Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1262190 | XP_004508519.1 | 88.095 | 168 | 19 | 1 | 1 | 167 | 1 | 168 | 1.13e-106 | 312 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1262190 | sp|Q9XI31|GLYI4_ARATH | 62.275 | 167 | 60 | 2 | 2 | 165 | 6 | 172 | 2.51e-72 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000800 | Msa1262190 | 0.811201 | 7.879630e-51 | -8.615850e-47 |
| Msa0042520 | Msa1262190 | -0.800690 | 1.280714e-48 | -8.615850e-47 |
| Msa0075990 | Msa1262190 | -0.805314 | 1.417424e-49 | -8.615850e-47 |
| Msa0079100 | Msa1262190 | -0.805017 | 1.635416e-49 | -8.615850e-47 |
| Msa0097470 | Msa1262190 | -0.801631 | 8.218431e-49 | -8.615850e-47 |
| Msa0115740 | Msa1262190 | 0.803056 | 4.181244e-49 | -8.615850e-47 |
| Msa0612580 | Msa1262190 | 0.808049 | 3.747695e-50 | -8.615850e-47 |
| Msa0619450 | Msa1262190 | -0.816342 | 5.809446e-52 | -8.615850e-47 |
| Msa0625900 | Msa1262190 | -0.808528 | 2.963032e-50 | -8.615850e-47 |
| Msa0628440 | Msa1262190 | -0.805804 | 1.118698e-49 | -8.615850e-47 |
| Msa0636740 | Msa1262190 | 0.809583 | 1.760985e-50 | -8.615850e-47 |
| Msa0636770 | Msa1262190 | 0.815396 | 9.446731e-52 | -8.615850e-47 |
| Msa0645450 | Msa1262190 | 0.812066 | 5.109739e-51 | -8.615850e-47 |
| Msa0659580 | Msa1262190 | -0.816446 | 5.507201e-52 | -8.615850e-47 |
| Msa0663690 | Msa1262190 | -0.804364 | 2.238663e-49 | -8.615850e-47 |
| Msa0684940 | Msa1262190 | 0.801107 | 1.052535e-48 | -8.615850e-47 |
| Msa0693050 | Msa1262190 | -0.813331 | 2.701357e-51 | -8.615850e-47 |
| Msa0699800 | Msa1262190 | 0.822504 | 2.287208e-53 | -8.615850e-47 |
| Msa0704790 | Msa1262190 | -0.805722 | 1.163717e-49 | -8.615850e-47 |
| Msa0707860 | Msa1262190 | -0.803809 | 2.920003e-49 | -8.615850e-47 |
| Msa0724120 | Msa1262190 | -0.801071 | 1.070518e-48 | -8.615850e-47 |
| Msa0730250 | Msa1262190 | -0.801380 | 9.251488e-49 | -8.615850e-47 |
| Msa0741170 | Msa1262190 | 0.814233 | 1.710046e-51 | -8.615850e-47 |
| Msa0743370 | Msa1262190 | 0.805433 | 1.338179e-49 | -8.615850e-47 |
| Msa0793270 | Msa1262190 | 0.816885 | 4.389759e-52 | -8.615850e-47 |
| Msa0795320 | Msa1262190 | 0.812752 | 3.619012e-51 | -8.615850e-47 |
| Msa0829250 | Msa1262190 | -0.806809 | 6.867194e-50 | -8.615850e-47 |
| Msa0127350 | Msa1262190 | -0.810659 | 1.032727e-50 | -8.615850e-47 |
| Msa0134270 | Msa1262190 | 0.805118 | 1.557606e-49 | -8.615850e-47 |
| Msa0138340 | Msa1262190 | -0.807875 | 4.082438e-50 | -8.615850e-47 |
| Msa0147960 | Msa1262190 | -0.811764 | 5.945485e-51 | -8.615850e-47 |
| Msa0159240 | Msa1262190 | -0.804708 | 1.897077e-49 | -8.615850e-47 |
| Msa0164310 | Msa1262190 | -0.800346 | 1.504815e-48 | -8.615850e-47 |
| Msa0165820 | Msa1262190 | -0.815911 | 7.253762e-52 | -8.615850e-47 |
| Msa0175240 | Msa1262190 | -0.807759 | 4.319586e-50 | -8.615850e-47 |
| Msa0186400 | Msa1262190 | -0.816588 | 5.117869e-52 | -8.615850e-47 |
| Msa0195810 | Msa1262190 | -0.806649 | 7.425549e-50 | -8.615850e-47 |
| Msa0196280 | Msa1262190 | 0.819315 | 1.239156e-52 | -8.615850e-47 |
| Msa0224210 | Msa1262190 | 0.805350 | 1.392730e-49 | -8.615850e-47 |
| Msa0236690 | Msa1262190 | -0.805127 | 1.550886e-49 | -8.615850e-47 |
| Msa1228600 | Msa1262190 | -0.801701 | 7.951167e-49 | -8.615850e-47 |
| Msa1239190 | Msa1262190 | 0.800925 | 1.146511e-48 | -8.615850e-47 |
| Msa1262190 | Msa1296810 | -0.803443 | 3.477063e-49 | -8.615850e-47 |
| Msa1262190 | Msa1297490 | -0.806431 | 8.254171e-50 | -8.615850e-47 |
| Msa1262190 | Msa1297550 | -0.810391 | 1.180159e-50 | -8.615850e-47 |
| Msa1262190 | Msa1317740 | 0.815753 | 7.866832e-52 | -8.615850e-47 |
| Msa1262190 | Msa1342460 | -0.809346 | 1.979679e-50 | -8.615850e-47 |
| Msa1262190 | Msa1344930 | 0.801038 | 1.087306e-48 | -8.615850e-47 |
| Msa1262190 | Msa1348180 | -0.806489 | 8.023660e-50 | -8.615850e-47 |
| Msa1262190 | Msa1356100 | -0.802655 | 5.060122e-49 | -8.615850e-47 |
| Msa1262190 | Msa1361580 | -0.801188 | 1.012955e-48 | -8.615850e-47 |
| Msa1262190 | Msa1371540 | -0.810244 | 1.269226e-50 | -8.615850e-47 |
| Msa1262190 | Msa1381300 | -0.818445 | 1.953375e-52 | -8.615850e-47 |
| Msa1262190 | Msa1382100 | -0.807676 | 4.498483e-50 | -8.615850e-47 |
| Msa1262190 | Msa1395380 | -0.806702 | 7.236140e-50 | -8.615850e-47 |
| Msa1262190 | Msa1398120 | 0.806357 | 8.556293e-50 | -8.615850e-47 |
| Msa1262190 | Msa1398150 | -0.805942 | 1.046133e-49 | -8.615850e-47 |
| Msa1262190 | Msa1400830 | -0.805828 | 1.105449e-49 | -8.615850e-47 |
| Msa1262190 | Msa1403820 | -0.806748 | 7.073770e-50 | -8.615850e-47 |
| Msa1262190 | Msa1408230 | -0.801473 | 8.858359e-49 | -8.615850e-47 |
| Msa1262190 | Msa1410530 | 0.816272 | 6.024455e-52 | -8.615850e-47 |
| Msa1262190 | Msa1411930 | -0.803894 | 2.802934e-49 | -8.615850e-47 |
| Msa1262190 | Msa1451200 | -0.810625 | 1.050195e-50 | -8.615850e-47 |
| Msa1262190 | Msa1452800 | -0.804331 | 2.274098e-49 | -8.615850e-47 |
| Msa1262190 | Msa1454300 | -0.806167 | 9.383942e-50 | -8.615850e-47 |
| Msa0368620 | Msa1262190 | 0.815697 | 8.095804e-52 | -8.615850e-47 |
| Msa0384140 | Msa1262190 | -0.800267 | 1.561811e-48 | -8.615850e-47 |
| Msa0385850 | Msa1262190 | -0.814158 | 1.776156e-51 | -8.615850e-47 |
| Msa0389710 | Msa1262190 | 0.815119 | 1.088405e-51 | -8.615850e-47 |
| Msa0390790 | Msa1262190 | 0.805268 | 1.448719e-49 | -8.615850e-47 |
| Msa0433890 | Msa1262190 | -0.804852 | 1.770262e-49 | -8.615850e-47 |
| Msa0437820 | Msa1262190 | -0.801357 | 9.356258e-49 | -8.615850e-47 |
| Msa0444770 | Msa1262190 | -0.810494 | 1.120865e-50 | -8.615850e-47 |
| Msa0474290 | Msa1262190 | -0.806542 | 7.822484e-50 | -8.615850e-47 |
| Msa0480260 | Msa1262190 | 0.817165 | 3.797983e-52 | -8.615850e-47 |
| Msa0995130 | Msa1262190 | -0.801033 | 1.089691e-48 | -8.615850e-47 |
| Msa1039150 | Msa1262190 | -0.816302 | 5.930923e-52 | -8.615850e-47 |
| Msa1066790 | Msa1262190 | -0.807679 | 4.492818e-50 | -8.615850e-47 |
| Msa1078210 | Msa1262190 | -0.802360 | 5.822061e-49 | -8.615850e-47 |
| Msa1083660 | Msa1262190 | -0.810471 | 1.133944e-50 | -8.615850e-47 |
| Msa0246140 | Msa1262190 | 0.807859 | 4.113480e-50 | -8.615850e-47 |
| Msa0269660 | Msa1262190 | -0.807836 | 4.160902e-50 | -8.615850e-47 |
| Msa0269710 | Msa1262190 | 0.812625 | 3.859489e-51 | -8.615850e-47 |
| Msa0315720 | Msa1262190 | -0.805610 | 1.228187e-49 | -8.615850e-47 |
| Msa1112210 | Msa1262190 | -0.806891 | 6.599948e-50 | -8.615850e-47 |
| Msa1121720 | Msa1262190 | -0.802435 | 5.618112e-49 | -8.615850e-47 |
| Msa1136770 | Msa1262190 | -0.806377 | 8.472786e-50 | -8.615850e-47 |
| Msa1163130 | Msa1262190 | -0.801582 | 8.411807e-49 | -8.615850e-47 |
| Msa1169600 | Msa1262190 | -0.801265 | 9.771069e-49 | -8.615850e-47 |
| Msa1177650 | Msa1262190 | 0.800590 | 1.341767e-48 | -8.615850e-47 |
| Msa1220850 | Msa1262190 | 0.868652 | 5.566619e-66 | -8.615850e-47 |
| Msa1221270 | Msa1262190 | 0.827937 | 1.187295e-54 | -8.615850e-47 |
| Msa0508160 | Msa1262190 | 0.817146 | 3.836497e-52 | -8.615850e-47 |
| Msa0518720 | Msa1262190 | -0.801770 | 7.696553e-49 | -8.615850e-47 |
| Msa0527210 | Msa1262190 | -0.810375 | 1.189316e-50 | -8.615850e-47 |
| Msa0557440 | Msa1262190 | -0.801563 | 8.489371e-49 | -8.615850e-47 |
| Msa0567190 | Msa1262190 | -0.801878 | 7.313363e-49 | -8.615850e-47 |
| Msa0576480 | Msa1262190 | -0.802058 | 6.717718e-49 | -8.615850e-47 |
| Msa0580890 | Msa1262190 | -0.800890 | 1.165673e-48 | -8.615850e-47 |
| Msa0581350 | Msa1262190 | 0.828767 | 7.484355e-55 | -8.615850e-47 |
| Msa0585720 | Msa1262190 | -0.801222 | 9.970002e-49 | -8.615850e-47 |
| Msa0855260 | Msa1262190 | 0.809848 | 1.545056e-50 | -8.615850e-47 |
| Msa0860630 | Msa1262190 | -0.807987 | 3.864568e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1262190 | MtrunA17_Chr4g0063501 | 95.238 | 168 | 7 | 1 | 1 | 167 | 1 | 168 | 5.40e-110 | 310 |
| Msa1262190 | MtrunA17_Chr4g0003581 | 67.532 | 154 | 50 | 0 | 1 | 154 | 5 | 158 | 3.51e-79 | 232 |
| Msa1262190 | MtrunA17_Chr2g0332851 | 60.479 | 167 | 63 | 2 | 1 | 166 | 5 | 169 | 1.68e-69 | 207 |
| Msa1262190 | MtrunA17_Chr2g0332841 | 58.434 | 166 | 66 | 2 | 1 | 165 | 5 | 168 | 2.35e-66 | 200 |
| Msa1262190 | MtrunA17_Chr2g0277151 | 60.584 | 137 | 54 | 0 | 4 | 140 | 2 | 138 | 1.98e-57 | 177 |
| Msa1262190 | MtrunA17_Chr5g0405171 | 54.795 | 146 | 62 | 1 | 2 | 143 | 22 | 167 | 9.21e-56 | 174 |
| Msa1262190 | MtrunA17_Chr8g0372141 | 54.422 | 147 | 59 | 2 | 3 | 143 | 11 | 155 | 3.39e-54 | 170 |
| Msa1262190 | MtrunA17_Chr1g0212241 | 54.795 | 146 | 63 | 2 | 20 | 164 | 1 | 144 | 6.74e-52 | 162 |
| Msa1262190 | MtrunA17_Chr4g0020201 | 52.206 | 136 | 61 | 2 | 7 | 138 | 36 | 171 | 1.61e-49 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1262190 | AT1G80160.1 | 65.839 | 161 | 55 | 0 | 2 | 162 | 6 | 166 | 9.51e-78 | 229 |
| Msa1262190 | AT1G80160.3 | 65.839 | 161 | 55 | 0 | 2 | 162 | 47 | 207 | 3.16e-77 | 229 |
| Msa1262190 | AT1G15380.2 | 62.275 | 167 | 60 | 2 | 2 | 165 | 6 | 172 | 2.55e-73 | 218 |
| Msa1262190 | AT1G15380.1 | 62.275 | 167 | 60 | 2 | 2 | 165 | 6 | 172 | 2.55e-73 | 218 |
| Msa1262190 | AT2G28420.1 | 50.714 | 140 | 67 | 2 | 1 | 138 | 12 | 151 | 8.37e-52 | 164 |
| Msa1262190 | AT1G80160.2 | 65.789 | 114 | 39 | 0 | 49 | 162 | 27 | 140 | 2.66e-50 | 158 |
Find 29 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTCTTGGTCATACTTTC+TGG | 0.185353 | 8_2:+64809052 | None:intergenic |
| TTGATTAGGTTGTTTAATTA+TGG | 0.210559 | 8_2:-64809106 | Msa1262190:intron |
| TTGGCTTCTTTCCTGTTAAA+AGG | 0.248281 | 8_2:-64809309 | Msa1262190:CDS |
| TGGATTAATGTGCACATTCT+TGG | 0.286505 | 8_2:+64809039 | None:intergenic |
| AAGAACAGAGTAGAGGAAAA+TGG | 0.294782 | 8_2:-64808840 | Msa1262190:CDS |
| CATTCTTGGTCATACTTTCT+GGG | 0.322846 | 8_2:+64809053 | None:intergenic |
| ATCATTGAATCACATTTCAT+TGG | 0.362713 | 8_2:-64809377 | Msa1262190:CDS |
| TACTTTCTGGGTCATCTGAT+TGG | 0.372059 | 8_2:+64809065 | None:intergenic |
| TTCTCTGATAGAGGTACAAC+TGG | 0.404856 | 8_2:+64808744 | None:intergenic |
| AAAGAAATGTGGTTGTCCTT+TGG | 0.424055 | 8_2:+64809019 | None:intergenic |
| ACAATTGCAGATTTCAATCA+TGG | 0.433463 | 8_2:+64808776 | None:intergenic |
| ATTTCAATCATGGTGCCATC+TGG | 0.434106 | 8_2:+64808786 | None:intergenic |
| CTCTATCAGAGAACACAATT+TGG | 0.449396 | 8_2:-64808734 | Msa1262190:CDS |
| TACGTACCATGCACCATTGA+AGG | 0.464268 | 8_2:+64809273 | None:intergenic |
| CAAATTGTGTTCTCTGATAG+AGG | 0.467908 | 8_2:+64808735 | None:intergenic |
| CTGGGTCATCTGATTGGAGA+AGG | 0.480699 | 8_2:+64809071 | None:intergenic |
| TTGTTGCTAGTGTGAAAGTA+TGG | 0.480825 | 8_2:-64808907 | Msa1262190:intron |
| CCTACCTCCTTAGCCTTCAA+TGG | 0.490822 | 8_2:-64809286 | Msa1262190:CDS |
| TCATGGTGCCATCTGGATCA+TGG | 0.496370 | 8_2:+64808793 | None:intergenic |
| AGGTTGTTTAATTATGGCAT+TGG | 0.497038 | 8_2:-64809100 | Msa1262190:CDS |
| CCATGCACCATTGAAGGCTA+AGG | 0.575830 | 8_2:+64809279 | None:intergenic |
| GTATGTGAAGAACAGAGTAG+AGG | 0.586484 | 8_2:-64808847 | Msa1262190:CDS |
| CCATTGAAGGCTAAGGAGGT+AGG | 0.594731 | 8_2:+64809286 | None:intergenic |
| TTGTTCTTCCATGATCCAGA+TGG | 0.596741 | 8_2:-64808801 | Msa1262190:CDS |
| GTGTGAAAGTATGGTAGCAG+TGG | 0.597656 | 8_2:-64808898 | Msa1262190:CDS |
| GATATACTTGGAAAGAAATG+TGG | 0.600017 | 8_2:+64809008 | None:intergenic |
| CCTTAGCCTTCAATGGTGCA+TGG | 0.610902 | 8_2:-64809279 | Msa1262190:intron |
| GAATGTGCACATTAATCCAA+AGG | 0.612046 | 8_2:-64809035 | Msa1262190:CDS |
| TGCACCATTGAAGGCTAAGG+AGG | 0.624890 | 8_2:+64809282 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATAAGTTATTTTAACAA+TGG | + | chr8_2:64808876-64808895 | None:intergenic | 10.0% |
| !!! | TATATAAGTTATTTTAACAA+TGG | + | chr8_2:64808876-64808895 | None:intergenic | 10.0% |
| !! | AATTTACACAAATAAATAGA+GGG | + | chr8_2:64809090-64809109 | None:intergenic | 15.0% |
| !! | TAATTTACACAAATAAATAG+AGG | + | chr8_2:64809091-64809110 | None:intergenic | 15.0% |
| !! | AATTTACACAAATAAATAGA+GGG | + | chr8_2:64809090-64809109 | None:intergenic | 15.0% |
| !! | TAATTTACACAAATAAATAG+AGG | + | chr8_2:64809091-64809110 | None:intergenic | 15.0% |
| !!! | ATTCAATGATTTTAGTTGAA+GGG | + | chr8_2:64808678-64808697 | None:intergenic | 20.0% |
| !! | GATTCATCAACATAATATTT+AGG | + | chr8_2:64808843-64808862 | None:intergenic | 20.0% |
| !! | AGTATCAAAATTCAATGAAA+AGG | + | chr8_2:64808924-64808943 | None:intergenic | 20.0% |
| !!! | TTTTGATACTAATTGCATTT+TGG | - | chr8_2:64808934-64808953 | Msa1262190:intron | 20.0% |
| !!! | TTTGATACTAATTGCATTTT+GGG | - | chr8_2:64808935-64808954 | Msa1262190:intron | 20.0% |
| !!! | TTGATTAGGTTGTTTAATTA+TGG | - | chr8_2:64808959-64808978 | Msa1262190:intron | 20.0% |
| !!! | ATTCAATGATTTTAGTTGAA+GGG | + | chr8_2:64808678-64808697 | None:intergenic | 20.0% |
| !! | GATTCATCAACATAATATTT+AGG | + | chr8_2:64808843-64808862 | None:intergenic | 20.0% |
| !! | AGTATCAAAATTCAATGAAA+AGG | + | chr8_2:64808924-64808943 | None:intergenic | 20.0% |
| !!! | TTTTGATACTAATTGCATTT+TGG | - | chr8_2:64808934-64808953 | Msa1262190:intron | 20.0% |
| !!! | TTTGATACTAATTGCATTTT+GGG | - | chr8_2:64808935-64808954 | Msa1262190:intron | 20.0% |
| !!! | TTGATTAGGTTGTTTAATTA+TGG | - | chr8_2:64808959-64808978 | Msa1262190:intron | 20.0% |
| !!! | TTCAATGATTTTAGTTGAAG+GGG | + | chr8_2:64808677-64808696 | None:intergenic | 25.0% |
| !!! | GATTCAATGATTTTAGTTGA+AGG | + | chr8_2:64808679-64808698 | None:intergenic | 25.0% |
| ! | ATCATTGAATCACATTTCAT+TGG | - | chr8_2:64808688-64808707 | Msa1262190:CDS | 25.0% |
| !!! | TTCAATGATTTTAGTTGAAG+GGG | + | chr8_2:64808677-64808696 | None:intergenic | 25.0% |
| !!! | GATTCAATGATTTTAGTTGA+AGG | + | chr8_2:64808679-64808698 | None:intergenic | 25.0% |
| ! | ATCATTGAATCACATTTCAT+TGG | - | chr8_2:64808688-64808707 | Msa1262190:CDS | 25.0% |
| ! | GATTTTTACGTCAATGTTCT+TGG | - | chr8_2:64808737-64808756 | Msa1262190:CDS | 30.0% |
| !!! | ATTGCATTTTGGGTTTGATT+AGG | - | chr8_2:64808945-64808964 | Msa1262190:intron | 30.0% |
| AGGTTGTTTAATTATGGCAT+TGG | - | chr8_2:64808965-64808984 | Msa1262190:intron | 30.0% | |
| GATATACTTGGAAAGAAATG+TGG | + | chr8_2:64809060-64809079 | None:intergenic | 30.0% | |
| ACAATTGCAGATTTCAATCA+TGG | + | chr8_2:64809292-64809311 | None:intergenic | 30.0% | |
| ! | GATTTTTACGTCAATGTTCT+TGG | - | chr8_2:64808737-64808756 | Msa1262190:CDS | 30.0% |
| !!! | ATTGCATTTTGGGTTTGATT+AGG | - | chr8_2:64808945-64808964 | Msa1262190:intron | 30.0% |
| AGGTTGTTTAATTATGGCAT+TGG | - | chr8_2:64808965-64808984 | Msa1262190:intron | 30.0% | |
| GATATACTTGGAAAGAAATG+TGG | + | chr8_2:64809060-64809079 | None:intergenic | 30.0% | |
| ACAATTGCAGATTTCAATCA+TGG | + | chr8_2:64809292-64809311 | None:intergenic | 30.0% | |
| TTGGCTTCTTTCCTGTTAAA+AGG | - | chr8_2:64808756-64808775 | Msa1262190:CDS | 35.0% | |
| CATTCTTGGTCATACTTTCT+GGG | + | chr8_2:64809015-64809034 | None:intergenic | 35.0% | |
| ACATTCTTGGTCATACTTTC+TGG | + | chr8_2:64809016-64809035 | None:intergenic | 35.0% | |
| TGGATTAATGTGCACATTCT+TGG | + | chr8_2:64809029-64809048 | None:intergenic | 35.0% | |
| GAATGTGCACATTAATCCAA+AGG | - | chr8_2:64809030-64809049 | Msa1262190:CDS | 35.0% | |
| AAAGAAATGTGGTTGTCCTT+TGG | + | chr8_2:64809049-64809068 | None:intergenic | 35.0% | |
| TTGTTGCTAGTGTGAAAGTA+TGG | - | chr8_2:64809158-64809177 | Msa1262190:intron | 35.0% | |
| AAGAACAGAGTAGAGGAAAA+TGG | - | chr8_2:64809225-64809244 | Msa1262190:intron | 35.0% | |
| CAAATTGTGTTCTCTGATAG+AGG | + | chr8_2:64809333-64809352 | None:intergenic | 35.0% | |
| CTCTATCAGAGAACACAATT+TGG | - | chr8_2:64809331-64809350 | Msa1262190:CDS | 35.0% | |
| TTGGCTTCTTTCCTGTTAAA+AGG | - | chr8_2:64808756-64808775 | Msa1262190:CDS | 35.0% | |
| CATTCTTGGTCATACTTTCT+GGG | + | chr8_2:64809015-64809034 | None:intergenic | 35.0% | |
| ACATTCTTGGTCATACTTTC+TGG | + | chr8_2:64809016-64809035 | None:intergenic | 35.0% | |
| TGGATTAATGTGCACATTCT+TGG | + | chr8_2:64809029-64809048 | None:intergenic | 35.0% | |
| GAATGTGCACATTAATCCAA+AGG | - | chr8_2:64809030-64809049 | Msa1262190:CDS | 35.0% | |
| AAAGAAATGTGGTTGTCCTT+TGG | + | chr8_2:64809049-64809068 | None:intergenic | 35.0% | |
| TTGTTGCTAGTGTGAAAGTA+TGG | - | chr8_2:64809158-64809177 | Msa1262190:intron | 35.0% | |
| AAGAACAGAGTAGAGGAAAA+TGG | - | chr8_2:64809225-64809244 | Msa1262190:intron | 35.0% | |
| CAAATTGTGTTCTCTGATAG+AGG | + | chr8_2:64809333-64809352 | None:intergenic | 35.0% | |
| CTCTATCAGAGAACACAATT+TGG | - | chr8_2:64809331-64809350 | Msa1262190:CDS | 35.0% | |
| TACTTTCTGGGTCATCTGAT+TGG | + | chr8_2:64809003-64809022 | None:intergenic | 40.0% | |
| GAGGGAGAGAATGATATACT+TGG | + | chr8_2:64809072-64809091 | None:intergenic | 40.0% | |
| GTATGTGAAGAACAGAGTAG+AGG | - | chr8_2:64809218-64809237 | Msa1262190:intron | 40.0% | |
| TTGTTCTTCCATGATCCAGA+TGG | - | chr8_2:64809264-64809283 | Msa1262190:intron | 40.0% | |
| !! | ATTTCAATCATGGTGCCATC+TGG | + | chr8_2:64809282-64809301 | None:intergenic | 40.0% |
| ! | TTCTCTGATAGAGGTACAAC+TGG | + | chr8_2:64809324-64809343 | None:intergenic | 40.0% |
| TACTTTCTGGGTCATCTGAT+TGG | + | chr8_2:64809003-64809022 | None:intergenic | 40.0% | |
| GAGGGAGAGAATGATATACT+TGG | + | chr8_2:64809072-64809091 | None:intergenic | 40.0% | |
| GTATGTGAAGAACAGAGTAG+AGG | - | chr8_2:64809218-64809237 | Msa1262190:intron | 40.0% | |
| TTGTTCTTCCATGATCCAGA+TGG | - | chr8_2:64809264-64809283 | Msa1262190:intron | 40.0% | |
| !! | ATTTCAATCATGGTGCCATC+TGG | + | chr8_2:64809282-64809301 | None:intergenic | 40.0% |
| ! | TTCTCTGATAGAGGTACAAC+TGG | + | chr8_2:64809324-64809343 | None:intergenic | 40.0% |
| ! | AAGGAGGTAGGCCTTTTAAC+AGG | + | chr8_2:64808770-64808789 | None:intergenic | 45.0% |
| TACGTACCATGCACCATTGA+AGG | + | chr8_2:64808795-64808814 | None:intergenic | 45.0% | |
| ! | GTGTGAAAGTATGGTAGCAG+TGG | - | chr8_2:64809167-64809186 | Msa1262190:intron | 45.0% |
| ! | AAGGAGGTAGGCCTTTTAAC+AGG | + | chr8_2:64808770-64808789 | None:intergenic | 45.0% |
| TACGTACCATGCACCATTGA+AGG | + | chr8_2:64808795-64808814 | None:intergenic | 45.0% | |
| ! | GTGTGAAAGTATGGTAGCAG+TGG | - | chr8_2:64809167-64809186 | Msa1262190:intron | 45.0% |
| CCATTGAAGGCTAAGGAGGT+AGG | + | chr8_2:64808782-64808801 | None:intergenic | 50.0% | |
| ! | CCTACCTCCTTAGCCTTCAA+TGG | - | chr8_2:64808779-64808798 | Msa1262190:CDS | 50.0% |
| TGCACCATTGAAGGCTAAGG+AGG | + | chr8_2:64808786-64808805 | None:intergenic | 50.0% | |
| CCATGCACCATTGAAGGCTA+AGG | + | chr8_2:64808789-64808808 | None:intergenic | 50.0% | |
| ! | CCTTAGCCTTCAATGGTGCA+TGG | - | chr8_2:64808786-64808805 | Msa1262190:CDS | 50.0% |
| CTGGGTCATCTGATTGGAGA+AGG | + | chr8_2:64808997-64809016 | None:intergenic | 50.0% | |
| !! | TCATGGTGCCATCTGGATCA+TGG | + | chr8_2:64809275-64809294 | None:intergenic | 50.0% |
| CCATTGAAGGCTAAGGAGGT+AGG | + | chr8_2:64808782-64808801 | None:intergenic | 50.0% | |
| ! | CCTACCTCCTTAGCCTTCAA+TGG | - | chr8_2:64808779-64808798 | Msa1262190:CDS | 50.0% |
| TGCACCATTGAAGGCTAAGG+AGG | + | chr8_2:64808786-64808805 | None:intergenic | 50.0% | |
| CCATGCACCATTGAAGGCTA+AGG | + | chr8_2:64808789-64808808 | None:intergenic | 50.0% | |
| ! | CCTTAGCCTTCAATGGTGCA+TGG | - | chr8_2:64808786-64808805 | Msa1262190:CDS | 50.0% |
| CTGGGTCATCTGATTGGAGA+AGG | + | chr8_2:64808997-64809016 | None:intergenic | 50.0% | |
| !! | TCATGGTGCCATCTGGATCA+TGG | + | chr8_2:64809275-64809294 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 64808665 | 64809422 | 64808665 | ID=Msa1262190;Name=Msa1262190 |
| chr8_2 | mRNA | 64808665 | 64809422 | 64808665 | ID=Msa1262190-mRNA-1;Parent=Msa1262190;Name=Msa1262190-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|1|1|3|0|167 |
| chr8_2 | exon | 64809280 | 64809422 | 64809280 | ID=Msa1262190-mRNA-1:exon:21004;Parent=Msa1262190-mRNA-1 |
| chr8_2 | exon | 64809015 | 64809120 | 64809015 | ID=Msa1262190-mRNA-1:exon:21003;Parent=Msa1262190-mRNA-1 |
| chr8_2 | exon | 64808665 | 64808919 | 64808665 | ID=Msa1262190-mRNA-1:exon:21002;Parent=Msa1262190-mRNA-1 |
| chr8_2 | CDS | 64809280 | 64809422 | 64809280 | ID=Msa1262190-mRNA-1:cds;Parent=Msa1262190-mRNA-1 |
| chr8_2 | CDS | 64809015 | 64809120 | 64809015 | ID=Msa1262190-mRNA-1:cds;Parent=Msa1262190-mRNA-1 |
| chr8_2 | CDS | 64808665 | 64808919 | 64808665 | ID=Msa1262190-mRNA-1:cds;Parent=Msa1262190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
