:intergenic 25.0%
! ATATTTGGTCAATAATTTCG+AGG + tig0028961:46988-47007 None:intergenic 25.0%
!! TTTAGAGACCGATTTATATT+TGG + tig0028961:47003-47022 None:intergenic 25.0%
! ATATAAATCGGTCTCTAAAT+CGG - tig0028961:47004-47023 Msa1440140:CDS 25.0%
! TCCAATCAAATAAAATCTCA+TGG - tig0028961:47057-47076 Msa1440140:CDS 25.0%
!!! ACCATGAGATTTTATTTGAT+TGG + tig0028961:47061-47080 None:intergenic 25.0%
! TGAAAACCAATATGATGTTA+TGG - tig0028961:47115-47134 Msa1440140:intron 25.0%
!! TGTTTTCTTTTTCCAGTTTA+TGG - tig0028961:47258-47277 Msa1440140:intron 25.0%
!!! CATCTTTTTTGACTTGTATA+TGG - tig0028961:47413-47432 Msa1440140:intron 25.0%
! ACTTCAGATTGAATATATGT+CGG + tig0028961:47550-47569 None:intergenic 25.0%
!! ATATATTCAATCTGAAGTGT+CGG - tig0028961:47552-47571 Msa1440140:intron 25.0%
! GAAAAAAAAAAAGACTTACG+TGG + tig0028961:47906-47925 None:intergenic 25.0%
! TCTACTTATACTTAGATTGA+TGG + tig0028961:48218-48237 None:intergenic 25.0%
! GTGAACTATAAGACAAATAT+TGG + tig0028961:48501-48520 None:intergenic 25.0%
!! ATATATGGTTGATGTTCATA+CGG + tig0028961:49115-49134 None:intergenic 25.0%
!!! ACATATAGTACATTTTAGAG+AGG + tig0028961:49170-49189 None:intergenic 25.0%
!! AGCTTTGTATAAATGATTGA+TGG + tig0028961:49263-49282 None:intergenic 25.0%
!! TGAGAGAAAAGTGTAATTTA+TGG - tig0028961:49330-49349 Msa1440140:CDS 25.0%
! AGAAAAAAGAATACTTTCGT+AGG + tig0028961:49625-49644 None:intergenic 25.0%
GTAAGATGATACATTTGTGA+AGG - tig0028961:44689-44708 Msa1440140:three_prime_UTR 30.0%
AAAGGTAAATGACAAGAACA+AGG - tig0028961:44734-44753 Msa1440140:three_prime_UTR 30.0%
TTTAGATGAGGTTTGAATGT+TGG + tig0028961:44808-44827 None:intergenic 30.0%
CAAACCTCATCTAAAAAGAT+AGG - tig0028961:44813-44832 Msa1440140:three_prime_UTR 30.0%
! CATTCCTATCTTTTTAGATG+AGG + tig0028961:44820-44839 None:intergenic 30.0%
TGAAAACGAAAGTTAAGCTA+AGG + tig0028961:44850-44869 None:intergenic 30.0%
! TCGTTTTCATTATCTACCTT+TGG - tig0028961:44861-44880 Msa1440140:three_prime_UTR 30.0%
CCTTTGGTTACATTAAAATG+GGG - tig0028961:44877-44896 Msa1440140:three_prime_UTR 30.0%
TTAAGAGATGCAGAAACAAT+AGG + tig0028961:45053-45072 None:intergenic 30.0%
GTTTGTCTTGAATAAGAGAA+GGG + tig0028961:45106-45125 None:intergenic 30.0%
TAGTGTATATACCAAAACTG+GGG + tig0028961:45162-45181 None:intergenic 30.0%
ACACTAAAACTAATGCACTT+TGG - tig0028961:45176-45195 Msa1440140:intron 30.0%
TGTTTGATTCTTCGATAAAG+TGG - tig0028961:45350-45369 Msa1440140:CDS 30.0%
GTTTGATTCTTCGATAAAGT+GGG - tig0028961:45351-45370 Msa1440140:CDS 30.0%
TGACATAATAGTGAGTCTAT+TGG - tig0028961:45439-45458 Msa1440140:intron 30.0%
AAGACAAAGATTTGCCATTA+GGG + tig0028961:45489-45508 None:intergenic 30.0%
AAAGACAAAGATTTGCCATT+AGG + tig0028961:45490-45509 None:intergenic 30.0%
GGTACTTAGCTATATACATT+TGG + tig0028961:45514-45533 None:intergenic 30.0%
! TCTAAAGTATAGTATTCACG+TGG - tig0028961:45672-45691 Msa1440140:intron 30.0%
GTAAGTTTAGTTAGGTTTGA+GGG - tig0028961:45733-45752 Msa1440140:intron 30.0%
!!! GGTGAATTTGTTTTGTATAG+GGG - tig0028961:45874-45893 Msa1440140:intron 30.0%
AGAAAAGTTCAAATTGGACA+TGG + tig0028961:46042-46061 None:intergenic 30.0%
GGTCTAAGAAAAGTTCAAAT+TGG + tig0028961:46048-46067 None:intergenic 30.0%
TGACAATTACGAACAATTGA+CGG + tig0028961:46413-46432 None:intergenic 30.0%
! TCTAAAGTCACGTATATGAT+TGG - tig0028961:46469-46488 Msa1440140:CDS 30.0%
ATTTCTCTTTCTTGAAGTGA+AGG + tig0028961:46727-46746 None:intergenic 30.0%
ATAAATAGTCATTGCATACC+GGG + tig0028961:46902-46921 None:intergenic 30.0%
CTCTAACCATAACATCATAT+TGG + tig0028961:47124-47143 None:intergenic 30.0%
! TGGTTAGAGTGAAATTTGTT+TGG - tig0028961:47135-47154 Msa1440140:intron 30.0%
TTGTATAATTGGAACAAACC+TGG + tig0028961:47390-47409 None:intergenic 30.0%
ATACTGATAAATGTACACTG+CGG - tig0028961:47465-47484 Msa1440140:CDS 30.0%
! CTTTTGTCTTTTCCATTTGA+TGG - tig0028961:47872-47891 Msa1440140:intron 30.0%
AGAAAAGTTAGTGTAGGTAA+AGG + tig0028961:47928-47947 None:intergenic 30.0%
TTAGTGTATGACTGGATTAA+CGG - tig0028961:48104-48123 Msa1440140:intron 30.0%
GTTCAACCAATTTAATGTCT+AGG - tig0028961:48260-48279 Msa1440140:intron 30.0%
TCACTTCCTAGACATTAAAT+TGG + tig0028961:48269-48288 None:intergenic 30.0%
ACTGCACACAACAAAATAAA+GGG + tig0028961:48319-48338 None:intergenic 30.0%
TGGATTTCACGAAATTTATG+TGG - tig0028961:48580-48599 Msa1440140:intron 30.0%
TAGCGATGATAAACAATGAT+TGG - tig0028961:48880-48899 Msa1440140:intron 30.0%
AACAAAACATTGGCACTAAA+AGG - tig0028961:49018-49037 Msa1440140:intron 30.0%
AAGATGTGGTCATTGATATA+TGG + tig0028961:49130-49149 None:intergenic 30.0%
ATACTTAGGTAATCAAGATG+TGG + tig0028961:49144-49163 None:intergenic 30.0%
!! TTTTAGAGAGGAGAATACTT+AGG + tig0028961:49158-49177 None:intergenic 30.0%
! TGTTTGTTAGGTAAAAGATG+TGG - tig0028961:49381-49400 Msa1440140:exon 30.0%
AGCTATAATCTCATGCTTAA+AGG - tig0028961:49422-49441 Msa1440140:five_prime_UTR 30.0%
TATATGAGACACTATGAACT+TGG - tig0028961:49498-49517 Msa1440140:five_prime_UTR 30.0%
AGAGAATGACCATAACCTTA+AGG + tig0028961:44773-44792 None:intergenic 35.0%
!! CCCCATTTTAATGTAACCAA+AGG + tig0028961:44880-44899 None:intergenic 35.0%
TTAAAATGGGGATACCCAAT+TGG - tig0028961:44889-44908 Msa1440140:three_prime_UTR 35.0%
ATGTCTACCTCTTCCATAAA+CGG - tig0028961:44969-44988 Msa1440140:intron 35.0%
GGTTTGTCTTGAATAAGAGA+AGG + tig0028961:45107-45126 None:intergenic 35.0%
CATAGTCGTACAAATGAACA+AGG + tig0028961:45286-45305 None:intergenic 35.0%
!!! GTCTATTGGTTTTGTGTCTT+TGG - tig0028961:45453-45472 Msa1440140:intron 35.0%
!! GGTTTTGTGTCTTTGGTTAT+TGG - tig0028961:45460-45479 Msa1440140:intron 35.0%
AGACAAAGATTTGCCATTAG+GGG + tig0028961:45488-45507 None:intergenic 35.0%
GGTAAGTTTAGTTAGGTTTG+AGG - tig0028961:45732-45751 Msa1440140:intron 35.0%
! TTTGGTTAGTTATATGGTGC+TGG + tig0028961:45805-45824 None:intergenic 35.0%
TAACTAATCACACACTTCTC+TGG + tig0028961:45901-45920 None:intergenic 35.0%
TAAGAGAGAAGAAATGGGAA+AGG - tig0028961:46267-46286 Msa1440140:intron 35.0%
AAGAGAGAAGAAATGGGAAA+GGG - tig0028961:46268-46287 Msa1440140:intron 35.0%
AAGAGCTCCAAAAATTGTTG+AGG - tig0028961:46308-46327 Msa1440140:intron 35.0%
TAAATAGTCATTGCATACCG+GGG + tig0028961:46901-46920 None:intergenic 35.0%
TTGTAACAGGCAAAATATGC+TGG - tig0028961:47648-47667 Msa1440140:CDS 35.0%
ATGAAGAACAGCATACTCAA+TGG + tig0028961:47685-47704 None:intergenic 35.0%
AAAAAAGACTTACGTGGAGT+AGG + tig0028961:47900-47919 None:intergenic 35.0%
CCAGTCATACACTAAATAGA+GGG + tig0028961:48099-48118 None:intergenic 35.0%
TCCAGTCATACACTAAATAG+AGG + tig0028961:48100-48119 None:intergenic 35.0%
CACTGCACACAACAAAATAA+AGG + tig0028961:48320-48339 None:intergenic 35.0%
! CAAAATTGGTTTACCTGCAA+AGG - tig0028961:48359-48378 Msa1440140:intron 35.0%
AAAACATTGGCACTAAAAGG+AGG - tig0028961:49021-49040 Msa1440140:intron 35.0%
GGATACTATGACTTTGTGAA+AGG - tig0028961:49042-49061 Msa1440140:intron 35.0%
! TGAAAGGATCTTTTGAGCTT+TGG - tig0028961:49058-49077 Msa1440140:intron 35.0%
! GAAAGGATCTTTTGAGCTTT+GGG - tig0028961:49059-49078 Msa1440140:intron 35.0%
! AAAGGATCTTTTGAGCTTTG+GGG - tig0028961:49060-49079 Msa1440140:intron 35.0%
CTTATGGAGAACAAGGAAAA+TGG + tig0028961:49656-49675 None:intergenic 35.0%
TAGCAAACTGGCAGATTATT+TGG - tig0028961:49677-49696 Msa1440140:intron 35.0%
AGCAAACTGGCAGATTATTT+GGG - tig0028961:49678-49697 Msa1440140:intron 35.0%
ACAAGAACAAGGCAATCCAA+AGG - tig0028961:44745-44764 Msa1440140:three_prime_UTR 40.0%
CAAGAACAAGGCAATCCAAA+GGG - tig0028961:44746-44765 Msa1440140:three_prime_UTR 40.0%
GATGTGTTCCATGACCAATT+GGG + tig0028961:44906-44925 None:intergenic 40.0%
TGATGTGTTCCATGACCAAT+TGG + tig0028961:44907-44926 None:intergenic 40.0%
ACTAAAGCCGTTTATGGAAG+AGG + tig0028961:44979-44998 None:intergenic 40.0%
AGAGAGACTAAAGCCGTTTA+TGG + tig0028961:44985-45004 None:intergenic 40.0%
AAGAGAAGGGAAGTTAGAAG+TGG + tig0028961:45093-45112 None:intergenic 40.0%
GAAGAAGAGGAAGCAAAAAC+AGG + tig0028961:45128-45147 None:intergenic 40.0%
GACAAAGATTTGCCATTAGG+GGG + tig0028961:45487-45506 None:intergenic 40.0%
!! GTTAGTTATATGGTGCTGGT+TGG + tig0028961:45801-45820 None:intergenic 40.0%
TAGGGAGAAGACTGAATTGA+AGG - tig0028961:46595-46614 Msa1440140:intron 40.0%
! AGCAAGAATCCAGCTTTGTA+TGG - tig0028961:46852-46871 Msa1440140:intron 40.0%
TTGTATGGTGAACTAGCCAA+AGG - tig0028961:46867-46886 Msa1440140:intron 40.0%
AAATAGTCATTGCATACCGG+GGG + tig0028961:46900-46919 None:intergenic 40.0%
AGCATGCAAAGACCATAAAC+TGG + tig0028961:47273-47292 None:intergenic 40.0%
GGAAATCTAGCACATGAGAT+GGG + tig0028961:47312-47331 None:intergenic 40.0%
TGGAAATCTAGCACATGAGA+TGG + tig0028961:47313-47332 None:intergenic 40.0%
GGTCAGAAATGTTGCTAACA+TGG - tig0028961:47351-47370 Msa1440140:intron 40.0%
TTGGAACAAACCTGGTCATA+TGG + tig0028961:47382-47401 None:intergenic 40.0%
GTATGCTGTTCTTCATCTCA+AGG - tig0028961:47689-47708 Msa1440140:CDS 40.0%
AGTGCTTGTGGTGGTATTAA+GGG - tig0028961:47848-47867 Msa1440140:intron 40.0%
GGCACTAGAAAAGTTAGTGT+AGG + tig0028961:47934-47953 None:intergenic 40.0%
!! TTTTCTAGTGCCACCTCTTA+TGG - tig0028961:47942-47961 Msa1440140:intron 40.0%
ATCCTTCCAAGTTCCATAAG+AGG + tig0028961:47958-47977 None:intergenic 40.0%
CCCTCTATTTAGTGTATGAC+TGG - tig0028961:48096-48115 Msa1440140:intron 40.0%
AACGGTGACTTTGACAGAAT+TGG - tig0028961:48122-48141 Msa1440140:intron 40.0%
ACGGTGACTTTGACAGAATT+GGG - tig0028961:48123-48142 Msa1440140:intron 40.0%
!! ACTTAGATTGATGGTGACTG+TGG + tig0028961:48209-48228 None:intergenic 40.0%
TGTGTGCAGTGATTTCATTG+AGG - tig0028961:48329-48348 Msa1440140:intron 40.0%
CAGTGATTTCATTGAGGAGT+GGG - tig0028961:48335-48354 Msa1440140:intron 40.0%
ATTGAGGAGTGGGTCAAAAT+TGG - tig0028961:48345-48364 Msa1440140:intron 40.0%
! AAACATGGAGATGCACCTTT+TGG - tig0028961:48396-48415 Msa1440140:intron 40.0%
GAAGCTGTGAATGTTTCTCT+TGG - tig0028961:48955-48974 Msa1440140:intron 40.0%
TCACAAATGGGTAGGTAAGA+AGG + tig0028961:48984-49003 None:intergenic 40.0%
! GGGATTGGTGAACAAAACAT+TGG - tig0028961:49008-49027 Msa1440140:intron 40.0%
TTAGGTAAAAGATGTGGCCA+CGG - tig0028961:49387-49406 Msa1440140:exon 40.0%
! TTGCTAGCTTATGGAGAACA+AGG + tig0028961:49663-49682 None:intergenic 40.0%
TTCTCCATAAGCTAGCAAAC+TGG - tig0028961:49665-49684 Msa1440140:intron 40.0%
CCATAACCTTAAGGTCCCTT+TGG + tig0028961:44764-44783 None:intergenic 45.0%
CCAAAGGGACCTTAAGGTTA+TGG - tig0028961:44761-44780 Msa1440140:three_prime_UTR 45.0%
AGGGAAGTTAGAAGTGGAAG+AGG + tig0028961:45087-45106 None:intergenic 45.0%
GGTGATGATAGGAGAAGAAG+AGG + tig0028961:45141-45160 None:intergenic 45.0%
! TCCTATCATCACCCCAGTTT+TGG - tig0028961:45148-45167 Msa1440140:intron 45.0%
ACCAAAACTGGGGTGATGAT+AGG + tig0028961:45152-45171 None:intergenic 45.0%
TTGGTTATTGGTCCCCCTAA+TGG - tig0028961:45472-45491 Msa1440140:intron 45.0%
AGGTTTGAGGGACAAATGTG+TGG - tig0028961:45745-45764 Msa1440140:intron 45.0%
AATGGGAAAGGGCTATGATG+AGG - tig0028961:46279-46298 Msa1440140:intron 45.0%
!!! CTCAACTTTTTCAGCTGCTG+TGG + tig0028961:46621-46640 None:intergenic 45.0%
GAGCAAATTACAGCTCAGCT+AGG - tig0028961:46638-46657 Msa1440140:intron 45.0%
!! ACCAGTTTTGATCCTCTCTG+AGG + tig0028961:46702-46721 None:intergenic 45.0%
ACAAAGCTGGATTCTTGCTG+TGG + tig0028961:46851-46870 None:intergenic 45.0%
GCTAGTTCACCATACAAAGC+TGG + tig0028961:46864-46883 None:intergenic 45.0%
AATAGTCATTGCATACCGGG+GGG + tig0028961:46899-46918 None:intergenic 45.0%
GAACAAACCTGGTCATATGG+TGG + tig0028961:47379-47398 None:intergenic 45.0%
TATCGTGTCCGTGTTTGAGT+CGG + tig0028961:47448-47467 None:intergenic 45.0%
CAGGCAAAATATGCTGGAAC+TGG - tig0028961:47654-47673 Msa1440140:CDS 45.0%
CCACAATGTTGGACACCTAT+AGG + tig0028961:47817-47836 None:intergenic 45.0%
CCTATAGGTGTCCAACATTG+TGG - tig0028961:47814-47833 Msa1440140:intron 45.0%
GTGTCCAACATTGTGGTCAT+TGG - tig0028961:47821-47840 Msa1440140:intron 45.0%
GTGTCCAATGACCACAATGT+TGG + tig0028961:47828-47847 None:intergenic 45.0%
CAGTGCTTGTGGTGGTATTA+AGG - tig0028961:47847-47866 Msa1440140:intron 45.0%
GTGCTTGTGGTGGTATTAAG+GGG - tig0028961:47849-47868 Msa1440140:intron 45.0%
CTTCCAAGTTCCATAAGAGG+TGG + tig0028961:47955-47974 None:intergenic 45.0%
CACCTCTTATGGAACTTGGA+AGG - tig0028961:47953-47972 Msa1440140:intron 45.0%
CGGTGACTTTGACAGAATTG+GGG - tig0028961:48124-48143 Msa1440140:intron 45.0%
TGGTGACTGTGGAAGAATTG+CGG + tig0028961:48198-48217 None:intergenic 45.0%
GCAGTGATTTCATTGAGGAG+TGG - tig0028961:48334-48353 Msa1440140:intron 45.0%
TGGTTTACCTGCAAAGGCAA+AGG - tig0028961:48365-48384 Msa1440140:intron 45.0%
GCAAAGGTGAAGGCAAAACA+TGG - tig0028961:48381-48400 Msa1440140:intron 45.0%
TGTGTGCATAGCTCTCCAAA+AGG + tig0028961:48414-48433 None:intergenic 45.0%
! CAAGCATGTTGCTTGTGGAT+TGG + tig0028961:48467-48486 None:intergenic 45.0%
TCCACAAGCAACATGCTTGA+TGG - tig0028961:48468-48487 Msa1440140:intron 45.0%
! TCCATCAAGCATGTTGCTTG+TGG + tig0028961:48472-48491 None:intergenic 45.0%
TACCTACCCATTTGTGAGAG+AGG - tig0028961:48987-49006 Msa1440140:intron 45.0%
ACCTACCCATTTGTGAGAGA+GGG - tig0028961:48988-49007 Msa1440140:intron 45.0%
CCAATCCCTCTCTCACAAAT+GGG + tig0028961:48996-49015 None:intergenic 45.0%
ACCAATCCCTCTCTCACAAA+TGG + tig0028961:48997-49016 None:intergenic 45.0%
!! GAGCTTTGGGGACTTGAATT+TGG - tig0028961:49072-49091 Msa1440140:intron 45.0%
TAGCTTCCAATGTAGAACCG+TGG + tig0028961:49407-49426 None:intergenic 45.0%
!! TCTGCCAGTTTGCTAGCTTA+TGG + tig0028961:49672-49691 None:intergenic 45.0%
!!! TTTTTTCTAATAAAAAAATT+TGG + tig0028961:45823-45842 None:intergenic 5.0%
!!! ATTTTTTATATAATTCTAAT+AGG + tig0028961:46353-46372 None:intergenic 5.0%
!!! TTACTTTTATAAAAAATAAA+GGG + tig0028961:48739-48758 None:intergenic 5.0%
!!! TTTACTTTTATAAAAAATAA+AGG + tig0028961:48740-48759 None:intergenic 5.0%
GGCAATCCAAAGGGACCTTA+AGG - tig0028961:44755-44774 Msa1440140:three_prime_UTR 50.0%
TGGGGATACCCAATTGGTCA+TGG - tig0028961:44895-44914 Msa1440140:three_prime_UTR 50.0%
GGAACAACAGCATCAGCTGA+TGG - tig0028961:46659-46678 Msa1440140:CDS 50.0%
!! CTCTCTGAGGCTTCAGATGT+TGG + tig0028961:46689-46708 None:intergenic 50.0%
! CAACATCTGAAGCCTCAGAG+AGG - tig0028961:46687-46706 Msa1440140:intron 50.0%
GCCTCAGAGAGGATCAAAAC+TGG - tig0028961:46698-46717 Msa1440140:intron 50.0%
ATAGTCATTGCATACCGGGG+GGG + tig0028961:46898-46917 None:intergenic 50.0%
CATGTGCTAGATTTCCAGCC+AGG - tig0028961:47316-47335 Msa1440140:intron 50.0%
CTGACCACAAAAGCTTCACC+TGG + tig0028961:47337-47356 None:intergenic 50.0%
CATGGTTCCACCATATGACC+AGG - tig0028961:47369-47388 Msa1440140:intron 50.0%
!! TGTCTCCACCGACTCAAACA+CGG - tig0028961:47437-47456 Msa1440140:intron 50.0%
GTCATTGGACACAGTGCTTG+TGG - tig0028961:47836-47855 Msa1440140:intron 50.0%
ATTGGACACAGTGCTTGTGG+TGG - tig0028961:47839-47858 Msa1440140:intron 50.0%
GTGGAGTAGGCTCCATCAAA+TGG + tig0028961:47887-47906 None:intergenic 50.0%
GTGCCACCTCTTATGGAACT+TGG - tig0028961:47949-47968 Msa1440140:intron 50.0%
ACCTGCAAAGGCAAAGGTGA+AGG - tig0028961:48371-48390 Msa1440140:intron 50.0%
GCTATGCACACACTGTGAGA+AGG - tig0028961:48422-48441 Msa1440140:intron 50.0%
TCCCTCTCTCACAAATGGGT+AGG + tig0028961:48992-49011 None:intergenic 50.0%
CCCATTTGTGAGAGAGGGAT+TGG - tig0028961:48993-49012 Msa1440140:intron 50.0%
ATGTGGCCACGGTTCTACAT+TGG - tig0028961:49398-49417 Msa1440140:five_prime_UTR 50.0%
GTCGTGTGTCTGCAATGAAG+AGG - tig0028961:49444-49463 Msa1440140:five_prime_UTR 50.0%
CCACAAAAGCTTCACCTGGC+TGG + tig0028961:47333-47352 None:intergenic 55.0%
! CCAGCCAGGTGAAGCTTTTG+TGG - tig0028961:47330-47349 Msa1440140:intron 55.0%
GCCTTCACCTTTGCCTTTGC+AGG + tig0028961:48375-48394 None:intergenic 55.0%
CGTGTCCGTGTTTGAGTCGG+TGG + tig0028961:47445-47464 None:intergenic 60.0%
CATTGCATACCGGGGGGGCT+TGG + tig0028961:46893-46912 None:intergenic 65.0%
AGCCAAAGGCCAAGCCCCCC+CGG - tig0028961:46881-46900 Msa1440140:intron 70.0%
! TACCGGGGGGGCTTGGCCTT+TGG + tig0028961:46886-46905 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0028961 gene 44608 49751 44608 ID=Msa1440140;Name=Msa1440140
tig0028961 mRNA 44608 49751 44608 ID=Msa1440140-mRNA-1;Parent=Msa1440140;Name=Msa1440140-mRNA-1;_AED=0.10;_eAED=0.10;_QI=312|1|1|1|0.8|0.63|11|420|329
tig0028961 exon 44608 44968 44608 ID=Msa1440140-mRNA-1:exon:12113;Parent=Msa1440140-mRNA-1
tig0028961 exon 45181 45404 45181 ID=Msa1440140-mRNA-1:exon:12112;Parent=Msa1440140-mRNA-1
tig0028961 exon 45916 46021 45916 ID=Msa1440140-mRNA-1:exon:12111;Parent=Msa1440140-mRNA-1
tig0028961 exon 46453 46538 46453 ID=Msa1440140-mRNA-1:exon:12110;Parent=Msa1440140-mRNA-1
tig0028961 exon 46649 46702 46649 ID=Msa1440140-mRNA-1:exon:12109;Parent=Msa1440140-mRNA-1
tig0028961 exon 46969 47085 46969 ID=Msa1440140-mRNA-1:exon:12108;Parent=Msa1440140-mRNA-1
tig0028961 exon 47457 47505 47457 ID=Msa1440140-mRNA-1:exon:12107;Parent=Msa1440140-mRNA-1
tig0028961 exon 47609 47761 47609 ID=Msa1440140-mRNA-1:exon:12106;Parent=Msa1440140-mRNA-1
tig0028961 exon 48030 48088 48030 ID=Msa1440140-mRNA-1:exon:12105;Parent=Msa1440140-mRNA-1
tig0028961 exon 49190 49648 49190 ID=Msa1440140-mRNA-1:exon:12104;Parent=Msa1440140-mRNA-1
tig0028961 exon 49698 49751 49698 ID=Msa1440140-mRNA-1:exon:12103;Parent=Msa1440140-mRNA-1
tig0028961 five_prime_UTR 49698 49751 49698 ID=Msa1440140-mRNA-1:five_prime_utr;Parent=Msa1440140-mRNA-1
tig0028961 five_prime_UTR 49391 49648 49391 ID=Msa1440140-mRNA-1:five_prime_utr;Parent=Msa1440140-mRNA-1
tig0028961 CDS 49190 49390 49190 ID=Msa1440140-mRNA-1:cds;Parent=Msa1440140-mRNA-1
tig0028961 CDS 48030 48088 48030 ID=Msa1440140-mRNA-1:cds;Parent=Msa1440140-mRNA-1
tig0028961 CDS 47609 47761 47609 ID=Msa1440140-mRNA-1:cds;Parent=Msa1440140-mRNA-1
tig0028961 CDS 47457 47505 47457 ID=Msa1440140-mRNA-1:cds;Parent=Msa1440140-mRNA-1
tig0028961 CDS 46969 47085 46969 ID=Msa1440140-mRNA-1:cds;Parent=Msa1440140-mRNA-1
tig0028961 CDS 46649 46702 46649 ID=Msa1440140-mRNA-1:cds;Parent=Msa1440140-mRNA-1
tig0028961 CDS 46453 46538 46453 ID=Msa1440140-mRNA-1:cds;Parent=Msa1440140-mRNA-1
tig0028961 CDS 45916 46021 45916 ID=Msa1440140-mRNA-1:cds;Parent=Msa1440140-mRNA-1
tig0028961 CDS 45240 45404 45240 ID=Msa1440140-mRNA-1:cds;Parent=Msa1440140-mRNA-1
tig0028961 three_prime_UTR 45181 45239 45181 ID=Msa1440140-mRNA-1:three_prime_utr;Parent=Msa1440140-mRNA-1
tig0028961 three_prime_UTR 44608 44968 44608 ID=Msa1440140-mRNA-1:three_prime_utr;Parent=Msa1440140-mRNA-1
Gene Sequence

>Msa1440140

ATGTCTACCTCTTCCATAAACGGCTTTAGTCTCTCTTCTTTGTCCCCTACCAAAACTTCTATTAAAAAAGTTACATTGAGACCTATTGTTTCTGCATCTCTTAACTCTTCTTCTTCCTCTTCCACTTCTAACTTCCCTTCTCTTATTCAAGACAAACCTGTTTTTGCTTCCTCTTCTTCTCCTATCATCACCCCAGTTTTGAGAGAAGAAATGGGAAAGGGCTATGATGAGGCTATTGAAGAGCTCCAAAAATTGTTGAGGGAGAAGACTGAATTGAAGGCCACAGCAGCTGAAAAAGTTGAGCAAATTACAGCTCAGCTAGGAACAACAGCATCAGCTGATGGTGTTCCAACATCTGAAGCCTCAGAGAGGATCAAAACTGGTTTCCTTCACTTCAAGAAAGAGAAATATGACAAGAATCCAGCTTTGTATGGTGAACTAGCCAAAGGCCAAGCCCCCCCGTTTATGGTCTTTGCATGCTCAGACTCTAGAGTCTGCCCATCTCATGTGCTAGATTTCCAGCCAGGTGAAGCTTTTGTGGTCAGAAATGTTGCTAACATGGTTCCACCATATGACCAGGCAAAATATGCTGGAACTGGATCTGCCATTGAGTATGCTGTTCTTCATCTCAAGGTGTCCAACATTGTGGTCATTGGACACAGTGCTTGTGGTGGTATTAAGGGGCTTTTGTCTTTTCCATTTGATGGAGCCTACTCCACTGATTTCATTGAGGAGTGGGTCAAAATTGGTTTACCTGCAAAGGCAAAGGTGAAGGCAAAACATGGAGATGCACCTTTTGGAGAGCTATGCACACACTGTGAGAAGGAAGCTGTGAATGTTTCTCTTGGAAACCTTCTTACCTACCCATTTGTGAGAGAGGGATTGGTGAACAAAACATTGGCACTAAAAGGAGGATACTATGACTTTGTGAAAGGATCTTTTGAGCTTTGGGGACTTGAATTTGGCCTTTCTTCAACTTTCTCCGTATGA

Protein sequence

>Msa1440140

MSTSSINGFSLSSLSPTKTSIKKVTLRPIVSASLNSSSSSSTSNFPSLIQDKPVFASSSSPIITPVLREEMGKGYDEAIEELQKLLREKTELKATAAEKVEQITAQLGTTASADGVPTSEASERIKTGFLHFKKEKYDKNPALYGELAKGQAPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANMVPPYDQAKYAGTGSAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGAYSTDFIEEWVKIGLPAKAKVKAKHGDAPFGELCTHCEKEAVNVSLGNLLTYPFVREGLVNKTLALKGGYYDFVKGSFELWGLEFGLSSTFSV*