Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068917.t1 | XP_024632340.1 | 96.3 | 161 | 6 | 0 | 1 | 161 | 1 | 161 | 2.10E-81 | 311.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068917.t1 | Q9SX65 | 63.5 | 156 | 55 | 1 | 6 | 161 | 3 | 156 | 1.7e-50 | 200.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068917.t1 | I3S426 | 96.3 | 161 | 6 | 0 | 1 | 161 | 1 | 161 | 1.5e-81 | 311.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene068917 | -0.806463 | 8.13E-50 | -1.69E-46 |
| MS.gene049217 | MS.gene068917 | -0.828578 | 8.32E-55 | -1.69E-46 |
| MS.gene049222 | MS.gene068917 | -0.80887 | 2.50E-50 | -1.69E-46 |
| MS.gene049232 | MS.gene068917 | -0.816793 | 4.60E-52 | -1.69E-46 |
| MS.gene049259 | MS.gene068917 | 0.872342 | 3.42E-67 | -1.69E-46 |
| MS.gene049281 | MS.gene068917 | 0.80849 | 3.02E-50 | -1.69E-46 |
| MS.gene049285 | MS.gene068917 | -0.815732 | 7.95E-52 | -1.69E-46 |
| MS.gene049320 | MS.gene068917 | -0.85072 | 1.41E-60 | -1.69E-46 |
| MS.gene049483 | MS.gene068917 | 0.813965 | 1.96E-51 | -1.69E-46 |
| MS.gene049611 | MS.gene068917 | 0.836282 | 1.03E-56 | -1.69E-46 |
| MS.gene049633 | MS.gene068917 | -0.804895 | 1.73E-49 | -1.69E-46 |
| MS.gene049634 | MS.gene068917 | 0.829642 | 4.59E-55 | -1.69E-46 |
| MS.gene050082 | MS.gene068917 | 0.825025 | 5.87E-54 | -1.69E-46 |
| MS.gene05010 | MS.gene068917 | -0.800846 | 1.19E-48 | -1.69E-46 |
| MS.gene050163 | MS.gene068917 | -0.809529 | 1.81E-50 | -1.69E-46 |
| MS.gene050165 | MS.gene068917 | -0.819918 | 9.02E-53 | -1.69E-46 |
| MS.gene050173 | MS.gene068917 | 0.826012 | 3.43E-54 | -1.69E-46 |
| MS.gene050216 | MS.gene068917 | -0.828769 | 7.48E-55 | -1.69E-46 |
| MS.gene050323 | MS.gene068917 | -0.821277 | 4.40E-53 | -1.69E-46 |
| MS.gene050333 | MS.gene068917 | -0.833295 | 5.79E-56 | -1.69E-46 |
| MS.gene050380 | MS.gene068917 | 0.803317 | 3.69E-49 | -1.69E-46 |
| MS.gene050381 | MS.gene068917 | 0.874101 | 8.79E-68 | -1.69E-46 |
| MS.gene050496 | MS.gene068917 | -0.810562 | 1.08E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene068917 | -0.846541 | 2.04E-59 | -1.69E-46 |
| MS.gene050518 | MS.gene068917 | -0.811844 | 5.71E-51 | -1.69E-46 |
| MS.gene050577 | MS.gene068917 | -0.8101 | 1.36E-50 | -1.69E-46 |
| MS.gene050612 | MS.gene068917 | -0.856694 | 2.71E-62 | -1.69E-46 |
| MS.gene050675 | MS.gene068917 | -0.829699 | 4.45E-55 | -1.69E-46 |
| MS.gene050699 | MS.gene068917 | -0.809486 | 1.85E-50 | -1.69E-46 |
| MS.gene050772 | MS.gene068917 | -0.800942 | 1.14E-48 | -1.69E-46 |
| MS.gene050832 | MS.gene068917 | 0.812047 | 5.16E-51 | -1.69E-46 |
| MS.gene050833 | MS.gene068917 | 0.814488 | 1.50E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene068917 | -0.826993 | 2.00E-54 | -1.69E-46 |
| MS.gene050871 | MS.gene068917 | -0.825958 | 3.53E-54 | -1.69E-46 |
| MS.gene050883 | MS.gene068917 | 0.869129 | 3.90E-66 | -1.69E-46 |
| MS.gene050986 | MS.gene068917 | -0.826043 | 3.37E-54 | -1.69E-46 |
| MS.gene051044 | MS.gene068917 | 0.835301 | 1.82E-56 | -1.69E-46 |
| MS.gene05104 | MS.gene068917 | 0.845396 | 4.17E-59 | -1.69E-46 |
| MS.gene051127 | MS.gene068917 | 0.875002 | 4.34E-68 | -1.69E-46 |
| MS.gene051138 | MS.gene068917 | 0.850509 | 1.62E-60 | -1.69E-46 |
| MS.gene051364 | MS.gene068917 | 0.828166 | 1.05E-54 | -1.69E-46 |
| MS.gene051366 | MS.gene068917 | 0.820456 | 6.79E-53 | -1.69E-46 |
| MS.gene051367 | MS.gene068917 | 0.810432 | 1.16E-50 | -1.69E-46 |
| MS.gene051422 | MS.gene068917 | 0.815007 | 1.15E-51 | -1.69E-46 |
| MS.gene051632 | MS.gene068917 | 0.804342 | 2.26E-49 | -1.69E-46 |
| MS.gene051810 | MS.gene068917 | -0.802258 | 6.11E-49 | -1.69E-46 |
| MS.gene051863 | MS.gene068917 | 0.824842 | 6.48E-54 | -1.69E-46 |
| MS.gene051946 | MS.gene068917 | 0.828332 | 9.54E-55 | -1.69E-46 |
| MS.gene052164 | MS.gene068917 | -0.825204 | 5.33E-54 | -1.69E-46 |
| MS.gene052211 | MS.gene068917 | 0.809335 | 1.99E-50 | -1.69E-46 |
| MS.gene052482 | MS.gene068917 | -0.830544 | 2.77E-55 | -1.69E-46 |
| MS.gene052486 | MS.gene068917 | -0.840997 | 6.21E-58 | -1.69E-46 |
| MS.gene052805 | MS.gene068917 | 0.800994 | 1.11E-48 | -1.69E-46 |
| MS.gene052916 | MS.gene068917 | -0.821368 | 4.19E-53 | -1.69E-46 |
| MS.gene053420 | MS.gene068917 | 0.888171 | 7.48E-73 | -1.69E-46 |
| MS.gene053488 | MS.gene068917 | 0.85428 | 1.37E-61 | -1.69E-46 |
| MS.gene053561 | MS.gene068917 | 0.874888 | 4.75E-68 | -1.69E-46 |
| MS.gene053826 | MS.gene068917 | 0.810714 | 1.00E-50 | -1.69E-46 |
| MS.gene053887 | MS.gene068917 | 0.811688 | 6.18E-51 | -1.69E-46 |
| MS.gene054054 | MS.gene068917 | 0.808682 | 2.75E-50 | -1.69E-46 |
| MS.gene054056 | MS.gene068917 | 0.838778 | 2.35E-57 | -1.69E-46 |
| MS.gene054616 | MS.gene068917 | 0.827175 | 1.81E-54 | -1.69E-46 |
| MS.gene054642 | MS.gene068917 | -0.821274 | 4.41E-53 | -1.69E-46 |
| MS.gene054708 | MS.gene068917 | 0.830125 | 3.50E-55 | -1.69E-46 |
| MS.gene054954 | MS.gene068917 | -0.826752 | 2.28E-54 | -1.69E-46 |
| MS.gene055124 | MS.gene068917 | 0.863679 | 2.10E-64 | -1.69E-46 |
| MS.gene055154 | MS.gene068917 | 0.890733 | 7.54E-74 | -1.69E-46 |
| MS.gene055202 | MS.gene068917 | 0.837488 | 5.05E-57 | -1.69E-46 |
| MS.gene055362 | MS.gene068917 | -0.837849 | 4.08E-57 | -1.69E-46 |
| MS.gene055502 | MS.gene068917 | -0.842695 | 2.21E-58 | -1.69E-46 |
| MS.gene055577 | MS.gene068917 | -0.812248 | 4.66E-51 | -1.69E-46 |
| MS.gene055748 | MS.gene068917 | -0.804416 | 2.18E-49 | -1.69E-46 |
| MS.gene055750 | MS.gene068917 | -0.831163 | 1.95E-55 | -1.69E-46 |
| MS.gene055751 | MS.gene068917 | -0.822551 | 2.23E-53 | -1.69E-46 |
| MS.gene055776 | MS.gene068917 | -0.808983 | 2.37E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene068917 | -0.829003 | 6.56E-55 | -1.69E-46 |
| MS.gene055942 | MS.gene068917 | 0.847284 | 1.27E-59 | -1.69E-46 |
| MS.gene056224 | MS.gene068917 | 0.841962 | 3.46E-58 | -1.69E-46 |
| MS.gene056310 | MS.gene068917 | 0.813387 | 2.63E-51 | -1.69E-46 |
| MS.gene056311 | MS.gene068917 | 0.853904 | 1.75E-61 | -1.69E-46 |
| MS.gene056313 | MS.gene068917 | 0.811752 | 5.98E-51 | -1.69E-46 |
| MS.gene056504 | MS.gene068917 | -0.847978 | 8.21E-60 | -1.69E-46 |
| MS.gene056549 | MS.gene068917 | -0.81494 | 1.19E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene068917 | -0.839663 | 1.38E-57 | -1.69E-46 |
| MS.gene056692 | MS.gene068917 | -0.801903 | 7.23E-49 | -1.69E-46 |
| MS.gene056856 | MS.gene068917 | 0.838495 | 2.78E-57 | -1.69E-46 |
| MS.gene056857 | MS.gene068917 | 0.807745 | 4.35E-50 | -1.69E-46 |
| MS.gene057014 | MS.gene068917 | 0.82496 | 6.08E-54 | -1.69E-46 |
| MS.gene057549 | MS.gene068917 | 0.830683 | 2.56E-55 | -1.69E-46 |
| MS.gene058068 | MS.gene068917 | 0.853933 | 1.72E-61 | -1.69E-46 |
| MS.gene058093 | MS.gene068917 | 0.834755 | 2.50E-56 | -1.69E-46 |
| MS.gene058099 | MS.gene068917 | 0.872941 | 2.16E-67 | -1.69E-46 |
| MS.gene058108 | MS.gene068917 | 0.827105 | 1.88E-54 | -1.69E-46 |
| MS.gene058109 | MS.gene068917 | 0.867618 | 1.20E-65 | -1.69E-46 |
| MS.gene058111 | MS.gene068917 | 0.862934 | 3.57E-64 | -1.69E-46 |
| MS.gene058117 | MS.gene068917 | 0.845443 | 4.05E-59 | -1.69E-46 |
| MS.gene058157 | MS.gene068917 | -0.801291 | 9.65E-49 | -1.69E-46 |
| MS.gene058171 | MS.gene068917 | 0.879688 | 1.02E-69 | -1.69E-46 |
| MS.gene058173 | MS.gene068917 | 0.871973 | 4.54E-67 | -1.69E-46 |
| MS.gene058175 | MS.gene068917 | 0.879063 | 1.69E-69 | -1.69E-46 |
| MS.gene058268 | MS.gene068917 | 0.832461 | 9.33E-56 | -1.69E-46 |
| MS.gene058269 | MS.gene068917 | 0.840968 | 6.31E-58 | -1.69E-46 |
| MS.gene058334 | MS.gene068917 | 0.816693 | 4.85E-52 | -1.69E-46 |
| MS.gene05837 | MS.gene068917 | -0.802839 | 4.64E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene068917 | -0.834158 | 3.52E-56 | -1.69E-46 |
| MS.gene058493 | MS.gene068917 | 0.858978 | 5.68E-63 | -1.69E-46 |
| MS.gene058494 | MS.gene068917 | 0.838707 | 2.45E-57 | -1.69E-46 |
| MS.gene058496 | MS.gene068917 | 0.806348 | 8.59E-50 | -1.69E-46 |
| MS.gene058603 | MS.gene068917 | 0.834015 | 3.83E-56 | -1.69E-46 |
| MS.gene058628 | MS.gene068917 | 0.815308 | 9.88E-52 | -1.69E-46 |
| MS.gene058629 | MS.gene068917 | 0.801929 | 7.14E-49 | -1.69E-46 |
| MS.gene058630 | MS.gene068917 | 0.808271 | 3.36E-50 | -1.69E-46 |
| MS.gene058773 | MS.gene068917 | -0.801152 | 1.03E-48 | -1.69E-46 |
| MS.gene058840 | MS.gene068917 | 0.828309 | 9.66E-55 | -1.69E-46 |
| MS.gene059022 | MS.gene068917 | -0.851808 | 6.97E-61 | -1.69E-46 |
| MS.gene059037 | MS.gene068917 | 0.834305 | 3.24E-56 | -1.69E-46 |
| MS.gene059038 | MS.gene068917 | 0.817701 | 2.88E-52 | -1.69E-46 |
| MS.gene059045 | MS.gene068917 | 0.852581 | 4.20E-61 | -1.69E-46 |
| MS.gene05913 | MS.gene068917 | -0.802397 | 5.72E-49 | -1.69E-46 |
| MS.gene059223 | MS.gene068917 | 0.812349 | 4.43E-51 | -1.69E-46 |
| MS.gene059367 | MS.gene068917 | -0.813236 | 2.83E-51 | -1.69E-46 |
| MS.gene059677 | MS.gene068917 | -0.821261 | 4.44E-53 | -1.69E-46 |
| MS.gene059690 | MS.gene068917 | 0.853769 | 1.92E-61 | -1.69E-46 |
| MS.gene059691 | MS.gene068917 | 0.827221 | 1.76E-54 | -1.69E-46 |
| MS.gene059694 | MS.gene068917 | 0.851132 | 1.08E-60 | -1.69E-46 |
| MS.gene059697 | MS.gene068917 | 0.847053 | 1.47E-59 | -1.69E-46 |
| MS.gene059703 | MS.gene068917 | 0.81315 | 2.96E-51 | -1.69E-46 |
| MS.gene059718 | MS.gene068917 | -0.803525 | 3.34E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene068917 | -0.855201 | 7.39E-62 | -1.69E-46 |
| MS.gene059916 | MS.gene068917 | 0.829476 | 5.04E-55 | -1.69E-46 |
| MS.gene059955 | MS.gene068917 | 0.801603 | 8.33E-49 | -1.69E-46 |
| MS.gene060405 | MS.gene068917 | 0.808789 | 2.61E-50 | -1.69E-46 |
| MS.gene060482 | MS.gene068917 | -0.800008 | 1.76E-48 | -1.69E-46 |
| MS.gene060593 | MS.gene068917 | 0.812915 | 3.33E-51 | -1.69E-46 |
| MS.gene060595 | MS.gene068917 | 0.820923 | 5.31E-53 | -1.69E-46 |
| MS.gene060703 | MS.gene068917 | -0.817055 | 4.02E-52 | -1.69E-46 |
| MS.gene06074 | MS.gene068917 | 0.804571 | 2.03E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene068917 | -0.824163 | 9.37E-54 | -1.69E-46 |
| MS.gene060778 | MS.gene068917 | -0.829331 | 5.46E-55 | -1.69E-46 |
| MS.gene06077 | MS.gene068917 | -0.840526 | 8.25E-58 | -1.69E-46 |
| MS.gene060982 | MS.gene068917 | -0.831337 | 1.77E-55 | -1.69E-46 |
| MS.gene061044 | MS.gene068917 | 0.807875 | 4.08E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068917.t1 | MTR_2g045080 | 90.643 | 171 | 6 | 1 | 1 | 161 | 1 | 171 | 4.75e-112 | 315 |
| MS.gene068917.t1 | MTR_2g045050 | 76.398 | 161 | 38 | 0 | 1 | 161 | 1 | 161 | 2.61e-92 | 265 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068917.t1 | AT1G48320 | 63.462 | 156 | 55 | 1 | 6 | 161 | 3 | 156 | 1.41e-69 | 207 |
| MS.gene068917.t1 | AT5G48950 | 54.667 | 150 | 65 | 2 | 11 | 157 | 3 | 152 | 8.71e-58 | 177 |
| MS.gene068917.t1 | AT5G48950 | 60.185 | 108 | 41 | 1 | 11 | 116 | 3 | 110 | 4.26e-43 | 139 |
Find 21 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTTACCCCTTCATACATT+TGG | 0.265244 | 2.1:-45899450 | MS.gene068917:CDS |
| AGCATTCACCTGAATGGTTT+TGG | 0.290561 | 2.1:+45898727 | None:intergenic |
| GTGTCATCAAACAAAGTTTC+TGG | 0.297801 | 2.1:-45899411 | MS.gene068917:CDS |
| TGCATACTTCTTTAGCATAT+TGG | 0.303673 | 2.1:+45898081 | None:intergenic |
| AAAACCAAAAGCTGCTGATT+TGG | 0.309085 | 2.1:-45899472 | MS.gene068917:CDS |
| CCTCCATGAAGCACACTAAA+AGG | 0.309265 | 2.1:+45898905 | None:intergenic |
| AAGTGTTGCCAAAACCATTC+AGG | 0.313827 | 2.1:-45898735 | MS.gene068917:intron |
| AAATCCAAATCAGCAGCTTT+TGG | 0.333199 | 2.1:+45899468 | None:intergenic |
| ATTTACCCCTTCATACATTT+GGG | 0.334094 | 2.1:-45899449 | MS.gene068917:CDS |
| TGTGGGTATAAAAGAGTTGC+TGG | 0.445165 | 2.1:-45898830 | MS.gene068917:CDS |
| AAGAGGAGCATTCACCTGAA+TGG | 0.482948 | 2.1:+45898721 | None:intergenic |
| GCTGAAGCTCTTGCAAGTAT+TGG | 0.487992 | 2.1:-45898866 | MS.gene068917:CDS |
| AGGTGTGGGATGTGAAAATC+TGG | 0.507075 | 2.1:-45898204 | MS.gene068917:CDS |
| ACTCAAACCCAAATGTATGA+AGG | 0.525757 | 2.1:+45899442 | None:intergenic |
| TTGGAGCACATGTTGCTTGT+GGG | 0.528993 | 2.1:-45898847 | MS.gene068917:CDS |
| CTCAAACCCAAATGTATGAA+GGG | 0.530132 | 2.1:+45899443 | None:intergenic |
| CATTTGAAATCAGCAATGCT+TGG | 0.536764 | 2.1:-45898788 | MS.gene068917:CDS |
| AGTCACTGAAAAGTGTTGCC+AGG | 0.553880 | 2.1:-45899379 | MS.gene068917:intron |
| GGAGGACCATCAATCATCAT+CGG | 0.605735 | 2.1:-45899496 | MS.gene068917:CDS |
| ATTGGAGCACATGTTGCTTG+TGG | 0.616187 | 2.1:-45898848 | MS.gene068917:CDS |
| TCAAACCCAAATGTATGAAG+GGG | 0.634737 | 2.1:+45899444 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAGAGAATTTATATAAA+TGG | + | chr2.1:45899001-45899020 | None:intergenic | 10.0% |
| !! | ATTTATATAAATTCTCTTAT+TGG | - | chr2.1:45899000-45899019 | MS.gene068917:intron | 10.0% |
| !!! | ATATCATCTCATATTTATTT+TGG | - | chr2.1:45899091-45899110 | MS.gene068917:intron | 15.0% |
| !! | ATATATGAACAAGAAAAAGT+AGG | - | chr2.1:45898609-45898628 | MS.gene068917:intron | 20.0% |
| !!! | ACTTTGAGAAAAATATAAAG+AGG | + | chr2.1:45898869-45898888 | None:intergenic | 20.0% |
| !!! | TTTACTTGCTTACATTTTTT+GGG | - | chr2.1:45899290-45899309 | MS.gene068917:intron | 20.0% |
| !!! | TTTTACTTGCTTACATTTTT+TGG | - | chr2.1:45899289-45899308 | MS.gene068917:intron | 20.0% |
| ! | AATTAGGAGTGATTTGATAT+TGG | - | chr2.1:45898633-45898652 | MS.gene068917:intron | 25.0% |
| ! | ACAAGAAAAAGTAGGTAATT+AGG | - | chr2.1:45898617-45898636 | MS.gene068917:intron | 25.0% |
| ! | ACGAAAAACTATGAAAACAA+AGG | + | chr2.1:45898223-45898242 | None:intergenic | 25.0% |
| ! | ATCATGATTGGTATAATCAT+TGG | + | chr2.1:45899158-45899177 | None:intergenic | 25.0% |
| ! | CACATAAAGATAAATCGTTT+GGG | + | chr2.1:45898931-45898950 | None:intergenic | 25.0% |
| ! | CGAAAAACTATGAAAACAAA+GGG | + | chr2.1:45898222-45898241 | None:intergenic | 25.0% |
| ! | CGGATTCTGATTTAAATAAT+TGG | + | chr2.1:45898896-45898915 | None:intergenic | 25.0% |
| ! | GACAATGCATAAAATATGTA+AGG | - | chr2.1:45898358-45898377 | MS.gene068917:intron | 25.0% |
| ! | GCTATAAAGTAAGTAAAACA+TGG | - | chr2.1:45899132-45899151 | MS.gene068917:intron | 25.0% |
| ! | TCACATAAAGATAAATCGTT+TGG | + | chr2.1:45898932-45898951 | None:intergenic | 25.0% |
| ! | TTGAGTATGTTACATAGTTA+TGG | - | chr2.1:45898553-45898572 | MS.gene068917:intron | 25.0% |
| !! | AAATTCTCTTATTGGTGATT+TGG | - | chr2.1:45899008-45899027 | MS.gene068917:intron | 25.0% |
| !! | TGTTTTACTTACTTTATAGC+CGG | + | chr2.1:45899132-45899151 | None:intergenic | 25.0% |
| !!! | CTCATATTTATTTTGGTACT+TGG | - | chr2.1:45899098-45899117 | MS.gene068917:intron | 25.0% |
| !!! | TTACTTGCTTACATTTTTTG+GGG | - | chr2.1:45899291-45899310 | MS.gene068917:intron | 25.0% |
| AATTAAGCACATATACTCCT+TGG | - | chr2.1:45898287-45898306 | MS.gene068917:intron | 30.0% | |
| ATTTACCCCTTCATACATTT+GGG | - | chr2.1:45898121-45898140 | MS.gene068917:CDS | 30.0% | |
| TGCATAAAATATGTAAGGTC+CGG | - | chr2.1:45898363-45898382 | MS.gene068917:intron | 30.0% | |
| TGCATACTTCTTTAGCATAT+TGG | + | chr2.1:45899492-45899511 | None:intergenic | 30.0% | |
| TTGAAGACAATGTCACTAAT+TGG | - | chr2.1:45898966-45898985 | MS.gene068917:intron | 30.0% | |
| !!! | GTTCTGTTTTTTGAGTTTGA+AGG | + | chr2.1:45899401-45899420 | None:intergenic | 30.0% |
| !!! | TTTTGGGGTTAGAATTGTTT+GGG | - | chr2.1:45899306-45899325 | MS.gene068917:intron | 30.0% |
| !!! | TTTTTGGGGTTAGAATTGTT+TGG | - | chr2.1:45899305-45899324 | MS.gene068917:intron | 30.0% |
| AAAGAGACATGATCATGTGT+TGG | - | chr2.1:45898409-45898428 | MS.gene068917:intron | 35.0% | |
| ACAATGTCACTAATTGGCTA+TGG | - | chr2.1:45898972-45898991 | MS.gene068917:intron | 35.0% | |
| ACATGATCATGTCTAATCCA+AGG | + | chr2.1:45898307-45898326 | None:intergenic | 35.0% | |
| ACTCAAACCCAAATGTATGA+AGG | + | chr2.1:45898131-45898150 | None:intergenic | 35.0% | |
| CATAAAATATGTAAGGTCCG+GGG | - | chr2.1:45898365-45898384 | MS.gene068917:intron | 35.0% | |
| CTCAAACCCAAATGTATGAA+GGG | + | chr2.1:45898130-45898149 | None:intergenic | 35.0% | |
| GATTTACCCCTTCATACATT+TGG | - | chr2.1:45898120-45898139 | MS.gene068917:CDS | 35.0% | |
| GCATAAAATATGTAAGGTCC+GGG | - | chr2.1:45898364-45898383 | MS.gene068917:intron | 35.0% | |
| GTGTCATCAAACAAAGTTTC+TGG | - | chr2.1:45898159-45898178 | MS.gene068917:CDS | 35.0% | |
| TCAAACCCAAATGTATGAAG+GGG | + | chr2.1:45898129-45898148 | None:intergenic | 35.0% | |
| ! | AAAACCAAAAGCTGCTGATT+TGG | - | chr2.1:45898098-45898117 | MS.gene068917:CDS | 35.0% |
| ! | AAATCCAAATCAGCAGCTTT+TGG | + | chr2.1:45898105-45898124 | None:intergenic | 35.0% |
| ! | ACTTTTCAGTGACTTGAAGA+TGG | + | chr2.1:45898185-45898204 | None:intergenic | 35.0% |
| ! | ATGATCATGTCTCTTTTTGG+TGG | + | chr2.1:45898405-45898424 | None:intergenic | 35.0% |
| ! | CACATGATCATGTCTCTTTT+TGG | + | chr2.1:45898408-45898427 | None:intergenic | 35.0% |
| ! | CATTTGAAATCAGCAATGCT+TGG | - | chr2.1:45898782-45898801 | MS.gene068917:CDS | 35.0% |
| !! | TCTTTTGCATAATCTGGAAC+AGG | + | chr2.1:45899464-45899483 | None:intergenic | 35.0% |
| !!! | ATGGTTTTGGCAACACTTAA+AGG | + | chr2.1:45898833-45898852 | None:intergenic | 35.0% |
| !!! | TGGTTTTGGCAACACTTAAA+GGG | + | chr2.1:45898832-45898851 | None:intergenic | 35.0% |
| ACACGAACACCAACAAAACA+CGG | + | chr2.1:45898533-45898552 | None:intergenic | 40.0% | |
| AGTTGAGCTCGAATCATGAT+TGG | + | chr2.1:45899170-45899189 | None:intergenic | 40.0% | |
| CGTTTGGGAAAACTTGAGTA+CGG | + | chr2.1:45898916-45898935 | None:intergenic | 40.0% | |
| GATATGTGTCAGTATCACGT+CGG | + | chr2.1:45898454-45898473 | None:intergenic | 40.0% | |
| TGAAAACAAAGGGTTTGACC+TGG | + | chr2.1:45898212-45898231 | None:intergenic | 40.0% | |
| TGTGGGTATAAAAGAGTTGC+TGG | - | chr2.1:45898740-45898759 | MS.gene068917:CDS | 40.0% | |
| TTACACTTTGATCCTGTTGC+AGG | - | chr2.1:45899346-45899365 | MS.gene068917:intron | 40.0% | |
| ! | AAGTGTTGCCAAAACCATTC+AGG | - | chr2.1:45898835-45898854 | MS.gene068917:CDS | 40.0% |
| ! | AGCATTCACCTGAATGGTTT+TGG | + | chr2.1:45898846-45898865 | None:intergenic | 40.0% |
| ! | CTTTTAGTGTGCTTCATGGA+GGG | - | chr2.1:45898666-45898685 | MS.gene068917:intron | 40.0% |
| ! | GCAGCTTCTTTTGCATAATC+TGG | + | chr2.1:45899470-45899489 | None:intergenic | 40.0% |
| ! | GTTTTGCCGATGATGATTGA+TGG | + | chr2.1:45898083-45898102 | None:intergenic | 40.0% |
| ! | TGAGCTTAGTTCAGTTGGTA+TGG | - | chr2.1:45898336-45898355 | MS.gene068917:intron | 40.0% |
| ! | TGTCTATGTCCGTGTTTTGT+TGG | - | chr2.1:45898521-45898540 | MS.gene068917:intron | 40.0% |
| ! | TTTTAGTGTGCTTCATGGAG+GGG | - | chr2.1:45898667-45898686 | MS.gene068917:intron | 40.0% |
| !! | GGTTTTGGCAACACTTAAAG+GGG | + | chr2.1:45898831-45898850 | None:intergenic | 40.0% |
| AGGTGTGGGATGTGAAAATC+TGG | - | chr2.1:45899366-45899385 | MS.gene068917:intron | 45.0% | |
| CCTCCATGAAGCACACTAAA+AGG | + | chr2.1:45898668-45898687 | None:intergenic | 45.0% | |
| GCTGAAGCTCTTGCAAGTAT+TGG | - | chr2.1:45898704-45898723 | MS.gene068917:intron | 45.0% | |
| GGAGGACCATCAATCATCAT+CGG | - | chr2.1:45898074-45898093 | MS.gene068917:CDS | 45.0% | |
| TGGGGTTAGAATTGTTTGGG+CGG | - | chr2.1:45899309-45899328 | MS.gene068917:intron | 45.0% | |
| TTTGATCCTGTTGCAGGTGT+GGG | - | chr2.1:45899352-45899371 | MS.gene068917:intron | 45.0% | |
| ! | ATTGGAGCACATGTTGCTTG+TGG | - | chr2.1:45898722-45898741 | MS.gene068917:intron | 45.0% |
| ! | CAGCCTTTTAGTGTGCTTCA+TGG | - | chr2.1:45898662-45898681 | MS.gene068917:intron | 45.0% |
| ! | CCTTTTAGTGTGCTTCATGG+AGG | - | chr2.1:45898665-45898684 | MS.gene068917:intron | 45.0% |
| ! | TTGGAGCACATGTTGCTTGT+GGG | - | chr2.1:45898723-45898742 | MS.gene068917:intron | 45.0% |
| !! | AAGAGGAGCATTCACCTGAA+TGG | + | chr2.1:45898852-45898871 | None:intergenic | 45.0% |
| !! | AGTCACTGAAAAGTGTTGCC+AGG | - | chr2.1:45898191-45898210 | MS.gene068917:CDS | 45.0% |
| CCAACTGAACTAAGCTCACG+AGG | + | chr2.1:45898334-45898353 | None:intergenic | 50.0% | |
| CCTCGTGAGCTTAGTTCAGT+TGG | - | chr2.1:45898331-45898350 | MS.gene068917:intron | 50.0% | |
| CTTTGATCCTGTTGCAGGTG+TGG | - | chr2.1:45899351-45899370 | MS.gene068917:intron | 50.0% | |
| ! | TTGGTACTTGGCTCGATGTC+CGG | - | chr2.1:45899110-45899129 | MS.gene068917:intron | 50.0% |
| !!! | GTCTCTTTTTGGTGGTGACC+AGG | + | chr2.1:45898397-45898416 | None:intergenic | 50.0% |
| TCACATCCCACACCTGCAAC+AGG | + | chr2.1:45899361-45899380 | None:intergenic | 55.0% | |
| TAAGGTCCGGGGTTCGAACC+TGG | - | chr2.1:45898376-45898395 | MS.gene068917:intron | 60.0% | |
| TGGTGACCAGGTTCGAACCC+CGG | + | chr2.1:45898385-45898404 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 45898072 | 45899520 | 45898072 | ID=MS.gene068917 |
| chr2.1 | mRNA | 45898072 | 45899520 | 45898072 | ID=MS.gene068917.t1;Parent=MS.gene068917 |
| chr2.1 | exon | 45899380 | 45899520 | 45899380 | ID=MS.gene068917.t1.exon1;Parent=MS.gene068917.t1 |
| chr2.1 | CDS | 45899380 | 45899520 | 45899380 | ID=cds.MS.gene068917.t1;Parent=MS.gene068917.t1 |
| chr2.1 | exon | 45898736 | 45898927 | 45898736 | ID=MS.gene068917.t1.exon2;Parent=MS.gene068917.t1 |
| chr2.1 | CDS | 45898736 | 45898927 | 45898736 | ID=cds.MS.gene068917.t1;Parent=MS.gene068917.t1 |
| chr2.1 | exon | 45898072 | 45898224 | 45898072 | ID=MS.gene068917.t1.exon3;Parent=MS.gene068917.t1 |
| chr2.1 | CDS | 45898072 | 45898224 | 45898072 | ID=cds.MS.gene068917.t1;Parent=MS.gene068917.t1 |
| Gene Sequence |
| Protein sequence |
