Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0654930 | XP_013457327.1 | 71.910 | 178 | 1 | 1 | 1 | 178 | 1 | 129 | 5.81e-74 | 228 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0654930 | sp|P56812|PDCD5_MOUSE | 31.461 | 178 | 66 | 2 | 1 | 178 | 1 | 122 | 3.55e-19 | 81.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003300 | Msa0654930 | -0.821614 | 3.676159e-53 | -8.615850e-47 |
| Msa0007990 | Msa0654930 | -0.815286 | 9.991168e-52 | -8.615850e-47 |
| Msa0022750 | Msa0654930 | 0.830579 | 2.712310e-55 | -8.615850e-47 |
| Msa0036130 | Msa0654930 | -0.803699 | 3.077032e-49 | -8.615850e-47 |
| Msa0042550 | Msa0654930 | -0.803253 | 3.806852e-49 | -8.615850e-47 |
| Msa0055070 | Msa0654930 | -0.809040 | 2.303060e-50 | -8.615850e-47 |
| Msa0056450 | Msa0654930 | -0.812050 | 5.152244e-51 | -8.615850e-47 |
| Msa0077450 | Msa0654930 | -0.801967 | 7.013539e-49 | -8.615850e-47 |
| Msa0100160 | Msa0654930 | -0.809784 | 1.594323e-50 | -8.615850e-47 |
| Msa0101020 | Msa0654930 | -0.801819 | 7.519790e-49 | -8.615850e-47 |
| Msa0107640 | Msa0654930 | -0.801310 | 9.562765e-49 | -8.615850e-47 |
| Msa0108390 | Msa0654930 | -0.822313 | 2.532143e-53 | -8.615850e-47 |
| Msa0648240 | Msa0654930 | 0.800191 | 1.618159e-48 | -8.615850e-47 |
| Msa0654930 | Msa0661320 | -0.825482 | 4.576141e-54 | -8.615850e-47 |
| Msa0654930 | Msa0691050 | -0.814331 | 1.626976e-51 | -8.615850e-47 |
| Msa0654930 | Msa0696540 | -0.803520 | 3.352694e-49 | -8.615850e-47 |
| Msa0654930 | Msa0724210 | -0.800904 | 1.157815e-48 | -8.615850e-47 |
| Msa0654930 | Msa0731940 | -0.813259 | 2.802094e-51 | -8.615850e-47 |
| Msa0654930 | Msa0750240 | -0.802954 | 4.390733e-49 | -8.615850e-47 |
| Msa0654930 | Msa0751260 | -0.807718 | 4.407336e-50 | -8.615850e-47 |
| Msa0654930 | Msa0757450 | 0.816541 | 5.243430e-52 | -8.615850e-47 |
| Msa0654930 | Msa0757500 | 0.819500 | 1.124390e-52 | -8.615850e-47 |
| Msa0654930 | Msa0760130 | -0.817383 | 3.393126e-52 | -8.615850e-47 |
| Msa0654930 | Msa0777570 | 0.819740 | 9.908456e-53 | -8.615850e-47 |
| Msa0654930 | Msa0795070 | -0.807769 | 4.299237e-50 | -8.615850e-47 |
| Msa0654930 | Msa0817110 | -0.814308 | 1.646075e-51 | -8.615850e-47 |
| Msa0654930 | Msa0834880 | -0.806145 | 9.483872e-50 | -8.615850e-47 |
| Msa0654930 | Msa0868160 | -0.822024 | 2.955769e-53 | -8.615850e-47 |
| Msa0654930 | Msa0900620 | -0.824822 | 6.553480e-54 | -8.615850e-47 |
| Msa0654930 | Msa0908770 | 0.805677 | 1.189128e-49 | -8.615850e-47 |
| Msa0654930 | Msa0924310 | -0.802172 | 6.363935e-49 | -8.615850e-47 |
| Msa0654930 | Msa0926890 | -0.807280 | 5.460562e-50 | -8.615850e-47 |
| Msa0654930 | Msa0930910 | 0.824616 | 7.330835e-54 | -8.615850e-47 |
| Msa0654930 | Msa0969520 | -0.811682 | 6.194638e-51 | -8.615850e-47 |
| Msa0654930 | Msa1000160 | -0.824283 | 8.779265e-54 | -8.615850e-47 |
| Msa0654930 | Msa1000250 | -0.810893 | 9.189520e-51 | -8.615850e-47 |
| Msa0654930 | Msa1001390 | -0.804986 | 1.659679e-49 | -8.615850e-47 |
| Msa0654930 | Msa1008750 | -0.816493 | 5.374445e-52 | -8.615850e-47 |
| Msa0654930 | Msa1028970 | -0.812327 | 4.482776e-51 | -8.615850e-47 |
| Msa0654930 | Msa1039710 | 0.804250 | 2.363838e-49 | -8.615850e-47 |
| Msa0654930 | Msa1050740 | -0.806020 | 1.007200e-49 | -8.615850e-47 |
| Msa0654930 | Msa1061020 | 0.817865 | 2.642278e-52 | -8.615850e-47 |
| Msa0654930 | Msa1061060 | 0.819919 | 9.019467e-53 | -8.615850e-47 |
| Msa0654930 | Msa1068200 | 0.806724 | 7.159366e-50 | -8.615850e-47 |
| Msa0654930 | Msa1075220 | 0.808086 | 3.680245e-50 | -8.615850e-47 |
| Msa0654930 | Msa1080960 | -0.824467 | 7.945859e-54 | -8.615850e-47 |
| Msa0654930 | Msa1098250 | -0.816587 | 5.120078e-52 | -8.615850e-47 |
| Msa0654930 | Msa1098270 | -0.838000 | 3.728177e-57 | -8.615850e-47 |
| Msa0654930 | Msa1111870 | -0.807380 | 5.200644e-50 | -8.615850e-47 |
| Msa0654930 | Msa1118760 | -0.815152 | 1.070177e-51 | -8.615850e-47 |
| Msa0654930 | Msa1121450 | 0.812472 | 4.167817e-51 | -8.615850e-47 |
| Msa0654930 | Msa1121490 | -0.818974 | 1.481191e-52 | -8.615850e-47 |
| Msa0654930 | Msa1127770 | -0.804798 | 1.816745e-49 | -8.615850e-47 |
| Msa0654930 | Msa1133220 | -0.800775 | 1.230109e-48 | -8.615850e-47 |
| Msa0654930 | Msa1137570 | -0.831810 | 1.351665e-55 | -8.615850e-47 |
| Msa0654930 | Msa1138320 | -0.802865 | 4.580650e-49 | -8.615850e-47 |
| Msa0654930 | Msa1139890 | -0.821647 | 3.612645e-53 | -8.615850e-47 |
| Msa0654930 | Msa1143020 | -0.807065 | 6.063285e-50 | -8.615850e-47 |
| Msa0654930 | Msa1144720 | 0.815398 | 9.437765e-52 | -8.615850e-47 |
| Msa0654930 | Msa1156340 | 0.807181 | 5.730280e-50 | -8.615850e-47 |
| Msa0654930 | Msa1158660 | -0.809662 | 1.693717e-50 | -8.615850e-47 |
| Msa0654930 | Msa1162550 | 0.810055 | 1.394100e-50 | -8.615850e-47 |
| Msa0654930 | Msa1204100 | 0.843680 | 1.207326e-58 | -8.615850e-47 |
| Msa0654930 | Msa1238930 | -0.802404 | 5.702240e-49 | -8.615850e-47 |
| Msa0654930 | Msa1243100 | -0.803021 | 4.252595e-49 | -8.615850e-47 |
| Msa0654930 | Msa1244750 | 0.807903 | 4.027242e-50 | -8.615850e-47 |
| Msa0654930 | Msa1246360 | -0.800365 | 1.491583e-48 | -8.615850e-47 |
| Msa0654930 | Msa1258370 | -0.806673 | 7.336929e-50 | -8.615850e-47 |
| Msa0654930 | Msa1282580 | 0.815031 | 1.138411e-51 | -8.615850e-47 |
| Msa0654930 | Msa1296460 | 0.807129 | 5.876391e-50 | -8.615850e-47 |
| Msa0654930 | Msa1297290 | -0.803569 | 3.274978e-49 | -8.615850e-47 |
| Msa0654930 | Msa1298370 | -0.805045 | 1.613265e-49 | -8.615850e-47 |
| Msa0654930 | Msa1319820 | -0.802333 | 5.897841e-49 | -8.615850e-47 |
| Msa0654930 | Msa1329050 | 0.842272 | 2.861657e-58 | -8.615850e-47 |
| Msa0654930 | Msa1332000 | -0.822859 | 1.890941e-53 | -8.615850e-47 |
| Msa0654930 | Msa1352540 | 0.827723 | 1.336685e-54 | -8.615850e-47 |
| Msa0654930 | Msa1359560 | -0.803075 | 4.144344e-49 | -8.615850e-47 |
| Msa0654930 | Msa1359920 | -0.813112 | 3.018698e-51 | -8.615850e-47 |
| Msa0654930 | Msa1372150 | -0.804665 | 1.936834e-49 | -8.615850e-47 |
| Msa0654930 | Msa1378940 | -0.821539 | 3.825992e-53 | -8.615850e-47 |
| Msa0654930 | Msa1379590 | -0.864603 | 1.079494e-64 | -8.615850e-47 |
| Msa0654930 | Msa1379850 | -0.803517 | 3.356728e-49 | -8.615850e-47 |
| Msa0654930 | Msa1385000 | -0.803966 | 2.709157e-49 | -8.615850e-47 |
| Msa0654930 | Msa1408620 | 0.813278 | 2.775431e-51 | -8.615850e-47 |
| Msa0654930 | Msa1423880 | -0.812129 | 4.951037e-51 | -8.615850e-47 |
| Msa0654930 | Msa1424640 | -0.862354 | 5.378387e-64 | -8.615850e-47 |
| Msa0654930 | Msa1440740 | -0.824540 | 7.637439e-54 | -8.615850e-47 |
| Msa0654930 | Msa1445390 | 0.819784 | 9.681327e-53 | -8.615850e-47 |
| Msa0654930 | Msa1449340 | 0.810253 | 1.263790e-50 | -8.615850e-47 |
| Msa0654930 | Msa1451620 | 0.801559 | 8.505408e-49 | -8.615850e-47 |
| Msa0654930 | Msa1454530 | -0.802175 | 6.355471e-49 | -8.615850e-47 |
| Msa0654930 | Msa1454620 | -0.821995 | 3.001802e-53 | -8.615850e-47 |
| Msa0654930 | Msa1458340 | -0.810330 | 1.216453e-50 | -8.615850e-47 |
| Msa0654930 | Msa1459050 | -0.819026 | 1.441369e-52 | -8.615850e-47 |
| Msa0654930 | Msa1466540 | -0.807869 | 4.094557e-50 | -8.615850e-47 |
| Msa0133980 | Msa0654930 | 0.802132 | 6.486592e-49 | -8.615850e-47 |
| Msa0140500 | Msa0654930 | 0.819947 | 8.887752e-53 | -8.615850e-47 |
| Msa0149300 | Msa0654930 | -0.816264 | 6.049464e-52 | -8.615850e-47 |
| Msa0169820 | Msa0654930 | -0.803764 | 2.983311e-49 | -8.615850e-47 |
| Msa0178510 | Msa0654930 | -0.814521 | 1.476725e-51 | -8.615850e-47 |
| Msa0187030 | Msa0654930 | -0.805117 | 1.558643e-49 | -8.615850e-47 |
| Msa0188150 | Msa0654930 | -0.833351 | 5.606591e-56 | -8.615850e-47 |
| Msa0199800 | Msa0654930 | 0.816383 | 5.690397e-52 | -8.615850e-47 |
| Msa0200560 | Msa0654930 | -0.804157 | 2.471826e-49 | -8.615850e-47 |
| Msa0215320 | Msa0654930 | 0.822728 | 2.028503e-53 | -8.615850e-47 |
| Msa0236700 | Msa0654930 | 0.806765 | 7.016079e-50 | -8.615850e-47 |
| Msa0381610 | Msa0654930 | 0.836067 | 1.162976e-56 | -8.615850e-47 |
| Msa0388960 | Msa0654930 | -0.802603 | 5.187973e-49 | -8.615850e-47 |
| Msa0393620 | Msa0654930 | -0.810105 | 1.359691e-50 | -8.615850e-47 |
| Msa0394260 | Msa0654930 | -0.818349 | 2.053731e-52 | -8.615850e-47 |
| Msa0398200 | Msa0654930 | -0.801523 | 8.648172e-49 | -8.615850e-47 |
| Msa0403660 | Msa0654930 | -0.821352 | 4.225619e-53 | -8.615850e-47 |
| Msa0422180 | Msa0654930 | -0.806861 | 6.696771e-50 | -8.615850e-47 |
| Msa0429090 | Msa0654930 | -0.802536 | 5.355035e-49 | -8.615850e-47 |
| Msa0432670 | Msa0654930 | -0.810393 | 1.178609e-50 | -8.615850e-47 |
| Msa0433410 | Msa0654930 | 0.806998 | 6.263730e-50 | -8.615850e-47 |
| Msa0436370 | Msa0654930 | -0.801351 | 9.381552e-49 | -8.615850e-47 |
| Msa0468800 | Msa0654930 | -0.807114 | 5.919847e-50 | -8.615850e-47 |
| Msa0469940 | Msa0654930 | 0.829850 | 4.086975e-55 | -8.615850e-47 |
| Msa0255550 | Msa0654930 | -0.812574 | 3.959202e-51 | -8.615850e-47 |
| Msa0272730 | Msa0654930 | -0.802508 | 5.425932e-49 | -8.615850e-47 |
| Msa0275660 | Msa0654930 | -0.814158 | 1.776293e-51 | -8.615850e-47 |
| Msa0277420 | Msa0654930 | -0.814986 | 1.165092e-51 | -8.615850e-47 |
| Msa0311610 | Msa0654930 | -0.808379 | 3.187964e-50 | -8.615850e-47 |
| Msa0317270 | Msa0654930 | -0.804118 | 2.518499e-49 | -8.615850e-47 |
| Msa0328070 | Msa0654930 | -0.803515 | 3.359555e-49 | -8.615850e-47 |
| Msa0336310 | Msa0654930 | -0.803240 | 3.830669e-49 | -8.615850e-47 |
| Msa0342010 | Msa0654930 | -0.805350 | 1.393016e-49 | -8.615850e-47 |
| Msa0344690 | Msa0654930 | 0.817248 | 3.639288e-52 | -8.615850e-47 |
| Msa0350320 | Msa0654930 | 0.865014 | 8.027205e-65 | -8.615850e-47 |
| Msa0517090 | Msa0654930 | -0.823067 | 1.691256e-53 | -8.615850e-47 |
| Msa0526070 | Msa0654930 | 0.801539 | 8.586700e-49 | -8.615850e-47 |
| Msa0572420 | Msa0654930 | -0.812511 | 4.086724e-51 | -8.615850e-47 |
| Msa0574760 | Msa0654930 | 0.832157 | 1.109360e-55 | -8.615850e-47 |
| Msa0579660 | Msa0654930 | -0.802914 | 4.475667e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0654930 | MtrunA17_Chr4g0051861 | 71.910 | 178 | 1 | 1 | 1 | 178 | 1 | 129 | 5.35e-78 | 228 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0654930 | AT1G29850.1 | 59.444 | 180 | 20 | 3 | 1 | 178 | 1 | 129 | 4.17e-59 | 181 |
| Msa0654930 | AT1G29850.2 | 59.116 | 181 | 20 | 3 | 1 | 178 | 1 | 130 | 1.13e-58 | 180 |
| Msa0654930 | AT1G29850.3 | 54.321 | 162 | 23 | 2 | 14 | 173 | 1 | 113 | 2.97e-46 | 148 |
Find 76 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTACATTGAAATTGAAATT+TGG | 0.145406 | 4_3:-63310698 | Msa0654930:three_prime_UTR |
| ATCAAATATCCAGTTTAATT+TGG | 0.149870 | 4_3:+63310659 | None:intergenic |
| AAATACATACATCAAGATTT+TGG | 0.154469 | 4_3:-63314562 | Msa0654930:five_prime_UTR |
| TCCTGGGCACTCTGTTGTTC+AGG | 0.184238 | 4_3:+63313884 | None:intergenic |
| TTACATTGAAATTGAAATTT+GGG | 0.272798 | 4_3:-63310697 | Msa0654930:three_prime_UTR |
| GAGAAGGATGCAGGAGCTTA+TGG | 0.276747 | 4_3:-63314033 | Msa0654930:CDS |
| TGTTTATCCTTGGTTTGTTC+AGG | 0.277158 | 4_3:-63311592 | Msa0654930:intron |
| CCTGGGCACTCTGTTGTTCA+GGG | 0.335041 | 4_3:+63313885 | None:intergenic |
| CTAACCTCTTTGCATCTTCC+TGG | 0.348654 | 4_3:+63313867 | None:intergenic |
| GCACTCTGTTGTTCAGGGTT+TGG | 0.349627 | 4_3:+63313890 | None:intergenic |
| TGGAGGTGTTTGTTTATCCT+TGG | 0.378225 | 4_3:-63311602 | Msa0654930:CDS |
| ATTGCAAAGCTCGCTGGTTG+TGG | 0.384985 | 4_3:-63311652 | Msa0654930:CDS |
| AGCTGGACTGTGAAATGAAT+GGG | 0.397470 | 4_3:+63314458 | None:intergenic |
| TGCCTGCCACCAAATTAAAC+TGG | 0.404753 | 4_3:-63310668 | Msa0654930:three_prime_UTR |
| TAGCTTCGCGGTCTCTTAGC+TGG | 0.408186 | 4_3:-63310807 | Msa0654930:three_prime_UTR |
| TGGGAAGTTACCATTTGGTT+AGG | 0.416197 | 4_3:+63314415 | None:intergenic |
| ATCCAGTTTAATTTGGTGGC+AGG | 0.418750 | 4_3:+63310666 | None:intergenic |
| CCACCACCACAGATCGCGTT+TGG | 0.419352 | 4_3:+63314519 | None:intergenic |
| CTTCCCATTGCAAAGCTCGC+TGG | 0.423551 | 4_3:-63311658 | Msa0654930:CDS |
| TGTCTGATTGCTTCAAGCTC+AGG | 0.435885 | 4_3:+63314056 | None:intergenic |
| TGCAGTTGCTCGAATTGCTT+TGG | 0.438478 | 4_3:-63312457 | Msa0654930:intron |
| TATATTGAGAGCTGCTCAAA+TGG | 0.442321 | 4_3:-63312400 | Msa0654930:CDS |
| TTGCAAAGCTCGCTGGTTGT+GGG | 0.455620 | 4_3:-63311651 | Msa0654930:CDS |
| GAGGATGATGATTAGCTTCG+CGG | 0.470861 | 4_3:-63310819 | Msa0654930:exon |
| AGAAGGATGCAGGAGCTTAT+GGG | 0.471110 | 4_3:-63314032 | Msa0654930:CDS |
| AATGGGTCAGATAGCTGAAA+AGG | 0.471285 | 4_3:-63312382 | Msa0654930:intron |
| TAATTAATTTAGGGAGGCAG+AGG | 0.482187 | 4_3:-63313687 | Msa0654930:intron |
| TGCCTCATGGCATGAGCCAT+TGG | 0.487587 | 4_3:+63310575 | None:intergenic |
| AAATATCCAGTTTAATTTGG+TGG | 0.496552 | 4_3:+63310662 | None:intergenic |
| CAGGAGCTTATGGGCCGACA+TGG | 0.509267 | 4_3:-63314023 | Msa0654930:CDS |
| TTCATTTCACAGTCCAGCTA+GGG | 0.510167 | 4_3:-63314454 | Msa0654930:five_prime_UTR |
| ATTCATTTCACAGTCCAGCT+AGG | 0.514017 | 4_3:-63314455 | Msa0654930:five_prime_UTR |
| CAACCAGCGAGCTTTGCAAT+GGG | 0.516767 | 4_3:+63311655 | None:intergenic |
| AAAGGTATGTTAATTGTGGA+TGG | 0.520510 | 4_3:-63310611 | Msa0654930:three_prime_UTR |
| TGTGAAAGGTATGTTAATTG+TGG | 0.521082 | 4_3:-63310615 | Msa0654930:three_prime_UTR |
| TAGCTGGACTGTGAAATGAA+TGG | 0.528465 | 4_3:+63314457 | None:intergenic |
| AGCAAAGCAGACAAAAGTTA+CGG | 0.530115 | 4_3:-63310955 | Msa0654930:intron |
| GTGAAACCAGAGAAAGCAAA+AGG | 0.534388 | 4_3:-63312435 | Msa0654930:CDS |
| AGATTACCGCGGCGCCATGT+CGG | 0.545977 | 4_3:+63314009 | None:intergenic |
| ATGAAGCACTTAGTCTCAGA+AGG | 0.546935 | 4_3:-63311689 | Msa0654930:CDS |
| TGGGAAAGGTGTTCGTCCAA+TGG | 0.547481 | 4_3:-63310591 | Msa0654930:three_prime_UTR |
| TAACCTCTTTGCATCTTCCT+GGG | 0.550727 | 4_3:+63313868 | None:intergenic |
| GCAGAAGAAGAAACCCTAGC+TGG | 0.551057 | 4_3:+63314441 | None:intergenic |
| AATCAGACAGAGAAGGATGC+AGG | 0.552488 | 4_3:-63314042 | Msa0654930:CDS |
| CTTCTGCTAACCTAACCAAA+TGG | 0.553643 | 4_3:-63314425 | Msa0654930:intron |
| CTTGATGTATGTATTTCGAT+AGG | 0.558655 | 4_3:+63314569 | None:intergenic |
| ATATTGAGAGCTGCTCAAAT+GGG | 0.560634 | 4_3:-63312399 | Msa0654930:CDS |
| AGAAAGACTCATAACACTGC+TGG | 0.563869 | 4_3:-63310997 | Msa0654930:CDS |
| GCAAAGGCAGAATCAGTAGC+AGG | 0.564879 | 4_3:-63311713 | Msa0654930:CDS |
| ACAACCAGCGAGCTTTGCAA+TGG | 0.570774 | 4_3:+63311654 | None:intergenic |
| TACATTGAAATTGAAATTTG+GGG | 0.571505 | 4_3:-63310696 | Msa0654930:three_prime_UTR |
| ATTCCAAACGCGATCTGTGG+TGG | 0.574368 | 4_3:-63314522 | Msa0654930:five_prime_UTR |
| ATGTTAATTGTGGATGGGAA+AGG | 0.577908 | 4_3:-63310605 | Msa0654930:three_prime_UTR |
| TACAATTGTTGCCTTGTGGT+TGG | 0.581505 | 4_3:-63310454 | Msa0654930:three_prime_UTR |
| TGCTGCTTCAGAAGAATCAA+AGG | 0.584371 | 4_3:-63314496 | Msa0654930:five_prime_UTR |
| GTATGTATATGTGTATTTGA+CGG | 0.590904 | 4_3:-63310753 | Msa0654930:three_prime_UTR |
| CTTATTCCAAACGCGATCTG+TGG | 0.591746 | 4_3:-63314525 | Msa0654930:five_prime_UTR |
| ATATTACAATTGTTGCCTTG+TGG | 0.592590 | 4_3:-63310458 | Msa0654930:three_prime_UTR |
| CGCAAATGAATGATTGTGAA+AGG | 0.596323 | 4_3:-63310629 | Msa0654930:three_prime_UTR |
| CAGCGAGCTTTGCAATGGGA+AGG | 0.596395 | 4_3:+63311659 | None:intergenic |
| CCAAACGCGATCTGTGGTGG+TGG | 0.604929 | 4_3:-63314519 | Msa0654930:five_prime_UTR |
| CCCTGAACAACAGAGTGCCC+AGG | 0.607259 | 4_3:-63313885 | Msa0654930:CDS |
| GATACTTTGCAGGACTGCAA+AGG | 0.621375 | 4_3:-63311729 | Msa0654930:intron |
| TTGAAGCAATCAGACAGAGA+AGG | 0.625366 | 4_3:-63314049 | Msa0654930:CDS |
| TAACAAACCTGAACAAACCA+AGG | 0.631969 | 4_3:+63311585 | None:intergenic |
| GAGACGTCGAAGTGTTCTTG+AGG | 0.641596 | 4_3:-63310838 | Msa0654930:CDS |
| AAGGTATGTTAATTGTGGAT+GGG | 0.645261 | 4_3:-63310610 | Msa0654930:three_prime_UTR |
| ACAGCTGTAGTAATGCCTCA+TGG | 0.651417 | 4_3:+63310562 | None:intergenic |
| CTTGCAAGTAGACGTCAATG+AGG | 0.660524 | 4_3:+63310533 | None:intergenic |
| CTGGACTGTGAAATGAATGG+GGG | 0.662807 | 4_3:+63314460 | None:intergenic |
| TGAAGCACTTAGTCTCAGAA+GGG | 0.665315 | 4_3:-63311688 | Msa0654930:CDS |
| GCTGGACTGTGAAATGAATG+GGG | 0.667606 | 4_3:+63314459 | None:intergenic |
| GTGCCCAGGAAGATGCAAAG+AGG | 0.668495 | 4_3:-63313871 | Msa0654930:intron |
| GTCCAATGGCTCATGCCATG+AGG | 0.685436 | 4_3:-63310577 | Msa0654930:three_prime_UTR |
| TATGGGCCGACATGGCGCCG+CGG | 0.687639 | 4_3:-63314015 | Msa0654930:intron |
| TGGACTGTGAAATGAATGGG+GGG | 0.702076 | 4_3:+63314461 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTATATCACAAATTTAA+AGG | + | chr4_3:63312556-63312575 | None:intergenic | 15.0% |
| !!! | TATACATTTAGTTTTTTCTT+TGG | - | chr4_3:63313407-63313426 | Msa0654930:intron | 15.0% |
| !! | TTTATTATTCAAGGAAATAT+GGG | + | chr4_3:63313833-63313852 | None:intergenic | 15.0% |
| !!! | TTTTATTATTCAAGGAAATA+TGG | + | chr4_3:63313834-63313853 | None:intergenic | 15.0% |
| !!! | TTAATAGCTTTTATTATTCA+AGG | + | chr4_3:63313842-63313861 | None:intergenic | 15.0% |
| !! | AAAAAACTGATAAATGAAAA+CGG | + | chr4_3:63314134-63314153 | None:intergenic | 15.0% |
| !! | TTTACATTGAAATTGAAATT+TGG | - | chr4_3:63314337-63314356 | Msa0654930:intron | 15.0% |
| !! | TTACATTGAAATTGAAATTT+GGG | - | chr4_3:63314338-63314357 | Msa0654930:intron | 15.0% |
| !!! | AAATACATACATCAAGATTT+TGG | - | chr4_3:63310473-63310492 | Msa0654930:three_prime_UTR | 20.0% |
| !!! | AATACATACATCAAGATTTT+GGG | - | chr4_3:63310474-63310493 | Msa0654930:three_prime_UTR | 20.0% |
| !! | AAAAGATTGAACAATAAAGA+GGG | + | chr4_3:63310657-63310676 | None:intergenic | 20.0% |
| !! | AAAATCTGCTATTAAGAAAA+TGG | + | chr4_3:63310749-63310768 | None:intergenic | 20.0% |
| !! | TTTAACCATCCTAATAATTA+AGG | + | chr4_3:63310830-63310849 | None:intergenic | 20.0% |
| !!! | AAATAGCAAATTTTGTGTTA+AGG | - | chr4_3:63310847-63310866 | Msa0654930:intron | 20.0% |
| !!! | TTTGTTGTTTATATATCAAC+TGG | - | chr4_3:63310941-63310960 | Msa0654930:intron | 20.0% |
| !! | GAAAAATAATTAATTTAGGG+AGG | - | chr4_3:63311342-63311361 | Msa0654930:intron | 20.0% |
| !! | TAAAAGTCAGATAAAATCTA+AGG | + | chr4_3:63311450-63311469 | None:intergenic | 20.0% |
| !! | ATATATTGTATCTGTATCAT+CGG | - | chr4_3:63311624-63311643 | Msa0654930:CDS | 20.0% |
| !! | ACATCTTATATATTCTATTC+TGG | + | chr4_3:63311725-63311744 | None:intergenic | 20.0% |
| !!! | AAGTTACATTTTTCTATTAC+TGG | + | chr4_3:63311953-63311972 | None:intergenic | 20.0% |
| !!! | GGTTTTTTTAACAACAAAAA+TGG | - | chr4_3:63312253-63312272 | Msa0654930:intron | 20.0% |
| !!! | ATTTTCCTATGAAAATTTGA+AGG | - | chr4_3:63312490-63312509 | Msa0654930:intron | 20.0% |
| !! | TATTTGTTCAATCAATTGTT+GGG | - | chr4_3:63312788-63312807 | Msa0654930:intron | 20.0% |
| !!! | TTTTTATAAATCCTAGATAG+AGG | + | chr4_3:63312825-63312844 | None:intergenic | 20.0% |
| !!! | TCTAGGATTTATAAAAATGT+TGG | - | chr4_3:63312828-63312847 | Msa0654930:intron | 20.0% |
| !! | TCATTGTAAACAAAATAGTA+GGG | + | chr4_3:63312937-63312956 | None:intergenic | 20.0% |
| !! | ATCATTGTAAACAAAATAGT+AGG | + | chr4_3:63312938-63312957 | None:intergenic | 20.0% |
| !! | TTATTATTCAAGGAAATATG+GGG | + | chr4_3:63313832-63313851 | None:intergenic | 20.0% |
| !!! | TTCTTAGTTTCATTTTTGAA+AGG | + | chr4_3:63313870-63313889 | None:intergenic | 20.0% |
| !! | GTTTATGAAATTGAATTCTT+AGG | - | chr4_3:63314008-63314027 | Msa0654930:intron | 20.0% |
| !! | TACATTGAAATTGAAATTTG+GGG | - | chr4_3:63314339-63314358 | Msa0654930:intron | 20.0% |
| !! | ATCAAATATCCAGTTTAATT+TGG | + | chr4_3:63314379-63314398 | None:intergenic | 20.0% |
| ! | GAAAAGATTGAACAATAAAG+AGG | + | chr4_3:63310658-63310677 | None:intergenic | 25.0% |
| !!! | AACCATTTTTAATCTTCGAA+TGG | - | chr4_3:63310686-63310705 | Msa0654930:three_prime_UTR | 25.0% |
| ! | TTCCATTCGAAGATTAAAAA+TGG | + | chr4_3:63310691-63310710 | None:intergenic | 25.0% |
| ! | TATGAACTGCCTTAATTATT+AGG | - | chr4_3:63310818-63310837 | Msa0654930:exon | 25.0% |
| ! | ATATATCAACTGGTAATTTC+AGG | - | chr4_3:63310951-63310970 | Msa0654930:intron | 25.0% |
| ! | AATAACGATAAACGAAACAT+AGG | + | chr4_3:63311066-63311085 | None:intergenic | 25.0% |
| ! | ATATCATAAAGATAAGTGGA+TGG | + | chr4_3:63311270-63311289 | None:intergenic | 25.0% |
| ! | AAGCATATCATAAAGATAAG+TGG | + | chr4_3:63311274-63311293 | None:intergenic | 25.0% |
| !!! | TCCATGTTTTTTTTTTTCGT+TGG | - | chr4_3:63311293-63311312 | Msa0654930:intron | 25.0% |
| ! | TCCAACGAAAAAAAAAAACA+TGG | + | chr4_3:63311297-63311316 | None:intergenic | 25.0% |
| ! | TTTAAATTATGTCTTCAGTC+AGG | - | chr4_3:63311542-63311561 | Msa0654930:intron | 25.0% |
| ! | GATGATACAGATACAATATA+TGG | + | chr4_3:63311625-63311644 | None:intergenic | 25.0% |
| ! | TATATTGTATCTGTATCATC+GGG | - | chr4_3:63311625-63311644 | Msa0654930:CDS | 25.0% |
| ! | AAACCAAACTTAATTCATAG+AGG | - | chr4_3:63311668-63311687 | Msa0654930:CDS | 25.0% |
| ! | TAGTTAACCTATGAGTATAT+CGG | - | chr4_3:63312095-63312114 | Msa0654930:intron | 25.0% |
| ! | TTAACAACAAAAATGGATGA+TGG | - | chr4_3:63312260-63312279 | Msa0654930:intron | 25.0% |
| ! | TTCATACTTATGTAAGTTTG+AGG | + | chr4_3:63312359-63312378 | None:intergenic | 25.0% |
| !! | ATTTTCATAGGAAAATTCAG+AGG | + | chr4_3:63312486-63312505 | None:intergenic | 25.0% |
| !! | TCATTCCTTCAAATTTTCAT+AGG | + | chr4_3:63312498-63312517 | None:intergenic | 25.0% |
| !!! | GAATGAAGTATTTTACTACA+TGG | - | chr4_3:63312512-63312531 | Msa0654930:intron | 25.0% |
| ! | CAATTGATTGAACAAATAGA+TGG | + | chr4_3:63312786-63312805 | None:intergenic | 25.0% |
| ! | CTATTTGTTCAATCAATTGT+TGG | - | chr4_3:63312787-63312806 | Msa0654930:intron | 25.0% |
| !! | ACATAGTTTTCCAATATTAG+AGG | - | chr4_3:63312873-63312892 | Msa0654930:intron | 25.0% |
| !! | TAAACAAAATAGTAGGGTTT+TGG | + | chr4_3:63312931-63312950 | None:intergenic | 25.0% |
| ! | ATACAAGTGAAATAAAGTAC+TGG | - | chr4_3:63313095-63313114 | Msa0654930:intron | 25.0% |
| !! | ATGAGTTGAAACAGATTTAT+TGG | + | chr4_3:63313240-63313259 | None:intergenic | 25.0% |
| !!! | ACATTTAGTTTTTTCTTTGG+AGG | - | chr4_3:63313410-63313429 | Msa0654930:intron | 25.0% |
| ! | CTATAATATGTTCAAATGCA+AGG | - | chr4_3:63313648-63313667 | Msa0654930:CDS | 25.0% |
| ! | TATATCAACACTAACACTAT+TGG | + | chr4_3:63313745-63313764 | None:intergenic | 25.0% |
| !!! | TAGTGTTGATATAAATCTGT+TGG | - | chr4_3:63313752-63313771 | Msa0654930:intron | 25.0% |
| ! | TATTATTCAAGGAAATATGG+GGG | + | chr4_3:63313831-63313850 | None:intergenic | 25.0% |
| ! | TCAATTTCATAAACAAGTCA+TGG | + | chr4_3:63314002-63314021 | None:intergenic | 25.0% |
| ! | TCGTTATCTGAAAAAGTAAA+CGG | + | chr4_3:63314179-63314198 | None:intergenic | 25.0% |
| ! | GTATGTATATGTGTATTTGA+CGG | - | chr4_3:63314282-63314301 | Msa0654930:intron | 25.0% |
| !!! | GGACAAATTATTTTGTAAGT+TGG | - | chr4_3:63314303-63314322 | Msa0654930:intron | 25.0% |
| !!! | AAATATCCAGTTTAATTTGG+TGG | + | chr4_3:63314376-63314395 | None:intergenic | 25.0% |
| CTTGATGTATGTATTTCGAT+AGG | + | chr4_3:63310469-63310488 | None:intergenic | 30.0% | |
| AACAATAAAGAGGGAAATGA+TGG | + | chr4_3:63310648-63310667 | None:intergenic | 30.0% | |
| AACTGCCTTAATTATTAGGA+TGG | - | chr4_3:63310822-63310841 | Msa0654930:exon | 30.0% | |
| ! | TGTGATTTTGTTGATATTGC+AGG | - | chr4_3:63311114-63311133 | Msa0654930:intron | 30.0% |
| ! | GTGATTTTGTTGATATTGCA+GGG | - | chr4_3:63311115-63311134 | Msa0654930:intron | 30.0% |
| GAACCTCTATGAATTAAGTT+TGG | + | chr4_3:63311674-63311693 | None:intergenic | 30.0% | |
| GAAGATAGTACAAGCAAAAT+GGG | + | chr4_3:63311757-63311776 | None:intergenic | 30.0% | |
| AGAAGATAGTACAAGCAAAA+TGG | + | chr4_3:63311758-63311777 | None:intergenic | 30.0% | |
| GACTTTGATATAAAGTCTGA+TGG | + | chr4_3:63311796-63311815 | None:intergenic | 30.0% | |
| ATTTCTACTTACCAAACTAC+AGG | + | chr4_3:63312008-63312027 | None:intergenic | 30.0% | |
| AGTTAACCTATGAGTATATC+GGG | - | chr4_3:63312096-63312115 | Msa0654930:intron | 30.0% | |
| ! | TAGGATGATAGCATTTTGTT+GGG | - | chr4_3:63312186-63312205 | Msa0654930:intron | 30.0% |
| !! | CAAAAATGGATGATGGATTT+AGG | - | chr4_3:63312267-63312286 | Msa0654930:intron | 30.0% |
| AAGTAGGGTTGAAAATTTGA+TGG | - | chr4_3:63312323-63312342 | Msa0654930:intron | 30.0% | |
| ! | TATGTAAGTTTGAGGCAAAA+TGG | + | chr4_3:63312351-63312370 | None:intergenic | 30.0% |
| GTCTTAGTTATTTGTAGACA+TGG | - | chr4_3:63312394-63312413 | Msa0654930:CDS | 30.0% | |
| ! | AGTATTTTACTACATGGAGT+TGG | - | chr4_3:63312518-63312537 | Msa0654930:intron | 30.0% |
| ! | AGATAGCTGAAAAGGTATAT+TGG | - | chr4_3:63312661-63312680 | Msa0654930:intron | 30.0% |
| AAACTATGTTATACCATTCG+TGG | + | chr4_3:63312862-63312881 | None:intergenic | 30.0% | |
| GAACACTAAACCTCTAATAT+TGG | + | chr4_3:63312886-63312905 | None:intergenic | 30.0% | |
| AGACACATGAGTTCTTAATA+TGG | - | chr4_3:63313003-63313022 | Msa0654930:intron | 30.0% | |
| ! | TTCTAAAGAATAACCATGTG+AGG | + | chr4_3:63313043-63313062 | None:intergenic | 30.0% |
| ! | ATATACGATAATAGCTTGCA+AGG | + | chr4_3:63313138-63313157 | None:intergenic | 30.0% |
| !!! | TTTAGTTTTTTCTTTGGAGG+TGG | - | chr4_3:63313413-63313432 | Msa0654930:intron | 30.0% |
| GTTAGTGTGTTTCAAGAATT+TGG | - | chr4_3:63313469-63313488 | Msa0654930:intron | 30.0% | |
| AGTTGTAATTATGACAACCT+TGG | - | chr4_3:63313544-63313563 | Msa0654930:intron | 30.0% | |
| TATGTTCAAATGCAAGGATT+TGG | - | chr4_3:63313654-63313673 | Msa0654930:CDS | 30.0% | |
| GATATAAATCTGTTGGATGA+TGG | - | chr4_3:63313759-63313778 | Msa0654930:intron | 30.0% | |
| TTACAAAATGAAACAGCCTA+GGG | + | chr4_3:63313800-63313819 | None:intergenic | 30.0% | |
| ATTACAAAATGAAACAGCCT+AGG | + | chr4_3:63313801-63313820 | None:intergenic | 30.0% | |
| TATATACAGATATCATGTCC+TGG | - | chr4_3:63313925-63313944 | Msa0654930:intron | 30.0% | |
| ! | TGTGAAAGGTATGTTAATTG+TGG | - | chr4_3:63314420-63314439 | Msa0654930:intron | 30.0% |
| ! | AAAGGTATGTTAATTGTGGA+TGG | - | chr4_3:63314424-63314443 | Msa0654930:intron | 30.0% |
| AAGGTATGTTAATTGTGGAT+GGG | - | chr4_3:63314425-63314444 | Msa0654930:intron | 30.0% | |
| ATATTACAATTGTTGCCTTG+TGG | - | chr4_3:63314577-63314596 | Msa0654930:five_prime_UTR | 30.0% | |
| ! | AAAGAGGGAAATGATGGAAT+GGG | + | chr4_3:63310642-63310661 | None:intergenic | 35.0% |
| ! | TAAAGAGGGAAATGATGGAA+TGG | + | chr4_3:63310643-63310662 | None:intergenic | 35.0% |
| ! | TTTTACATGTTAGCGTTCTG+TGG | - | chr4_3:63310765-63310784 | Msa0654930:three_prime_UTR | 35.0% |
| TAATTAATTTAGGGAGGCAG+AGG | - | chr4_3:63311348-63311367 | Msa0654930:intron | 35.0% | |
| GAGTAAAAACCACGCTATTT+AGG | + | chr4_3:63311865-63311884 | None:intergenic | 35.0% | |
| ! | AATAGCGTGGTTTTTACTCA+AGG | - | chr4_3:63311866-63311885 | Msa0654930:intron | 35.0% |
| ACTTAGAAGACATATGCACA+CGG | + | chr4_3:63312076-63312095 | None:intergenic | 35.0% | |
| ! | GTAGGATGATAGCATTTTGT+TGG | - | chr4_3:63312185-63312204 | Msa0654930:intron | 35.0% |
| ! | AGGATGATAGCATTTTGTTG+GGG | - | chr4_3:63312187-63312206 | Msa0654930:intron | 35.0% |
| AGATACATCTCAGATTAGCA+AGG | + | chr4_3:63312233-63312252 | None:intergenic | 35.0% | |
| ! | TTGCTAATCTGAGATGTATC+TGG | - | chr4_3:63312232-63312251 | Msa0654930:intron | 35.0% |
| !! | AAATGGATGATGGATTTAGG+AGG | - | chr4_3:63312270-63312289 | Msa0654930:intron | 35.0% |
| ATGAATGTACTCAACGAAGT+AGG | - | chr4_3:63312307-63312326 | Msa0654930:intron | 35.0% | |
| TGAATGTACTCAACGAAGTA+GGG | - | chr4_3:63312308-63312327 | Msa0654930:intron | 35.0% | |
| AGGAAAATTCAGAGGTAGAT+TGG | + | chr4_3:63312478-63312497 | None:intergenic | 35.0% | |
| TATATTGAGAGCTGCTCAAA+TGG | - | chr4_3:63312635-63312654 | Msa0654930:intron | 35.0% | |
| ATATTGAGAGCTGCTCAAAT+GGG | - | chr4_3:63312636-63312655 | Msa0654930:intron | 35.0% | |
| ACTTGTGATAAGTACGAGAA+AGG | + | chr4_3:63312707-63312726 | None:intergenic | 35.0% | |
| TCGTACTTATCACAAGTTGT+TGG | - | chr4_3:63312710-63312729 | Msa0654930:intron | 35.0% | |
| CTATTGTCATACGATTTGTG+AGG | - | chr4_3:63312749-63312768 | Msa0654930:intron | 35.0% | |
| TCAGAATCCTATACTAGAGT+AGG | - | chr4_3:63312975-63312994 | Msa0654930:intron | 35.0% | |
| CAGAATCCTATACTAGAGTA+GGG | - | chr4_3:63312976-63312995 | Msa0654930:intron | 35.0% | |
| AGTTCTTAATATGGCACGTT+AGG | - | chr4_3:63313012-63313031 | Msa0654930:intron | 35.0% | |
| ! | ATAATAGCTTGCAAGGAAAG+GGG | + | chr4_3:63313131-63313150 | None:intergenic | 35.0% |
| ! | GATAATAGCTTGCAAGGAAA+GGG | + | chr4_3:63313132-63313151 | None:intergenic | 35.0% |
| ! | TTTTTGTAACGTGAGTTTGC+AGG | + | chr4_3:63313213-63313232 | None:intergenic | 35.0% |
| CAACTCATCTGAATTGAAGT+TGG | - | chr4_3:63313252-63313271 | Msa0654930:intron | 35.0% | |
| TACTTAAGTAGCAACTCAGA+TGG | - | chr4_3:63313284-63313303 | Msa0654930:intron | 35.0% | |
| !! | TGTTTATCCTTGGTTTGTTC+AGG | - | chr4_3:63313443-63313462 | Msa0654930:intron | 35.0% |
| TAACAAACCTGAACAAACCA+AGG | + | chr4_3:63313453-63313472 | None:intergenic | 35.0% | |
| GTGTTTCAAGAATTTGGTAC+TGG | - | chr4_3:63313475-63313494 | Msa0654930:intron | 35.0% | |
| AAAGTCGGAAGATATCAGTT+AGG | - | chr4_3:63313582-63313601 | Msa0654930:intron | 35.0% | |
| TGGTTGAGAATGAGTTGTTT+AGG | - | chr4_3:63313617-63313636 | Msa0654930:intron | 35.0% | |
| TTGAGAATGAGTTGTTTAGG+TGG | - | chr4_3:63313620-63313639 | Msa0654930:intron | 35.0% | |
| !!! | GCAAGGATTTGGTTTTTTGA+TGG | - | chr4_3:63313665-63313684 | Msa0654930:CDS | 35.0% |
| ! | GTTTTACATTGTTTTCCCCT+AGG | - | chr4_3:63313781-63313800 | Msa0654930:intron | 35.0% |
| TACAAAATGAAACAGCCTAG+GGG | + | chr4_3:63313799-63313818 | None:intergenic | 35.0% | |
| CTAATTACTTAATGTCCACC+AGG | + | chr4_3:63313946-63313965 | None:intergenic | 35.0% | |
| ACAAGTCATGGAAGTTATCT+TGG | + | chr4_3:63313990-63314009 | None:intergenic | 35.0% | |
| AGCAAAGCAGACAAAAGTTA+CGG | - | chr4_3:63314080-63314099 | Msa0654930:intron | 35.0% | |
| CGCAAATGAATGATTGTGAA+AGG | - | chr4_3:63314406-63314425 | Msa0654930:intron | 35.0% | |
| ATGTTAATTGTGGATGGGAA+AGG | - | chr4_3:63314430-63314449 | Msa0654930:five_prime_UTR | 35.0% | |
| ! | TGCTGCTTCAGAAGAATCAA+AGG | - | chr4_3:63310539-63310558 | Msa0654930:three_prime_UTR | 40.0% |
| ! | TGAAATGAATGGGGGGTTTT+TGG | + | chr4_3:63310570-63310589 | None:intergenic | 40.0% |
| AGCTGGACTGTGAAATGAAT+GGG | + | chr4_3:63310580-63310599 | None:intergenic | 40.0% | |
| TAGCTGGACTGTGAAATGAA+TGG | + | chr4_3:63310581-63310600 | None:intergenic | 40.0% | |
| ATTCATTTCACAGTCCAGCT+AGG | - | chr4_3:63310580-63310599 | Msa0654930:three_prime_UTR | 40.0% | |
| TTCATTTCACAGTCCAGCTA+GGG | - | chr4_3:63310581-63310600 | Msa0654930:three_prime_UTR | 40.0% | |
| CTTCTGCTAACCTAACCAAA+TGG | - | chr4_3:63310610-63310629 | Msa0654930:three_prime_UTR | 40.0% | |
| TGGGAAGTTACCATTTGGTT+AGG | + | chr4_3:63310623-63310642 | None:intergenic | 40.0% | |
| TGGAATGGGAAGTTACCATT+TGG | + | chr4_3:63310628-63310647 | None:intergenic | 40.0% | |
| TTGAAGCAATCAGACAGAGA+AGG | - | chr4_3:63310986-63311005 | Msa0654930:CDS | 40.0% | |
| ATGACAACGATAGATTACCG+CGG | + | chr4_3:63311040-63311059 | None:intergenic | 40.0% | |
| TAACCTCTTTGCATCTTCCT+GGG | + | chr4_3:63311170-63311189 | None:intergenic | 40.0% | |
| TAAGTGGATGGACAAGTTCT+TGG | + | chr4_3:63311258-63311277 | None:intergenic | 40.0% | |
| AGAGTCTCTTACTCACTCTA+TGG | - | chr4_3:63311920-63311939 | Msa0654930:intron | 40.0% | |
| AAAGGAAAACAAGGGTAGAG+AGG | + | chr4_3:63312048-63312067 | None:intergenic | 40.0% | |
| CGGGGATAAAAGGAAAACAA+GGG | + | chr4_3:63312056-63312075 | None:intergenic | 40.0% | |
| ACGGGGATAAAAGGAAAACA+AGG | + | chr4_3:63312057-63312076 | None:intergenic | 40.0% | |
| TTAGAAGACATATGCACACG+GGG | + | chr4_3:63312074-63312093 | None:intergenic | 40.0% | |
| CTTAGAAGACATATGCACAC+GGG | + | chr4_3:63312075-63312094 | None:intergenic | 40.0% | |
| GATTCACCCGATATACTCAT+AGG | + | chr4_3:63312105-63312124 | None:intergenic | 40.0% | |
| ATCACAGGATAGATTCCCTA+TGG | - | chr4_3:63312122-63312141 | Msa0654930:intron | 40.0% | |
| TTAATGCTAGGAAGTGAAGC+AGG | + | chr4_3:63312160-63312179 | None:intergenic | 40.0% | |
| TGCTTCACTTCCTAGCATTA+AGG | - | chr4_3:63312159-63312178 | Msa0654930:intron | 40.0% | |
| GCTTCACTTCCTAGCATTAA+GGG | - | chr4_3:63312160-63312179 | Msa0654930:intron | 40.0% | |
| CTTCACTTCCTAGCATTAAG+GGG | - | chr4_3:63312161-63312180 | Msa0654930:intron | 40.0% | |
| GTGAAACCAGAGAAAGCAAA+AGG | - | chr4_3:63312600-63312619 | Msa0654930:intron | 40.0% | |
| ! | TCAACACCTTTTGCTTTCTC+TGG | + | chr4_3:63312609-63312628 | None:intergenic | 40.0% |
| AATGGGTCAGATAGCTGAAA+AGG | - | chr4_3:63312653-63312672 | Msa0654930:intron | 40.0% | |
| GTGATAAGTACGAGAAAGGT+TGG | + | chr4_3:63312703-63312722 | None:intergenic | 40.0% | |
| CTAGTTCCCTACTCTAGTAT+AGG | + | chr4_3:63312985-63313004 | None:intergenic | 40.0% | |
| ! | TAATAGCTTGCAAGGAAAGG+GGG | + | chr4_3:63313130-63313149 | None:intergenic | 40.0% |
| ! | CGATAATAGCTTGCAAGGAA+AGG | + | chr4_3:63313133-63313152 | None:intergenic | 40.0% |
| AACTCAGATGGATACTTTGC+AGG | - | chr4_3:63313296-63313315 | Msa0654930:intron | 40.0% | |
| ! | ATGAAGCACTTAGTCTCAGA+AGG | - | chr4_3:63313346-63313365 | Msa0654930:intron | 40.0% |
| ! | TGAAGCACTTAGTCTCAGAA+GGG | - | chr4_3:63313347-63313366 | Msa0654930:intron | 40.0% |
| !!! | AGTTTTTTCTTTGGAGGTGG+AGG | - | chr4_3:63313416-63313435 | Msa0654930:intron | 40.0% |
| !! | TGGAGGTGTTTGTTTATCCT+TGG | - | chr4_3:63313433-63313452 | Msa0654930:intron | 40.0% |
| TTGTGCAACTATCCATTCCA+AGG | + | chr4_3:63313501-63313520 | None:intergenic | 40.0% | |
| TTGACAGTGATGCTGAAAGT+CGG | - | chr4_3:63313567-63313586 | Msa0654930:intron | 40.0% | |
| ATTCAAGGAAATATGGGGGT+GGG | + | chr4_3:63313827-63313846 | None:intergenic | 40.0% | |
| TATTCAAGGAAATATGGGGG+TGG | + | chr4_3:63313828-63313847 | None:intergenic | 40.0% | |
| ATACAGATATCATGTCCTGG+TGG | - | chr4_3:63313928-63313947 | Msa0654930:intron | 40.0% | |
| AGAAAGACTCATAACACTGC+TGG | - | chr4_3:63314038-63314057 | Msa0654930:CDS | 40.0% | |
| !!! | CTTTTGTCTGCTTTGCTGTT+TGG | + | chr4_3:63314077-63314096 | None:intergenic | 40.0% |
| !! | ATCCAGTTTAATTTGGTGGC+AGG | + | chr4_3:63314372-63314391 | None:intergenic | 40.0% |
| ! | CGAGTATTTTATGCAGAGCA+AGG | - | chr4_3:63314530-63314549 | Msa0654930:five_prime_UTR | 40.0% |
| TACAATTGTTGCCTTGTGGT+TGG | - | chr4_3:63314581-63314600 | Msa0654930:five_prime_UTR | 40.0% | |
| CTTATTCCAAACGCGATCTG+TGG | - | chr4_3:63310510-63310529 | Msa0654930:three_prime_UTR | 45.0% | |
| TGGACTGTGAAATGAATGGG+GGG | + | chr4_3:63310577-63310596 | None:intergenic | 45.0% | |
| CTGGACTGTGAAATGAATGG+GGG | + | chr4_3:63310578-63310597 | None:intergenic | 45.0% | |
| GCTGGACTGTGAAATGAATG+GGG | + | chr4_3:63310579-63310598 | None:intergenic | 45.0% | |
| !! | TCGAATGGAAAAAGCGTCGA+TGG | - | chr4_3:63310701-63310720 | Msa0654930:three_prime_UTR | 45.0% |
| TGTCTGATTGCTTCAAGCTC+AGG | + | chr4_3:63310982-63311001 | None:intergenic | 45.0% | |
| AATCAGACAGAGAAGGATGC+AGG | - | chr4_3:63310993-63311012 | Msa0654930:CDS | 45.0% | |
| AGAAGGATGCAGGAGCTTAT+GGG | - | chr4_3:63311003-63311022 | Msa0654930:CDS | 45.0% | |
| CTAACCTCTTTGCATCTTCC+TGG | + | chr4_3:63311171-63311190 | None:intergenic | 45.0% | |
| GAGACTTCGTACCTGTAGTT+TGG | - | chr4_3:63311994-63312013 | Msa0654930:intron | 45.0% | |
| CATATGCACACGGGGATAAA+AGG | + | chr4_3:63312066-63312085 | None:intergenic | 45.0% | |
| GAGTATATCGGGTGAATCAC+AGG | - | chr4_3:63312107-63312126 | Msa0654930:intron | 45.0% | |
| CAGGATAGATTCCCTATGGT+TGG | - | chr4_3:63312126-63312145 | Msa0654930:intron | 45.0% | |
| !! | AGGTATCGAGACCAACCATA+GGG | + | chr4_3:63312140-63312159 | None:intergenic | 45.0% |
| ! | TGATAGCATTTTGTTGGGGC+TGG | - | chr4_3:63312191-63312210 | Msa0654930:intron | 45.0% |
| TGCAGTTGCTCGAATTGCTT+TGG | - | chr4_3:63312578-63312597 | Msa0654930:intron | 45.0% | |
| ATCAATTGTTGGGCCGAGAA+AGG | - | chr4_3:63312798-63312817 | Msa0654930:intron | 45.0% | |
| CCTAGATAGAGGACCTTTCT+CGG | + | chr4_3:63312814-63312833 | None:intergenic | 45.0% | |
| GTTGGCAACAATTCCACGAA+TGG | - | chr4_3:63312846-63312865 | Msa0654930:intron | 45.0% | |
| ACGTTAGGTCTTACCTCACA+TGG | - | chr4_3:63313027-63313046 | Msa0654930:intron | 45.0% | |
| TTGCAAGGAAAGGGGGAAAA+AGG | + | chr4_3:63313123-63313142 | None:intergenic | 45.0% | |
| GATACTTTGCAGGACTGCAA+AGG | - | chr4_3:63313306-63313325 | Msa0654930:intron | 45.0% | |
| !! | CAAGAATTTGGTACTGGCCT+TGG | - | chr4_3:63313481-63313500 | Msa0654930:intron | 45.0% |
| !! | ATTTGGTACTGGCCTTGGAA+TGG | - | chr4_3:63313486-63313505 | Msa0654930:intron | 45.0% |
| TTCAGCATCACTGTCAACCA+AGG | + | chr4_3:63313564-63313583 | None:intergenic | 45.0% | |
| GATATCAGTTAGGCAGTCTG+AGG | - | chr4_3:63313592-63313611 | Msa0654930:intron | 45.0% | |
| GACTTGCGTGATCCAATTTC+AGG | - | chr4_3:63313689-63313708 | Msa0654930:intron | 45.0% | |
| ! | GTGATCCAATTTCAGGTCAC+TGG | - | chr4_3:63313696-63313715 | Msa0654930:intron | 45.0% |
| ! | ATCCAATTTCAGGTCACTGG+AGG | - | chr4_3:63313699-63313718 | Msa0654930:intron | 45.0% |
| AACCTCCAGTGACCTGAAAT+TGG | + | chr4_3:63313704-63313723 | None:intergenic | 45.0% | |
| TTCAAGGAAATATGGGGGTG+GGG | + | chr4_3:63313826-63313845 | None:intergenic | 45.0% | |
| !! | GAGGATGATGATTAGCTTCG+CGG | - | chr4_3:63314216-63314235 | Msa0654930:intron | 45.0% |
| TGCCTGCCACCAAATTAAAC+TGG | - | chr4_3:63314367-63314386 | Msa0654930:intron | 45.0% | |
| ACAGCTGTAGTAATGCCTCA+TGG | + | chr4_3:63314476-63314495 | None:intergenic | 45.0% | |
| CTTGCAAGTAGACGTCAATG+AGG | + | chr4_3:63314505-63314524 | None:intergenic | 45.0% | |
| !! | AATTGAAAAATAATTAATTT+AGG | - | chr4_3:63311338-63311357 | Msa0654930:intron | 5.0% |
| !! | ATTGAAAAATAATTAATTTA+GGG | - | chr4_3:63311339-63311358 | Msa0654930:intron | 5.0% |
| !! | ACATAATTTAAATATTAATT+AGG | + | chr4_3:63311534-63311553 | None:intergenic | 5.0% |
| !! | ATAAATAATATTAGTATATT+TGG | - | chr4_3:63311817-63311836 | Msa0654930:intron | 5.0% |
| !! | TAAATAATATTAGTATATTT+GGG | - | chr4_3:63311818-63311837 | Msa0654930:intron | 5.0% |
| ATTCCAAACGCGATCTGTGG+TGG | - | chr4_3:63310513-63310532 | Msa0654930:three_prime_UTR | 50.0% | |
| GCAGAAGAAGAAACCCTAGC+TGG | + | chr4_3:63310597-63310616 | None:intergenic | 50.0% | |
| GAGAAGGATGCAGGAGCTTA+TGG | - | chr4_3:63311002-63311021 | Msa0654930:CDS | 50.0% | |
| GCACTCTGTTGTTCAGGGTT+TGG | + | chr4_3:63311148-63311167 | None:intergenic | 50.0% | |
| CTCACTGTGCCTAAATAGCG+TGG | - | chr4_3:63311853-63311872 | Msa0654930:intron | 50.0% | |
| !! | CAGGTATCGAGACCAACCAT+AGG | + | chr4_3:63312141-63312160 | None:intergenic | 50.0% |
| ! | TTCCTAGCATTAAGGGGCGT+AGG | - | chr4_3:63312167-63312186 | Msa0654930:intron | 50.0% |
| ATCCTACGCCCCTTAATGCT+AGG | + | chr4_3:63312172-63312191 | None:intergenic | 50.0% | |
| CCGAGAAAGGTCCTCTATCT+AGG | - | chr4_3:63312811-63312830 | Msa0654930:intron | 50.0% | |
| AAGATGAGTCTGTGCTGCGA+TGG | - | chr4_3:63313167-63313186 | Msa0654930:intron | 50.0% | |
| AGATGAGTCTGTGCTGCGAT+GGG | - | chr4_3:63313168-63313187 | Msa0654930:intron | 50.0% | |
| GCAAAGGCAGAATCAGTAGC+AGG | - | chr4_3:63313322-63313341 | Msa0654930:intron | 50.0% | |
| CAACCAGCGAGCTTTGCAAT+GGG | + | chr4_3:63313383-63313402 | None:intergenic | 50.0% | |
| ACAACCAGCGAGCTTTGCAA+TGG | + | chr4_3:63313384-63313403 | None:intergenic | 50.0% | |
| ! | ATTGCAAAGCTCGCTGGTTG+TGG | - | chr4_3:63313383-63313402 | Msa0654930:intron | 50.0% |
| ! | TTGCAAAGCTCGCTGGTTGT+GGG | - | chr4_3:63313384-63313403 | Msa0654930:intron | 50.0% |
| TCAAGGAAATATGGGGGTGG+GGG | + | chr4_3:63313825-63313844 | None:intergenic | 50.0% | |
| ! | GAGACGTCGAAGTGTTCTTG+AGG | - | chr4_3:63314197-63314216 | Msa0654930:intron | 50.0% |
| !! | TGGGAAAGGTGTTCGTCCAA+TGG | - | chr4_3:63314444-63314463 | Msa0654930:five_prime_UTR | 50.0% |
| CCTGGGCACTCTGTTGTTCA+GGG | + | chr4_3:63311153-63311172 | None:intergenic | 55.0% | |
| TCCTGGGCACTCTGTTGTTC+AGG | + | chr4_3:63311154-63311173 | None:intergenic | 55.0% | |
| GTGCCCAGGAAGATGCAAAG+AGG | - | chr4_3:63311164-63311183 | Msa0654930:intron | 55.0% | |
| TGTGCTGCGATGGGAAACAC+TGG | - | chr4_3:63313177-63313196 | Msa0654930:intron | 55.0% | |
| CTGCGATGGGAAACACTGGA+AGG | - | chr4_3:63313181-63313200 | Msa0654930:intron | 55.0% | |
| CAGCGAGCTTTGCAATGGGA+AGG | + | chr4_3:63313379-63313398 | None:intergenic | 55.0% | |
| CTTCCCATTGCAAAGCTCGC+TGG | - | chr4_3:63313377-63313396 | Msa0654930:intron | 55.0% | |
| ! | CAGTTAGGCAGTCTGAGGCT+TGG | - | chr4_3:63313597-63313616 | Msa0654930:intron | 55.0% |
| TAGCTTCGCGGTCTCTTAGC+TGG | - | chr4_3:63314228-63314247 | Msa0654930:intron | 55.0% | |
| GTCCAATGGCTCATGCCATG+AGG | - | chr4_3:63314458-63314477 | Msa0654930:five_prime_UTR | 55.0% | |
| TGCCTCATGGCATGAGCCAT+TGG | + | chr4_3:63314463-63314482 | None:intergenic | 55.0% | |
| CCACCACCACAGATCGCGTT+TGG | + | chr4_3:63310519-63310538 | None:intergenic | 60.0% | |
| CCAAACGCGATCTGTGGTGG+TGG | - | chr4_3:63310516-63310535 | Msa0654930:three_prime_UTR | 60.0% | |
| CAGGAGCTTATGGGCCGACA+TGG | - | chr4_3:63311012-63311031 | Msa0654930:intron | 60.0% | |
| AGATTACCGCGGCGCCATGT+CGG | + | chr4_3:63311029-63311048 | None:intergenic | 60.0% | |
| ! | CCCTGAACAACAGAGTGCCC+AGG | - | chr4_3:63311150-63311169 | Msa0654930:intron | 60.0% |
| TATGGGCCGACATGGCGCCG+CGG | - | chr4_3:63311020-63311039 | Msa0654930:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 63310452 | 63314605 | 63310452 | ID=Msa0654930;Name=Msa0654930 |
| chr4_3 | mRNA | 63310452 | 63314605 | 63310452 | ID=Msa0654930-mRNA-1;Parent=Msa0654930;Name=Msa0654930-mRNA-1;_AED=0.13;_eAED=0.13;_QI=177|0.71|0.87|0.87|0.71|0.87|8|375|178 |
| chr4_3 | exon | 63310452 | 63310865 | 63310452 | ID=Msa0654930-mRNA-1:exon:17797;Parent=Msa0654930-mRNA-1 |
| chr4_3 | exon | 63310956 | 63311027 | 63310956 | ID=Msa0654930-mRNA-1:exon:17796;Parent=Msa0654930-mRNA-1 |
| chr4_3 | exon | 63311593 | 63311739 | 63311593 | ID=Msa0654930-mRNA-1:exon:17795;Parent=Msa0654930-mRNA-1 |
| chr4_3 | exon | 63312383 | 63312474 | 63312383 | ID=Msa0654930-mRNA-1:exon:17794;Parent=Msa0654930-mRNA-1 |
| chr4_3 | exon | 63313633 | 63313697 | 63313633 | ID=Msa0654930-mRNA-1:exon:17793;Parent=Msa0654930-mRNA-1 |
| chr4_3 | exon | 63313872 | 63313921 | 63313872 | ID=Msa0654930-mRNA-1:exon:17792;Parent=Msa0654930-mRNA-1 |
| chr4_3 | exon | 63314016 | 63314084 | 63314016 | ID=Msa0654930-mRNA-1:exon:17791;Parent=Msa0654930-mRNA-1 |
| chr4_3 | exon | 63314426 | 63314605 | 63314426 | ID=Msa0654930-mRNA-1:exon:17790;Parent=Msa0654930-mRNA-1 |
| chr4_3 | five_prime_UTR | 63314429 | 63314605 | 63314429 | ID=Msa0654930-mRNA-1:five_prime_utr;Parent=Msa0654930-mRNA-1 |
| chr4_3 | CDS | 63314426 | 63314428 | 63314426 | ID=Msa0654930-mRNA-1:cds;Parent=Msa0654930-mRNA-1 |
| chr4_3 | CDS | 63314016 | 63314084 | 63314016 | ID=Msa0654930-mRNA-1:cds;Parent=Msa0654930-mRNA-1 |
| chr4_3 | CDS | 63313872 | 63313921 | 63313872 | ID=Msa0654930-mRNA-1:cds;Parent=Msa0654930-mRNA-1 |
| chr4_3 | CDS | 63313633 | 63313697 | 63313633 | ID=Msa0654930-mRNA-1:cds;Parent=Msa0654930-mRNA-1 |
| chr4_3 | CDS | 63312383 | 63312474 | 63312383 | ID=Msa0654930-mRNA-1:cds;Parent=Msa0654930-mRNA-1 |
| chr4_3 | CDS | 63311593 | 63311739 | 63311593 | ID=Msa0654930-mRNA-1:cds;Parent=Msa0654930-mRNA-1 |
| chr4_3 | CDS | 63310956 | 63311027 | 63310956 | ID=Msa0654930-mRNA-1:cds;Parent=Msa0654930-mRNA-1 |
| chr4_3 | CDS | 63310827 | 63310865 | 63310827 | ID=Msa0654930-mRNA-1:cds;Parent=Msa0654930-mRNA-1 |
| chr4_3 | three_prime_UTR | 63310452 | 63310826 | 63310452 | ID=Msa0654930-mRNA-1:three_prime_utr;Parent=Msa0654930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
