AlfalfaGEDB | Msa0951450

M. sativa cultivar zhongmu-4 / Msa0951450

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0951450	XP_004501773.3	53.073	358	126	6	1	325	136	484	2.75e-98	308

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0951450	sp\|Q8L7A0\|TAUE3_ARATH	89.773	88	9	0	1	88	127	214	1.59e-47	169
Msa0951450	sp\|Q8L7A0\|TAUE3_ARATH	78.302	106	23	0	220	325	371	476	5.98e-46	165

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa0951450	0.804469	2.128619e-49	-8.615850e-47
Msa0039330	Msa0951450	0.825026	5.866665e-54	-8.615850e-47
Msa0085290	Msa0951450	0.806957	6.390816e-50	-8.615850e-47
Msa0095560	Msa0951450	0.806866	6.681956e-50	-8.615850e-47
Msa0112750	Msa0951450	0.814704	1.345129e-51	-8.615850e-47
Msa0157290	Msa0951450	0.802772	4.786168e-49	-8.615850e-47
Msa0170140	Msa0951450	0.806498	7.991035e-50	-8.615850e-47
Msa0173990	Msa0951450	0.808188	3.501299e-50	-8.615850e-47
Msa0178930	Msa0951450	0.819885	9.182539e-53	-8.615850e-47
Msa0210450	Msa0951450	0.828493	8.720414e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0951450	MtrunA17_Chr8g0373471	47.191	356	147	6	1	324	122	468	1.47e-92	283
Msa0951450	MtrunA17_Chr5g0403901	45.915	355	143	6	1	321	129	468	1.35e-81	255
Msa0951450	MtrunA17_Chr7g0265481	39.560	364	163	10	1	321	110	459	7.46e-73	232
Msa0951450	MtrunA17_Chr3g0139541	92.453	106	8	0	220	325	365	470	4.22e-59	196
Msa0951450	MtrunA17_Chr3g0139541	98.864	88	1	0	1	88	126	213	1.40e-53	182
Msa0951450	MtrunA17_Chr3g0139541	86.486	37	5	0	148	184	365	401	1.46e-11	65.1
Msa0951450	MtrunA17_Chr8g0380191	64.423	104	32	1	220	323	218	316	2.96e-38	138
Msa0951450	MtrunA17_Chr8g0380191	66.292	89	30	0	1	89	10	98	4.11e-37	135
Msa0951450	MtrunA17_Chr8g0380191	90.323	31	3	0	148	178	218	248	9.11e-11	62.0
Msa0951450	MtrunA17_Chr8g0380211	67.308	104	34	0	220	323	374	477	4.83e-37	138

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0951450	AT2G25737.2	89.773	88	9	0	1	88	127	214	3.25e-49	168
Msa0951450	AT2G25737.1	89.773	88	9	0	1	88	127	214	1.61e-48	169
Msa0951450	AT2G25737.1	78.302	106	23	0	220	325	371	476	6.08e-47	165
Msa0951450	AT2G25737.1	91.176	34	3	0	148	181	371	404	3.78e-11	64.3
Msa0951450	AT2G36630.1	61.364	88	34	0	1	88	107	194	1.43e-34	131
Msa0951450	AT2G36630.1	49.020	102	52	0	220	321	355	456	5.33e-27	110
Msa0951450	AT1G11540.1	45.556	90	48	1	1	89	19	108	1.62e-16	79.7
Msa0951450	AT1G11540.2	45.556	90	48	1	1	89	102	191	2.77e-16	79.7
Msa0951450	AT1G61740.1	43.333	90	50	1	1	89	106	195	9.64e-16	78.2
Msa0951450	AT4G21260.1	42.188	64	37	0	25	88	112	175	7.84e-12	66.2

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Find 70 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGATTTCCGGTTCCTTA+TGG	0.322506	6_3:+42258188	Msa0951450:CDS
AAATCCCATATATTCATGAT+CGG	0.571395	6_3:-42259767	None:intergenic
AATATAGTGACAAGCCAATC+AGG	0.423808	6_3:-42257698	None:intergenic
ACCAAATGTTCCCATTGAAA+AGG	0.489833	6_3:+42258458	Msa0951450:CDS
ACGATTTACATACTGCAGAT+TGG	0.458976	6_3:-42259096	None:intergenic
ACTACTATTGCAGCCTTGGT+TGG	0.474031	6_3:+42259410	Msa0951450:CDS
AGAAGGCTGATCATCCTATT+TGG	0.303986	6_3:+42259446	Msa0951450:CDS
AGGCTGCAATAGTAGTCACC+AGG	0.612521	6_3:-42259403	None:intergenic
AGGGCTTGAGACATGGAATA+AGG	0.370713	6_3:+42257822	Msa0951450:CDS
AGGTAGGATGTCTCAGCCTG+AGG	0.637706	6_3:-42257580	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTCAACCTATGTTAATGCT+TGG	+	chr6_3:42257641-42257660	Msa0951450:CDS	30.0%
CAACAAAAATGTCTAATTCC+TGG	-	chr6_3:42257748-42257767	None:intergenic	30.0%
TGGTTAGTATGATTCCTAAT+TGG	+	chr6_3:42258073-42258092	Msa0951450:intron	30.0%
AGTATGATTCCTAATTGGAT+CGG	+	chr6_3:42258078-42258097	Msa0951450:intron	30.0%
TCTGACATCAGGAAAAATAA+TGG	-	chr6_3:42258382-42258401	None:intergenic	30.0%
TTGTCCTTCTAATCTAATGA+CGG	-	chr6_3:42258616-42258635	None:intergenic	30.0%
AATGTATATTGGAAGGAGTT+TGG	+	chr6_3:42258704-42258723	Msa0951450:intron	30.0%
ATGTATATTGGAAGGAGTTT+GGG	+	chr6_3:42258705-42258724	Msa0951450:intron	30.0%
ACAAGTAAATTTACCTCTTG+TGG	+	chr6_3:42258939-42258958	Msa0951450:intron	30.0%
AGCATGATTCCTAATTGAAT+CGG	+	chr6_3:42259152-42259171	Msa0951450:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	42257535	42259813	42257535	ID=Msa0951450;Name=Msa0951450
chr6_3	mRNA	42257535	42259813	42257535	ID=Msa0951450-mRNA-1;Parent=Msa0951450;Name=Msa0951450-mRNA-1;_AED=0.14;_eAED=0.21;_QI=7\|0.12\|0.11\|0.88\|0.37\|0.44\|9\|0\|325
chr6_3	exon	42257535	42257740	42257535	ID=Msa0951450-mRNA-1:exon:9908;Parent=Msa0951450-mRNA-1
chr6_3	exon	42257797	42257902	42257797	ID=Msa0951450-mRNA-1:exon:9909;Parent=Msa0951450-mRNA-1
chr6_3	exon	42257939	42258074	42257939	ID=Msa0951450-mRNA-1:exon:9910;Parent=Msa0951450-mRNA-1
chr6_3	exon	42258116	42258209	42258116	ID=Msa0951450-mRNA-1:exon:9911;Parent=Msa0951450-mRNA-1
chr6_3	exon	42258433	42258498	42258433	ID=Msa0951450-mRNA-1:exon:9912;Parent=Msa0951450-mRNA-1
chr6_3	exon	42259093	42259148	42259093	ID=Msa0951450-mRNA-1:exon:9913;Parent=Msa0951450-mRNA-1
chr6_3	exon	42259190	42259283	42259190	ID=Msa0951450-mRNA-1:exon:9914;Parent=Msa0951450-mRNA-1
chr6_3	exon	42259390	42259530	42259390	ID=Msa0951450-mRNA-1:exon:9915;Parent=Msa0951450-mRNA-1
chr6_3	exon	42259731	42259813	42259731	ID=Msa0951450-mRNA-1:exon:9916;Parent=Msa0951450-mRNA-1
chr6_3	five_prime_UTR	42257535	42257541	42257535	ID=Msa0951450-mRNA-1:five_prime_utr;Parent=Msa0951450-mRNA-1
chr6_3	CDS	42257542	42257740	42257542	ID=Msa0951450-mRNA-1:cds;Parent=Msa0951450-mRNA-1
chr6_3	CDS	42257797	42257902	42257797	ID=Msa0951450-mRNA-1:cds;Parent=Msa0951450-mRNA-1
chr6_3	CDS	42257939	42258074	42257939	ID=Msa0951450-mRNA-1:cds;Parent=Msa0951450-mRNA-1
chr6_3	CDS	42258116	42258209	42258116	ID=Msa0951450-mRNA-1:cds;Parent=Msa0951450-mRNA-1
chr6_3	CDS	42258433	42258498	42258433	ID=Msa0951450-mRNA-1:cds;Parent=Msa0951450-mRNA-1
chr6_3	CDS	42259093	42259148	42259093	ID=Msa0951450-mRNA-1:cds;Parent=Msa0951450-mRNA-1
chr6_3	CDS	42259190	42259283	42259190	ID=Msa0951450-mRNA-1:cds;Parent=Msa0951450-mRNA-1
chr6_3	CDS	42259390	42259530	42259390	ID=Msa0951450-mRNA-1:cds;Parent=Msa0951450-mRNA-1
chr6_3	CDS	42259731	42259813	42259731	ID=Msa0951450-mRNA-1:cds;Parent=Msa0951450-mRNA-1

Gene Sequence

>Msa0951450

ATGGTCATGGGTGCAGCTCTGTCAACTGTCTACTACAACCTCAGGCTGAGACATCCTACCTTGGATATGCCAATCATTGACTATGATTTGGCACTTCTCATTCAACCTATGTTAATGCTTGGAATCAGCATTGGAGTGGTCTTCAACGTTGTATTTCCTGATTGGCTTGTCACTATATTGCTTATTGTTCTTTTCTTAGGCACATCAACAAAGGCATTCTTTAAAGGGCTTGAGACATGGAATAAGGAAACCATAATGAAAAAGGTCCCATTTAATATATCATGTAGTACTATAATATTTTCACTTCGGTGGATTGCTGGGACTAGGGGGCAGATTTGTTATGGGTCCGCTTTTTCTAGAGCTAGGGGTCCCTTCTCAATCGAGAGTTTCAAACTGCGGTATATAAATCGCCCTTCTCTTATCCTGATCATCAAACAGTTGGTGTCAAGCGCCACGACCACTTTTGCAATGACATTCTCCTCGTCTATGTCTGTTGTAGAATACTATTTGCTGAAACGATTTCCGGTTCCTTATGGAGAATATAAAGCTCTTCCAACTGGACCAAATGTTCCCATTGAAAAGGAAAACGACGTACAAGAGAATCCCAATCTGCAGTATGTAAATCGTGCTTCTCTTATCCTGATCATCAAACAGTTGGTGTCAAGCGCCACAACCACTTTCGCAATGACATTCTCCTCGTCTATGTCTGTTGTGGAATACTACTTGCTGAAACAATTTCCGCTTCCTTATTCTCTTTACTTGAGCCTGGTGACTACTATTGCAGCCTTGGTTGGACAACATATTGTGAGAAGGCTGATCATCCTATTTGGAAGAGCATCTCTCATCATCTTTATTCTAGCTGGCACAATATTTATCAGTGCAATCTCACTAGGTGGAGTTGACATTTCAAATACGGTGCACAAGATTGCCGATCATGAATATATGGGATTTGAGAATATCTGCAAGTACGGATCA

Protein sequence

>Msa0951450

MVMGAALSTVYYNLRLRHPTLDMPIIDYDLALLIQPMLMLGISIGVVFNVVFPDWLVTILLIVLFLGTSTKAFFKGLETWNKETIMKKVPFNISCSTIIFSLRWIAGTRGQICYGSAFSRARGPFSIESFKLRYINRPSLILIIKQLVSSATTTFAMTFSSSMSVVEYYLLKRFPVPYGEYKALPTGPNVPIEKENDVQENPNLQYVNRASLILIIKQLVSSATTTFAMTFSSSMSVVEYYLLKQFPLPYSLYLSLVTTIAALVGQHIVRRLIILFGRASLIIFILAGTIFISAISLGGVDISNTVHKIADHEYMGFENICKYGS