AlfalfaGEDB | Msa0997980

M. sativa cultivar zhongmu-4 / Msa0997980

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0997980	XP_003620416.1	89.944	179	17	1	1	178	1	179	1.99e-82	251

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0997980	G7KMM1	89.944	179	17	1	1	178	1	179	9.49e-83	251

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa0997980	0.837201	5.978512e-57	-8.615850e-47
Msa0006070	Msa0997980	0.805657	1.201111e-49	-8.615850e-47
Msa0011960	Msa0997980	0.806886	6.616327e-50	-8.615850e-47
Msa0032580	Msa0997980	0.804485	2.111738e-49	-8.615850e-47
Msa0033110	Msa0997980	0.817968	2.503479e-52	-8.615850e-47
Msa0033260	Msa0997980	0.812396	4.329327e-51	-8.615850e-47
Msa0037570	Msa0997980	-0.804085	2.558693e-49	-8.615850e-47
Msa0054480	Msa0997980	0.818263	2.147384e-52	-8.615850e-47
Msa0063530	Msa0997980	0.814012	1.913521e-51	-8.615850e-47
Msa0076320	Msa0997980	0.807645	4.569037e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0997980	MtrunA17_Chr6g0483651	89.944	179	17	1	1	178	1	179	1.83e-86	251

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0997980	AT3G18240.2	35.625	160	90	5	1	148	1	159	3.82e-11	61.2
Msa0997980	AT3G18240.1	35.625	160	90	5	1	148	1	159	3.82e-11	61.2

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Find 41 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCCTGATCAGCATCTAT+TGG	0.420664	6_4:-78137478	None:intergenic
AATACTGCCTCAAAGACTTC+TGG	0.481399	6_4:-78137433	None:intergenic
AATTGAAGGTGAAGATTTGA+AGG	0.420520	6_4:-78136320	None:intergenic
ACTAGAAGAGAAGAACGAAG+TGG	0.662176	6_4:-78136359	None:intergenic
AGAGACGAATACGGCGTGCT+TGG	0.419965	6_4:-78136291	None:intergenic
AGAGTCGAATGACGATGATG+AGG	0.661123	6_4:+78137528	Msa0997980:CDS
AGATTCGGAAGACGATGATG+AGG	0.621691	6_4:+78137564	Msa0997980:CDS
AGATTCTTCTCATTAGCATG+TGG	0.610398	6_4:-78136406	None:intergenic
AGGTGTGAGAGAGACGAATA+CGG	0.519422	6_4:-78136300	None:intergenic
AGTATTGCAGAGGTATTTGA+AGG	0.515107	6_4:+78137450	Msa0997980:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTGAAGGTGAAGATTTGA+AGG	-	chr6_4:78136323-78136342	None:intergenic	30.0%
TCAACAATCACTAGATGATT+TGG	+	chr6_4:78136435-78136454	Msa0997980:CDS	30.0%
CCGAAACACTAAGAATAATT+TGG	-	chr6_4:78136487-78136506	None:intergenic	30.0%
CAAGCATTATATCAAACACA+TGG	-	chr6_4:78136538-78136557	None:intergenic	30.0%
CGGAAACATTATAACAAATC+AGG	-	chr6_4:78137053-78137072	None:intergenic	30.0%
TTCATGTTAAAGAGTTGAAG+AGG	+	chr6_4:78137371-78137390	Msa0997980:intron	30.0%
ATTTGATGAGGGATATTCTA+GGG	+	chr6_4:78137497-78137516	Msa0997980:CDS	30.0%
AATTGAAGGTGAAGATTTGA+AGG	-	chr6_4:78136323-78136342	None:intergenic	30.0%
TCAACAATCACTAGATGATT+TGG	+	chr6_4:78136435-78136454	Msa0997980:CDS	30.0%
CCGAAACACTAAGAATAATT+TGG	-	chr6_4:78136487-78136506	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	78136220	78137702	78136220	ID=Msa0997980;Name=Msa0997980
chr6_4	mRNA	78136220	78137702	78136220	ID=Msa0997980-mRNA-1;Parent=Msa0997980;Name=Msa0997980-mRNA-1;_AED=0.00;_eAED=0.00;_QI=39\|1\|0.5\|1\|1\|1\|2\|0\|178
chr6_4	exon	78136220	78136475	78136220	ID=Msa0997980-mRNA-1:exon:14779;Parent=Msa0997980-mRNA-1
chr6_4	exon	78137383	78137702	78137383	ID=Msa0997980-mRNA-1:exon:14780;Parent=Msa0997980-mRNA-1
chr6_4	five_prime_UTR	78136220	78136258	78136220	ID=Msa0997980-mRNA-1:five_prime_utr;Parent=Msa0997980-mRNA-1
chr6_4	CDS	78136259	78136475	78136259	ID=Msa0997980-mRNA-1:cds;Parent=Msa0997980-mRNA-1
chr6_4	CDS	78137383	78137702	78137383	ID=Msa0997980-mRNA-1:cds;Parent=Msa0997980-mRNA-1

Gene Sequence

>Msa0997980

ATGACTTCTATTCTTCTAAGAAACATCTCATCCCAAGCACGCCGTATTCGTCTCTCTCACACCTTCAAATCTTCACCTTCAATTCTCTCTCTCTACAAACCCACTTCGTTCTTCTCTTCTAGTAGTGACCCTCCACCTCCTACTATTCCACATGCTAATGAGAAGAATCTACAAAATCAACAATCACTAGATGATTTGGAAGACATAAGCAATGAAGAGTTGAAGAGGCGTGTTGCAAGGCTTCGAGAAGGTGATGATGATGCAATTCCAGAAGTCTTTGAGGCAGTATTGCAGAGGTATTTGAAGGGGAAGCCAATAGATGCTGATCAGGATTTGATGAGGGATATTCTAGGGAAGGGGACAGAGTCGAATGACGATGATGAGGTAGGGAAGGGAACAGATTCGGAAGACGATGATGAGGAAAATGAAGACGAGTTTGATTCTGATTCAGAGGGAATCAGTGACTCTGATTTTGAAGAGGAAGAAGCTTTTAATCGTGATGTTAAAGCAAAAAGCGGGGTCAATTTAATGAAGTGA

Protein sequence

>Msa0997980

MTSILLRNISSQARRIRLSHTFKSSPSILSLYKPTSFFSSSSDPPPPTIPHANEKNLQNQQSLDDLEDISNEELKRRVARLREGDDDAIPEVFEAVLQRYLKGKPIDADQDLMRDILGKGTESNDDDEVGKGTDSEDDDEENEDEFDSDSEGISDSDFEEEEAFNRDVKAKSGVNLMK*