Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0997980 | XP_003620416.1 | 89.944 | 179 | 17 | 1 | 1 | 178 | 1 | 179 | 1.99e-82 | 251 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0997980 | G7KMM1 | 89.944 | 179 | 17 | 1 | 1 | 178 | 1 | 179 | 9.49e-83 | 251 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0003890 | Msa0997980 | 0.837201 | 5.978512e-57 | -8.615850e-47 |
Msa0006070 | Msa0997980 | 0.805657 | 1.201111e-49 | -8.615850e-47 |
Msa0011960 | Msa0997980 | 0.806886 | 6.616327e-50 | -8.615850e-47 |
Msa0032580 | Msa0997980 | 0.804485 | 2.111738e-49 | -8.615850e-47 |
Msa0033110 | Msa0997980 | 0.817968 | 2.503479e-52 | -8.615850e-47 |
Msa0033260 | Msa0997980 | 0.812396 | 4.329327e-51 | -8.615850e-47 |
Msa0037570 | Msa0997980 | -0.804085 | 2.558693e-49 | -8.615850e-47 |
Msa0054480 | Msa0997980 | 0.818263 | 2.147384e-52 | -8.615850e-47 |
Msa0063530 | Msa0997980 | 0.814012 | 1.913521e-51 | -8.615850e-47 |
Msa0076320 | Msa0997980 | 0.807645 | 4.569037e-50 | -8.615850e-47 |
Msa0078900 | Msa0997980 | 0.819733 | 9.944288e-53 | -8.615850e-47 |
Msa0084380 | Msa0997980 | 0.830184 | 3.388651e-55 | -8.615850e-47 |
Msa0091410 | Msa0997980 | 0.810896 | 9.174463e-51 | -8.615850e-47 |
Msa0115270 | Msa0997980 | 0.819607 | 1.062762e-52 | -8.615850e-47 |
Msa0610430 | Msa0997980 | 0.801863 | 7.366452e-49 | -8.615850e-47 |
Msa0610840 | Msa0997980 | -0.814780 | 1.294094e-51 | -8.615850e-47 |
Msa0613440 | Msa0997980 | 0.801610 | 8.301608e-49 | -8.615850e-47 |
Msa0617640 | Msa0997980 | 0.829584 | 4.744818e-55 | -8.615850e-47 |
Msa0625720 | Msa0997980 | 0.811807 | 5.819870e-51 | -8.615850e-47 |
Msa0641670 | Msa0997980 | 0.833735 | 4.496045e-56 | -8.615850e-47 |
Msa0643350 | Msa0997980 | 0.815109 | 1.094143e-51 | -8.615850e-47 |
Msa0661650 | Msa0997980 | 0.812629 | 3.851383e-51 | -8.615850e-47 |
Msa0663390 | Msa0997980 | 0.807532 | 4.828619e-50 | -8.615850e-47 |
Msa0698920 | Msa0997980 | 0.802121 | 6.519209e-49 | -8.615850e-47 |
Msa0707250 | Msa0997980 | 0.806680 | 7.313166e-50 | -8.615850e-47 |
Msa0715700 | Msa0997980 | 0.835054 | 2.098011e-56 | -8.615850e-47 |
Msa0716840 | Msa0997980 | 0.808834 | 2.548906e-50 | -8.615850e-47 |
Msa0731940 | Msa0997980 | 0.800678 | 1.287935e-48 | -8.615850e-47 |
Msa0794670 | Msa0997980 | 0.800116 | 1.675641e-48 | -8.615850e-47 |
Msa0802830 | Msa0997980 | 0.807945 | 3.944956e-50 | -8.615850e-47 |
Msa0808270 | Msa0997980 | 0.802975 | 4.346555e-49 | -8.615850e-47 |
Msa0820850 | Msa0997980 | 0.808761 | 2.641958e-50 | -8.615850e-47 |
Msa0126610 | Msa0997980 | 0.814623 | 1.402077e-51 | -8.615850e-47 |
Msa0150820 | Msa0997980 | 0.813925 | 1.999660e-51 | -8.615850e-47 |
Msa0159340 | Msa0997980 | 0.806066 | 9.852110e-50 | -8.615850e-47 |
Msa0160550 | Msa0997980 | 0.840200 | 1.003304e-57 | -8.615850e-47 |
Msa0168230 | Msa0997980 | 0.809527 | 1.810748e-50 | -8.615850e-47 |
Msa0171540 | Msa0997980 | 0.831146 | 1.969062e-55 | -8.615850e-47 |
Msa0172970 | Msa0997980 | 0.800050 | 1.728764e-48 | -8.615850e-47 |
Msa0222890 | Msa0997980 | 0.809786 | 1.592556e-50 | -8.615850e-47 |
Msa0383800 | Msa0997980 | 0.814345 | 1.615706e-51 | -8.615850e-47 |
Msa0385580 | Msa0997980 | 0.811917 | 5.507074e-51 | -8.615850e-47 |
Msa0402790 | Msa0997980 | 0.819550 | 1.094945e-52 | -8.615850e-47 |
Msa0434180 | Msa0997980 | 0.821005 | 5.082087e-53 | -8.615850e-47 |
Msa0467380 | Msa0997980 | 0.801238 | 9.892290e-49 | -8.615850e-47 |
Msa0997980 | Msa0998690 | 0.806319 | 8.716653e-50 | -8.615850e-47 |
Msa0997980 | Msa0999970 | 0.807683 | 4.483275e-50 | -8.615850e-47 |
Msa0997980 | Msa1000890 | 0.801939 | 7.106677e-49 | -8.615850e-47 |
Msa0997980 | Msa1000900 | 0.803098 | 4.099095e-49 | -8.615850e-47 |
Msa0997980 | Msa1003620 | 0.814159 | 1.775718e-51 | -8.615850e-47 |
Msa0997980 | Msa1014540 | 0.816439 | 5.526212e-52 | -8.615850e-47 |
Msa0997980 | Msa1046460 | 0.810631 | 1.047219e-50 | -8.615850e-47 |
Msa0997980 | Msa1058710 | 0.835148 | 1.986047e-56 | -8.615850e-47 |
Msa0997980 | Msa1075650 | 0.825423 | 4.726933e-54 | -8.615850e-47 |
Msa0997980 | Msa1087710 | 0.810659 | 1.032820e-50 | -8.615850e-47 |
Msa0997980 | Msa1088640 | 0.801007 | 1.103086e-48 | -8.615850e-47 |
Msa0997980 | Msa1109680 | 0.809858 | 1.537190e-50 | -8.615850e-47 |
Msa0997980 | Msa1111870 | 0.802991 | 4.313323e-49 | -8.615850e-47 |
Msa0997980 | Msa1121490 | 0.818118 | 2.315967e-52 | -8.615850e-47 |
Msa0997980 | Msa1162270 | 0.807255 | 5.525573e-50 | -8.615850e-47 |
Msa0997980 | Msa1162780 | 0.802212 | 6.243859e-49 | -8.615850e-47 |
Msa0997980 | Msa1181250 | 0.840928 | 6.469083e-58 | -8.615850e-47 |
Msa0997980 | Msa1181330 | 0.840733 | 7.277683e-58 | -8.615850e-47 |
Msa0997980 | Msa1181910 | 0.809004 | 2.343952e-50 | -8.615850e-47 |
Msa0997980 | Msa1186950 | -0.804771 | 1.840548e-49 | -8.615850e-47 |
Msa0997980 | Msa1210020 | 0.801187 | 1.013638e-48 | -8.615850e-47 |
Msa0997980 | Msa1210110 | 0.805587 | 1.242443e-49 | -8.615850e-47 |
Msa0997980 | Msa1246510 | 0.820592 | 6.322437e-53 | -8.615850e-47 |
Msa0997980 | Msa1253020 | 0.802481 | 5.497608e-49 | -8.615850e-47 |
Msa0997980 | Msa1280320 | 0.816322 | 5.871705e-52 | -8.615850e-47 |
Msa0997980 | Msa1282580 | -0.805487 | 1.303710e-49 | -8.615850e-47 |
Msa0997980 | Msa1287460 | 0.820748 | 5.822819e-53 | -8.615850e-47 |
Msa0997980 | Msa1298510 | 0.802305 | 5.974318e-49 | -8.615850e-47 |
Msa0997980 | Msa1302640 | 0.810034 | 1.408686e-50 | -8.615850e-47 |
Msa0997980 | Msa1302850 | 0.812687 | 3.739818e-51 | -8.615850e-47 |
Msa0997980 | Msa1306920 | 0.829083 | 6.277870e-55 | -8.615850e-47 |
Msa0997980 | Msa1392780 | 0.817903 | 2.589545e-52 | -8.615850e-47 |
Msa0997980 | Msa1419960 | 0.816426 | 5.563946e-52 | -8.615850e-47 |
Msa0997980 | Msa1427230 | 0.811689 | 6.175618e-51 | -8.615850e-47 |
Msa0997980 | Msa1442210 | 0.814720 | 1.334702e-51 | -8.615850e-47 |
Msa0997980 | Msa1454620 | 0.801609 | 8.305740e-49 | -8.615850e-47 |
Msa0997980 | Msa1458750 | 0.824216 | 9.101993e-54 | -8.615850e-47 |
Msa0997980 | Msa1466540 | 0.811827 | 5.762361e-51 | -8.615850e-47 |
Msa0275000 | Msa0997980 | 0.803336 | 3.660502e-49 | -8.615850e-47 |
Msa0279220 | Msa0997980 | 0.810815 | 9.556620e-51 | -8.615850e-47 |
Msa0279240 | Msa0997980 | 0.815231 | 1.028033e-51 | -8.615850e-47 |
Msa0280090 | Msa0997980 | 0.806698 | 7.251230e-50 | -8.615850e-47 |
Msa0296480 | Msa0997980 | 0.805185 | 1.507923e-49 | -8.615850e-47 |
Msa0299870 | Msa0997980 | 0.811336 | 7.367507e-51 | -8.615850e-47 |
Msa0309750 | Msa0997980 | 0.813136 | 2.981481e-51 | -8.615850e-47 |
Msa0318980 | Msa0997980 | 0.823569 | 1.290518e-53 | -8.615850e-47 |
Msa0337620 | Msa0997980 | 0.810163 | 1.321334e-50 | -8.615850e-47 |
Msa0512750 | Msa0997980 | 0.801764 | 7.718676e-49 | -8.615850e-47 |
Msa0529040 | Msa0997980 | 0.809030 | 2.314647e-50 | -8.615850e-47 |
Msa0529890 | Msa0997980 | 0.812417 | 4.285303e-51 | -8.615850e-47 |
Msa0545700 | Msa0997980 | 0.804620 | 1.979090e-49 | -8.615850e-47 |
Msa0555450 | Msa0997980 | 0.814745 | 1.317786e-51 | -8.615850e-47 |
Msa0585560 | Msa0997980 | 0.808002 | 3.836717e-50 | -8.615850e-47 |
Msa0592440 | Msa0997980 | 0.801047 | 1.082344e-48 | -8.615850e-47 |
Msa0598780 | Msa0997980 | 0.804831 | 1.788486e-49 | -8.615850e-47 |
Msa0849030 | Msa0997980 | 0.812031 | 5.201384e-51 | -8.615850e-47 |
Msa0858130 | Msa0997980 | 0.814169 | 1.766370e-51 | -8.615850e-47 |
Msa0861130 | Msa0997980 | 0.807011 | 6.225766e-50 | -8.615850e-47 |
Msa0927380 | Msa0997980 | 0.805650 | 1.205060e-49 | -8.615850e-47 |
Msa0947660 | Msa0997980 | 0.800102 | 1.687074e-48 | -8.615850e-47 |
Msa0965490 | Msa0997980 | 0.813208 | 2.874718e-51 | -8.615850e-47 |
Msa0969810 | Msa0997980 | 0.815667 | 8.221366e-52 | -8.615850e-47 |
Msa0974070 | Msa0997980 | 0.805577 | 1.248460e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0997980 | MtrunA17_Chr6g0483651 | 89.944 | 179 | 17 | 1 | 1 | 178 | 1 | 179 | 1.83e-86 | 251 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0997980 | AT3G18240.2 | 35.625 | 160 | 90 | 5 | 1 | 148 | 1 | 159 | 3.82e-11 | 61.2 |
Msa0997980 | AT3G18240.1 | 35.625 | 160 | 90 | 5 | 1 | 148 | 1 | 159 | 3.82e-11 | 61.2 |
Find 41 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAACAATCACTAGATGATT+TGG | 0.308291 | 6_4:+78136435 | Msa0997980:CDS |
TCATTAGCATGTGGAATAGT+AGG | 0.396515 | 6_4:-78136397 | None:intergenic |
TTGTAGAGAGAGAGAATTGA+AGG | 0.399375 | 6_4:-78136334 | None:intergenic |
AGAGACGAATACGGCGTGCT+TGG | 0.419965 | 6_4:-78136291 | None:intergenic |
AATTGAAGGTGAAGATTTGA+AGG | 0.420520 | 6_4:-78136320 | None:intergenic |
AAATCCTGATCAGCATCTAT+TGG | 0.420664 | 6_4:-78137478 | None:intergenic |
GATTTGATGAGGGATATTCT+AGG | 0.428796 | 6_4:+78137496 | Msa0997980:CDS |
GAAGCCAATAGATGCTGATC+AGG | 0.453231 | 6_4:+78137474 | Msa0997980:CDS |
TGCAATTCCAGAAGTCTTTG+AGG | 0.475249 | 6_4:+78137426 | Msa0997980:CDS |
AATACTGCCTCAAAGACTTC+TGG | 0.481399 | 6_4:-78137433 | None:intergenic |
GGTAGGGAAGGGAACAGATT+CGG | 0.493759 | 6_4:+78137549 | Msa0997980:CDS |
CGAGTTTGATTCTGATTCAG+AGG | 0.495337 | 6_4:+78137597 | Msa0997980:CDS |
AGTATTGCAGAGGTATTTGA+AGG | 0.515107 | 6_4:+78137450 | Msa0997980:CDS |
AGGTGTGAGAGAGACGAATA+CGG | 0.519422 | 6_4:-78136300 | None:intergenic |
TTGGAAGACATAAGCAATGA+AGG | 0.528909 | 6_4:+78136454 | Msa0997980:CDS |
ATTTGATGAGGGATATTCTA+GGG | 0.530573 | 6_4:+78137497 | Msa0997980:CDS |
GCATGTGGAATAGTAGGAGG+TGG | 0.531182 | 6_4:-78136391 | None:intergenic |
GATGAGGGATATTCTAGGGA+AGG | 0.531728 | 6_4:+78137501 | Msa0997980:CDS |
TGACGATGATGAGGTAGGGA+AGG | 0.546633 | 6_4:+78137537 | Msa0997980:CDS |
TTCATGTTAAAGAGTTGAAG+AGG | 0.552220 | 6_4:+78137371 | Msa0997980:intron |
ATGAGGGATATTCTAGGGAA+GGG | 0.555830 | 6_4:+78137502 | Msa0997980:CDS |
TGTGGAATAGTAGGAGGTGG+AGG | 0.555918 | 6_4:-78136388 | None:intergenic |
TCGAATGACGATGATGAGGT+AGG | 0.558012 | 6_4:+78137532 | Msa0997980:CDS |
AGTTGAAGAGGCGTGTTGCA+AGG | 0.561310 | 6_4:+78137383 | Msa0997980:CDS |
CGAATGACGATGATGAGGTA+GGG | 0.565259 | 6_4:+78137533 | Msa0997980:CDS |
GAGTTTGATTCTGATTCAGA+GGG | 0.569881 | 6_4:+78137598 | Msa0997980:CDS |
TGCTGATCAGGATTTGATGA+GGG | 0.581135 | 6_4:+78137486 | Msa0997980:CDS |
ATGCTGATCAGGATTTGATG+AGG | 0.589069 | 6_4:+78137485 | Msa0997980:CDS |
GACGATGATGAGGTAGGGAA+GGG | 0.607551 | 6_4:+78137538 | Msa0997980:CDS |
AGATTCTTCTCATTAGCATG+TGG | 0.610398 | 6_4:-78136406 | None:intergenic |
AGATTCGGAAGACGATGATG+AGG | 0.621691 | 6_4:+78137564 | Msa0997980:CDS |
TATTGCAGAGGTATTTGAAG+GGG | 0.623018 | 6_4:+78137452 | Msa0997980:CDS |
TTAGCATGTGGAATAGTAGG+AGG | 0.639344 | 6_4:-78136394 | None:intergenic |
TGAGGGATATTCTAGGGAAG+GGG | 0.640498 | 6_4:+78137503 | Msa0997980:CDS |
GTATTGCAGAGGTATTTGAA+GGG | 0.641068 | 6_4:+78137451 | Msa0997980:CDS |
CTAGAAGAGAAGAACGAAGT+GGG | 0.641732 | 6_4:-78136358 | None:intergenic |
TCTTTGAGGCAGTATTGCAG+AGG | 0.647544 | 6_4:+78137440 | Msa0997980:CDS |
CGTGTTGCAAGGCTTCGAGA+AGG | 0.648821 | 6_4:+78137394 | Msa0997980:CDS |
AGAGTCGAATGACGATGATG+AGG | 0.661123 | 6_4:+78137528 | Msa0997980:CDS |
GTGGAATAGTAGGAGGTGGA+GGG | 0.661327 | 6_4:-78136387 | None:intergenic |
ACTAGAAGAGAAGAACGAAG+TGG | 0.662176 | 6_4:-78136359 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTTTAAAAAAATCCAAAA+AGG | - | chr6_4:78136835-78136854 | None:intergenic | 10.0% |
!!! | TTTTTGGATTTTTTTAAAAT+TGG | + | chr6_4:78136834-78136853 | Msa0997980:intron | 10.0% |
!!! | TATATTTTAATAGTCAAAAT+GGG | - | chr6_4:78137291-78137310 | None:intergenic | 10.0% |
!!! | ATATATTTTAATAGTCAAAA+TGG | - | chr6_4:78137292-78137311 | None:intergenic | 10.0% |
!!! | TATATTGAATTAGTATTTTT+TGG | + | chr6_4:78137307-78137326 | Msa0997980:intron | 10.0% |
!!! | ATTTTTTGGTTTTTTAAATT+TGG | + | chr6_4:78137321-78137340 | Msa0997980:intron | 10.0% |
!!! | AATTTTAAAAAAATCCAAAA+AGG | - | chr6_4:78136835-78136854 | None:intergenic | 10.0% |
!!! | TTTTTGGATTTTTTTAAAAT+TGG | + | chr6_4:78136834-78136853 | Msa0997980:intron | 10.0% |
!!! | TATATTTTAATAGTCAAAAT+GGG | - | chr6_4:78137291-78137310 | None:intergenic | 10.0% |
!!! | ATATATTTTAATAGTCAAAA+TGG | - | chr6_4:78137292-78137311 | None:intergenic | 10.0% |
!!! | TATATTGAATTAGTATTTTT+TGG | + | chr6_4:78137307-78137326 | Msa0997980:intron | 10.0% |
!!! | ATTTTTTGGTTTTTTAAATT+TGG | + | chr6_4:78137321-78137340 | Msa0997980:intron | 10.0% |
!!! | ATATATTGAATTAGCTTTTT+GGG | + | chr6_4:78136644-78136663 | Msa0997980:intron | 15.0% |
!!! | ATATTTTAATAGTCAAAATG+GGG | - | chr6_4:78137290-78137309 | None:intergenic | 15.0% |
!!! | ATATATTGAATTAGCTTTTT+GGG | + | chr6_4:78136644-78136663 | Msa0997980:intron | 15.0% |
!!! | ATATTTTAATAGTCAAAATG+GGG | - | chr6_4:78137290-78137309 | None:intergenic | 15.0% |
!! | CAAAAAGCTAATTCAATATA+TGG | - | chr6_4:78136645-78136664 | None:intergenic | 20.0% |
!!! | CATATATTGAATTAGCTTTT+TGG | + | chr6_4:78136643-78136662 | Msa0997980:intron | 20.0% |
!!! | TATATTGAATTAGCTTTTTG+GGG | + | chr6_4:78136645-78136664 | Msa0997980:intron | 20.0% |
!!! | GTGAATTTTACAATATAACT+TGG | + | chr6_4:78136755-78136774 | Msa0997980:intron | 20.0% |
!!! | ATGTTTTAATAACCACATTT+CGG | + | chr6_4:78136789-78136808 | Msa0997980:intron | 20.0% |
!! | ATATATTAATATCCGAAATG+TGG | - | chr6_4:78136804-78136823 | None:intergenic | 20.0% |
!!! | ATATATTGAATTAGCCTTTT+TGG | + | chr6_4:78136818-78136837 | Msa0997980:intron | 20.0% |
!! | CAAAAAGCTAATTCAATATA+TGG | - | chr6_4:78136645-78136664 | None:intergenic | 20.0% |
!!! | CATATATTGAATTAGCTTTT+TGG | + | chr6_4:78136643-78136662 | Msa0997980:intron | 20.0% |
!!! | TATATTGAATTAGCTTTTTG+GGG | + | chr6_4:78136645-78136664 | Msa0997980:intron | 20.0% |
!!! | GTGAATTTTACAATATAACT+TGG | + | chr6_4:78136755-78136774 | Msa0997980:intron | 20.0% |
!!! | ATGTTTTAATAACCACATTT+CGG | + | chr6_4:78136789-78136808 | Msa0997980:intron | 20.0% |
!! | ATATATTAATATCCGAAATG+TGG | - | chr6_4:78136804-78136823 | None:intergenic | 20.0% |
!!! | ATATATTGAATTAGCCTTTT+TGG | + | chr6_4:78136818-78136837 | Msa0997980:intron | 20.0% |
! | CCAAATTATTCTTAGTGTTT+CGG | + | chr6_4:78136484-78136503 | Msa0997980:intron | 25.0% |
! | ATTACTTGAAAACCAAGTTA+TGG | - | chr6_4:78136574-78136593 | None:intergenic | 25.0% |
!!! | AGAGTTGAAAAGTACTAATT+TGG | + | chr6_4:78136720-78136739 | Msa0997980:intron | 25.0% |
! | AGGTTTACATCAAAAGAAAT+TGG | + | chr6_4:78136993-78137012 | Msa0997980:intron | 25.0% |
!!! | ATTTTGTTTTCATGTTGAAG+AGG | + | chr6_4:78137027-78137046 | Msa0997980:intron | 25.0% |
!!! | CAATTTTGAAAAACTCAGAA+AGG | - | chr6_4:78137153-78137172 | None:intergenic | 25.0% |
!!! | CTTTCTGAGTTTTTCAAAAT+TGG | + | chr6_4:78137151-78137170 | Msa0997980:intron | 25.0% |
! | ATCATACCAAATACCAAATT+AGG | - | chr6_4:78137216-78137235 | None:intergenic | 25.0% |
! | CCAAATTATTCTTAGTGTTT+CGG | + | chr6_4:78136484-78136503 | Msa0997980:intron | 25.0% |
! | ATTACTTGAAAACCAAGTTA+TGG | - | chr6_4:78136574-78136593 | None:intergenic | 25.0% |
!!! | AGAGTTGAAAAGTACTAATT+TGG | + | chr6_4:78136720-78136739 | Msa0997980:intron | 25.0% |
! | AGGTTTACATCAAAAGAAAT+TGG | + | chr6_4:78136993-78137012 | Msa0997980:intron | 25.0% |
!!! | ATTTTGTTTTCATGTTGAAG+AGG | + | chr6_4:78137027-78137046 | Msa0997980:intron | 25.0% |
!!! | CAATTTTGAAAAACTCAGAA+AGG | - | chr6_4:78137153-78137172 | None:intergenic | 25.0% |
!!! | CTTTCTGAGTTTTTCAAAAT+TGG | + | chr6_4:78137151-78137170 | Msa0997980:intron | 25.0% |
! | ATCATACCAAATACCAAATT+AGG | - | chr6_4:78137216-78137235 | None:intergenic | 25.0% |
AATTGAAGGTGAAGATTTGA+AGG | - | chr6_4:78136323-78136342 | None:intergenic | 30.0% | |
TCAACAATCACTAGATGATT+TGG | + | chr6_4:78136435-78136454 | Msa0997980:CDS | 30.0% | |
CCGAAACACTAAGAATAATT+TGG | - | chr6_4:78136487-78136506 | None:intergenic | 30.0% | |
CAAGCATTATATCAAACACA+TGG | - | chr6_4:78136538-78136557 | None:intergenic | 30.0% | |
!!! | TTTTTGGGGTTTTTCGAAAT+TGG | + | chr6_4:78136659-78136678 | Msa0997980:intron | 30.0% |
! | TGTGAAGTTTAGCTTAACAA+AGG | + | chr6_4:78136857-78136876 | Msa0997980:intron | 30.0% |
CGGAAACATTATAACAAATC+AGG | - | chr6_4:78137053-78137072 | None:intergenic | 30.0% | |
!! | AAATTTGACTAGTCTGAATG+AGG | - | chr6_4:78137120-78137139 | None:intergenic | 30.0% |
TTCATGTTAAAGAGTTGAAG+AGG | + | chr6_4:78137371-78137390 | Msa0997980:intron | 30.0% | |
ATTTGATGAGGGATATTCTA+GGG | + | chr6_4:78137497-78137516 | Msa0997980:CDS | 30.0% | |
AATTGAAGGTGAAGATTTGA+AGG | - | chr6_4:78136323-78136342 | None:intergenic | 30.0% | |
TCAACAATCACTAGATGATT+TGG | + | chr6_4:78136435-78136454 | Msa0997980:CDS | 30.0% | |
CCGAAACACTAAGAATAATT+TGG | - | chr6_4:78136487-78136506 | None:intergenic | 30.0% | |
CAAGCATTATATCAAACACA+TGG | - | chr6_4:78136538-78136557 | None:intergenic | 30.0% | |
!!! | TTTTTGGGGTTTTTCGAAAT+TGG | + | chr6_4:78136659-78136678 | Msa0997980:intron | 30.0% |
! | TGTGAAGTTTAGCTTAACAA+AGG | + | chr6_4:78136857-78136876 | Msa0997980:intron | 30.0% |
CGGAAACATTATAACAAATC+AGG | - | chr6_4:78137053-78137072 | None:intergenic | 30.0% | |
!! | AAATTTGACTAGTCTGAATG+AGG | - | chr6_4:78137120-78137139 | None:intergenic | 30.0% |
TTCATGTTAAAGAGTTGAAG+AGG | + | chr6_4:78137371-78137390 | Msa0997980:intron | 30.0% | |
ATTTGATGAGGGATATTCTA+GGG | + | chr6_4:78137497-78137516 | Msa0997980:CDS | 30.0% | |
TTGTAGAGAGAGAGAATTGA+AGG | - | chr6_4:78136337-78136356 | None:intergenic | 35.0% | |
TCATTAGCATGTGGAATAGT+AGG | - | chr6_4:78136400-78136419 | None:intergenic | 35.0% | |
AGATTCTTCTCATTAGCATG+TGG | - | chr6_4:78136409-78136428 | None:intergenic | 35.0% | |
TTGGAAGACATAAGCAATGA+AGG | + | chr6_4:78136454-78136473 | Msa0997980:CDS | 35.0% | |
GCATTATATCAAACACATGG+AGG | - | chr6_4:78136535-78136554 | None:intergenic | 35.0% | |
GTGAACTTTCAACCATAACT+TGG | + | chr6_4:78136559-78136578 | Msa0997980:intron | 35.0% | |
! | GAGCTTTAACAATGCTACAT+TGG | - | chr6_4:78136896-78136915 | None:intergenic | 35.0% |
GTAGCATTGTTAAAGCTCTT+AGG | + | chr6_4:78136898-78136917 | Msa0997980:intron | 35.0% | |
! | GTAGAGTTTTCCGTCTATTT+AGG | + | chr6_4:78136920-78136939 | Msa0997980:intron | 35.0% |
ATGCTGTGTTGTGAAATTCA+CGG | - | chr6_4:78137073-78137092 | None:intergenic | 35.0% | |
TTATTGTGTTCGTGTTGAAG+AGG | + | chr6_4:78137190-78137209 | Msa0997980:intron | 35.0% | |
AAGAGGCCTAATTTGGTATT+TGG | + | chr6_4:78137207-78137226 | Msa0997980:intron | 35.0% | |
!! | AGTATTGCAGAGGTATTTGA+AGG | + | chr6_4:78137450-78137469 | Msa0997980:CDS | 35.0% |
!! | GTATTGCAGAGGTATTTGAA+GGG | + | chr6_4:78137451-78137470 | Msa0997980:CDS | 35.0% |
!! | TATTGCAGAGGTATTTGAAG+GGG | + | chr6_4:78137452-78137471 | Msa0997980:CDS | 35.0% |
AAATCCTGATCAGCATCTAT+TGG | - | chr6_4:78137481-78137500 | None:intergenic | 35.0% | |
GATTTGATGAGGGATATTCT+AGG | + | chr6_4:78137496-78137515 | Msa0997980:CDS | 35.0% | |
GAGTTTGATTCTGATTCAGA+GGG | + | chr6_4:78137598-78137617 | Msa0997980:CDS | 35.0% | |
CGTGATGTTAAAGCAAAAAG+CGG | + | chr6_4:78137661-78137680 | Msa0997980:CDS | 35.0% | |
GTGATGTTAAAGCAAAAAGC+GGG | + | chr6_4:78137662-78137681 | Msa0997980:CDS | 35.0% | |
TGATGTTAAAGCAAAAAGCG+GGG | + | chr6_4:78137663-78137682 | Msa0997980:CDS | 35.0% | |
TTGTAGAGAGAGAGAATTGA+AGG | - | chr6_4:78136337-78136356 | None:intergenic | 35.0% | |
TCATTAGCATGTGGAATAGT+AGG | - | chr6_4:78136400-78136419 | None:intergenic | 35.0% | |
AGATTCTTCTCATTAGCATG+TGG | - | chr6_4:78136409-78136428 | None:intergenic | 35.0% | |
TTGGAAGACATAAGCAATGA+AGG | + | chr6_4:78136454-78136473 | Msa0997980:CDS | 35.0% | |
GCATTATATCAAACACATGG+AGG | - | chr6_4:78136535-78136554 | None:intergenic | 35.0% | |
GTGAACTTTCAACCATAACT+TGG | + | chr6_4:78136559-78136578 | Msa0997980:intron | 35.0% | |
! | GAGCTTTAACAATGCTACAT+TGG | - | chr6_4:78136896-78136915 | None:intergenic | 35.0% |
GTAGCATTGTTAAAGCTCTT+AGG | + | chr6_4:78136898-78136917 | Msa0997980:intron | 35.0% | |
! | GTAGAGTTTTCCGTCTATTT+AGG | + | chr6_4:78136920-78136939 | Msa0997980:intron | 35.0% |
ATGCTGTGTTGTGAAATTCA+CGG | - | chr6_4:78137073-78137092 | None:intergenic | 35.0% | |
TTATTGTGTTCGTGTTGAAG+AGG | + | chr6_4:78137190-78137209 | Msa0997980:intron | 35.0% | |
AAGAGGCCTAATTTGGTATT+TGG | + | chr6_4:78137207-78137226 | Msa0997980:intron | 35.0% | |
!! | AGTATTGCAGAGGTATTTGA+AGG | + | chr6_4:78137450-78137469 | Msa0997980:CDS | 35.0% |
!! | GTATTGCAGAGGTATTTGAA+GGG | + | chr6_4:78137451-78137470 | Msa0997980:CDS | 35.0% |
!! | TATTGCAGAGGTATTTGAAG+GGG | + | chr6_4:78137452-78137471 | Msa0997980:CDS | 35.0% |
AAATCCTGATCAGCATCTAT+TGG | - | chr6_4:78137481-78137500 | None:intergenic | 35.0% | |
GATTTGATGAGGGATATTCT+AGG | + | chr6_4:78137496-78137515 | Msa0997980:CDS | 35.0% | |
GAGTTTGATTCTGATTCAGA+GGG | + | chr6_4:78137598-78137617 | Msa0997980:CDS | 35.0% | |
CGTGATGTTAAAGCAAAAAG+CGG | + | chr6_4:78137661-78137680 | Msa0997980:CDS | 35.0% | |
GTGATGTTAAAGCAAAAAGC+GGG | + | chr6_4:78137662-78137681 | Msa0997980:CDS | 35.0% | |
TGATGTTAAAGCAAAAAGCG+GGG | + | chr6_4:78137663-78137682 | Msa0997980:CDS | 35.0% | |
CTAGAAGAGAAGAACGAAGT+GGG | - | chr6_4:78136361-78136380 | None:intergenic | 40.0% | |
ACTAGAAGAGAAGAACGAAG+TGG | - | chr6_4:78136362-78136381 | None:intergenic | 40.0% | |
TTAGCATGTGGAATAGTAGG+AGG | - | chr6_4:78136397-78136416 | None:intergenic | 40.0% | |
CGAGTAGCGCAAATTCAAAA+TGG | - | chr6_4:78136609-78136628 | None:intergenic | 40.0% | |
!! | TTGGGGTTTTTCGAAATTGG+TGG | + | chr6_4:78136662-78136681 | Msa0997980:intron | 40.0% |
! | GTTTAGCTTAACAAAGGTCC+CGG | + | chr6_4:78136863-78136882 | Msa0997980:intron | 40.0% |
! | TTTAGCTTAACAAAGGTCCC+GGG | + | chr6_4:78136864-78136883 | Msa0997980:intron | 40.0% |
TGCAATTCCAGAAGTCTTTG+AGG | + | chr6_4:78137426-78137445 | Msa0997980:CDS | 40.0% | |
AATACTGCCTCAAAGACTTC+TGG | - | chr6_4:78137436-78137455 | None:intergenic | 40.0% | |
ATGCTGATCAGGATTTGATG+AGG | + | chr6_4:78137485-78137504 | Msa0997980:CDS | 40.0% | |
TGCTGATCAGGATTTGATGA+GGG | + | chr6_4:78137486-78137505 | Msa0997980:CDS | 40.0% | |
! | ATGAGGGATATTCTAGGGAA+GGG | + | chr6_4:78137502-78137521 | Msa0997980:CDS | 40.0% |
CGAGTTTGATTCTGATTCAG+AGG | + | chr6_4:78137597-78137616 | Msa0997980:CDS | 40.0% | |
!! | CAGTGACTCTGATTTTGAAG+AGG | + | chr6_4:78137624-78137643 | Msa0997980:CDS | 40.0% |
CTAGAAGAGAAGAACGAAGT+GGG | - | chr6_4:78136361-78136380 | None:intergenic | 40.0% | |
ACTAGAAGAGAAGAACGAAG+TGG | - | chr6_4:78136362-78136381 | None:intergenic | 40.0% | |
TTAGCATGTGGAATAGTAGG+AGG | - | chr6_4:78136397-78136416 | None:intergenic | 40.0% | |
CGAGTAGCGCAAATTCAAAA+TGG | - | chr6_4:78136609-78136628 | None:intergenic | 40.0% | |
!! | TTGGGGTTTTTCGAAATTGG+TGG | + | chr6_4:78136662-78136681 | Msa0997980:intron | 40.0% |
! | GTTTAGCTTAACAAAGGTCC+CGG | + | chr6_4:78136863-78136882 | Msa0997980:intron | 40.0% |
! | TTTAGCTTAACAAAGGTCCC+GGG | + | chr6_4:78136864-78136883 | Msa0997980:intron | 40.0% |
TGCAATTCCAGAAGTCTTTG+AGG | + | chr6_4:78137426-78137445 | Msa0997980:CDS | 40.0% | |
AATACTGCCTCAAAGACTTC+TGG | - | chr6_4:78137436-78137455 | None:intergenic | 40.0% | |
ATGCTGATCAGGATTTGATG+AGG | + | chr6_4:78137485-78137504 | Msa0997980:CDS | 40.0% | |
TGCTGATCAGGATTTGATGA+GGG | + | chr6_4:78137486-78137505 | Msa0997980:CDS | 40.0% | |
! | ATGAGGGATATTCTAGGGAA+GGG | + | chr6_4:78137502-78137521 | Msa0997980:CDS | 40.0% |
CGAGTTTGATTCTGATTCAG+AGG | + | chr6_4:78137597-78137616 | Msa0997980:CDS | 40.0% | |
!! | CAGTGACTCTGATTTTGAAG+AGG | + | chr6_4:78137624-78137643 | Msa0997980:CDS | 40.0% |
AGGTGTGAGAGAGACGAATA+CGG | - | chr6_4:78136303-78136322 | None:intergenic | 45.0% | |
!! | ATGCTACATTGGTTCGAACC+CGG | - | chr6_4:78136885-78136904 | None:intergenic | 45.0% |
ACCAATTACTGTAGCCCTGT+GGG | - | chr6_4:78136947-78136966 | None:intergenic | 45.0% | |
! | AGTAATTGGTCTCCGTGGTT+GGG | + | chr6_4:78136957-78136976 | Msa0997980:intron | 45.0% |
CGTGTTGAAGAGGCCTAATT+TGG | + | chr6_4:78137200-78137219 | Msa0997980:intron | 45.0% | |
!! | TCTTTGAGGCAGTATTGCAG+AGG | + | chr6_4:78137440-78137459 | Msa0997980:CDS | 45.0% |
GAAGCCAATAGATGCTGATC+AGG | + | chr6_4:78137474-78137493 | Msa0997980:CDS | 45.0% | |
! | GATGAGGGATATTCTAGGGA+AGG | + | chr6_4:78137501-78137520 | Msa0997980:CDS | 45.0% |
! | TGAGGGATATTCTAGGGAAG+GGG | + | chr6_4:78137503-78137522 | Msa0997980:CDS | 45.0% |
AGAGTCGAATGACGATGATG+AGG | + | chr6_4:78137528-78137547 | Msa0997980:CDS | 45.0% | |
TCGAATGACGATGATGAGGT+AGG | + | chr6_4:78137532-78137551 | Msa0997980:CDS | 45.0% | |
CGAATGACGATGATGAGGTA+GGG | + | chr6_4:78137533-78137552 | Msa0997980:CDS | 45.0% | |
AGATTCGGAAGACGATGATG+AGG | + | chr6_4:78137564-78137583 | Msa0997980:CDS | 45.0% | |
AGGTGTGAGAGAGACGAATA+CGG | - | chr6_4:78136303-78136322 | None:intergenic | 45.0% | |
!! | ATGCTACATTGGTTCGAACC+CGG | - | chr6_4:78136885-78136904 | None:intergenic | 45.0% |
ACCAATTACTGTAGCCCTGT+GGG | - | chr6_4:78136947-78136966 | None:intergenic | 45.0% | |
! | AGTAATTGGTCTCCGTGGTT+GGG | + | chr6_4:78136957-78136976 | Msa0997980:intron | 45.0% |
CGTGTTGAAGAGGCCTAATT+TGG | + | chr6_4:78137200-78137219 | Msa0997980:intron | 45.0% | |
!! | TCTTTGAGGCAGTATTGCAG+AGG | + | chr6_4:78137440-78137459 | Msa0997980:CDS | 45.0% |
GAAGCCAATAGATGCTGATC+AGG | + | chr6_4:78137474-78137493 | Msa0997980:CDS | 45.0% | |
! | GATGAGGGATATTCTAGGGA+AGG | + | chr6_4:78137501-78137520 | Msa0997980:CDS | 45.0% |
! | TGAGGGATATTCTAGGGAAG+GGG | + | chr6_4:78137503-78137522 | Msa0997980:CDS | 45.0% |
AGAGTCGAATGACGATGATG+AGG | + | chr6_4:78137528-78137547 | Msa0997980:CDS | 45.0% | |
TCGAATGACGATGATGAGGT+AGG | + | chr6_4:78137532-78137551 | Msa0997980:CDS | 45.0% | |
CGAATGACGATGATGAGGTA+GGG | + | chr6_4:78137533-78137552 | Msa0997980:CDS | 45.0% | |
AGATTCGGAAGACGATGATG+AGG | + | chr6_4:78137564-78137583 | Msa0997980:CDS | 45.0% | |
GTGGAATAGTAGGAGGTGGA+GGG | - | chr6_4:78136390-78136409 | None:intergenic | 50.0% | |
TGTGGAATAGTAGGAGGTGG+AGG | - | chr6_4:78136391-78136410 | None:intergenic | 50.0% | |
GCATGTGGAATAGTAGGAGG+TGG | - | chr6_4:78136394-78136413 | None:intergenic | 50.0% | |
!! | TGCTACATTGGTTCGAACCC+GGG | - | chr6_4:78136884-78136903 | None:intergenic | 50.0% |
TCCGTCTATTTAGGTCCCAC+AGG | + | chr6_4:78136929-78136948 | Msa0997980:intron | 50.0% | |
CCCTGTGGGACCTAAATAGA+CGG | - | chr6_4:78136933-78136952 | None:intergenic | 50.0% | |
CCGTCTATTTAGGTCCCACA+GGG | + | chr6_4:78136930-78136949 | Msa0997980:intron | 50.0% | |
TCCCACAGGGCTACAGTAAT+TGG | + | chr6_4:78136943-78136962 | Msa0997980:intron | 50.0% | |
GACCAATTACTGTAGCCCTG+TGG | - | chr6_4:78136948-78136967 | None:intergenic | 50.0% | |
! | GCTACAGTAATTGGTCTCCG+TGG | + | chr6_4:78136952-78136971 | Msa0997980:intron | 50.0% |
! | CAGTAATTGGTCTCCGTGGT+TGG | + | chr6_4:78136956-78136975 | Msa0997980:intron | 50.0% |
! | AGTTGAAGAGGCGTGTTGCA+AGG | + | chr6_4:78137383-78137402 | Msa0997980:CDS | 50.0% |
TGACGATGATGAGGTAGGGA+AGG | + | chr6_4:78137537-78137556 | Msa0997980:CDS | 50.0% | |
GACGATGATGAGGTAGGGAA+GGG | + | chr6_4:78137538-78137557 | Msa0997980:CDS | 50.0% | |
GGTAGGGAAGGGAACAGATT+CGG | + | chr6_4:78137549-78137568 | Msa0997980:CDS | 50.0% | |
GTGGAATAGTAGGAGGTGGA+GGG | - | chr6_4:78136390-78136409 | None:intergenic | 50.0% | |
TGTGGAATAGTAGGAGGTGG+AGG | - | chr6_4:78136391-78136410 | None:intergenic | 50.0% | |
GCATGTGGAATAGTAGGAGG+TGG | - | chr6_4:78136394-78136413 | None:intergenic | 50.0% | |
!! | TGCTACATTGGTTCGAACCC+GGG | - | chr6_4:78136884-78136903 | None:intergenic | 50.0% |
TCCGTCTATTTAGGTCCCAC+AGG | + | chr6_4:78136929-78136948 | Msa0997980:intron | 50.0% | |
CCCTGTGGGACCTAAATAGA+CGG | - | chr6_4:78136933-78136952 | None:intergenic | 50.0% | |
CCGTCTATTTAGGTCCCACA+GGG | + | chr6_4:78136930-78136949 | Msa0997980:intron | 50.0% | |
TCCCACAGGGCTACAGTAAT+TGG | + | chr6_4:78136943-78136962 | Msa0997980:intron | 50.0% | |
GACCAATTACTGTAGCCCTG+TGG | - | chr6_4:78136948-78136967 | None:intergenic | 50.0% | |
! | GCTACAGTAATTGGTCTCCG+TGG | + | chr6_4:78136952-78136971 | Msa0997980:intron | 50.0% |
! | CAGTAATTGGTCTCCGTGGT+TGG | + | chr6_4:78136956-78136975 | Msa0997980:intron | 50.0% |
! | AGTTGAAGAGGCGTGTTGCA+AGG | + | chr6_4:78137383-78137402 | Msa0997980:CDS | 50.0% |
TGACGATGATGAGGTAGGGA+AGG | + | chr6_4:78137537-78137556 | Msa0997980:CDS | 50.0% | |
GACGATGATGAGGTAGGGAA+GGG | + | chr6_4:78137538-78137557 | Msa0997980:CDS | 50.0% | |
GGTAGGGAAGGGAACAGATT+CGG | + | chr6_4:78137549-78137568 | Msa0997980:CDS | 50.0% | |
GAGACGAATACGGCGTGCTT+GGG | - | chr6_4:78136293-78136312 | None:intergenic | 55.0% | |
AGAGACGAATACGGCGTGCT+TGG | - | chr6_4:78136294-78136313 | None:intergenic | 55.0% | |
CGTGTTGCAAGGCTTCGAGA+AGG | + | chr6_4:78137394-78137413 | Msa0997980:CDS | 55.0% | |
GAGACGAATACGGCGTGCTT+GGG | - | chr6_4:78136293-78136312 | None:intergenic | 55.0% | |
AGAGACGAATACGGCGTGCT+TGG | - | chr6_4:78136294-78136313 | None:intergenic | 55.0% | |
CGTGTTGCAAGGCTTCGAGA+AGG | + | chr6_4:78137394-78137413 | Msa0997980:CDS | 55.0% | |
TTGGTCTCCGTGGTTGGGCG+CGG | + | chr6_4:78136962-78136981 | Msa0997980:intron | 65.0% | |
GTATCCTCCGCGCCCAACCA+CGG | - | chr6_4:78136972-78136991 | None:intergenic | 65.0% | |
TTGGTCTCCGTGGTTGGGCG+CGG | + | chr6_4:78136962-78136981 | Msa0997980:intron | 65.0% | |
GTATCCTCCGCGCCCAACCA+CGG | - | chr6_4:78136972-78136991 | None:intergenic | 65.0% | |
GGTTGGGCGCGGAGGATACG+AGG | + | chr6_4:78136973-78136992 | Msa0997980:intron | 70.0% | |
GGTTGGGCGCGGAGGATACG+AGG | + | chr6_4:78136973-78136992 | Msa0997980:intron | 70.0% | |
GTCTCCGTGGTTGGGCGCGG+AGG | + | chr6_4:78136965-78136984 | Msa0997980:intron | 75.0% | |
GTCTCCGTGGTTGGGCGCGG+AGG | + | chr6_4:78136965-78136984 | Msa0997980:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_4 | gene | 78136220 | 78137702 | 78136220 | ID=Msa0997980;Name=Msa0997980 |
chr6_4 | mRNA | 78136220 | 78137702 | 78136220 | ID=Msa0997980-mRNA-1;Parent=Msa0997980;Name=Msa0997980-mRNA-1;_AED=0.00;_eAED=0.00;_QI=39|1|0.5|1|1|1|2|0|178 |
chr6_4 | exon | 78136220 | 78136475 | 78136220 | ID=Msa0997980-mRNA-1:exon:14779;Parent=Msa0997980-mRNA-1 |
chr6_4 | exon | 78137383 | 78137702 | 78137383 | ID=Msa0997980-mRNA-1:exon:14780;Parent=Msa0997980-mRNA-1 |
chr6_4 | five_prime_UTR | 78136220 | 78136258 | 78136220 | ID=Msa0997980-mRNA-1:five_prime_utr;Parent=Msa0997980-mRNA-1 |
chr6_4 | CDS | 78136259 | 78136475 | 78136259 | ID=Msa0997980-mRNA-1:cds;Parent=Msa0997980-mRNA-1 |
chr6_4 | CDS | 78137383 | 78137702 | 78137383 | ID=Msa0997980-mRNA-1:cds;Parent=Msa0997980-mRNA-1 |
Gene Sequence |
Protein sequence |