AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0889740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0889740 MtrunA17_Chr4g0034981 98.222 225 4 0 1 225 232 456 2.06e-161 459
Msa0889740 MtrunA17_Chr4g0034981 24.215 223 163 4 4 224 342 560 1.43e-12 66.2
Msa0889740 MtrunA17_Chr2g0294671 25.806 186 133 3 40 224 244 425 1.87e-18 83.2
Msa0889740 MtrunA17_Chr2g0294671 31.068 103 71 0 118 220 215 317 3.50e-11 62.0
Msa0889740 MtrunA17_Chr1g0212691 25.000 220 160 2 4 222 104 319 5.35e-17 79.3
Msa0889740 MtrunA17_Chr1g0212691 25.121 207 149 3 21 225 157 359 8.08e-15 72.8
Msa0889740 MtrunA17_Chr5g0445491 23.913 184 137 3 44 224 227 410 6.19e-17 79.0
Msa0889740 MtrunA17_Chr5g0445491 25.676 222 159 5 6 224 225 443 5.14e-13 67.4
Msa0889740 MtrunA17_Chr5g0445491 23.077 182 134 3 43 218 187 368 1.56e-12 66.2
Msa0889740 MtrunA17_Chr4g0043941 24.713 174 129 2 44 215 42 215 8.29e-17 77.8
Msa0889740 MtrunA17_Chr4g0043941 19.535 215 171 2 12 224 46 260 4.13e-13 67.4
Msa0889740 MtrunA17_Chr5g0428941 27.064 218 152 3 7 222 139 351 1.53e-16 77.8
Msa0889740 MtrunA17_Chr8g0391881 24.359 156 118 0 67 222 111 266 1.00e-11 63.5
Msa0889740 MtrunA17_Chr2g0304101 25.455 165 120 3 61 224 84 246 5.06e-11 61.2
Msa0889740 MtrunA17_Chr2g0311181 22.043 186 136 2 39 224 65 241 7.52e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0889740 AT2G21710.2 63.111 225 83 0 1 225 239 463 1.70e-107 320
Msa0889740 AT2G21710.3 63.111 225 83 0 1 225 239 463 2.16e-107 320
Msa0889740 AT2G21710.1 63.111 225 83 0 1 225 239 463 1.33e-106 320
Msa0889740 AT2G21710.1 27.072 181 126 4 46 224 391 567 1.41e-13 69.7
Msa0889740 AT4G38160.4 26.108 203 146 4 26 224 24 226 2.34e-20 88.2
Msa0889740 AT4G38160.4 24.084 191 142 3 37 224 72 262 6.68e-16 75.5
Msa0889740 AT4G38160.1 26.108 203 146 4 26 224 24 226 2.34e-20 88.2
Msa0889740 AT4G38160.1 24.084 191 142 3 37 224 72 262 6.68e-16 75.5
Msa0889740 AT4G38160.2 26.108 203 146 4 26 224 24 226 3.66e-20 87.8
Msa0889740 AT4G38160.2 24.084 191 142 3 37 224 72 262 8.31e-16 75.5
Msa0889740 AT4G38160.3 26.108 203 146 4 26 224 24 226 3.90e-20 87.8
Msa0889740 AT4G38160.3 24.084 191 142 3 37 224 72 262 8.45e-16 75.9
Msa0889740 AT4G02990.2 27.982 218 150 3 7 222 147 359 6.47e-18 82.4
Msa0889740 AT4G02990.1 27.982 218 150 3 7 222 147 359 6.47e-18 82.4
Msa0889740 AT2G44020.1 26.887 212 150 2 4 214 109 316 3.12e-17 80.1
Msa0889740 AT2G44020.1 25.806 186 136 2 42 225 179 364 1.20e-14 72.8
Msa0889740 AT1G78930.1 25.000 224 166 2 2 224 294 516 1.51e-15 75.5
Msa0889740 AT4G14605.2 23.656 186 137 3 40 224 229 410 1.57e-15 75.1
Msa0889740 AT4G14605.2 25.824 182 128 2 43 224 268 442 2.91e-15 74.3
Msa0889740 AT4G14605.1 23.656 186 137 3 40 224 229 410 1.57e-15 75.1
Msa0889740 AT4G14605.1 25.824 182 128 2 43 224 268 442 2.91e-15 74.3
Msa0889740 AT5G55580.2 26.577 222 157 4 6 224 112 330 2.42e-13 68.6
Msa0889740 AT5G55580.2 22.857 175 133 2 46 218 81 255 5.13e-13 67.8
Msa0889740 AT5G55580.3 23.164 177 129 4 44 215 220 394 2.83e-13 68.6
Msa0889740 AT5G55580.3 22.652 181 138 2 40 218 181 361 6.73e-13 67.4
Msa0889740 AT5G55580.1 26.577 222 157 4 6 224 218 436 6.24e-13 67.8
Msa0889740 AT5G55580.1 22.652 181 138 2 40 218 181 361 8.60e-13 67.4

Find 55 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGATTACTTGAAAGAATT+TGG 0.111467 6_1:-59131680 Msa0889740:CDS
GTTAAGTATCTGTACTATTA+TGG 0.143456 6_1:-59131572 Msa0889740:CDS
GTTGATTATTTAGAGTTTAA+TGG 0.191787 6_1:-59132020 Msa0889740:CDS
GGTTTAGATGCGAAGGATTT+TGG 0.193478 6_1:-59131894 Msa0889740:CDS
TGTGCAGTTCTATCTGGATA+TGG 0.253475 6_1:-59131916 Msa0889740:CDS
TCGTTAAGGGAGAGTTTATT+GGG 0.287908 6_1:-59132106 Msa0889740:CDS
TTAAGTATCTGTACTATTAT+GGG 0.290110 6_1:-59131571 Msa0889740:CDS
GTATAGTGACCGAGAGCTTT+AGG 0.334085 6_1:+59131852 None:intergenic
ATTTAGAGTTTAATGGAGTC+AGG 0.343191 6_1:-59132013 Msa0889740:CDS
GGTTCGTGTGCAGTTCTATC+TGG 0.345234 6_1:-59131922 Msa0889740:CDS
TTGATTACTTGAAAGAATTT+GGG 0.348366 6_1:-59131679 Msa0889740:CDS
AGAATTTGGGCTTGAAAGTA+AGG 0.349816 6_1:-59131666 Msa0889740:CDS
TTCGTTAAGGGAGAGTTTAT+TGG 0.350638 6_1:-59132107 Msa0889740:CDS
TGCATTTCGGCCACAATTGA+TGG 0.381846 6_1:-59131627 Msa0889740:CDS
GTTGAAGTCGGTGTTCGTTA+AGG 0.394030 6_1:-59132120 Msa0889740:CDS
ATAGCCTTTACAAGAAGATT+AGG 0.395908 6_1:-59131198 Msa0889740:CDS
TTGAAGTCGGTGTTCGTTAA+GGG 0.416290 6_1:-59132119 Msa0889740:CDS
GTGCAGTTCTATCTGGATAT+GGG 0.421836 6_1:-59131915 Msa0889740:CDS
TTGGTAAGTTGCTTGCATTT+CGG 0.429654 6_1:-59131640 Msa0889740:CDS
TGGAGTCAGGAGGGAATGGA+TGG 0.438671 6_1:-59132000 Msa0889740:CDS
AGCTCTCGGTCACTATACTT+TGG 0.485000 6_1:-59131847 Msa0889740:CDS
TTAATGGAGTCAGGAGGGAA+TGG 0.490995 6_1:-59132004 Msa0889740:CDS
AGGCTATAAGTGAGTAGAGT+GGG 0.491093 6_1:+59131214 None:intergenic
GGGCTTGAAAGTAAGGATGT+TGG 0.497791 6_1:-59131659 Msa0889740:CDS
AGAGTTTAATGGAGTCAGGA+GGG 0.498246 6_1:-59132009 Msa0889740:CDS
GACCTAGGGGTTCGAAATGA+CGG 0.512080 6_1:-59131262 Msa0889740:CDS
GAAGTTGTTATCTTACAGCT+TGG 0.512987 6_1:-59131955 Msa0889740:CDS
GCTGCGGAGTGACGGGGAGT+TGG 0.513594 6_1:-59132051 Msa0889740:CDS
CATTCTCCTCATCCCATCTC+GGG 0.520803 6_1:+59131544 None:intergenic
GCATTCTCCTCATCCCATCT+CGG 0.523104 6_1:+59131543 None:intergenic
GGATTACCCGAGATGGGATG+AGG 0.534187 6_1:-59131550 Msa0889740:CDS
CAGGCCTAATCTTCTTGTAA+AGG 0.535894 6_1:+59131194 None:intergenic
ACCTAGGGGTTCGAAATGAC+GGG 0.539793 6_1:-59131261 Msa0889740:CDS
TATTATGGGATTACCCGAGA+TGG 0.548665 6_1:-59131557 Msa0889740:CDS
ATGCTGCACGCCATCAATTG+TGG 0.553984 6_1:+59131617 None:intergenic
CGTTAAGGGAGAGTTTATTG+GGG 0.561027 6_1:-59132105 Msa0889740:CDS
TAGAGTTTAATGGAGTCAGG+AGG 0.565616 6_1:-59132010 Msa0889740:CDS
ATTATGGGATTACCCGAGAT+GGG 0.565768 6_1:-59131556 Msa0889740:CDS
GGATATGGGTTTAGATGCGA+AGG 0.566566 6_1:-59131901 Msa0889740:CDS
AAGGCTATAAGTGAGTAGAG+TGG 0.574897 6_1:+59131213 None:intergenic
TTACAGCTTGGAAGAAGTGA+AGG 0.575349 6_1:-59131943 Msa0889740:CDS
AATGCTTACAATTAAACCAA+TGG 0.584764 6_1:-59131525 Msa0889740:CDS
TAGTACAGATACTTAACAAG+AGG 0.586183 6_1:+59131578 None:intergenic
AAGTCAACACAAAAGACCAT+TGG 0.586719 6_1:+59131509 None:intergenic
GGAGATGACTATTGTGCCAA+AGG 0.586961 6_1:-59131486 Msa0889740:intron
TTACAAGAAGATTAGGCCTG+TGG 0.602463 6_1:-59131191 None:intergenic
GGATGGGTTATGTTGTGAGT+CGG 0.603970 6_1:-59131983 Msa0889740:CDS
CGTGCAGCATTGAAGAACAA+TGG 0.604478 6_1:-59131604 Msa0889740:CDS
GGAGTCAGGAGGGAATGGAT+GGG 0.605621 6_1:-59131999 Msa0889740:CDS
AAGCTGTAAGATAACAACTT+CGG 0.628272 6_1:+59131957 None:intergenic
CCGTGTTGAGTGGTTGAAGT+CGG 0.637384 6_1:-59132132 Msa0889740:CDS
CTATAAGGAACCGTGTTGAG+TGG 0.637525 6_1:-59132142 Msa0889740:CDS
CCGACTTCAACCACTCAACA+CGG 0.641986 6_1:+59132132 None:intergenic
TTTGGAAGAAATGAGCCGAA+AGG 0.661203 6_1:-59131829 Msa0889740:intron
TCCCGTCATTTCGAACCCCT+AGG 0.681388 6_1:+59131260 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTGACAAACTTTAT+AGG - chr6_1:59131549-59131568 Msa0889740:CDS 15.0%
!!! AATTTTTGACAAACTTTATA+GGG - chr6_1:59131550-59131569 Msa0889740:CDS 15.0%
!! TAAAAAAATTTACATACCTT+TGG + chr6_1:59131883-59131902 None:intergenic 15.0%
!! TTCATAAATAAAATTTCCAA+TGG - chr6_1:59131989-59132008 Msa0889740:CDS 15.0%
!!! TAATTTTTGACAAACTTTAT+AGG - chr6_1:59131549-59131568 Msa0889740:CDS 15.0%
!!! AATTTTTGACAAACTTTATA+GGG - chr6_1:59131550-59131569 Msa0889740:CDS 15.0%
!! TAAAAAAATTTACATACCTT+TGG + chr6_1:59131883-59131902 None:intergenic 15.0%
!! TTCATAAATAAAATTTCCAA+TGG - chr6_1:59131989-59132008 Msa0889740:CDS 15.0%
!!! GTTGATTATTTAGAGTTTAA+TGG - chr6_1:59131330-59131349 Msa0889740:intron 20.0%
!! TCAAAAATTAATGTACCTTT+CGG + chr6_1:59131539-59131558 None:intergenic 20.0%
!! TTGATTACTTGAAAGAATTT+GGG - chr6_1:59131671-59131690 Msa0889740:CDS 20.0%
!! TTAAGTATCTGTACTATTAT+GGG - chr6_1:59131779-59131798 Msa0889740:intron 20.0%
!!! TGTTACATATTTTATCATGA+AGG - chr6_1:59132051-59132070 Msa0889740:CDS 20.0%
!!! GTTGATTATTTAGAGTTTAA+TGG - chr6_1:59131330-59131349 Msa0889740:intron 20.0%
!! TCAAAAATTAATGTACCTTT+CGG + chr6_1:59131539-59131558 None:intergenic 20.0%
!! TTGATTACTTGAAAGAATTT+GGG - chr6_1:59131671-59131690 Msa0889740:CDS 20.0%
!! TTAAGTATCTGTACTATTAT+GGG - chr6_1:59131779-59131798 Msa0889740:intron 20.0%
!!! TGTTACATATTTTATCATGA+AGG - chr6_1:59132051-59132070 Msa0889740:CDS 20.0%
! TTTAGGAAAATCAAAAACCA+TGG + chr6_1:59131484-59131503 None:intergenic 25.0%
! ATGCAACAATTGTAAATTTC+AGG - chr6_1:59131648-59131667 Msa0889740:CDS 25.0%
! GTTGATTACTTGAAAGAATT+TGG - chr6_1:59131670-59131689 Msa0889740:CDS 25.0%
! GTTAAGTATCTGTACTATTA+TGG - chr6_1:59131778-59131797 Msa0889740:intron 25.0%
! AATGCTTACAATTAAACCAA+TGG - chr6_1:59131825-59131844 Msa0889740:intron 25.0%
!! ATTGTCAGTATTTTATCATC+AGG + chr6_1:59132029-59132048 None:intergenic 25.0%
! TTTAGGAAAATCAAAAACCA+TGG + chr6_1:59131484-59131503 None:intergenic 25.0%
! ATGCAACAATTGTAAATTTC+AGG - chr6_1:59131648-59131667 Msa0889740:CDS 25.0%
! GTTGATTACTTGAAAGAATT+TGG - chr6_1:59131670-59131689 Msa0889740:CDS 25.0%
! GTTAAGTATCTGTACTATTA+TGG - chr6_1:59131778-59131797 Msa0889740:intron 25.0%
! AATGCTTACAATTAAACCAA+TGG - chr6_1:59131825-59131844 Msa0889740:intron 25.0%
!! ATTGTCAGTATTTTATCATC+AGG + chr6_1:59132029-59132048 None:intergenic 25.0%
! ATTTAGAGTTTAATGGAGTC+AGG - chr6_1:59131337-59131356 Msa0889740:intron 30.0%
AAGCTGTAAGATAACAACTT+CGG + chr6_1:59131396-59131415 None:intergenic 30.0%
!! TTTGATTTTCCTAAAGCTCT+CGG - chr6_1:59131489-59131508 Msa0889740:CDS 30.0%
TAGTACAGATACTTAACAAG+AGG + chr6_1:59131775-59131794 None:intergenic 30.0%
!!! CATGAAGGTAAAGTTTTTTC+AGG - chr6_1:59132066-59132085 Msa0889740:CDS 30.0%
!!! TAAAGTTTTTTCAGGACCTA+GGG - chr6_1:59132074-59132093 Msa0889740:CDS 30.0%
ATAGCCTTTACAAGAAGATT+AGG - chr6_1:59132152-59132171 Msa0889740:CDS 30.0%
! ATTTAGAGTTTAATGGAGTC+AGG - chr6_1:59131337-59131356 Msa0889740:intron 30.0%
AAGCTGTAAGATAACAACTT+CGG + chr6_1:59131396-59131415 None:intergenic 30.0%
!! TTTGATTTTCCTAAAGCTCT+CGG - chr6_1:59131489-59131508 Msa0889740:CDS 30.0%
TAGTACAGATACTTAACAAG+AGG + chr6_1:59131775-59131794 None:intergenic 30.0%
!!! CATGAAGGTAAAGTTTTTTC+AGG - chr6_1:59132066-59132085 Msa0889740:CDS 30.0%
!!! TAAAGTTTTTTCAGGACCTA+GGG - chr6_1:59132074-59132093 Msa0889740:CDS 30.0%
ATAGCCTTTACAAGAAGATT+AGG - chr6_1:59132152-59132171 Msa0889740:CDS 30.0%
TTCGTTAAGGGAGAGTTTAT+TGG - chr6_1:59131243-59131262 Msa0889740:CDS 35.0%
TCGTTAAGGGAGAGTTTATT+GGG - chr6_1:59131244-59131263 Msa0889740:CDS 35.0%
GAAGTTGTTATCTTACAGCT+TGG - chr6_1:59131395-59131414 Msa0889740:intron 35.0%
AAGTATGAGAGAAGACAACA+AGG + chr6_1:59131598-59131617 None:intergenic 35.0%
AGAATTTGGGCTTGAAAGTA+AGG - chr6_1:59131684-59131703 Msa0889740:intron 35.0%
TTGGTAAGTTGCTTGCATTT+CGG - chr6_1:59131710-59131729 Msa0889740:intron 35.0%
AAGTCAACACAAAAGACCAT+TGG + chr6_1:59131844-59131863 None:intergenic 35.0%
!!! AATGGTCTTTTGTGTTGACT+TGG - chr6_1:59131843-59131862 Msa0889740:CDS 35.0%
GGAAACATAACAGAAACCAT+TGG + chr6_1:59132008-59132027 None:intergenic 35.0%
!!! GTAAAGTTTTTTCAGGACCT+AGG - chr6_1:59132073-59132092 Msa0889740:CDS 35.0%
!!! AAAGTTTTTTCAGGACCTAG+GGG - chr6_1:59132075-59132094 Msa0889740:CDS 35.0%
! GGGAAATTTTACAAGCATGT+TGG + chr6_1:59132119-59132138 None:intergenic 35.0%
TTCGTTAAGGGAGAGTTTAT+TGG - chr6_1:59131243-59131262 Msa0889740:CDS 35.0%
TCGTTAAGGGAGAGTTTATT+GGG - chr6_1:59131244-59131263 Msa0889740:CDS 35.0%
GAAGTTGTTATCTTACAGCT+TGG - chr6_1:59131395-59131414 Msa0889740:intron 35.0%
AAGTATGAGAGAAGACAACA+AGG + chr6_1:59131598-59131617 None:intergenic 35.0%
AGAATTTGGGCTTGAAAGTA+AGG - chr6_1:59131684-59131703 Msa0889740:intron 35.0%
TTGGTAAGTTGCTTGCATTT+CGG - chr6_1:59131710-59131729 Msa0889740:intron 35.0%
AAGTCAACACAAAAGACCAT+TGG + chr6_1:59131844-59131863 None:intergenic 35.0%
!!! AATGGTCTTTTGTGTTGACT+TGG - chr6_1:59131843-59131862 Msa0889740:CDS 35.0%
GGAAACATAACAGAAACCAT+TGG + chr6_1:59132008-59132027 None:intergenic 35.0%
!!! GTAAAGTTTTTTCAGGACCT+AGG - chr6_1:59132073-59132092 Msa0889740:CDS 35.0%
!!! AAAGTTTTTTCAGGACCTAG+GGG - chr6_1:59132075-59132094 Msa0889740:CDS 35.0%
! GGGAAATTTTACAAGCATGT+TGG + chr6_1:59132119-59132138 None:intergenic 35.0%
GAGGGAAACTTGAGTCTATA+AGG - chr6_1:59131193-59131212 Msa0889740:CDS 40.0%
! TTGAAGTCGGTGTTCGTTAA+GGG - chr6_1:59131231-59131250 Msa0889740:CDS 40.0%
CGTTAAGGGAGAGTTTATTG+GGG - chr6_1:59131245-59131264 Msa0889740:CDS 40.0%
GGGGATGCAATGTTAAAAAG+TGG - chr6_1:59131264-59131283 Msa0889740:CDS 40.0%
! GTGGAGATAATGTTTTGCTG+CGG - chr6_1:59131283-59131302 Msa0889740:intron 40.0%
TAGAGTTTAATGGAGTCAGG+AGG - chr6_1:59131340-59131359 Msa0889740:intron 40.0%
AGAGTTTAATGGAGTCAGGA+GGG - chr6_1:59131341-59131360 Msa0889740:intron 40.0%
TTACAGCTTGGAAGAAGTGA+AGG - chr6_1:59131407-59131426 Msa0889740:intron 40.0%
TGTGCAGTTCTATCTGGATA+TGG - chr6_1:59131434-59131453 Msa0889740:intron 40.0%
GTGCAGTTCTATCTGGATAT+GGG - chr6_1:59131435-59131454 Msa0889740:intron 40.0%
! GGTTTAGATGCGAAGGATTT+TGG - chr6_1:59131456-59131475 Msa0889740:intron 40.0%
TTTGGAAGAAATGAGCCGAA+AGG - chr6_1:59131521-59131540 Msa0889740:CDS 40.0%
TATTATGGGATTACCCGAGA+TGG - chr6_1:59131793-59131812 Msa0889740:intron 40.0%
ATTATGGGATTACCCGAGAT+GGG - chr6_1:59131794-59131813 Msa0889740:intron 40.0%
AGGCTATAAGTGAGTAGAGT+GGG + chr6_1:59132139-59132158 None:intergenic 40.0%
AAGGCTATAAGTGAGTAGAG+TGG + chr6_1:59132140-59132159 None:intergenic 40.0%
CAGGCCTAATCTTCTTGTAA+AGG + chr6_1:59132159-59132178 None:intergenic 40.0%
GAGGGAAACTTGAGTCTATA+AGG - chr6_1:59131193-59131212 Msa0889740:CDS 40.0%
! TTGAAGTCGGTGTTCGTTAA+GGG - chr6_1:59131231-59131250 Msa0889740:CDS 40.0%
CGTTAAGGGAGAGTTTATTG+GGG - chr6_1:59131245-59131264 Msa0889740:CDS 40.0%
GGGGATGCAATGTTAAAAAG+TGG - chr6_1:59131264-59131283 Msa0889740:CDS 40.0%
! GTGGAGATAATGTTTTGCTG+CGG - chr6_1:59131283-59131302 Msa0889740:intron 40.0%
TAGAGTTTAATGGAGTCAGG+AGG - chr6_1:59131340-59131359 Msa0889740:intron 40.0%
AGAGTTTAATGGAGTCAGGA+GGG - chr6_1:59131341-59131360 Msa0889740:intron 40.0%
TTACAGCTTGGAAGAAGTGA+AGG - chr6_1:59131407-59131426 Msa0889740:intron 40.0%
TGTGCAGTTCTATCTGGATA+TGG - chr6_1:59131434-59131453 Msa0889740:intron 40.0%
GTGCAGTTCTATCTGGATAT+GGG - chr6_1:59131435-59131454 Msa0889740:intron 40.0%
! GGTTTAGATGCGAAGGATTT+TGG - chr6_1:59131456-59131475 Msa0889740:intron 40.0%
TTTGGAAGAAATGAGCCGAA+AGG - chr6_1:59131521-59131540 Msa0889740:CDS 40.0%
TATTATGGGATTACCCGAGA+TGG - chr6_1:59131793-59131812 Msa0889740:intron 40.0%
ATTATGGGATTACCCGAGAT+GGG - chr6_1:59131794-59131813 Msa0889740:intron 40.0%
AGGCTATAAGTGAGTAGAGT+GGG + chr6_1:59132139-59132158 None:intergenic 40.0%
AAGGCTATAAGTGAGTAGAG+TGG + chr6_1:59132140-59132159 None:intergenic 40.0%
CAGGCCTAATCTTCTTGTAA+AGG + chr6_1:59132159-59132178 None:intergenic 40.0%
CTATAAGGAACCGTGTTGAG+TGG - chr6_1:59131208-59131227 Msa0889740:CDS 45.0%
! GTTGAAGTCGGTGTTCGTTA+AGG - chr6_1:59131230-59131249 Msa0889740:CDS 45.0%
! AATGTTTTGCTGCGGAGTGA+CGG - chr6_1:59131291-59131310 Msa0889740:intron 45.0%
TTAATGGAGTCAGGAGGGAA+TGG - chr6_1:59131346-59131365 Msa0889740:intron 45.0%
!! GGATGGGTTATGTTGTGAGT+CGG - chr6_1:59131367-59131386 Msa0889740:intron 45.0%
GGATATGGGTTTAGATGCGA+AGG - chr6_1:59131449-59131468 Msa0889740:intron 45.0%
GTATAGTGACCGAGAGCTTT+AGG + chr6_1:59131501-59131520 None:intergenic 45.0%
AGCTCTCGGTCACTATACTT+TGG - chr6_1:59131503-59131522 Msa0889740:CDS 45.0%
GGGCTTGAAAGTAAGGATGT+TGG - chr6_1:59131691-59131710 Msa0889740:intron 45.0%
TGCATTTCGGCCACAATTGA+TGG - chr6_1:59131723-59131742 Msa0889740:intron 45.0%
! CGTGCAGCATTGAAGAACAA+TGG - chr6_1:59131746-59131765 Msa0889740:intron 45.0%
GGAGATGACTATTGTGCCAA+AGG - chr6_1:59131864-59131883 Msa0889740:CDS 45.0%
CTATAAGGAACCGTGTTGAG+TGG - chr6_1:59131208-59131227 Msa0889740:CDS 45.0%
! GTTGAAGTCGGTGTTCGTTA+AGG - chr6_1:59131230-59131249 Msa0889740:CDS 45.0%
! AATGTTTTGCTGCGGAGTGA+CGG - chr6_1:59131291-59131310 Msa0889740:intron 45.0%
TTAATGGAGTCAGGAGGGAA+TGG - chr6_1:59131346-59131365 Msa0889740:intron 45.0%
!! GGATGGGTTATGTTGTGAGT+CGG - chr6_1:59131367-59131386 Msa0889740:intron 45.0%
GGATATGGGTTTAGATGCGA+AGG - chr6_1:59131449-59131468 Msa0889740:intron 45.0%
GTATAGTGACCGAGAGCTTT+AGG + chr6_1:59131501-59131520 None:intergenic 45.0%
AGCTCTCGGTCACTATACTT+TGG - chr6_1:59131503-59131522 Msa0889740:CDS 45.0%
GGGCTTGAAAGTAAGGATGT+TGG - chr6_1:59131691-59131710 Msa0889740:intron 45.0%
TGCATTTCGGCCACAATTGA+TGG - chr6_1:59131723-59131742 Msa0889740:intron 45.0%
! CGTGCAGCATTGAAGAACAA+TGG - chr6_1:59131746-59131765 Msa0889740:intron 45.0%
GGAGATGACTATTGTGCCAA+AGG - chr6_1:59131864-59131883 Msa0889740:CDS 45.0%
CCGACTTCAACCACTCAACA+CGG + chr6_1:59131221-59131240 None:intergenic 50.0%
CCGTGTTGAGTGGTTGAAGT+CGG - chr6_1:59131218-59131237 Msa0889740:CDS 50.0%
! ATGTTTTGCTGCGGAGTGAC+GGG - chr6_1:59131292-59131311 Msa0889740:intron 50.0%
GGTTCGTGTGCAGTTCTATC+TGG - chr6_1:59131428-59131447 Msa0889740:intron 50.0%
!! TGCGAAGGATTTTGGCACCA+TGG - chr6_1:59131464-59131483 Msa0889740:intron 50.0%
ATGCTGCACGCCATCAATTG+TGG + chr6_1:59131736-59131755 None:intergenic 50.0%
CATTCTCCTCATCCCATCTC+GGG + chr6_1:59131809-59131828 None:intergenic 50.0%
GCATTCTCCTCATCCCATCT+CGG + chr6_1:59131810-59131829 None:intergenic 50.0%
GACCTAGGGGTTCGAAATGA+CGG - chr6_1:59132088-59132107 Msa0889740:CDS 50.0%
ACCTAGGGGTTCGAAATGAC+GGG - chr6_1:59132089-59132108 Msa0889740:CDS 50.0%
CCGACTTCAACCACTCAACA+CGG + chr6_1:59131221-59131240 None:intergenic 50.0%
CCGTGTTGAGTGGTTGAAGT+CGG - chr6_1:59131218-59131237 Msa0889740:CDS 50.0%
! ATGTTTTGCTGCGGAGTGAC+GGG - chr6_1:59131292-59131311 Msa0889740:intron 50.0%
GGTTCGTGTGCAGTTCTATC+TGG - chr6_1:59131428-59131447 Msa0889740:intron 50.0%
!! TGCGAAGGATTTTGGCACCA+TGG - chr6_1:59131464-59131483 Msa0889740:intron 50.0%
ATGCTGCACGCCATCAATTG+TGG + chr6_1:59131736-59131755 None:intergenic 50.0%
CATTCTCCTCATCCCATCTC+GGG + chr6_1:59131809-59131828 None:intergenic 50.0%
GCATTCTCCTCATCCCATCT+CGG + chr6_1:59131810-59131829 None:intergenic 50.0%
GACCTAGGGGTTCGAAATGA+CGG - chr6_1:59132088-59132107 Msa0889740:CDS 50.0%
ACCTAGGGGTTCGAAATGAC+GGG - chr6_1:59132089-59132108 Msa0889740:CDS 50.0%
! TGTTTTGCTGCGGAGTGACG+GGG - chr6_1:59131293-59131312 Msa0889740:intron 55.0%
TGGAGTCAGGAGGGAATGGA+TGG - chr6_1:59131350-59131369 Msa0889740:intron 55.0%
GGAGTCAGGAGGGAATGGAT+GGG - chr6_1:59131351-59131370 Msa0889740:intron 55.0%
GGATTACCCGAGATGGGATG+AGG - chr6_1:59131800-59131819 Msa0889740:intron 55.0%
TCCCGTCATTTCGAACCCCT+AGG + chr6_1:59132093-59132112 None:intergenic 55.0%
! TGTTTTGCTGCGGAGTGACG+GGG - chr6_1:59131293-59131312 Msa0889740:intron 55.0%
TGGAGTCAGGAGGGAATGGA+TGG - chr6_1:59131350-59131369 Msa0889740:intron 55.0%
GGAGTCAGGAGGGAATGGAT+GGG - chr6_1:59131351-59131370 Msa0889740:intron 55.0%
GGATTACCCGAGATGGGATG+AGG - chr6_1:59131800-59131819 Msa0889740:intron 55.0%
TCCCGTCATTTCGAACCCCT+AGG + chr6_1:59132093-59132112 None:intergenic 55.0%
! GCTGCGGAGTGACGGGGAGT+TGG - chr6_1:59131299-59131318 Msa0889740:intron 70.0%
! GCTGCGGAGTGACGGGGAGT+TGG - chr6_1:59131299-59131318 Msa0889740:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 59131192 59132180 59131192 ID=Msa0889740;Name=Msa0889740
chr6_1 mRNA 59131192 59132180 59131192 ID=Msa0889740-mRNA-1;Parent=Msa0889740;Name=Msa0889740-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.66|1|1|1|3|0|225
chr6_1 exon 59131192 59131299 59131192 ID=Msa0889740-mRNA-1:exon:11306;Parent=Msa0889740-mRNA-1
chr6_1 exon 59131487 59131702 59131487 ID=Msa0889740-mRNA-1:exon:11305;Parent=Msa0889740-mRNA-1
chr6_1 exon 59131830 59132180 59131830 ID=Msa0889740-mRNA-1:exon:11304;Parent=Msa0889740-mRNA-1
chr6_1 CDS 59131830 59132180 59131830 ID=Msa0889740-mRNA-1:cds;Parent=Msa0889740-mRNA-1
chr6_1 CDS 59131487 59131702 59131487 ID=Msa0889740-mRNA-1:cds;Parent=Msa0889740-mRNA-1
chr6_1 CDS 59131192 59131299 59131192 ID=Msa0889740-mRNA-1:cds;Parent=Msa0889740-mRNA-1
Gene Sequence

>Msa0889740

AGAGGGAAACTTGAGTCTATAAGGAACCGTGTTGAGTGGTTGAAGTCGGTGTTCGTTAAGGGAGAGTTTATTGGGGATGCAATGTTAAAAAGTGGAGATAATGTTTTGCTGCGGAGTGACGGGGAGTTGGATGAGATTGTTGATTATTTAGAGTTTAATGGAGTCAGGAGGGAATGGATGGGTTATGTTGTGAGTCGGTGTCCGAAGTTGTTATCTTACAGCTTGGAAGAAGTGAAGGTTCGTGTGCAGTTCTATCTGGATATGGGTTTAGATGCGAAGGATTTTGGCACCATGGTTTTTGATTTTCCTAAAGCTCTCGGTCACTATACTTTGGAAGAAATGAGCCGAAAGGTTGATTACTTGAAAGAATTTGGGCTTGAAAGTAAGGATGTTGGTAAGTTGCTTGCATTTCGGCCACAATTGATGGCGTGCAGCATTGAAGAACAATGGAAACCTCTTGTTAAGTATCTGTACTATTATGGGATTACCCGAGATGGGATGAGGAGAATGCTTACAATTAAACCAATGGTCTTTTGTGTTGACTTGGAGATGACTATTGTGCCAAAGGTAAAGTTTTTTCAGGACCTAGGGGTTCGAAATGACGGGATTGCCAACATGCTTGTAAAATTTCCCACTCTACTCACTTATAGCCTTTACAAGAAGATTAGGCCTGTG

Protein sequence

>Msa0889740

RGKLESIRNRVEWLKSVFVKGEFIGDAMLKSGDNVLLRSDGELDEIVDYLEFNGVRREWMGYVVSRCPKLLSYSLEEVKVRVQFYLDMGLDAKDFGTMVFDFPKALGHYTLEEMSRKVDYLKEFGLESKDVGKLLAFRPQLMACSIEEQWKPLVKYLYYYGITRDGMRRMLTIKPMVFCVDLEMTIVPKVKFFQDLGVRNDGIANMLVKFPTLLTYSLYKKIRPV