Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1316640 | sp|O81223|CNBL4_ARATH | 57.692 | 234 | 79 | 1 | 1 | 234 | 1 | 214 | 2.65e-92 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1316640 | A0A396GEZ0 | 97.046 | 237 | 6 | 1 | 1 | 237 | 1 | 236 | 5.48e-166 | 467 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007440 | Msa1316640 | 0.826362 | 2.828776e-54 | -8.615850e-47 |
| Msa0033110 | Msa1316640 | 0.821385 | 4.153817e-53 | -8.615850e-47 |
| Msa0033260 | Msa1316640 | 0.817617 | 3.004894e-52 | -8.615850e-47 |
| Msa0037590 | Msa1316640 | -0.801352 | 9.374576e-49 | -8.615850e-47 |
| Msa0044330 | Msa1316640 | 0.832636 | 8.441345e-56 | -8.615850e-47 |
| Msa0058160 | Msa1316640 | 0.806021 | 1.006958e-49 | -8.615850e-47 |
| Msa0071250 | Msa1316640 | 0.800279 | 1.552892e-48 | -8.615850e-47 |
| Msa0089820 | Msa1316640 | 0.817098 | 3.932792e-52 | -8.615850e-47 |
| Msa0091410 | Msa1316640 | 0.816400 | 5.639918e-52 | -8.615850e-47 |
| Msa0104240 | Msa1316640 | 0.801452 | 8.944101e-49 | -8.615850e-47 |
| Msa0610130 | Msa1316640 | 0.818401 | 1.998849e-52 | -8.615850e-47 |
| Msa0610180 | Msa1316640 | 0.809248 | 2.078463e-50 | -8.615850e-47 |
| Msa0641670 | Msa1316640 | 0.802168 | 6.377187e-49 | -8.615850e-47 |
| Msa0643320 | Msa1316640 | 0.801676 | 8.045708e-49 | -8.615850e-47 |
| Msa0649220 | Msa1316640 | 0.808380 | 3.186984e-50 | -8.615850e-47 |
| Msa0657870 | Msa1316640 | 0.809477 | 1.856055e-50 | -8.615850e-47 |
| Msa0667740 | Msa1316640 | 0.803281 | 3.756159e-49 | -8.615850e-47 |
| Msa0683600 | Msa1316640 | 0.823320 | 1.476204e-53 | -8.615850e-47 |
| Msa0703910 | Msa1316640 | 0.801087 | 1.062358e-48 | -8.615850e-47 |
| Msa0711150 | Msa1316640 | 0.802712 | 4.926669e-49 | -8.615850e-47 |
| Msa0755180 | Msa1316640 | 0.824050 | 9.955576e-54 | -8.615850e-47 |
| Msa0760350 | Msa1316640 | 0.812363 | 4.401662e-51 | -8.615850e-47 |
| Msa0801730 | Msa1316640 | 0.819640 | 1.044414e-52 | -8.615850e-47 |
| Msa0817460 | Msa1316640 | 0.803343 | 3.647875e-49 | -8.615850e-47 |
| Msa0820850 | Msa1316640 | 0.804024 | 2.634496e-49 | -8.615850e-47 |
| Msa0125650 | Msa1316640 | 0.801968 | 7.009980e-49 | -8.615850e-47 |
| Msa0127780 | Msa1316640 | 0.810021 | 1.418080e-50 | -8.615850e-47 |
| Msa0129190 | Msa1316640 | -0.812444 | 4.225807e-51 | -8.615850e-47 |
| Msa0140500 | Msa1316640 | -0.824488 | 7.857674e-54 | -8.615850e-47 |
| Msa0160960 | Msa1316640 | 0.806126 | 9.569125e-50 | -8.615850e-47 |
| Msa0178800 | Msa1316640 | 0.810467 | 1.136112e-50 | -8.615850e-47 |
| Msa0187830 | Msa1316640 | 0.817252 | 3.630937e-52 | -8.615850e-47 |
| Msa0190530 | Msa1316640 | 0.806840 | 6.764367e-50 | -8.615850e-47 |
| Msa0204960 | Msa1316640 | 0.804601 | 1.997495e-49 | -8.615850e-47 |
| Msa0217700 | Msa1316640 | 0.811237 | 7.740842e-51 | -8.615850e-47 |
| Msa0229170 | Msa1316640 | 0.802494 | 5.462860e-49 | -8.615850e-47 |
| Msa0236510 | Msa1316640 | -0.829245 | 5.733117e-55 | -8.615850e-47 |
| Msa1231840 | Msa1316640 | 0.825525 | 4.469528e-54 | -8.615850e-47 |
| Msa1246360 | Msa1316640 | 0.816840 | 4.492958e-52 | -8.615850e-47 |
| Msa1254730 | Msa1316640 | 0.806502 | 7.972787e-50 | -8.615850e-47 |
| Msa1280320 | Msa1316640 | 0.802849 | 4.614737e-49 | -8.615850e-47 |
| Msa1305810 | Msa1316640 | 0.803724 | 3.041447e-49 | -8.615850e-47 |
| Msa1316360 | Msa1316640 | 0.801399 | 9.169859e-49 | -8.615850e-47 |
| Msa1316640 | Msa1346840 | 0.807680 | 4.490115e-50 | -8.615850e-47 |
| Msa1316640 | Msa1355890 | 0.828037 | 1.123314e-54 | -8.615850e-47 |
| Msa1316640 | Msa1379500 | 0.827556 | 1.465449e-54 | -8.615850e-47 |
| Msa1316640 | Msa1396400 | -0.802616 | 5.155579e-49 | -8.615850e-47 |
| Msa1316640 | Msa1445390 | -0.822989 | 1.763513e-53 | -8.615850e-47 |
| Msa1316640 | Msa1448560 | 0.803187 | 3.929564e-49 | -8.615850e-47 |
| Msa1316640 | Msa1449340 | -0.823246 | 1.535935e-53 | -8.615850e-47 |
| Msa1316640 | Msa1457160 | 0.840839 | 6.828014e-58 | -8.615850e-47 |
| Msa0381610 | Msa1316640 | -0.830883 | 2.284516e-55 | -8.615850e-47 |
| Msa0383800 | Msa1316640 | 0.812899 | 3.361677e-51 | -8.615850e-47 |
| Msa0389210 | Msa1316640 | 0.806124 | 9.577857e-50 | -8.615850e-47 |
| Msa0389610 | Msa1316640 | -0.800625 | 1.320420e-48 | -8.615850e-47 |
| Msa0394470 | Msa1316640 | 0.814295 | 1.656877e-51 | -8.615850e-47 |
| Msa0411430 | Msa1316640 | 0.824297 | 8.712603e-54 | -8.615850e-47 |
| Msa0434180 | Msa1316640 | 0.816222 | 6.179491e-52 | -8.615850e-47 |
| Msa0994370 | Msa1316640 | 0.819233 | 1.293515e-52 | -8.615850e-47 |
| Msa0994910 | Msa1316640 | 0.801986 | 6.949242e-49 | -8.615850e-47 |
| Msa1025080 | Msa1316640 | 0.836908 | 7.103640e-57 | -8.615850e-47 |
| Msa1026940 | Msa1316640 | 0.812571 | 3.965440e-51 | -8.615850e-47 |
| Msa1029050 | Msa1316640 | 0.832688 | 8.194460e-56 | -8.615850e-47 |
| Msa1076960 | Msa1316640 | 0.810026 | 1.414202e-50 | -8.615850e-47 |
| Msa1081790 | Msa1316640 | -0.805393 | 1.364519e-49 | -8.615850e-47 |
| Msa1089460 | Msa1316640 | 0.802195 | 6.295504e-49 | -8.615850e-47 |
| Msa0241140 | Msa1316640 | 0.802985 | 4.326423e-49 | -8.615850e-47 |
| Msa0256330 | Msa1316640 | 0.804829 | 1.790354e-49 | -8.615850e-47 |
| Msa0257520 | Msa1316640 | 0.812479 | 4.152855e-51 | -8.615850e-47 |
| Msa0277010 | Msa1316640 | -0.803114 | 4.068853e-49 | -8.615850e-47 |
| Msa0295330 | Msa1316640 | 0.825330 | 4.972864e-54 | -8.615850e-47 |
| Msa0295460 | Msa1316640 | -0.805347 | 1.394835e-49 | -8.615850e-47 |
| Msa0296480 | Msa1316640 | 0.829664 | 4.535539e-55 | -8.615850e-47 |
| Msa0296820 | Msa1316640 | 0.817547 | 3.115932e-52 | -8.615850e-47 |
| Msa0305410 | Msa1316640 | 0.801934 | 7.124610e-49 | -8.615850e-47 |
| Msa0317970 | Msa1316640 | 0.814156 | 1.778048e-51 | -8.615850e-47 |
| Msa0322240 | Msa1316640 | 0.804209 | 2.411500e-49 | -8.615850e-47 |
| Msa0334770 | Msa1316640 | 0.821635 | 3.635176e-53 | -8.615850e-47 |
| Msa0340380 | Msa1316640 | 0.808377 | 3.191145e-50 | -8.615850e-47 |
| Msa0357900 | Msa1316640 | 0.802871 | 4.567927e-49 | -8.615850e-47 |
| Msa0358860 | Msa1316640 | 0.804121 | 2.515206e-49 | -8.615850e-47 |
| Msa1109090 | Msa1316640 | 0.852524 | 4.362848e-61 | -8.615850e-47 |
| Msa1111870 | Msa1316640 | 0.823563 | 1.294864e-53 | -8.615850e-47 |
| Msa1125960 | Msa1316640 | -0.815735 | 7.939916e-52 | -8.615850e-47 |
| Msa1152920 | Msa1316640 | 0.828510 | 8.637153e-55 | -8.615850e-47 |
| Msa1166090 | Msa1316640 | -0.806100 | 9.691659e-50 | -8.615850e-47 |
| Msa1176720 | Msa1316640 | 0.814421 | 1.553923e-51 | -8.615850e-47 |
| Msa1181250 | Msa1316640 | 0.818311 | 2.094435e-52 | -8.615850e-47 |
| Msa1181330 | Msa1316640 | 0.818919 | 1.524133e-52 | -8.615850e-47 |
| Msa1185110 | Msa1316640 | 0.810289 | 1.241065e-50 | -8.615850e-47 |
| Msa1200250 | Msa1316640 | 0.825984 | 3.479814e-54 | -8.615850e-47 |
| Msa1207310 | Msa1316640 | 0.816461 | 5.463752e-52 | -8.615850e-47 |
| Msa1207470 | Msa1316640 | -0.801807 | 7.565597e-49 | -8.615850e-47 |
| Msa1210110 | Msa1316640 | 0.823065 | 1.693005e-53 | -8.615850e-47 |
| Msa0510930 | Msa1316640 | 0.837700 | 4.453210e-57 | -8.615850e-47 |
| Msa0545700 | Msa1316640 | 0.813834 | 2.094126e-51 | -8.615850e-47 |
| Msa0849030 | Msa1316640 | 0.807163 | 5.780551e-50 | -8.615850e-47 |
| Msa0865030 | Msa1316640 | 0.805556 | 1.260909e-49 | -8.615850e-47 |
| Msa0888260 | Msa1316640 | 0.827849 | 1.246595e-54 | -8.615850e-47 |
| Msa0890550 | Msa1316640 | 0.806071 | 9.826670e-50 | -8.615850e-47 |
| Msa0894710 | Msa1316640 | 0.803250 | 3.812294e-49 | -8.615850e-47 |
| Msa0943190 | Msa1316640 | 0.808061 | 3.726222e-50 | -8.615850e-47 |
| Msa0960390 | Msa1316640 | 0.816995 | 4.148859e-52 | -8.615850e-47 |
| Msa0960740 | Msa1316640 | 0.802986 | 4.323782e-49 | -8.615850e-47 |
| Msa0962840 | Msa1316640 | 0.804605 | 1.994086e-49 | -8.615850e-47 |
| Msa0969370 | Msa1316640 | 0.828370 | 9.333887e-55 | -8.615850e-47 |
| Msa0974950 | Msa1316640 | 0.801718 | 7.888790e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1316640 | MtrunA17_Chr8g0346911 | 97.046 | 237 | 6 | 1 | 1 | 237 | 1 | 236 | 1.06e-169 | 467 |
| Msa1316640 | MtrunA17_Chr8g0388331 | 61.538 | 195 | 75 | 0 | 40 | 234 | 16 | 210 | 1.31e-85 | 253 |
| Msa1316640 | MtrunA17_Chr4g0055421 | 56.923 | 195 | 84 | 0 | 40 | 234 | 16 | 210 | 6.42e-79 | 236 |
| Msa1316640 | MtrunA17_Chr3g0102821 | 55.612 | 196 | 87 | 0 | 40 | 235 | 31 | 226 | 9.82e-77 | 231 |
| Msa1316640 | MtrunA17_Chr4g0076551 | 55.440 | 193 | 86 | 0 | 43 | 235 | 35 | 227 | 1.59e-76 | 230 |
| Msa1316640 | MtrunA17_Chr1g0151621 | 57.732 | 194 | 82 | 0 | 39 | 232 | 54 | 247 | 1.81e-76 | 231 |
| Msa1316640 | MtrunA17_Chr5g0446931 | 55.612 | 196 | 87 | 0 | 40 | 235 | 31 | 226 | 4.24e-76 | 229 |
| Msa1316640 | MtrunA17_Chr2g0290771 | 54.348 | 184 | 84 | 0 | 52 | 235 | 8 | 191 | 6.94e-71 | 215 |
| Msa1316640 | MtrunA17_Chr8g0341941 | 52.083 | 192 | 92 | 0 | 45 | 236 | 66 | 257 | 6.30e-64 | 199 |
| Msa1316640 | MtrunA17_Chr2g0290781 | 49.223 | 193 | 98 | 0 | 45 | 237 | 41 | 233 | 2.52e-63 | 197 |
| Msa1316640 | MtrunA17_Chr2g0290751 | 55.357 | 168 | 75 | 0 | 49 | 216 | 43 | 210 | 2.58e-61 | 191 |
| Msa1316640 | MtrunA17_Chr2g0290761 | 54.762 | 168 | 76 | 0 | 49 | 216 | 43 | 210 | 8.38e-60 | 187 |
| Msa1316640 | MtrunA17_Chr3g0126801 | 71.000 | 100 | 29 | 0 | 136 | 235 | 6 | 105 | 2.29e-46 | 150 |
| Msa1316640 | MtrunA17_Chr4g0063121 | 41.111 | 180 | 86 | 1 | 55 | 234 | 8 | 167 | 7.19e-44 | 147 |
| Msa1316640 | MtrunA17_Chr3g0126811 | 65.000 | 100 | 35 | 0 | 40 | 139 | 17 | 116 | 2.14e-39 | 132 |
| Msa1316640 | MtrunA17_Chr5g0399921 | 53.191 | 94 | 44 | 0 | 40 | 133 | 15 | 108 | 2.90e-28 | 103 |
| Msa1316640 | MtrunA17_Chr8g0388311 | 52.439 | 82 | 39 | 0 | 156 | 237 | 1 | 82 | 1.15e-24 | 93.6 |
| Msa1316640 | MtrunA17_Chr8g0388321 | 41.463 | 123 | 47 | 2 | 40 | 153 | 58 | 164 | 2.04e-24 | 95.5 |
| Msa1316640 | MtrunA17_Chr5g0399931 | 55.738 | 61 | 27 | 0 | 156 | 216 | 1 | 61 | 3.53e-16 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1316640 | AT5G24270.4 | 57.692 | 234 | 79 | 1 | 1 | 234 | 1 | 214 | 2.69e-93 | 273 |
| Msa1316640 | AT5G24270.1 | 57.692 | 234 | 79 | 1 | 1 | 234 | 1 | 214 | 2.69e-93 | 273 |
| Msa1316640 | AT5G24270.2 | 57.692 | 234 | 79 | 1 | 1 | 234 | 1 | 214 | 2.69e-93 | 273 |
| Msa1316640 | AT5G24270.5 | 63.978 | 186 | 67 | 0 | 49 | 234 | 4 | 189 | 2.00e-86 | 255 |
| Msa1316640 | AT1G64480.2 | 60.000 | 195 | 78 | 0 | 40 | 234 | 20 | 214 | 4.55e-79 | 237 |
| Msa1316640 | AT1G64480.3 | 60.000 | 195 | 78 | 0 | 40 | 234 | 20 | 214 | 4.55e-79 | 237 |
| Msa1316640 | AT1G64480.1 | 60.000 | 195 | 78 | 0 | 40 | 234 | 20 | 214 | 4.55e-79 | 237 |
| Msa1316640 | AT5G47100.1 | 56.842 | 190 | 82 | 0 | 45 | 234 | 21 | 210 | 9.89e-76 | 228 |
| Msa1316640 | AT4G33000.2 | 58.247 | 194 | 81 | 0 | 41 | 234 | 53 | 246 | 1.04e-75 | 229 |
| Msa1316640 | AT4G17615.4 | 55.385 | 195 | 87 | 0 | 40 | 234 | 16 | 210 | 2.10e-75 | 228 |
| Msa1316640 | AT4G17615.1 | 55.385 | 195 | 87 | 0 | 40 | 234 | 16 | 210 | 2.10e-75 | 228 |
| Msa1316640 | AT4G17615.5 | 55.385 | 195 | 87 | 0 | 40 | 234 | 16 | 210 | 2.10e-75 | 228 |
| Msa1316640 | AT4G33000.1 | 58.247 | 194 | 81 | 0 | 41 | 234 | 63 | 256 | 2.27e-75 | 229 |
| Msa1316640 | AT5G24270.3 | 63.354 | 161 | 59 | 0 | 74 | 234 | 7 | 167 | 2.57e-75 | 226 |
| Msa1316640 | AT4G26570.1 | 54.359 | 195 | 89 | 0 | 41 | 235 | 32 | 226 | 7.67e-75 | 226 |
| Msa1316640 | AT5G55990.1 | 54.359 | 195 | 89 | 0 | 41 | 235 | 32 | 226 | 2.23e-73 | 223 |
| Msa1316640 | AT5G55990.2 | 54.359 | 195 | 89 | 0 | 41 | 235 | 32 | 226 | 2.23e-73 | 223 |
| Msa1316640 | AT4G26570.2 | 53.266 | 199 | 89 | 1 | 41 | 235 | 32 | 230 | 1.43e-72 | 221 |
| Msa1316640 | AT1G64480.4 | 60.452 | 177 | 70 | 0 | 40 | 216 | 20 | 196 | 1.42e-70 | 214 |
| Msa1316640 | AT4G17615.3 | 55.801 | 181 | 80 | 0 | 40 | 220 | 16 | 196 | 8.17e-68 | 209 |
| Msa1316640 | AT4G01420.1 | 47.739 | 199 | 104 | 0 | 29 | 227 | 4 | 202 | 1.85e-62 | 194 |
| Msa1316640 | AT4G16350.2 | 47.642 | 212 | 98 | 2 | 26 | 237 | 24 | 222 | 5.03e-62 | 194 |
| Msa1316640 | AT4G16350.1 | 47.642 | 212 | 98 | 2 | 26 | 237 | 24 | 222 | 5.03e-62 | 194 |
| Msa1316640 | AT4G17615.2 | 54.777 | 157 | 71 | 0 | 78 | 234 | 12 | 168 | 2.67e-61 | 190 |
| Msa1316640 | AT4G01420.2 | 47.872 | 188 | 98 | 0 | 29 | 216 | 4 | 191 | 1.18e-58 | 184 |
| Msa1316640 | AT4G26560.1 | 46.316 | 190 | 89 | 1 | 59 | 235 | 25 | 214 | 1.53e-56 | 179 |
| Msa1316640 | AT5G47100.2 | 53.623 | 138 | 64 | 0 | 45 | 182 | 21 | 158 | 8.04e-50 | 161 |
| Msa1316640 | AT4G33000.5 | 55.556 | 144 | 64 | 0 | 41 | 184 | 53 | 196 | 2.66e-48 | 158 |
| Msa1316640 | AT4G33000.4 | 56.429 | 140 | 61 | 0 | 41 | 180 | 53 | 192 | 3.38e-48 | 157 |
| Msa1316640 | AT4G33000.6 | 56.429 | 140 | 61 | 0 | 41 | 180 | 53 | 192 | 3.38e-48 | 157 |
| Msa1316640 | AT4G33000.3 | 55.435 | 92 | 41 | 0 | 41 | 132 | 53 | 144 | 1.20e-25 | 98.6 |
Find 68 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACCCTGCAGCAGATTT+TGG | 0.198326 | 8_4:-17549771 | Msa1316640:three_prime_UTR |
| TATCAATGCTTATTAGAAAT+TGG | 0.232954 | 8_4:-17549974 | Msa1316640:three_prime_UTR |
| TTGTCTGCTTGAGGAGCTTT+AGG | 0.234896 | 8_4:+17550917 | None:intergenic |
| GGATATGGTGTTGATGATTT+TGG | 0.239699 | 8_4:-17550563 | Msa1316640:CDS |
| TTCTGCATTCAGCATAAAAC+TGG | 0.279116 | 8_4:+17550094 | None:intergenic |
| TTCTAATAAGCATTGATATA+CGG | 0.295596 | 8_4:+17549979 | None:intergenic |
| ATTTCACGCATTTAGTGATT+TGG | 0.309668 | 8_4:+17549598 | None:intergenic |
| TAGTGAAAATTGTGAATTGC+AGG | 0.313327 | 8_4:+17549826 | None:intergenic |
| TAAATTCGCCAAACTCTATA+TGG | 0.330475 | 8_4:+17550963 | None:intergenic |
| GGCGAATTTATCAGATCTTT+AGG | 0.334304 | 8_4:-17550950 | Msa1316640:CDS |
| ATTTATTGCAAGGTTTCCTT+AGG | 0.350767 | 8_4:-17549862 | Msa1316640:three_prime_UTR |
| ATAACAAAAGCATATTTAGA+AGG | 0.376320 | 8_4:+17549526 | None:intergenic |
| AAATTTACAGTTGAAGGATA+TGG | 0.376424 | 8_4:-17550578 | Msa1316640:intron |
| TTAGAAGGCTTACAAACTTT+CGG | 0.377134 | 8_4:+17549541 | None:intergenic |
| CACAACGGCCATATAGAGTT+TGG | 0.395021 | 8_4:-17550971 | Msa1316640:CDS |
| TATTCATGTAGTTTGTCGTT+TGG | 0.412384 | 8_4:-17549721 | Msa1316640:three_prime_UTR |
| AAACTATGAGTGTGATTCTT+CGG | 0.416254 | 8_4:+17550070 | None:intergenic |
| GTCATGTTCTTGAGTAATGA+TGG | 0.435791 | 8_4:+17550319 | None:intergenic |
| AAACAAACGCAACCTCTTTG+TGG | 0.437485 | 8_4:-17551129 | Msa1316640:CDS |
| AAAAGTAGCAGAAAATGTTA+TGG | 0.443418 | 8_4:-17552272 | Msa1316640:CDS |
| TTATATGACTTGAGGCATAC+AGG | 0.464058 | 8_4:-17550700 | Msa1316640:CDS |
| ATTCTTTATCTGCTGATACA+TGG | 0.467649 | 8_4:+17549380 | None:intergenic |
| ATCAGCAGATAAAGAATTTG+TGG | 0.469529 | 8_4:-17549374 | None:intergenic |
| TTTAAAACTTACATTAGATA+AGG | 0.469690 | 8_4:+17550292 | None:intergenic |
| GTGAATCCAAAATCTGCTGC+AGG | 0.480932 | 8_4:+17549765 | None:intergenic |
| ACAAACTACATGAATATACT+TGG | 0.481436 | 8_4:+17549728 | None:intergenic |
| GAAGAATGGAGTGAATATGT+TGG | 0.482908 | 8_4:-17550349 | Msa1316640:CDS |
| AGTTTGTCGTTTGGAGCCGT+TGG | 0.491537 | 8_4:-17549712 | Msa1316640:three_prime_UTR |
| GATATACGGTTATCAGAGGT+TGG | 0.492182 | 8_4:+17549993 | None:intergenic |
| AAGAGAGGTGGAAATCTTGA+AGG | 0.496509 | 8_4:-17551379 | Msa1316640:CDS |
| AACATGATCTTTCTGTGATG+TGG | 0.500298 | 8_4:-17549477 | Msa1316640:three_prime_UTR |
| TTGAACCACGTCACGGAAAG+AGG | 0.504097 | 8_4:+17549442 | None:intergenic |
| TATCCGAGGTATTTATTGCA+AGG | 0.507312 | 8_4:-17549872 | Msa1316640:three_prime_UTR |
| CAAATGCAATGCATATAGAA+TGG | 0.521321 | 8_4:-17550031 | Msa1316640:three_prime_UTR |
| CTTATCTTTGCCAACTTCAG+AGG | 0.524395 | 8_4:+17552243 | None:intergenic |
| TTTATTGCAAGGTTTCCTTA+GGG | 0.526921 | 8_4:-17549861 | Msa1316640:three_prime_UTR |
| ACGCAACCTCTTTGTGGATA+GGG | 0.528181 | 8_4:-17551123 | Msa1316640:intron |
| TTTCTAGAAACAGACACAAA+AGG | 0.529093 | 8_4:-17550391 | Msa1316640:CDS |
| AAGGGATTATAACACATTTG+AGG | 0.530360 | 8_4:+17549503 | None:intergenic |
| TACATGGTGTTTCAGAAGCA+AGG | 0.531935 | 8_4:+17552158 | None:intergenic |
| GTTTCTGAATTTCTTATCCG+AGG | 0.532157 | 8_4:-17549886 | Msa1316640:three_prime_UTR |
| TGCAATGCATATAGAATGGT+CGG | 0.539006 | 8_4:-17550027 | Msa1316640:three_prime_UTR |
| AAATAGTGAAAATGCATGGA+GGG | 0.546304 | 8_4:-17549801 | Msa1316640:three_prime_UTR |
| GTAGCAGAAAATGTTATGGA+TGG | 0.546978 | 8_4:-17552268 | Msa1316640:CDS |
| TTGGAGCTGTTAGATGAAGA+TGG | 0.547907 | 8_4:+17549617 | None:intergenic |
| CATTTAGATTATATGACTTG+AGG | 0.558619 | 8_4:-17550708 | Msa1316640:CDS |
| TTTGGTTCTATCTGATGATG+TGG | 0.562282 | 8_4:-17550530 | Msa1316640:CDS |
| AACGCAACCTCTTTGTGGAT+AGG | 0.564160 | 8_4:-17551124 | Msa1316640:CDS |
| GACATGAGCTTAATATGTGT+TGG | 0.566725 | 8_4:+17552427 | None:intergenic |
| TAAGAAATAGTGAAAATGCA+TGG | 0.569281 | 8_4:-17549805 | Msa1316640:three_prime_UTR |
| GAAACAGACACAAAAGGTGA+TGG | 0.584833 | 8_4:-17550385 | Msa1316640:CDS |
| ACTGTAATGTCTTGAACCAA+CGG | 0.599224 | 8_4:+17549696 | None:intergenic |
| TGCATACCCTATCCACAAAG+AGG | 0.601114 | 8_4:+17551117 | None:intergenic |
| ATGGATGGATCCTCTGAAGT+TGG | 0.601948 | 8_4:-17552253 | Msa1316640:CDS |
| CCTAGCAGTTACTGTAAGAG+AGG | 0.602167 | 8_4:-17551394 | Msa1316640:intron |
| AAGAAATTCAGAAACAAGAA+CGG | 0.605585 | 8_4:+17549894 | None:intergenic |
| AGCAGTTACTGTAAGAGAGG+TGG | 0.607233 | 8_4:-17551391 | Msa1316640:intron |
| AACTCATTGTGCAATGTAAG+CGG | 0.608467 | 8_4:+17549571 | None:intergenic |
| CATTGATATACGGTTATCAG+AGG | 0.613841 | 8_4:+17549989 | None:intergenic |
| ACAGAAAGATCATGTTAACA+AGG | 0.617259 | 8_4:+17549484 | None:intergenic |
| AAACCTTGCAATAAATACCT+CGG | 0.627375 | 8_4:+17549869 | None:intergenic |
| AATATACTTGGAATGTGAGA+TGG | 0.634541 | 8_4:+17549740 | None:intergenic |
| TGATGTGGTTGAAACAATTG+TGG | 0.635953 | 8_4:-17550515 | Msa1316640:CDS |
| TCTGCATTCAGCATAAAACT+GGG | 0.654617 | 8_4:+17550095 | None:intergenic |
| CAGAAAGATCATGTTAACAA+GGG | 0.656092 | 8_4:+17549485 | None:intergenic |
| TGAATCCAAAATCTGCTGCA+GGG | 0.662444 | 8_4:+17549766 | None:intergenic |
| AGGTTACATTGAGCGCGAAG+AGG | 0.670430 | 8_4:-17550680 | Msa1316640:intron |
| GAAATAGTGAAAATGCATGG+AGG | 0.677831 | 8_4:-17549802 | Msa1316640:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTAAAATAAGTAAAAAAA+GGG | + | chr8_4:17550003-17550022 | None:intergenic | 10.0% |
| !! | TTACTAAAATAAGTAAAAAA+AGG | + | chr8_4:17550004-17550023 | None:intergenic | 10.0% |
| !!! | AGTTTCTTATATATATATTT+TGG | - | chr8_4:17551388-17551407 | Msa1316640:CDS | 10.0% |
| !!! | GTTTCTTATATATATATTTT+GGG | - | chr8_4:17551389-17551408 | Msa1316640:CDS | 10.0% |
| !!! | TTTCTTATATATATATTTTG+GGG | - | chr8_4:17551390-17551409 | Msa1316640:intron | 10.0% |
| !! | CTTATAATCTGTAAAATTAT+AGG | - | chr8_4:17549755-17549774 | Msa1316640:three_prime_UTR | 15.0% |
| !! | ATATATTAAGTGTAAAAAAG+AGG | + | chr8_4:17549852-17549871 | None:intergenic | 15.0% |
| !! | AATTAGTTATTGCTTAAAAA+AGG | - | chr8_4:17549873-17549892 | Msa1316640:three_prime_UTR | 15.0% |
| !! | ATTAGTTATTGCTTAAAAAA+GGG | - | chr8_4:17549874-17549893 | Msa1316640:three_prime_UTR | 15.0% |
| !! | AATTGATATTGTTAAGTATA+TGG | - | chr8_4:17551054-17551073 | Msa1316640:intron | 15.0% |
| !!! | TTCTTATATATATATTTTGG+GGG | - | chr8_4:17551391-17551410 | Msa1316640:intron | 15.0% |
| !!! | TTTAAAACTTACATTAGATA+AGG | + | chr8_4:17551529-17551548 | None:intergenic | 15.0% |
| !!! | ATTTAACTATATTCATTTTG+AGG | + | chr8_4:17551603-17551622 | None:intergenic | 15.0% |
| !!! | AAATTTTCTTCTTTTGTTTT+TGG | - | chr8_4:17551619-17551638 | Msa1316640:intron | 15.0% |
| !!! | TCATTTTCTTTTACTTTTGA+AGG | + | chr8_4:17549607-17549626 | None:intergenic | 20.0% |
| !! | GCAAAAAAAAAAACTTGAAA+AGG | + | chr8_4:17549699-17549718 | None:intergenic | 20.0% |
| !!! | AATATACTACTTTGATTTAG+TGG | - | chr8_4:17549819-17549838 | Msa1316640:three_prime_UTR | 20.0% |
| !! | TTAGTTATTGCTTAAAAAAG+GGG | - | chr8_4:17549875-17549894 | Msa1316640:three_prime_UTR | 20.0% |
| !!! | TGACAATTGTTTTAATGTTT+TGG | - | chr8_4:17551208-17551227 | Msa1316640:intron | 20.0% |
| !! | TAATGAAAATTTACAGTTGA+AGG | - | chr8_4:17551234-17551253 | Msa1316640:intron | 20.0% |
| !!! | TCTTATATATATATTTTGGG+GGG | - | chr8_4:17551392-17551411 | Msa1316640:intron | 20.0% |
| !!! | TTCTAATAAGCATTGATATA+CGG | + | chr8_4:17551842-17551861 | None:intergenic | 20.0% |
| !! | TATCAATGCTTATTAGAAAT+TGG | - | chr8_4:17551844-17551863 | Msa1316640:intron | 20.0% |
| !!! | ATAACAAAAGCATATTTAGA+AGG | + | chr8_4:17552295-17552314 | None:intergenic | 20.0% |
| !! | TCAACAAATTTCTGTCTTTT+TGG | - | chr8_4:17549497-17549516 | Msa1316640:three_prime_UTR | 25.0% |
| !!! | TCTTTTTGGTTGTAAAGAAT+GGG | - | chr8_4:17549511-17549530 | Msa1316640:three_prime_UTR | 25.0% |
| ! | AAAAGTAGCAGAAAATGTTA+TGG | - | chr8_4:17549546-17549565 | Msa1316640:three_prime_UTR | 25.0% |
| !!! | TCAAGTTTTTTTTTTTGCCT+TGG | - | chr8_4:17549701-17549720 | Msa1316640:three_prime_UTR | 25.0% |
| ! | CAAGACAATTTAAATTTCCA+AGG | + | chr8_4:17549721-17549740 | None:intergenic | 25.0% |
| ! | GTGTGATTTAGATAATTTCA+TGG | - | chr8_4:17549783-17549802 | Msa1316640:three_prime_UTR | 25.0% |
| ! | AATAAGTAAAAAAAGGGTCA+CGG | + | chr8_4:17549997-17550016 | None:intergenic | 25.0% |
| ! | TAGCTTATGAAAACAGATTA+TGG | - | chr8_4:17550034-17550053 | Msa1316640:three_prime_UTR | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | + | chr8_4:17550175-17550194 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | + | chr8_4:17550188-17550207 | None:intergenic | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | - | chr8_4:17550187-17550206 | Msa1316640:intron | 25.0% |
| ! | GTACACTATTCATATACAAT+TGG | + | chr8_4:17550379-17550398 | None:intergenic | 25.0% |
| !! | GAAAAATGGACTTATTCAAA+AGG | - | chr8_4:17550493-17550512 | Msa1316640:intron | 25.0% |
| ! | TGTGTATTGTGTATATTAAC+AGG | - | chr8_4:17550635-17550654 | Msa1316640:intron | 25.0% |
| ! | CATTTAGATTATATGACTTG+AGG | - | chr8_4:17551110-17551129 | Msa1316640:intron | 25.0% |
| ! | TCTATCATATGAAAAGACTA+CGG | + | chr8_4:17551173-17551192 | None:intergenic | 25.0% |
| !! | AGTCTTTTCATATGATAGAT+TGG | - | chr8_4:17551174-17551193 | Msa1316640:intron | 25.0% |
| ! | AAATTTACAGTTGAAGGATA+TGG | - | chr8_4:17551240-17551259 | Msa1316640:intron | 25.0% |
| !! | GAAAAATTGACTTAGAAGAA+TGG | - | chr8_4:17551455-17551474 | Msa1316640:intron | 25.0% |
| ! | AAACATCATAATGCAATGAA+TGG | + | chr8_4:17551570-17551589 | None:intergenic | 25.0% |
| !!! | ACCTTTTGATTCTAATTTCA+GGG | - | chr8_4:17551683-17551702 | Msa1316640:intron | 25.0% |
| ! | AAGAAATTCAGAAACAAGAA+CGG | + | chr8_4:17551927-17551946 | None:intergenic | 25.0% |
| ! | TAAGAAATAGTGAAAATGCA+TGG | - | chr8_4:17552013-17552032 | Msa1316640:intron | 25.0% |
| ! | ACAAACTACATGAATATACT+TGG | + | chr8_4:17552093-17552112 | None:intergenic | 25.0% |
| !!! | GTCTTTTTGGTTGTAAAGAA+TGG | - | chr8_4:17549510-17549529 | Msa1316640:three_prime_UTR | 30.0% |
| AGCAAGGATAGAAAAATCTT+CGG | + | chr8_4:17549647-17549666 | None:intergenic | 30.0% | |
| !!! | AACCACTTTTTGACAACTTT+TGG | - | chr8_4:17550090-17550109 | Msa1316640:CDS | 30.0% |
| TCAACAAAGTTGTCATCAAA+TGG | - | chr8_4:17550213-17550232 | Msa1316640:intron | 30.0% | |
| CAAAAATGAAAACACACAAG+TGG | + | chr8_4:17550353-17550372 | None:intergenic | 30.0% | |
| AGCACAGTTATTGTGAAAAA+TGG | - | chr8_4:17550479-17550498 | Msa1316640:intron | 30.0% | |
| ACTTGAATCTCTTGTTCAAT+TGG | - | chr8_4:17550552-17550571 | Msa1316640:CDS | 30.0% | |
| TAAATTCGCCAAACTCTATA+TGG | + | chr8_4:17550858-17550877 | None:intergenic | 30.0% | |
| !!! | CATTTTATTTTGTCTGCTTG+AGG | + | chr8_4:17550913-17550932 | None:intergenic | 30.0% |
| ! | CTGCGAAGAATAATTTTACA+TGG | + | chr8_4:17551087-17551106 | None:intergenic | 30.0% |
| CTATCATATGAAAAGACTAC+GGG | + | chr8_4:17551172-17551191 | None:intergenic | 30.0% | |
| !!! | GATTTTGGTTGAATCTGATT+TGG | - | chr8_4:17551270-17551289 | Msa1316640:intron | 30.0% |
| ! | TTTCTAGAAACAGACACAAA+AGG | - | chr8_4:17551427-17551446 | Msa1316640:intron | 30.0% |
| !! | CACCTTTTGATTCTAATTTC+AGG | - | chr8_4:17551682-17551701 | Msa1316640:intron | 30.0% |
| TCCCTGAAATTAGAATCAAA+AGG | + | chr8_4:17551687-17551706 | None:intergenic | 30.0% | |
| AAACTATGAGTGTGATTCTT+CGG | + | chr8_4:17551751-17551770 | None:intergenic | 30.0% | |
| CAAATGCAATGCATATAGAA+TGG | - | chr8_4:17551787-17551806 | Msa1316640:intron | 30.0% | |
| !! | AGACCATAGTACACTTTTTA+TGG | - | chr8_4:17551891-17551910 | Msa1316640:intron | 30.0% |
| !! | GACCATAGTACACTTTTTAT+GGG | - | chr8_4:17551892-17551911 | Msa1316640:intron | 30.0% |
| !! | ACCATAGTACACTTTTTATG+GGG | - | chr8_4:17551893-17551912 | Msa1316640:intron | 30.0% |
| AAACCTTGCAATAAATACCT+CGG | + | chr8_4:17551952-17551971 | None:intergenic | 30.0% | |
| ATTTATTGCAAGGTTTCCTT+AGG | - | chr8_4:17551956-17551975 | Msa1316640:intron | 30.0% | |
| TTTATTGCAAGGTTTCCTTA+GGG | - | chr8_4:17551957-17551976 | Msa1316640:intron | 30.0% | |
| TAGTGAAAATTGTGAATTGC+AGG | + | chr8_4:17551995-17552014 | None:intergenic | 30.0% | |
| AAATAGTGAAAATGCATGGA+GGG | - | chr8_4:17552017-17552036 | Msa1316640:intron | 30.0% | |
| AATATACTTGGAATGTGAGA+TGG | + | chr8_4:17552081-17552100 | None:intergenic | 30.0% | |
| ! | TATTCATGTAGTTTGTCGTT+TGG | - | chr8_4:17552097-17552116 | Msa1316640:intron | 30.0% |
| ATTTCACGCATTTAGTGATT+TGG | + | chr8_4:17552223-17552242 | None:intergenic | 30.0% | |
| TTAGAAGGCTTACAAACTTT+CGG | + | chr8_4:17552280-17552299 | None:intergenic | 30.0% | |
| AAGGGATTATAACACATTTG+AGG | + | chr8_4:17552318-17552337 | None:intergenic | 30.0% | |
| CAGAAAGATCATGTTAACAA+GGG | + | chr8_4:17552336-17552355 | None:intergenic | 30.0% | |
| ACAGAAAGATCATGTTAACA+AGG | + | chr8_4:17552337-17552356 | None:intergenic | 30.0% | |
| ATTCTTTATCTGCTGATACA+TGG | + | chr8_4:17552441-17552460 | None:intergenic | 30.0% | |
| GACATGAGCTTAATATGTGT+TGG | + | chr8_4:17549394-17549413 | None:intergenic | 35.0% | |
| GTAGCAGAAAATGTTATGGA+TGG | - | chr8_4:17549550-17549569 | Msa1316640:three_prime_UTR | 35.0% | |
| AGGAAGCTTTCTTACTTACA+TGG | + | chr8_4:17549679-17549698 | None:intergenic | 35.0% | |
| CATAGTGCATACCATCTTAA+GGG | - | chr8_4:17549903-17549922 | Msa1316640:three_prime_UTR | 35.0% | |
| ! | ATACCATCTTAAGGGCTTTT+TGG | - | chr8_4:17549911-17549930 | Msa1316640:three_prime_UTR | 35.0% |
| AATCCAAAAAGCCCTTAAGA+TGG | + | chr8_4:17549917-17549936 | None:intergenic | 35.0% | |
| GTCCAAAAGTTGTCAAAAAG+TGG | + | chr8_4:17550095-17550114 | None:intergenic | 35.0% | |
| AAAACAATGGAGAGGGAAAA+AGG | + | chr8_4:17550162-17550181 | None:intergenic | 35.0% | |
| TTGGTCAAAAACAATGGAGA+GGG | + | chr8_4:17550169-17550188 | None:intergenic | 35.0% | |
| ATTGGTCAAAAACAATGGAG+AGG | + | chr8_4:17550170-17550189 | None:intergenic | 35.0% | |
| TCACTTCTGCTACAATCAAT+TGG | - | chr8_4:17550320-17550339 | Msa1316640:CDS | 35.0% | |
| ATGAAAACACACAAGTGGAA+AGG | + | chr8_4:17550348-17550367 | None:intergenic | 35.0% | |
| ! | AGCTTCACTTTGCTCTTTTT+AGG | - | chr8_4:17550661-17550680 | Msa1316640:intron | 35.0% |
| GAAAAGATCAAACATCTGCA+TGG | + | chr8_4:17550818-17550837 | None:intergenic | 35.0% | |
| ! | CTTTTCGATGTCAATCACAA+CGG | - | chr8_4:17550832-17550851 | Msa1316640:intron | 35.0% |
| GGCGAATTTATCAGATCTTT+AGG | - | chr8_4:17550868-17550887 | Msa1316640:intron | 35.0% | |
| TGTATATACGATCAACATCC+TGG | + | chr8_4:17550987-17551006 | None:intergenic | 35.0% | |
| TTATATGACTTGAGGCATAC+AGG | - | chr8_4:17551118-17551137 | Msa1316640:intron | 35.0% | |
| !!! | GGATATGGTGTTGATGATTT+TGG | - | chr8_4:17551255-17551274 | Msa1316640:intron | 35.0% |
| !! | TTTGGTTCTATCTGATGATG+TGG | - | chr8_4:17551288-17551307 | Msa1316640:intron | 35.0% |
| TGATGTGGTTGAAACAATTG+TGG | - | chr8_4:17551303-17551322 | Msa1316640:intron | 35.0% | |
| GAAGAATGGAGTGAATATGT+TGG | - | chr8_4:17551469-17551488 | Msa1316640:intron | 35.0% | |
| GTCATGTTCTTGAGTAATGA+TGG | + | chr8_4:17551502-17551521 | None:intergenic | 35.0% | |
| TTAGAAAAAACTGCGTCACT+TGG | + | chr8_4:17551660-17551679 | None:intergenic | 35.0% | |
| TCTGCATTCAGCATAAAACT+GGG | + | chr8_4:17551726-17551745 | None:intergenic | 35.0% | |
| TTCTGCATTCAGCATAAAAC+TGG | + | chr8_4:17551727-17551746 | None:intergenic | 35.0% | |
| TGCAATGCATATAGAATGGT+CGG | - | chr8_4:17551791-17551810 | Msa1316640:intron | 35.0% | |
| CATTGATATACGGTTATCAG+AGG | + | chr8_4:17551832-17551851 | None:intergenic | 35.0% | |
| ! | TCCCCATAAAAAGTGTACTA+TGG | + | chr8_4:17551897-17551916 | None:intergenic | 35.0% |
| !! | ACACTTTTTATGGGGAAGTT+TGG | - | chr8_4:17551901-17551920 | Msa1316640:intron | 35.0% |
| GTTTCTGAATTTCTTATCCG+AGG | - | chr8_4:17551932-17551951 | Msa1316640:intron | 35.0% | |
| ! | TATCCGAGGTATTTATTGCA+AGG | - | chr8_4:17551946-17551965 | Msa1316640:intron | 35.0% |
| GAAATAGTGAAAATGCATGG+AGG | - | chr8_4:17552016-17552035 | Msa1316640:intron | 35.0% | |
| ACTGTAATGTCTTGAACCAA+CGG | + | chr8_4:17552125-17552144 | None:intergenic | 35.0% | |
| AACTCATTGTGCAATGTAAG+CGG | + | chr8_4:17552250-17552269 | None:intergenic | 35.0% | |
| AACATGATCTTTCTGTGATG+TGG | - | chr8_4:17552341-17552360 | Msa1316640:five_prime_UTR | 35.0% | |
| CTTATCTTTGCCAACTTCAG+AGG | + | chr8_4:17549578-17549597 | None:intergenic | 40.0% | |
| TACATGGTGTTTCAGAAGCA+AGG | + | chr8_4:17549663-17549682 | None:intergenic | 40.0% | |
| GCATAGTGCATACCATCTTA+AGG | - | chr8_4:17549902-17549921 | Msa1316640:three_prime_UTR | 40.0% | |
| AAGAGAGGTGGAAATCTTGA+AGG | - | chr8_4:17550439-17550458 | Msa1316640:intron | 40.0% | |
| AAACAAACGCAACCTCTTTG+TGG | - | chr8_4:17550689-17550708 | Msa1316640:CDS | 40.0% | |
| AGTCGTTTGTTTACCATTCC+AGG | - | chr8_4:17550966-17550985 | Msa1316640:CDS | 40.0% | |
| ATACGATCAACATCCTGGAA+TGG | + | chr8_4:17550982-17551001 | None:intergenic | 40.0% | |
| GAAACAGACACAAAAGGTGA+TGG | - | chr8_4:17551433-17551452 | Msa1316640:intron | 40.0% | |
| GATATACGGTTATCAGAGGT+TGG | + | chr8_4:17551828-17551847 | None:intergenic | 40.0% | |
| TGAATCCAAAATCTGCTGCA+GGG | + | chr8_4:17552055-17552074 | None:intergenic | 40.0% | |
| TTGGAGCTGTTAGATGAAGA+TGG | + | chr8_4:17552204-17552223 | None:intergenic | 40.0% | |
| TAAGTACTTGAACCACGTCA+CGG | + | chr8_4:17552386-17552405 | None:intergenic | 40.0% | |
| TGGTTCAAGTACTTAGGTGA+AGG | - | chr8_4:17552391-17552410 | Msa1316640:five_prime_UTR | 40.0% | |
| !! | ATGGATGGATCCTCTGAAGT+TGG | - | chr8_4:17549565-17549584 | Msa1316640:three_prime_UTR | 45.0% |
| AGAGGGAAAAAGGAAGAGAG+AGG | + | chr8_4:17550152-17550171 | None:intergenic | 45.0% | |
| CCTCTCTTACAGTAACTGCT+AGG | + | chr8_4:17550427-17550446 | None:intergenic | 45.0% | |
| CCTAGCAGTTACTGTAAGAG+AGG | - | chr8_4:17550424-17550443 | Msa1316640:intron | 45.0% | |
| AGCAGTTACTGTAAGAGAGG+TGG | - | chr8_4:17550427-17550446 | Msa1316640:intron | 45.0% | |
| AACGCAACCTCTTTGTGGAT+AGG | - | chr8_4:17550694-17550713 | Msa1316640:CDS | 45.0% | |
| ACGCAACCTCTTTGTGGATA+GGG | - | chr8_4:17550695-17550714 | Msa1316640:CDS | 45.0% | |
| TGCATACCCTATCCACAAAG+AGG | + | chr8_4:17550704-17550723 | None:intergenic | 45.0% | |
| CACAACGGCCATATAGAGTT+TGG | - | chr8_4:17550847-17550866 | Msa1316640:intron | 45.0% | |
| TTGTCTGCTTGAGGAGCTTT+AGG | + | chr8_4:17550904-17550923 | None:intergenic | 45.0% | |
| !!! | AGGCTTTTCAAGTTGCCCTA+AGG | + | chr8_4:17551975-17551994 | None:intergenic | 45.0% |
| ! | TTTGACCCTGCAGCAGATTT+TGG | - | chr8_4:17552047-17552066 | Msa1316640:intron | 45.0% |
| GTGAATCCAAAATCTGCTGC+AGG | + | chr8_4:17552056-17552075 | None:intergenic | 45.0% | |
| GTGACGTGGTTCAAGTACTT+AGG | - | chr8_4:17552385-17552404 | Msa1316640:five_prime_UTR | 45.0% | |
| AGGTTACATTGAGCGCGAAG+AGG | - | chr8_4:17551138-17551157 | Msa1316640:CDS | 50.0% | |
| ! | AGTTTGTCGTTTGGAGCCGT+TGG | - | chr8_4:17552106-17552125 | Msa1316640:intron | 50.0% |
| ACTTACCTCTTTCCGTGACG+TGG | - | chr8_4:17552371-17552390 | Msa1316640:five_prime_UTR | 50.0% | |
| TTGAACCACGTCACGGAAAG+AGG | + | chr8_4:17552379-17552398 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 17549377 | 17552463 | 17549377 | ID=Msa1316640;Name=Msa1316640 |
| chr8_4 | mRNA | 17549377 | 17552463 | 17549377 | ID=Msa1316640-mRNA-1;Parent=Msa1316640;Name=Msa1316640-mRNA-1;_AED=0.11;_eAED=0.11;_QI=152|1|1|1|0.77|0.7|10|646|237 |
| chr8_4 | exon | 17549377 | 17549433 | 17549377 | ID=Msa1316640-mRNA-1:exon:6370;Parent=Msa1316640-mRNA-1 |
| chr8_4 | exon | 17549456 | 17549666 | 17549456 | ID=Msa1316640-mRNA-1:exon:6369;Parent=Msa1316640-mRNA-1 |
| chr8_4 | exon | 17549695 | 17550136 | 17549695 | ID=Msa1316640-mRNA-1:exon:6368;Parent=Msa1316640-mRNA-1 |
| chr8_4 | exon | 17550304 | 17550416 | 17550304 | ID=Msa1316640-mRNA-1:exon:6367;Parent=Msa1316640-mRNA-1 |
| chr8_4 | exon | 17550510 | 17550590 | 17550510 | ID=Msa1316640-mRNA-1:exon:6366;Parent=Msa1316640-mRNA-1 |
| chr8_4 | exon | 17550681 | 17550733 | 17550681 | ID=Msa1316640-mRNA-1:exon:6365;Parent=Msa1316640-mRNA-1 |
| chr8_4 | exon | 17550909 | 17551017 | 17550909 | ID=Msa1316640-mRNA-1:exon:6364;Parent=Msa1316640-mRNA-1 |
| chr8_4 | exon | 17551124 | 17551183 | 17551124 | ID=Msa1316640-mRNA-1:exon:6363;Parent=Msa1316640-mRNA-1 |
| chr8_4 | exon | 17551326 | 17551408 | 17551326 | ID=Msa1316640-mRNA-1:exon:6362;Parent=Msa1316640-mRNA-1 |
| chr8_4 | exon | 17552161 | 17552463 | 17552161 | ID=Msa1316640-mRNA-1:exon:6361;Parent=Msa1316640-mRNA-1 |
| chr8_4 | five_prime_UTR | 17552312 | 17552463 | 17552312 | ID=Msa1316640-mRNA-1:five_prime_utr;Parent=Msa1316640-mRNA-1 |
| chr8_4 | CDS | 17552161 | 17552311 | 17552161 | ID=Msa1316640-mRNA-1:cds;Parent=Msa1316640-mRNA-1 |
| chr8_4 | CDS | 17551326 | 17551408 | 17551326 | ID=Msa1316640-mRNA-1:cds;Parent=Msa1316640-mRNA-1 |
| chr8_4 | CDS | 17551124 | 17551183 | 17551124 | ID=Msa1316640-mRNA-1:cds;Parent=Msa1316640-mRNA-1 |
| chr8_4 | CDS | 17550909 | 17551017 | 17550909 | ID=Msa1316640-mRNA-1:cds;Parent=Msa1316640-mRNA-1 |
| chr8_4 | CDS | 17550681 | 17550733 | 17550681 | ID=Msa1316640-mRNA-1:cds;Parent=Msa1316640-mRNA-1 |
| chr8_4 | CDS | 17550510 | 17550590 | 17550510 | ID=Msa1316640-mRNA-1:cds;Parent=Msa1316640-mRNA-1 |
| chr8_4 | CDS | 17550304 | 17550416 | 17550304 | ID=Msa1316640-mRNA-1:cds;Parent=Msa1316640-mRNA-1 |
| chr8_4 | CDS | 17550073 | 17550136 | 17550073 | ID=Msa1316640-mRNA-1:cds;Parent=Msa1316640-mRNA-1 |
| chr8_4 | three_prime_UTR | 17549695 | 17550072 | 17549695 | ID=Msa1316640-mRNA-1:three_prime_utr;Parent=Msa1316640-mRNA-1 |
| chr8_4 | three_prime_UTR | 17549456 | 17549666 | 17549456 | ID=Msa1316640-mRNA-1:three_prime_utr;Parent=Msa1316640-mRNA-1 |
| chr8_4 | three_prime_UTR | 17549377 | 17549433 | 17549377 | ID=Msa1316640-mRNA-1:three_prime_utr;Parent=Msa1316640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
