AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0997980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0997980 MtrunA17_Chr6g0483651 89.944 179 17 1 1 178 1 179 1.83e-86 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0997980 AT3G18240.2 35.625 160 90 5 1 148 1 159 3.82e-11 61.2
Msa0997980 AT3G18240.1 35.625 160 90 5 1 148 1 159 3.82e-11 61.2

Find 41 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACAATCACTAGATGATT+TGG 0.308291 6_4:+78136435 Msa0997980:CDS
TCATTAGCATGTGGAATAGT+AGG 0.396515 6_4:-78136397 None:intergenic
TTGTAGAGAGAGAGAATTGA+AGG 0.399375 6_4:-78136334 None:intergenic
AGAGACGAATACGGCGTGCT+TGG 0.419965 6_4:-78136291 None:intergenic
AATTGAAGGTGAAGATTTGA+AGG 0.420520 6_4:-78136320 None:intergenic
AAATCCTGATCAGCATCTAT+TGG 0.420664 6_4:-78137478 None:intergenic
GATTTGATGAGGGATATTCT+AGG 0.428796 6_4:+78137496 Msa0997980:CDS
GAAGCCAATAGATGCTGATC+AGG 0.453231 6_4:+78137474 Msa0997980:CDS
TGCAATTCCAGAAGTCTTTG+AGG 0.475249 6_4:+78137426 Msa0997980:CDS
AATACTGCCTCAAAGACTTC+TGG 0.481399 6_4:-78137433 None:intergenic
GGTAGGGAAGGGAACAGATT+CGG 0.493759 6_4:+78137549 Msa0997980:CDS
CGAGTTTGATTCTGATTCAG+AGG 0.495337 6_4:+78137597 Msa0997980:CDS
AGTATTGCAGAGGTATTTGA+AGG 0.515107 6_4:+78137450 Msa0997980:CDS
AGGTGTGAGAGAGACGAATA+CGG 0.519422 6_4:-78136300 None:intergenic
TTGGAAGACATAAGCAATGA+AGG 0.528909 6_4:+78136454 Msa0997980:CDS
ATTTGATGAGGGATATTCTA+GGG 0.530573 6_4:+78137497 Msa0997980:CDS
GCATGTGGAATAGTAGGAGG+TGG 0.531182 6_4:-78136391 None:intergenic
GATGAGGGATATTCTAGGGA+AGG 0.531728 6_4:+78137501 Msa0997980:CDS
TGACGATGATGAGGTAGGGA+AGG 0.546633 6_4:+78137537 Msa0997980:CDS
TTCATGTTAAAGAGTTGAAG+AGG 0.552220 6_4:+78137371 Msa0997980:intron
ATGAGGGATATTCTAGGGAA+GGG 0.555830 6_4:+78137502 Msa0997980:CDS
TGTGGAATAGTAGGAGGTGG+AGG 0.555918 6_4:-78136388 None:intergenic
TCGAATGACGATGATGAGGT+AGG 0.558012 6_4:+78137532 Msa0997980:CDS
AGTTGAAGAGGCGTGTTGCA+AGG 0.561310 6_4:+78137383 Msa0997980:CDS
CGAATGACGATGATGAGGTA+GGG 0.565259 6_4:+78137533 Msa0997980:CDS
GAGTTTGATTCTGATTCAGA+GGG 0.569881 6_4:+78137598 Msa0997980:CDS
TGCTGATCAGGATTTGATGA+GGG 0.581135 6_4:+78137486 Msa0997980:CDS
ATGCTGATCAGGATTTGATG+AGG 0.589069 6_4:+78137485 Msa0997980:CDS
GACGATGATGAGGTAGGGAA+GGG 0.607551 6_4:+78137538 Msa0997980:CDS
AGATTCTTCTCATTAGCATG+TGG 0.610398 6_4:-78136406 None:intergenic
AGATTCGGAAGACGATGATG+AGG 0.621691 6_4:+78137564 Msa0997980:CDS
TATTGCAGAGGTATTTGAAG+GGG 0.623018 6_4:+78137452 Msa0997980:CDS
TTAGCATGTGGAATAGTAGG+AGG 0.639344 6_4:-78136394 None:intergenic
TGAGGGATATTCTAGGGAAG+GGG 0.640498 6_4:+78137503 Msa0997980:CDS
GTATTGCAGAGGTATTTGAA+GGG 0.641068 6_4:+78137451 Msa0997980:CDS
CTAGAAGAGAAGAACGAAGT+GGG 0.641732 6_4:-78136358 None:intergenic
TCTTTGAGGCAGTATTGCAG+AGG 0.647544 6_4:+78137440 Msa0997980:CDS
CGTGTTGCAAGGCTTCGAGA+AGG 0.648821 6_4:+78137394 Msa0997980:CDS
AGAGTCGAATGACGATGATG+AGG 0.661123 6_4:+78137528 Msa0997980:CDS
GTGGAATAGTAGGAGGTGGA+GGG 0.661327 6_4:-78136387 None:intergenic
ACTAGAAGAGAAGAACGAAG+TGG 0.662176 6_4:-78136359 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTAAAAAAATCCAAAA+AGG - chr6_4:78136835-78136854 None:intergenic 10.0%
!!! TTTTTGGATTTTTTTAAAAT+TGG + chr6_4:78136834-78136853 Msa0997980:intron 10.0%
!!! TATATTTTAATAGTCAAAAT+GGG - chr6_4:78137291-78137310 None:intergenic 10.0%
!!! ATATATTTTAATAGTCAAAA+TGG - chr6_4:78137292-78137311 None:intergenic 10.0%
!!! TATATTGAATTAGTATTTTT+TGG + chr6_4:78137307-78137326 Msa0997980:intron 10.0%
!!! ATTTTTTGGTTTTTTAAATT+TGG + chr6_4:78137321-78137340 Msa0997980:intron 10.0%
!!! AATTTTAAAAAAATCCAAAA+AGG - chr6_4:78136835-78136854 None:intergenic 10.0%
!!! TTTTTGGATTTTTTTAAAAT+TGG + chr6_4:78136834-78136853 Msa0997980:intron 10.0%
!!! TATATTTTAATAGTCAAAAT+GGG - chr6_4:78137291-78137310 None:intergenic 10.0%
!!! ATATATTTTAATAGTCAAAA+TGG - chr6_4:78137292-78137311 None:intergenic 10.0%
!!! TATATTGAATTAGTATTTTT+TGG + chr6_4:78137307-78137326 Msa0997980:intron 10.0%
!!! ATTTTTTGGTTTTTTAAATT+TGG + chr6_4:78137321-78137340 Msa0997980:intron 10.0%
!!! ATATATTGAATTAGCTTTTT+GGG + chr6_4:78136644-78136663 Msa0997980:intron 15.0%
!!! ATATTTTAATAGTCAAAATG+GGG - chr6_4:78137290-78137309 None:intergenic 15.0%
!!! ATATATTGAATTAGCTTTTT+GGG + chr6_4:78136644-78136663 Msa0997980:intron 15.0%
!!! ATATTTTAATAGTCAAAATG+GGG - chr6_4:78137290-78137309 None:intergenic 15.0%
!! CAAAAAGCTAATTCAATATA+TGG - chr6_4:78136645-78136664 None:intergenic 20.0%
!!! CATATATTGAATTAGCTTTT+TGG + chr6_4:78136643-78136662 Msa0997980:intron 20.0%
!!! TATATTGAATTAGCTTTTTG+GGG + chr6_4:78136645-78136664 Msa0997980:intron 20.0%
!!! GTGAATTTTACAATATAACT+TGG + chr6_4:78136755-78136774 Msa0997980:intron 20.0%
!!! ATGTTTTAATAACCACATTT+CGG + chr6_4:78136789-78136808 Msa0997980:intron 20.0%
!! ATATATTAATATCCGAAATG+TGG - chr6_4:78136804-78136823 None:intergenic 20.0%
!!! ATATATTGAATTAGCCTTTT+TGG + chr6_4:78136818-78136837 Msa0997980:intron 20.0%
!! CAAAAAGCTAATTCAATATA+TGG - chr6_4:78136645-78136664 None:intergenic 20.0%
!!! CATATATTGAATTAGCTTTT+TGG + chr6_4:78136643-78136662 Msa0997980:intron 20.0%
!!! TATATTGAATTAGCTTTTTG+GGG + chr6_4:78136645-78136664 Msa0997980:intron 20.0%
!!! GTGAATTTTACAATATAACT+TGG + chr6_4:78136755-78136774 Msa0997980:intron 20.0%
!!! ATGTTTTAATAACCACATTT+CGG + chr6_4:78136789-78136808 Msa0997980:intron 20.0%
!! ATATATTAATATCCGAAATG+TGG - chr6_4:78136804-78136823 None:intergenic 20.0%
!!! ATATATTGAATTAGCCTTTT+TGG + chr6_4:78136818-78136837 Msa0997980:intron 20.0%
! CCAAATTATTCTTAGTGTTT+CGG + chr6_4:78136484-78136503 Msa0997980:intron 25.0%
! ATTACTTGAAAACCAAGTTA+TGG - chr6_4:78136574-78136593 None:intergenic 25.0%
!!! AGAGTTGAAAAGTACTAATT+TGG + chr6_4:78136720-78136739 Msa0997980:intron 25.0%
! AGGTTTACATCAAAAGAAAT+TGG + chr6_4:78136993-78137012 Msa0997980:intron 25.0%
!!! ATTTTGTTTTCATGTTGAAG+AGG + chr6_4:78137027-78137046 Msa0997980:intron 25.0%
!!! CAATTTTGAAAAACTCAGAA+AGG - chr6_4:78137153-78137172 None:intergenic 25.0%
!!! CTTTCTGAGTTTTTCAAAAT+TGG + chr6_4:78137151-78137170 Msa0997980:intron 25.0%
! ATCATACCAAATACCAAATT+AGG - chr6_4:78137216-78137235 None:intergenic 25.0%
! CCAAATTATTCTTAGTGTTT+CGG + chr6_4:78136484-78136503 Msa0997980:intron 25.0%
! ATTACTTGAAAACCAAGTTA+TGG - chr6_4:78136574-78136593 None:intergenic 25.0%
!!! AGAGTTGAAAAGTACTAATT+TGG + chr6_4:78136720-78136739 Msa0997980:intron 25.0%
! AGGTTTACATCAAAAGAAAT+TGG + chr6_4:78136993-78137012 Msa0997980:intron 25.0%
!!! ATTTTGTTTTCATGTTGAAG+AGG + chr6_4:78137027-78137046 Msa0997980:intron 25.0%
!!! CAATTTTGAAAAACTCAGAA+AGG - chr6_4:78137153-78137172 None:intergenic 25.0%
!!! CTTTCTGAGTTTTTCAAAAT+TGG + chr6_4:78137151-78137170 Msa0997980:intron 25.0%
! ATCATACCAAATACCAAATT+AGG - chr6_4:78137216-78137235 None:intergenic 25.0%
AATTGAAGGTGAAGATTTGA+AGG - chr6_4:78136323-78136342 None:intergenic 30.0%
TCAACAATCACTAGATGATT+TGG + chr6_4:78136435-78136454 Msa0997980:CDS 30.0%
CCGAAACACTAAGAATAATT+TGG - chr6_4:78136487-78136506 None:intergenic 30.0%
CAAGCATTATATCAAACACA+TGG - chr6_4:78136538-78136557 None:intergenic 30.0%
!!! TTTTTGGGGTTTTTCGAAAT+TGG + chr6_4:78136659-78136678 Msa0997980:intron 30.0%
! TGTGAAGTTTAGCTTAACAA+AGG + chr6_4:78136857-78136876 Msa0997980:intron 30.0%
CGGAAACATTATAACAAATC+AGG - chr6_4:78137053-78137072 None:intergenic 30.0%
!! AAATTTGACTAGTCTGAATG+AGG - chr6_4:78137120-78137139 None:intergenic 30.0%
TTCATGTTAAAGAGTTGAAG+AGG + chr6_4:78137371-78137390 Msa0997980:intron 30.0%
ATTTGATGAGGGATATTCTA+GGG + chr6_4:78137497-78137516 Msa0997980:CDS 30.0%
AATTGAAGGTGAAGATTTGA+AGG - chr6_4:78136323-78136342 None:intergenic 30.0%
TCAACAATCACTAGATGATT+TGG + chr6_4:78136435-78136454 Msa0997980:CDS 30.0%
CCGAAACACTAAGAATAATT+TGG - chr6_4:78136487-78136506 None:intergenic 30.0%
CAAGCATTATATCAAACACA+TGG - chr6_4:78136538-78136557 None:intergenic 30.0%
!!! TTTTTGGGGTTTTTCGAAAT+TGG + chr6_4:78136659-78136678 Msa0997980:intron 30.0%
! TGTGAAGTTTAGCTTAACAA+AGG + chr6_4:78136857-78136876 Msa0997980:intron 30.0%
CGGAAACATTATAACAAATC+AGG - chr6_4:78137053-78137072 None:intergenic 30.0%
!! AAATTTGACTAGTCTGAATG+AGG - chr6_4:78137120-78137139 None:intergenic 30.0%
TTCATGTTAAAGAGTTGAAG+AGG + chr6_4:78137371-78137390 Msa0997980:intron 30.0%
ATTTGATGAGGGATATTCTA+GGG + chr6_4:78137497-78137516 Msa0997980:CDS 30.0%
TTGTAGAGAGAGAGAATTGA+AGG - chr6_4:78136337-78136356 None:intergenic 35.0%
TCATTAGCATGTGGAATAGT+AGG - chr6_4:78136400-78136419 None:intergenic 35.0%
AGATTCTTCTCATTAGCATG+TGG - chr6_4:78136409-78136428 None:intergenic 35.0%
TTGGAAGACATAAGCAATGA+AGG + chr6_4:78136454-78136473 Msa0997980:CDS 35.0%
GCATTATATCAAACACATGG+AGG - chr6_4:78136535-78136554 None:intergenic 35.0%
GTGAACTTTCAACCATAACT+TGG + chr6_4:78136559-78136578 Msa0997980:intron 35.0%
! GAGCTTTAACAATGCTACAT+TGG - chr6_4:78136896-78136915 None:intergenic 35.0%
GTAGCATTGTTAAAGCTCTT+AGG + chr6_4:78136898-78136917 Msa0997980:intron 35.0%
! GTAGAGTTTTCCGTCTATTT+AGG + chr6_4:78136920-78136939 Msa0997980:intron 35.0%
ATGCTGTGTTGTGAAATTCA+CGG - chr6_4:78137073-78137092 None:intergenic 35.0%
TTATTGTGTTCGTGTTGAAG+AGG + chr6_4:78137190-78137209 Msa0997980:intron 35.0%
AAGAGGCCTAATTTGGTATT+TGG + chr6_4:78137207-78137226 Msa0997980:intron 35.0%
!! AGTATTGCAGAGGTATTTGA+AGG + chr6_4:78137450-78137469 Msa0997980:CDS 35.0%
!! GTATTGCAGAGGTATTTGAA+GGG + chr6_4:78137451-78137470 Msa0997980:CDS 35.0%
!! TATTGCAGAGGTATTTGAAG+GGG + chr6_4:78137452-78137471 Msa0997980:CDS 35.0%
AAATCCTGATCAGCATCTAT+TGG - chr6_4:78137481-78137500 None:intergenic 35.0%
GATTTGATGAGGGATATTCT+AGG + chr6_4:78137496-78137515 Msa0997980:CDS 35.0%
GAGTTTGATTCTGATTCAGA+GGG + chr6_4:78137598-78137617 Msa0997980:CDS 35.0%
CGTGATGTTAAAGCAAAAAG+CGG + chr6_4:78137661-78137680 Msa0997980:CDS 35.0%
GTGATGTTAAAGCAAAAAGC+GGG + chr6_4:78137662-78137681 Msa0997980:CDS 35.0%
TGATGTTAAAGCAAAAAGCG+GGG + chr6_4:78137663-78137682 Msa0997980:CDS 35.0%
TTGTAGAGAGAGAGAATTGA+AGG - chr6_4:78136337-78136356 None:intergenic 35.0%
TCATTAGCATGTGGAATAGT+AGG - chr6_4:78136400-78136419 None:intergenic 35.0%
AGATTCTTCTCATTAGCATG+TGG - chr6_4:78136409-78136428 None:intergenic 35.0%
TTGGAAGACATAAGCAATGA+AGG + chr6_4:78136454-78136473 Msa0997980:CDS 35.0%
GCATTATATCAAACACATGG+AGG - chr6_4:78136535-78136554 None:intergenic 35.0%
GTGAACTTTCAACCATAACT+TGG + chr6_4:78136559-78136578 Msa0997980:intron 35.0%
! GAGCTTTAACAATGCTACAT+TGG - chr6_4:78136896-78136915 None:intergenic 35.0%
GTAGCATTGTTAAAGCTCTT+AGG + chr6_4:78136898-78136917 Msa0997980:intron 35.0%
! GTAGAGTTTTCCGTCTATTT+AGG + chr6_4:78136920-78136939 Msa0997980:intron 35.0%
ATGCTGTGTTGTGAAATTCA+CGG - chr6_4:78137073-78137092 None:intergenic 35.0%
TTATTGTGTTCGTGTTGAAG+AGG + chr6_4:78137190-78137209 Msa0997980:intron 35.0%
AAGAGGCCTAATTTGGTATT+TGG + chr6_4:78137207-78137226 Msa0997980:intron 35.0%
!! AGTATTGCAGAGGTATTTGA+AGG + chr6_4:78137450-78137469 Msa0997980:CDS 35.0%
!! GTATTGCAGAGGTATTTGAA+GGG + chr6_4:78137451-78137470 Msa0997980:CDS 35.0%
!! TATTGCAGAGGTATTTGAAG+GGG + chr6_4:78137452-78137471 Msa0997980:CDS 35.0%
AAATCCTGATCAGCATCTAT+TGG - chr6_4:78137481-78137500 None:intergenic 35.0%
GATTTGATGAGGGATATTCT+AGG + chr6_4:78137496-78137515 Msa0997980:CDS 35.0%
GAGTTTGATTCTGATTCAGA+GGG + chr6_4:78137598-78137617 Msa0997980:CDS 35.0%
CGTGATGTTAAAGCAAAAAG+CGG + chr6_4:78137661-78137680 Msa0997980:CDS 35.0%
GTGATGTTAAAGCAAAAAGC+GGG + chr6_4:78137662-78137681 Msa0997980:CDS 35.0%
TGATGTTAAAGCAAAAAGCG+GGG + chr6_4:78137663-78137682 Msa0997980:CDS 35.0%
CTAGAAGAGAAGAACGAAGT+GGG - chr6_4:78136361-78136380 None:intergenic 40.0%
ACTAGAAGAGAAGAACGAAG+TGG - chr6_4:78136362-78136381 None:intergenic 40.0%
TTAGCATGTGGAATAGTAGG+AGG - chr6_4:78136397-78136416 None:intergenic 40.0%
CGAGTAGCGCAAATTCAAAA+TGG - chr6_4:78136609-78136628 None:intergenic 40.0%
!! TTGGGGTTTTTCGAAATTGG+TGG + chr6_4:78136662-78136681 Msa0997980:intron 40.0%
! GTTTAGCTTAACAAAGGTCC+CGG + chr6_4:78136863-78136882 Msa0997980:intron 40.0%
! TTTAGCTTAACAAAGGTCCC+GGG + chr6_4:78136864-78136883 Msa0997980:intron 40.0%
TGCAATTCCAGAAGTCTTTG+AGG + chr6_4:78137426-78137445 Msa0997980:CDS 40.0%
AATACTGCCTCAAAGACTTC+TGG - chr6_4:78137436-78137455 None:intergenic 40.0%
ATGCTGATCAGGATTTGATG+AGG + chr6_4:78137485-78137504 Msa0997980:CDS 40.0%
TGCTGATCAGGATTTGATGA+GGG + chr6_4:78137486-78137505 Msa0997980:CDS 40.0%
! ATGAGGGATATTCTAGGGAA+GGG + chr6_4:78137502-78137521 Msa0997980:CDS 40.0%
CGAGTTTGATTCTGATTCAG+AGG + chr6_4:78137597-78137616 Msa0997980:CDS 40.0%
!! CAGTGACTCTGATTTTGAAG+AGG + chr6_4:78137624-78137643 Msa0997980:CDS 40.0%
CTAGAAGAGAAGAACGAAGT+GGG - chr6_4:78136361-78136380 None:intergenic 40.0%
ACTAGAAGAGAAGAACGAAG+TGG - chr6_4:78136362-78136381 None:intergenic 40.0%
TTAGCATGTGGAATAGTAGG+AGG - chr6_4:78136397-78136416 None:intergenic 40.0%
CGAGTAGCGCAAATTCAAAA+TGG - chr6_4:78136609-78136628 None:intergenic 40.0%
!! TTGGGGTTTTTCGAAATTGG+TGG + chr6_4:78136662-78136681 Msa0997980:intron 40.0%
! GTTTAGCTTAACAAAGGTCC+CGG + chr6_4:78136863-78136882 Msa0997980:intron 40.0%
! TTTAGCTTAACAAAGGTCCC+GGG + chr6_4:78136864-78136883 Msa0997980:intron 40.0%
TGCAATTCCAGAAGTCTTTG+AGG + chr6_4:78137426-78137445 Msa0997980:CDS 40.0%
AATACTGCCTCAAAGACTTC+TGG - chr6_4:78137436-78137455 None:intergenic 40.0%
ATGCTGATCAGGATTTGATG+AGG + chr6_4:78137485-78137504 Msa0997980:CDS 40.0%
TGCTGATCAGGATTTGATGA+GGG + chr6_4:78137486-78137505 Msa0997980:CDS 40.0%
! ATGAGGGATATTCTAGGGAA+GGG + chr6_4:78137502-78137521 Msa0997980:CDS 40.0%
CGAGTTTGATTCTGATTCAG+AGG + chr6_4:78137597-78137616 Msa0997980:CDS 40.0%
!! CAGTGACTCTGATTTTGAAG+AGG + chr6_4:78137624-78137643 Msa0997980:CDS 40.0%
AGGTGTGAGAGAGACGAATA+CGG - chr6_4:78136303-78136322 None:intergenic 45.0%
!! ATGCTACATTGGTTCGAACC+CGG - chr6_4:78136885-78136904 None:intergenic 45.0%
ACCAATTACTGTAGCCCTGT+GGG - chr6_4:78136947-78136966 None:intergenic 45.0%
! AGTAATTGGTCTCCGTGGTT+GGG + chr6_4:78136957-78136976 Msa0997980:intron 45.0%
CGTGTTGAAGAGGCCTAATT+TGG + chr6_4:78137200-78137219 Msa0997980:intron 45.0%
!! TCTTTGAGGCAGTATTGCAG+AGG + chr6_4:78137440-78137459 Msa0997980:CDS 45.0%
GAAGCCAATAGATGCTGATC+AGG + chr6_4:78137474-78137493 Msa0997980:CDS 45.0%
! GATGAGGGATATTCTAGGGA+AGG + chr6_4:78137501-78137520 Msa0997980:CDS 45.0%
! TGAGGGATATTCTAGGGAAG+GGG + chr6_4:78137503-78137522 Msa0997980:CDS 45.0%
AGAGTCGAATGACGATGATG+AGG + chr6_4:78137528-78137547 Msa0997980:CDS 45.0%
TCGAATGACGATGATGAGGT+AGG + chr6_4:78137532-78137551 Msa0997980:CDS 45.0%
CGAATGACGATGATGAGGTA+GGG + chr6_4:78137533-78137552 Msa0997980:CDS 45.0%
AGATTCGGAAGACGATGATG+AGG + chr6_4:78137564-78137583 Msa0997980:CDS 45.0%
AGGTGTGAGAGAGACGAATA+CGG - chr6_4:78136303-78136322 None:intergenic 45.0%
!! ATGCTACATTGGTTCGAACC+CGG - chr6_4:78136885-78136904 None:intergenic 45.0%
ACCAATTACTGTAGCCCTGT+GGG - chr6_4:78136947-78136966 None:intergenic 45.0%
! AGTAATTGGTCTCCGTGGTT+GGG + chr6_4:78136957-78136976 Msa0997980:intron 45.0%
CGTGTTGAAGAGGCCTAATT+TGG + chr6_4:78137200-78137219 Msa0997980:intron 45.0%
!! TCTTTGAGGCAGTATTGCAG+AGG + chr6_4:78137440-78137459 Msa0997980:CDS 45.0%
GAAGCCAATAGATGCTGATC+AGG + chr6_4:78137474-78137493 Msa0997980:CDS 45.0%
! GATGAGGGATATTCTAGGGA+AGG + chr6_4:78137501-78137520 Msa0997980:CDS 45.0%
! TGAGGGATATTCTAGGGAAG+GGG + chr6_4:78137503-78137522 Msa0997980:CDS 45.0%
AGAGTCGAATGACGATGATG+AGG + chr6_4:78137528-78137547 Msa0997980:CDS 45.0%
TCGAATGACGATGATGAGGT+AGG + chr6_4:78137532-78137551 Msa0997980:CDS 45.0%
CGAATGACGATGATGAGGTA+GGG + chr6_4:78137533-78137552 Msa0997980:CDS 45.0%
AGATTCGGAAGACGATGATG+AGG + chr6_4:78137564-78137583 Msa0997980:CDS 45.0%
GTGGAATAGTAGGAGGTGGA+GGG - chr6_4:78136390-78136409 None:intergenic 50.0%
TGTGGAATAGTAGGAGGTGG+AGG - chr6_4:78136391-78136410 None:intergenic 50.0%
GCATGTGGAATAGTAGGAGG+TGG - chr6_4:78136394-78136413 None:intergenic 50.0%
!! TGCTACATTGGTTCGAACCC+GGG - chr6_4:78136884-78136903 None:intergenic 50.0%
TCCGTCTATTTAGGTCCCAC+AGG + chr6_4:78136929-78136948 Msa0997980:intron 50.0%
CCCTGTGGGACCTAAATAGA+CGG - chr6_4:78136933-78136952 None:intergenic 50.0%
CCGTCTATTTAGGTCCCACA+GGG + chr6_4:78136930-78136949 Msa0997980:intron 50.0%
TCCCACAGGGCTACAGTAAT+TGG + chr6_4:78136943-78136962 Msa0997980:intron 50.0%
GACCAATTACTGTAGCCCTG+TGG - chr6_4:78136948-78136967 None:intergenic 50.0%
! GCTACAGTAATTGGTCTCCG+TGG + chr6_4:78136952-78136971 Msa0997980:intron 50.0%
! CAGTAATTGGTCTCCGTGGT+TGG + chr6_4:78136956-78136975 Msa0997980:intron 50.0%
! AGTTGAAGAGGCGTGTTGCA+AGG + chr6_4:78137383-78137402 Msa0997980:CDS 50.0%
TGACGATGATGAGGTAGGGA+AGG + chr6_4:78137537-78137556 Msa0997980:CDS 50.0%
GACGATGATGAGGTAGGGAA+GGG + chr6_4:78137538-78137557 Msa0997980:CDS 50.0%
GGTAGGGAAGGGAACAGATT+CGG + chr6_4:78137549-78137568 Msa0997980:CDS 50.0%
GTGGAATAGTAGGAGGTGGA+GGG - chr6_4:78136390-78136409 None:intergenic 50.0%
TGTGGAATAGTAGGAGGTGG+AGG - chr6_4:78136391-78136410 None:intergenic 50.0%
GCATGTGGAATAGTAGGAGG+TGG - chr6_4:78136394-78136413 None:intergenic 50.0%
!! TGCTACATTGGTTCGAACCC+GGG - chr6_4:78136884-78136903 None:intergenic 50.0%
TCCGTCTATTTAGGTCCCAC+AGG + chr6_4:78136929-78136948 Msa0997980:intron 50.0%
CCCTGTGGGACCTAAATAGA+CGG - chr6_4:78136933-78136952 None:intergenic 50.0%
CCGTCTATTTAGGTCCCACA+GGG + chr6_4:78136930-78136949 Msa0997980:intron 50.0%
TCCCACAGGGCTACAGTAAT+TGG + chr6_4:78136943-78136962 Msa0997980:intron 50.0%
GACCAATTACTGTAGCCCTG+TGG - chr6_4:78136948-78136967 None:intergenic 50.0%
! GCTACAGTAATTGGTCTCCG+TGG + chr6_4:78136952-78136971 Msa0997980:intron 50.0%
! CAGTAATTGGTCTCCGTGGT+TGG + chr6_4:78136956-78136975 Msa0997980:intron 50.0%
! AGTTGAAGAGGCGTGTTGCA+AGG + chr6_4:78137383-78137402 Msa0997980:CDS 50.0%
TGACGATGATGAGGTAGGGA+AGG + chr6_4:78137537-78137556 Msa0997980:CDS 50.0%
GACGATGATGAGGTAGGGAA+GGG + chr6_4:78137538-78137557 Msa0997980:CDS 50.0%
GGTAGGGAAGGGAACAGATT+CGG + chr6_4:78137549-78137568 Msa0997980:CDS 50.0%
GAGACGAATACGGCGTGCTT+GGG - chr6_4:78136293-78136312 None:intergenic 55.0%
AGAGACGAATACGGCGTGCT+TGG - chr6_4:78136294-78136313 None:intergenic 55.0%
CGTGTTGCAAGGCTTCGAGA+AGG + chr6_4:78137394-78137413 Msa0997980:CDS 55.0%
GAGACGAATACGGCGTGCTT+GGG - chr6_4:78136293-78136312 None:intergenic 55.0%
AGAGACGAATACGGCGTGCT+TGG - chr6_4:78136294-78136313 None:intergenic 55.0%
CGTGTTGCAAGGCTTCGAGA+AGG + chr6_4:78137394-78137413 Msa0997980:CDS 55.0%
TTGGTCTCCGTGGTTGGGCG+CGG + chr6_4:78136962-78136981 Msa0997980:intron 65.0%
GTATCCTCCGCGCCCAACCA+CGG - chr6_4:78136972-78136991 None:intergenic 65.0%
TTGGTCTCCGTGGTTGGGCG+CGG + chr6_4:78136962-78136981 Msa0997980:intron 65.0%
GTATCCTCCGCGCCCAACCA+CGG - chr6_4:78136972-78136991 None:intergenic 65.0%
GGTTGGGCGCGGAGGATACG+AGG + chr6_4:78136973-78136992 Msa0997980:intron 70.0%
GGTTGGGCGCGGAGGATACG+AGG + chr6_4:78136973-78136992 Msa0997980:intron 70.0%
GTCTCCGTGGTTGGGCGCGG+AGG + chr6_4:78136965-78136984 Msa0997980:intron 75.0%
GTCTCCGTGGTTGGGCGCGG+AGG + chr6_4:78136965-78136984 Msa0997980:intron 75.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 78136220 78137702 78136220 ID=Msa0997980;Name=Msa0997980
chr6_4 mRNA 78136220 78137702 78136220 ID=Msa0997980-mRNA-1;Parent=Msa0997980;Name=Msa0997980-mRNA-1;_AED=0.00;_eAED=0.00;_QI=39|1|0.5|1|1|1|2|0|178
chr6_4 exon 78136220 78136475 78136220 ID=Msa0997980-mRNA-1:exon:14779;Parent=Msa0997980-mRNA-1
chr6_4 exon 78137383 78137702 78137383 ID=Msa0997980-mRNA-1:exon:14780;Parent=Msa0997980-mRNA-1
chr6_4 five_prime_UTR 78136220 78136258 78136220 ID=Msa0997980-mRNA-1:five_prime_utr;Parent=Msa0997980-mRNA-1
chr6_4 CDS 78136259 78136475 78136259 ID=Msa0997980-mRNA-1:cds;Parent=Msa0997980-mRNA-1
chr6_4 CDS 78137383 78137702 78137383 ID=Msa0997980-mRNA-1:cds;Parent=Msa0997980-mRNA-1
Gene Sequence

>Msa0997980

ATGACTTCTATTCTTCTAAGAAACATCTCATCCCAAGCACGCCGTATTCGTCTCTCTCACACCTTCAAATCTTCACCTTCAATTCTCTCTCTCTACAAACCCACTTCGTTCTTCTCTTCTAGTAGTGACCCTCCACCTCCTACTATTCCACATGCTAATGAGAAGAATCTACAAAATCAACAATCACTAGATGATTTGGAAGACATAAGCAATGAAGAGTTGAAGAGGCGTGTTGCAAGGCTTCGAGAAGGTGATGATGATGCAATTCCAGAAGTCTTTGAGGCAGTATTGCAGAGGTATTTGAAGGGGAAGCCAATAGATGCTGATCAGGATTTGATGAGGGATATTCTAGGGAAGGGGACAGAGTCGAATGACGATGATGAGGTAGGGAAGGGAACAGATTCGGAAGACGATGATGAGGAAAATGAAGACGAGTTTGATTCTGATTCAGAGGGAATCAGTGACTCTGATTTTGAAGAGGAAGAAGCTTTTAATCGTGATGTTAAAGCAAAAAGCGGGGTCAATTTAATGAAGTGA

Protein sequence

>Msa0997980

MTSILLRNISSQARRIRLSHTFKSSPSILSLYKPTSFFSSSSDPPPPTIPHANEKNLQNQQSLDDLEDISNEELKRRVARLREGDDDAIPEVFEAVLQRYLKGKPIDADQDLMRDILGKGTESNDDDEVGKGTDSEDDDEENEDEFDSDSEGISDSDFEEEEAFNRDVKAKSGVNLMK*