Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27768.t1 | XP_024626159.1 | 98.8 | 342 | 4 | 0 | 1 | 342 | 58 | 399 | 6.90E-191 | 676.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27768.t1 | Q0DWA9 | 74.2 | 341 | 86 | 1 | 1 | 341 | 199 | 537 | 2.5e-149 | 529.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27768.t1 | A0A072U0X3 | 98.8 | 342 | 4 | 0 | 1 | 342 | 58 | 399 | 5.0e-191 | 676.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene27768 | -0.886354 | 3.68E-72 | -1.69E-46 |
| MS.gene049173 | MS.gene27768 | -0.821474 | 3.96E-53 | -1.69E-46 |
| MS.gene049217 | MS.gene27768 | -0.884255 | 2.24E-71 | -1.69E-46 |
| MS.gene049222 | MS.gene27768 | -0.876213 | 1.67E-68 | -1.69E-46 |
| MS.gene049232 | MS.gene27768 | -0.832782 | 7.77E-56 | -1.69E-46 |
| MS.gene049285 | MS.gene27768 | -0.882699 | 8.37E-71 | -1.69E-46 |
| MS.gene049320 | MS.gene27768 | -0.887546 | 1.30E-72 | -1.69E-46 |
| MS.gene04939 | MS.gene27768 | -0.808679 | 2.75E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene27768 | -0.802536 | 5.35E-49 | -1.69E-46 |
| MS.gene049627 | MS.gene27768 | -0.836611 | 8.46E-57 | -1.69E-46 |
| MS.gene049633 | MS.gene27768 | -0.82865 | 7.99E-55 | -1.69E-46 |
| MS.gene05010 | MS.gene27768 | -0.857024 | 2.16E-62 | -1.69E-46 |
| MS.gene050163 | MS.gene27768 | -0.910124 | 2.66E-82 | -1.69E-46 |
| MS.gene050165 | MS.gene27768 | -0.915819 | 3.74E-85 | -1.69E-46 |
| MS.gene050170 | MS.gene27768 | -0.806658 | 7.39E-50 | -1.69E-46 |
| MS.gene050216 | MS.gene27768 | -0.807546 | 4.79E-50 | -1.69E-46 |
| MS.gene050323 | MS.gene27768 | -0.808876 | 2.50E-50 | -1.69E-46 |
| MS.gene050333 | MS.gene27768 | -0.861937 | 7.22E-64 | -1.69E-46 |
| MS.gene050353 | MS.gene27768 | 0.808371 | 3.20E-50 | -1.69E-46 |
| MS.gene050381 | MS.gene27768 | 0.809251 | 2.08E-50 | -1.69E-46 |
| MS.gene050444 | MS.gene27768 | -0.805873 | 1.08E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene27768 | -0.911383 | 6.47E-83 | -1.69E-46 |
| MS.gene050518 | MS.gene27768 | -0.886817 | 2.46E-72 | -1.69E-46 |
| MS.gene050577 | MS.gene27768 | -0.851426 | 8.95E-61 | -1.69E-46 |
| MS.gene050612 | MS.gene27768 | -0.89444 | 2.46E-75 | -1.69E-46 |
| MS.gene050647 | MS.gene27768 | 0.817091 | 3.95E-52 | -1.69E-46 |
| MS.gene050675 | MS.gene27768 | -0.852614 | 4.11E-61 | -1.69E-46 |
| MS.gene050699 | MS.gene27768 | -0.86397 | 1.70E-64 | -1.69E-46 |
| MS.gene050747 | MS.gene27768 | -0.806807 | 6.87E-50 | -1.69E-46 |
| MS.gene050772 | MS.gene27768 | -0.835589 | 1.54E-56 | -1.69E-46 |
| MS.gene05080 | MS.gene27768 | -0.810053 | 1.40E-50 | -1.69E-46 |
| MS.gene050832 | MS.gene27768 | 0.81216 | 4.87E-51 | -1.69E-46 |
| MS.gene050833 | MS.gene27768 | 0.813304 | 2.74E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene27768 | -0.820564 | 6.42E-53 | -1.69E-46 |
| MS.gene050871 | MS.gene27768 | -0.819844 | 9.38E-53 | -1.69E-46 |
| MS.gene050876 | MS.gene27768 | -0.842027 | 3.32E-58 | -1.69E-46 |
| MS.gene05087 | MS.gene27768 | -0.825581 | 4.34E-54 | -1.69E-46 |
| MS.gene050883 | MS.gene27768 | 0.808091 | 3.67E-50 | -1.69E-46 |
| MS.gene050904 | MS.gene27768 | -0.851213 | 1.03E-60 | -1.69E-46 |
| MS.gene050950 | MS.gene27768 | -0.809274 | 2.05E-50 | -1.69E-46 |
| MS.gene050986 | MS.gene27768 | -0.873781 | 1.13E-67 | -1.69E-46 |
| MS.gene05100 | MS.gene27768 | -0.857531 | 1.53E-62 | -1.69E-46 |
| MS.gene051127 | MS.gene27768 | 0.811489 | 6.82E-51 | -1.69E-46 |
| MS.gene051138 | MS.gene27768 | 0.804367 | 2.23E-49 | -1.69E-46 |
| MS.gene051317 | MS.gene27768 | -0.861857 | 7.64E-64 | -1.69E-46 |
| MS.gene051364 | MS.gene27768 | 0.809963 | 1.46E-50 | -1.69E-46 |
| MS.gene051366 | MS.gene27768 | 0.80613 | 9.55E-50 | -1.69E-46 |
| MS.gene051551 | MS.gene27768 | -0.85072 | 1.41E-60 | -1.69E-46 |
| MS.gene051694 | MS.gene27768 | -0.810513 | 1.11E-50 | -1.69E-46 |
| MS.gene051810 | MS.gene27768 | -0.870664 | 1.23E-66 | -1.69E-46 |
| MS.gene051858 | MS.gene27768 | -0.8217 | 3.51E-53 | -1.69E-46 |
| MS.gene051949 | MS.gene27768 | -0.800461 | 1.43E-48 | -1.69E-46 |
| MS.gene052164 | MS.gene27768 | -0.847621 | 1.03E-59 | -1.69E-46 |
| MS.gene052271 | MS.gene27768 | -0.802737 | 4.87E-49 | -1.69E-46 |
| MS.gene052482 | MS.gene27768 | -0.857611 | 1.45E-62 | -1.69E-46 |
| MS.gene052486 | MS.gene27768 | -0.863095 | 3.18E-64 | -1.69E-46 |
| MS.gene052503 | MS.gene27768 | -0.815171 | 1.06E-51 | -1.69E-46 |
| MS.gene052605 | MS.gene27768 | -0.835568 | 1.56E-56 | -1.69E-46 |
| MS.gene052615 | MS.gene27768 | -0.800242 | 1.58E-48 | -1.69E-46 |
| MS.gene052670 | MS.gene27768 | -0.800017 | 1.76E-48 | -1.69E-46 |
| MS.gene052823 | MS.gene27768 | -0.809499 | 1.84E-50 | -1.69E-46 |
| MS.gene052825 | MS.gene27768 | -0.807801 | 4.23E-50 | -1.69E-46 |
| MS.gene052966 | MS.gene27768 | -0.810087 | 1.37E-50 | -1.69E-46 |
| MS.gene053203 | MS.gene27768 | -0.826589 | 2.50E-54 | -1.69E-46 |
| MS.gene053213 | MS.gene27768 | -0.851683 | 7.56E-61 | -1.69E-46 |
| MS.gene053284 | MS.gene27768 | -0.816797 | 4.60E-52 | -1.69E-46 |
| MS.gene053285 | MS.gene27768 | -0.802836 | 4.64E-49 | -1.69E-46 |
| MS.gene053286 | MS.gene27768 | -0.851717 | 7.40E-61 | -1.69E-46 |
| MS.gene053420 | MS.gene27768 | 0.831505 | 1.61E-55 | -1.69E-46 |
| MS.gene053480 | MS.gene27768 | -0.804223 | 2.39E-49 | -1.69E-46 |
| MS.gene053574 | MS.gene27768 | -0.812973 | 3.24E-51 | -1.69E-46 |
| MS.gene053632 | MS.gene27768 | -0.850279 | 1.88E-60 | -1.69E-46 |
| MS.gene054595 | MS.gene27768 | -0.826198 | 3.09E-54 | -1.69E-46 |
| MS.gene054600 | MS.gene27768 | -0.824924 | 6.20E-54 | -1.69E-46 |
| MS.gene054616 | MS.gene27768 | 0.806195 | 9.26E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene27768 | -0.876568 | 1.26E-68 | -1.69E-46 |
| MS.gene054706 | MS.gene27768 | 0.80438 | 2.22E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene27768 | -0.871694 | 5.62E-67 | -1.69E-46 |
| MS.gene054954 | MS.gene27768 | -0.882423 | 1.05E-70 | -1.69E-46 |
| MS.gene055154 | MS.gene27768 | 0.825701 | 4.06E-54 | -1.69E-46 |
| MS.gene055362 | MS.gene27768 | -0.879375 | 1.31E-69 | -1.69E-46 |
| MS.gene055499 | MS.gene27768 | -0.803281 | 3.76E-49 | -1.69E-46 |
| MS.gene055502 | MS.gene27768 | -0.887761 | 1.07E-72 | -1.69E-46 |
| MS.gene055577 | MS.gene27768 | -0.863356 | 2.64E-64 | -1.69E-46 |
| MS.gene055634 | MS.gene27768 | -0.814901 | 1.22E-51 | -1.69E-46 |
| MS.gene055638 | MS.gene27768 | -0.810756 | 9.84E-51 | -1.69E-46 |
| MS.gene055748 | MS.gene27768 | -0.853245 | 2.72E-61 | -1.69E-46 |
| MS.gene055750 | MS.gene27768 | -0.823826 | 1.12E-53 | -1.69E-46 |
| MS.gene055751 | MS.gene27768 | -0.856161 | 3.88E-62 | -1.69E-46 |
| MS.gene055776 | MS.gene27768 | -0.829267 | 5.66E-55 | -1.69E-46 |
| MS.gene05589 | MS.gene27768 | -0.846526 | 2.06E-59 | -1.69E-46 |
| MS.gene055941 | MS.gene27768 | -0.806799 | 6.90E-50 | -1.69E-46 |
| MS.gene055956 | MS.gene27768 | 0.817602 | 3.03E-52 | -1.69E-46 |
| MS.gene056083 | MS.gene27768 | -0.809651 | 1.70E-50 | -1.69E-46 |
| MS.gene056374 | MS.gene27768 | -0.837031 | 6.61E-57 | -1.69E-46 |
| MS.gene056504 | MS.gene27768 | -0.86084 | 1.56E-63 | -1.69E-46 |
| MS.gene056510 | MS.gene27768 | -0.848462 | 6.04E-60 | -1.69E-46 |
| MS.gene056549 | MS.gene27768 | -0.805872 | 1.08E-49 | -1.69E-46 |
| MS.gene056550 | MS.gene27768 | 0.860826 | 1.58E-63 | -1.69E-46 |
| MS.gene056657 | MS.gene27768 | -0.877711 | 5.05E-69 | -1.69E-46 |
| MS.gene056692 | MS.gene27768 | -0.850481 | 1.65E-60 | -1.69E-46 |
| MS.gene056898 | MS.gene27768 | -0.811448 | 6.97E-51 | -1.69E-46 |
| MS.gene057129 | MS.gene27768 | -0.806638 | 7.46E-50 | -1.69E-46 |
| MS.gene057416 | MS.gene27768 | -0.827795 | 1.28E-54 | -1.69E-46 |
| MS.gene057658 | MS.gene27768 | -0.805033 | 1.62E-49 | -1.69E-46 |
| MS.gene057831 | MS.gene27768 | -0.841055 | 5.99E-58 | -1.69E-46 |
| MS.gene058171 | MS.gene27768 | 0.802288 | 6.02E-49 | -1.69E-46 |
| MS.gene058334 | MS.gene27768 | 0.81836 | 2.04E-52 | -1.69E-46 |
| MS.gene058335 | MS.gene27768 | -0.813658 | 2.29E-51 | -1.69E-46 |
| MS.gene05837 | MS.gene27768 | -0.827147 | 1.84E-54 | -1.69E-46 |
| MS.gene058419 | MS.gene27768 | -0.889186 | 3.04E-73 | -1.69E-46 |
| MS.gene058544 | MS.gene27768 | -0.854718 | 1.02E-61 | -1.69E-46 |
| MS.gene058719 | MS.gene27768 | -0.816134 | 6.47E-52 | -1.69E-46 |
| MS.gene058723 | MS.gene27768 | -0.830634 | 2.63E-55 | -1.69E-46 |
| MS.gene058773 | MS.gene27768 | -0.876806 | 1.04E-68 | -1.69E-46 |
| MS.gene058838 | MS.gene27768 | -0.814627 | 1.40E-51 | -1.69E-46 |
| MS.gene059022 | MS.gene27768 | -0.894517 | 2.29E-75 | -1.69E-46 |
| MS.gene059023 | MS.gene27768 | -0.855063 | 8.11E-62 | -1.69E-46 |
| MS.gene059029 | MS.gene27768 | -0.83424 | 3.36E-56 | -1.69E-46 |
| MS.gene059079 | MS.gene27768 | -0.805993 | 1.02E-49 | -1.69E-46 |
| MS.gene059102 | MS.gene27768 | 0.819608 | 1.06E-52 | -1.69E-46 |
| MS.gene05912 | MS.gene27768 | -0.835947 | 1.25E-56 | -1.69E-46 |
| MS.gene05914 | MS.gene27768 | -0.81522 | 1.03E-51 | -1.69E-46 |
| MS.gene059479 | MS.gene27768 | 0.834706 | 2.57E-56 | -1.69E-46 |
| MS.gene059677 | MS.gene27768 | -0.909336 | 6.37E-82 | -1.69E-46 |
| MS.gene059718 | MS.gene27768 | -0.865536 | 5.50E-65 | -1.69E-46 |
| MS.gene059756 | MS.gene27768 | -0.845537 | 3.82E-59 | -1.69E-46 |
| MS.gene059801 | MS.gene27768 | -0.812103 | 5.02E-51 | -1.69E-46 |
| MS.gene059865 | MS.gene27768 | -0.867058 | 1.81E-65 | -1.69E-46 |
| MS.gene059902 | MS.gene27768 | -0.818496 | 1.90E-52 | -1.69E-46 |
| MS.gene060337 | MS.gene27768 | 0.830145 | 3.46E-55 | -1.69E-46 |
| MS.gene060341 | MS.gene27768 | -0.802302 | 5.98E-49 | -1.69E-46 |
| MS.gene060595 | MS.gene27768 | 0.814886 | 1.23E-51 | -1.69E-46 |
| MS.gene060602 | MS.gene27768 | 0.800176 | 1.63E-48 | -1.69E-46 |
| MS.gene060703 | MS.gene27768 | -0.880099 | 7.26E-70 | -1.69E-46 |
| MS.gene060728 | MS.gene27768 | -0.810336 | 1.21E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene27768 | -0.875451 | 3.05E-68 | -1.69E-46 |
| MS.gene06077 | MS.gene27768 | -0.877262 | 7.24E-69 | -1.69E-46 |
| MS.gene060823 | MS.gene27768 | 0.847095 | 1.44E-59 | -1.69E-46 |
| MS.gene06092 | MS.gene27768 | -0.822872 | 1.88E-53 | -1.69E-46 |
| MS.gene060982 | MS.gene27768 | -0.856262 | 3.62E-62 | -1.69E-46 |
| MS.gene061134 | MS.gene27768 | -0.803231 | 3.85E-49 | -1.69E-46 |
| MS.gene061150 | MS.gene27768 | -0.846403 | 2.22E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27768.t1 | MTR_7g077800 | 98.830 | 342 | 4 | 0 | 1 | 342 | 196 | 537 | 0.0 | 691 |
| MS.gene27768.t1 | MTR_7g077800 | 98.830 | 342 | 4 | 0 | 1 | 342 | 58 | 399 | 0.0 | 689 |
| MS.gene27768.t1 | MTR_8g030680 | 82.164 | 342 | 60 | 1 | 1 | 342 | 200 | 540 | 0.0 | 579 |
| MS.gene27768.t1 | MTR_8g030680 | 82.164 | 342 | 60 | 1 | 1 | 342 | 114 | 454 | 0.0 | 579 |
| MS.gene27768.t1 | MTR_6g463340 | 73.054 | 334 | 88 | 1 | 1 | 334 | 94 | 425 | 0.0 | 511 |
| MS.gene27768.t1 | MTR_6g463340 | 73.054 | 334 | 88 | 1 | 1 | 334 | 202 | 533 | 2.68e-180 | 510 |
| MS.gene27768.t1 | MTR_7g077800 | 98.824 | 255 | 3 | 0 | 1 | 255 | 196 | 450 | 5.41e-180 | 506 |
| MS.gene27768.t1 | MTR_7g077800 | 94.624 | 186 | 10 | 0 | 1 | 186 | 196 | 381 | 1.14e-119 | 351 |
| MS.gene27768.t1 | MTR_7g405780 | 55.385 | 325 | 142 | 2 | 1 | 324 | 204 | 526 | 1.35e-119 | 355 |
| MS.gene27768.t1 | MTR_1g116953 | 51.703 | 323 | 153 | 2 | 1 | 322 | 189 | 509 | 1.68e-114 | 342 |
| MS.gene27768.t1 | MTR_7g405780 | 55.375 | 307 | 134 | 2 | 1 | 306 | 204 | 508 | 4.56e-113 | 338 |
| MS.gene27768.t1 | MTR_7g405780 | 55.294 | 255 | 111 | 2 | 1 | 254 | 204 | 456 | 5.57e-91 | 280 |
| MS.gene27768.t1 | MTR_7g405780 | 55.159 | 252 | 110 | 2 | 1 | 251 | 204 | 453 | 2.39e-89 | 275 |
| MS.gene27768.t1 | MTR_1g100980 | 30.769 | 221 | 112 | 6 | 146 | 328 | 145 | 362 | 7.24e-23 | 98.2 |
| MS.gene27768.t1 | MTR_3g109932 | 31.780 | 236 | 129 | 10 | 79 | 305 | 89 | 301 | 3.52e-21 | 93.2 |
| MS.gene27768.t1 | MTR_3g109932 | 31.780 | 236 | 129 | 10 | 79 | 305 | 89 | 301 | 6.26e-21 | 92.0 |
| MS.gene27768.t1 | MTR_1g008280 | 35.256 | 156 | 86 | 5 | 150 | 305 | 161 | 301 | 5.53e-19 | 87.0 |
| MS.gene27768.t1 | MTR_1g008280 | 32.847 | 137 | 78 | 4 | 150 | 286 | 161 | 283 | 7.47e-14 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27768.t1 | AT1G01650 | 75.740 | 338 | 82 | 0 | 1 | 338 | 201 | 538 | 0.0 | 531 |
| MS.gene27768.t1 | AT1G01650 | 75.740 | 338 | 82 | 0 | 1 | 338 | 59 | 396 | 0.0 | 530 |
| MS.gene27768.t1 | AT1G01650 | 75.740 | 338 | 82 | 0 | 1 | 338 | 59 | 396 | 0.0 | 530 |
| MS.gene27768.t1 | AT1G01650 | 75.740 | 338 | 82 | 0 | 1 | 338 | 59 | 396 | 0.0 | 530 |
| MS.gene27768.t1 | AT1G63690 | 75.602 | 332 | 78 | 2 | 1 | 332 | 202 | 530 | 0.0 | 519 |
| MS.gene27768.t1 | AT1G63690 | 75.301 | 332 | 79 | 2 | 1 | 332 | 202 | 530 | 0.0 | 518 |
| MS.gene27768.t1 | AT2G43070 | 53.235 | 340 | 156 | 2 | 1 | 340 | 203 | 539 | 2.95e-115 | 344 |
| MS.gene27768.t1 | AT2G43070 | 52.601 | 346 | 155 | 3 | 1 | 340 | 203 | 545 | 4.36e-115 | 344 |
| MS.gene27768.t1 | AT2G43070 | 53.235 | 340 | 156 | 2 | 1 | 340 | 262 | 598 | 1.22e-114 | 345 |
| MS.gene27768.t1 | AT2G43070 | 52.601 | 346 | 155 | 3 | 1 | 340 | 262 | 604 | 1.92e-114 | 344 |
| MS.gene27768.t1 | AT1G05820 | 48.000 | 325 | 166 | 2 | 1 | 324 | 59 | 381 | 3.89e-103 | 308 |
| MS.gene27768.t1 | AT1G05820 | 48.000 | 325 | 166 | 2 | 1 | 324 | 199 | 521 | 1.35e-101 | 309 |
| MS.gene27768.t1 | AT1G05820 | 48.366 | 306 | 155 | 2 | 1 | 305 | 199 | 502 | 1.36e-97 | 298 |
| MS.gene27768.t1 | AT1G05820 | 42.308 | 208 | 117 | 2 | 1 | 207 | 199 | 404 | 1.48e-48 | 169 |
| MS.gene27768.t1 | AT4G33410 | 26.724 | 348 | 178 | 15 | 43 | 338 | 47 | 369 | 1.34e-21 | 94.7 |
| MS.gene27768.t1 | AT2G03120 | 34.503 | 171 | 97 | 5 | 150 | 320 | 161 | 316 | 3.27e-21 | 93.2 |
Find 82 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACCTTGAGGTTTGGTATT+TGG | 0.124495 | 7.2:-28374414 | None:intergenic |
| CCATTCTCTGTGCTTCTTAC+TGG | 0.166120 | 7.2:+28373058 | MS.gene27768:CDS |
| CTTCTTTCCCAATGACAAAA+AGG | 0.201334 | 7.2:-28375709 | None:intergenic |
| GGTTACAGTGTCATCGGTTT+CGG | 0.211475 | 7.2:+28374824 | MS.gene27768:CDS |
| CATAGCATTCGCTGTGGTTT+GGG | 0.211873 | 7.2:+28374162 | MS.gene27768:CDS |
| CCTTCCTATATGACATCTTC+TGG | 0.226829 | 7.2:+28374574 | MS.gene27768:CDS |
| GTTTATGCTTTACAAACTAA+TGG | 0.249829 | 7.2:+28373454 | MS.gene27768:CDS |
| TGAGCAAGAGAAGCTATTAA+AGG | 0.254085 | 7.2:+28373110 | MS.gene27768:CDS |
| GTTACAGTGTCATCGGTTTC+GGG | 0.257862 | 7.2:+28374825 | MS.gene27768:CDS |
| ATACATAGCTTTGAATTTGA+TGG | 0.290429 | 7.2:+28375251 | MS.gene27768:CDS |
| GCATAGCATTCGCTGTGGTT+TGG | 0.331467 | 7.2:+28374161 | MS.gene27768:CDS |
| ACCGCGTTTATTCGATCCTT+GGG | 0.332274 | 7.2:+28374799 | MS.gene27768:CDS |
| GGGTATCGCTTTGATAATTA+CGG | 0.355376 | 7.2:+28374378 | MS.gene27768:intron |
| AAGATGGTTCATTGATGTTC+TGG | 0.357441 | 7.2:+28373478 | MS.gene27768:CDS |
| ATATACTTTACAGGTATGAT+TGG | 0.373989 | 7.2:+28375052 | MS.gene27768:intron |
| TTTATGCTTTACAAACTAAT+GGG | 0.398548 | 7.2:+28373455 | MS.gene27768:CDS |
| CGCGGTATCTTGAGCAGCAT+GGG | 0.404406 | 7.2:-28374782 | None:intergenic |
| ACGATGAGTGCCTATGGTTT+AGG | 0.409248 | 7.2:+28375114 | MS.gene27768:CDS |
| TACCGCGTTTATTCGATCCT+TGG | 0.419818 | 7.2:+28374798 | MS.gene27768:CDS |
| ATAATCATCACCTTGAGGTT+TGG | 0.432877 | 7.2:-28374421 | None:intergenic |
| GGGACTGCAAACTTGCTTAG+TGG | 0.435026 | 7.2:+28373893 | MS.gene27768:intron |
| AAGAATATCTTGACCAATCC+AGG | 0.442943 | 7.2:-28374209 | None:intergenic |
| TTTACTAACCAAGTGTAAAT+GGG | 0.447535 | 7.2:-28375308 | None:intergenic |
| GTGCTTCTTACTGGTCTGCC+TGG | 0.461814 | 7.2:+28373067 | MS.gene27768:CDS |
| AACACCCTCTCTGGCAGTCC+AGG | 0.466046 | 7.2:-28373085 | None:intergenic |
| CTTCCTATATGACATCTTCT+GGG | 0.469044 | 7.2:+28374575 | MS.gene27768:CDS |
| TTTACAAACTAATGGGAAGA+TGG | 0.472450 | 7.2:+28373462 | MS.gene27768:CDS |
| TGGGGTGGTTACAGTGTCAT+CGG | 0.481076 | 7.2:+28374818 | MS.gene27768:CDS |
| ACACCCAGAAGATGTCATAT+AGG | 0.489454 | 7.2:-28374578 | None:intergenic |
| TAGCTTTGAATTTGATGGAT+GGG | 0.490494 | 7.2:+28375256 | MS.gene27768:CDS |
| GCGGGAGATTACTCGTCTAC+TGG | 0.490969 | 7.2:-28375807 | None:intergenic |
| TTGCTCAATAACACCCTCTC+TGG | 0.497863 | 7.2:-28373094 | None:intergenic |
| ATGTGAAACAGCACCGAAGA+AGG | 0.501888 | 7.2:-28374113 | None:intergenic |
| AACGCCGTGTATCGTATGCC+TGG | 0.505276 | 7.2:+28374191 | MS.gene27768:CDS |
| TATGTGAAAGTACCCTTCTT+CGG | 0.508554 | 7.2:+28374100 | MS.gene27768:CDS |
| CCATGAGAGTGTGATGATAG+TGG | 0.511765 | 7.2:+28374620 | MS.gene27768:CDS |
| TTGTGGACGATGAGTGCCTA+TGG | 0.521690 | 7.2:+28375108 | MS.gene27768:CDS |
| CCACTATCATCACACTCTCA+TGG | 0.522407 | 7.2:-28374620 | None:intergenic |
| GGGACTATATACAGCAAAGC+TGG | 0.523296 | 7.2:-28375288 | None:intergenic |
| CCAGTAAGAAGCACAGAGAA+TGG | 0.528439 | 7.2:-28373058 | None:intergenic |
| TCTGCCTGGACTGCCAGAGA+GGG | 0.540666 | 7.2:+28373081 | MS.gene27768:CDS |
| TTCGAGCAGGATACTTCTTG+TGG | 0.550885 | 7.2:+28375091 | MS.gene27768:CDS |
| CGTGTATCGTATGCCTGGAT+TGG | 0.553817 | 7.2:+28374196 | MS.gene27768:CDS |
| GTCTGCCTGGACTGCCAGAG+AGG | 0.555701 | 7.2:+28373080 | MS.gene27768:CDS |
| ACGCGGTATCTTGAGCAGCA+TGG | 0.557275 | 7.2:-28374783 | None:intergenic |
| GAAAATGCTACTAAAAGCCC+TGG | 0.557670 | 7.2:-28374860 | None:intergenic |
| TCCTCTTTGATGTGAGGGCA+AGG | 0.564220 | 7.2:-28375777 | None:intergenic |
| ATAGCTTTGAATTTGATGGA+TGG | 0.564608 | 7.2:+28375255 | MS.gene27768:CDS |
| CTTCTAAATATAGAGAATGC+TGG | 0.565274 | 7.2:+28373362 | MS.gene27768:CDS |
| ATGGTTCATTGATGTTCTGG+TGG | 0.565632 | 7.2:+28373481 | MS.gene27768:CDS |
| CAGCGAATGCTATGCAGAAG+GGG | 0.567384 | 7.2:-28374153 | None:intergenic |
| GGTGATAAGAGTGGAGAAGA+TGG | 0.570626 | 7.2:+28374755 | MS.gene27768:CDS |
| CTATAGCATACCTAAACCAT+AGG | 0.572085 | 7.2:-28375124 | None:intergenic |
| ATAGCATTCGCTGTGGTTTG+GGG | 0.575530 | 7.2:+28374163 | MS.gene27768:CDS |
| ACAGCGAATGCTATGCAGAA+GGG | 0.578803 | 7.2:-28374154 | None:intergenic |
| TGATGATCCTCTTTGATGTG+AGG | 0.582482 | 7.2:-28375783 | None:intergenic |
| TATATAGTCCCATTTACACT+TGG | 0.584363 | 7.2:+28375300 | MS.gene27768:CDS |
| AAAATGTTCATAGTTTCAGA+TGG | 0.586719 | 7.2:+28374056 | MS.gene27768:intron |
| CGTTTATTCGATCCTTGGGG+TGG | 0.589284 | 7.2:+28374803 | MS.gene27768:CDS |
| GCGAAGAGGAACCTTCGAGC+AGG | 0.590157 | 7.2:+28375078 | MS.gene27768:CDS |
| CAATCCAGGCATACGATACA+CGG | 0.590284 | 7.2:-28374195 | None:intergenic |
| CACAGCGAATGCTATGCAGA+AGG | 0.597296 | 7.2:-28374155 | None:intergenic |
| TTGAATTTGATGGATGGGCA+TGG | 0.598006 | 7.2:+28375261 | MS.gene27768:CDS |
| TTGTCATTGGGAAAGAAGAG+AGG | 0.601284 | 7.2:+28375714 | MS.gene27768:CDS |
| CCAGAAGATGTCATATAGGA+AGG | 0.604622 | 7.2:-28374574 | None:intergenic |
| TGTCCAAATACCAAACCTCA+AGG | 0.614521 | 7.2:+28374411 | MS.gene27768:CDS |
| GATGATCCTCTTTGATGTGA+GGG | 0.616637 | 7.2:-28375782 | None:intergenic |
| TGTGAAACAGCACCGAAGAA+GGG | 0.620570 | 7.2:-28374112 | None:intergenic |
| GTAGCTCGCGGTGATAAGAG+TGG | 0.630975 | 7.2:+28374746 | MS.gene27768:CDS |
| CCGCGTTTATTCGATCCTTG+GGG | 0.643328 | 7.2:+28374800 | MS.gene27768:CDS |
| ACAAGAAGTATCCTGCTCGA+AGG | 0.648586 | 7.2:-28375089 | None:intergenic |
| TTACAGTGTCATCGGTTTCG+GGG | 0.651346 | 7.2:+28374826 | MS.gene27768:CDS |
| AACGAATGAAAGTGCTGCCG+TGG | 0.651931 | 7.2:-28373411 | None:intergenic |
| GCCTTGCCCTCACATCAAAG+AGG | 0.653911 | 7.2:+28375776 | MS.gene27768:CDS |
| TCAAAGCTATGTATGTGACA+AGG | 0.659484 | 7.2:-28375242 | None:intergenic |
| GGTATGATTGGCTAGCGAAG+AGG | 0.666042 | 7.2:+28375064 | MS.gene27768:intron |
| AGCGAATGCTATGCAGAAGG+GGG | 0.677222 | 7.2:-28374152 | None:intergenic |
| ACTTCTTTACAGGTAGCTCG+CGG | 0.677537 | 7.2:+28374734 | MS.gene27768:intron |
| CTTCTGCATAGCATTCGCTG+TGG | 0.687281 | 7.2:+28374156 | MS.gene27768:CDS |
| GCGGTATCTTGAGCAGCATG+GGG | 0.687520 | 7.2:-28374781 | None:intergenic |
| ATGACACTGTAACCACCCCA+AGG | 0.695167 | 7.2:-28374815 | None:intergenic |
| CCCCAAGGATCGAATAAACG+CGG | 0.705852 | 7.2:-28374800 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGATATATAGAAATTTA+TGG | + | chr7.2:28374316-28374335 | MS.gene27768:intron | 10.0% |
| !! | TAACAAATCAAAAAAAATAG+CGG | + | chr7.2:28375406-28375425 | MS.gene27768:intron | 15.0% |
| !!! | AATGTTATGTATTTTGTTAA+TGG | + | chr7.2:28375005-28375024 | MS.gene27768:intron | 15.0% |
| !! | AAATCAAACTTTGTATAGAA+TGG | - | chr7.2:28374677-28374696 | None:intergenic | 20.0% |
| !! | ATTTATTATTCCAAACACTT+TGG | + | chr7.2:28373769-28373788 | MS.gene27768:intron | 20.0% |
| !! | GAAAGAAAACAAACTATTAA+AGG | - | chr7.2:28373230-28373249 | None:intergenic | 20.0% |
| !! | TTTATGCTTTACAAACTAAT+GGG | + | chr7.2:28373455-28373474 | MS.gene27768:CDS | 20.0% |
| !!! | AGTGTCTTTATTTGTAAAAT+AGG | - | chr7.2:28374506-28374525 | None:intergenic | 20.0% |
| !!! | ATAATTTAAAAGTGTCTCAA+AGG | + | chr7.2:28373707-28373726 | MS.gene27768:intron | 20.0% |
| !!! | ATATTTTGTAACTTCAAATC+CGG | - | chr7.2:28373681-28373700 | None:intergenic | 20.0% |
| !!! | ATGTCAATTCAATATCATTT+TGG | - | chr7.2:28374035-28374054 | None:intergenic | 20.0% |
| !!! | ATTATTTTGGTCATTTATGA+AGG | + | chr7.2:28373258-28373277 | MS.gene27768:intron | 20.0% |
| !!! | ATTTTTAATCTTCTCTTTTC+AGG | + | chr7.2:28374357-28374376 | MS.gene27768:intron | 20.0% |
| !!! | TAATTTTCCTTGATTATGTT+TGG | + | chr7.2:28375175-28375194 | MS.gene27768:intron | 20.0% |
| !!! | TGTCAATTCAATATCATTTT+GGG | - | chr7.2:28374034-28374053 | None:intergenic | 20.0% |
| !!! | TTTTACAAATAAAGACACTA+AGG | + | chr7.2:28374507-28374526 | MS.gene27768:intron | 20.0% |
| !!! | TTTTTAATCTTCTCTTTTCA+GGG | + | chr7.2:28374358-28374377 | MS.gene27768:intron | 20.0% |
| ! | AAAACATGAACCAAAGAAAA+AGG | - | chr7.2:28374280-28374299 | None:intergenic | 25.0% |
| ! | AAAATGTTCATAGTTTCAGA+TGG | + | chr7.2:28374056-28374075 | MS.gene27768:intron | 25.0% |
| ! | ACCTAATAATATGCTTCATA+TGG | - | chr7.2:28375636-28375655 | None:intergenic | 25.0% |
| ! | ATATACTTTACAGGTATGAT+TGG | + | chr7.2:28375052-28375071 | MS.gene27768:intron | 25.0% |
| ! | ATCCTTGTAACAAAAAAGTT+TGG | + | chr7.2:28374971-28374990 | MS.gene27768:intron | 25.0% |
| ! | CGAATAAATTTGACATGAAA+AGG | - | chr7.2:28373146-28373165 | None:intergenic | 25.0% |
| ! | GTTAAATTGAAAATCTCACA+TGG | + | chr7.2:28374889-28374908 | MS.gene27768:intron | 25.0% |
| ! | GTTTATGCTTTACAAACTAA+TGG | + | chr7.2:28373454-28373473 | MS.gene27768:CDS | 25.0% |
| ! | TATAGATAATTTACCATTGC+AGG | + | chr7.2:28373325-28373344 | MS.gene27768:intron | 25.0% |
| ! | TATCGTTAAATAGATAACAC+TGG | - | chr7.2:28375452-28375471 | None:intergenic | 25.0% |
| ! | TTTACTAACCAAGTGTAAAT+GGG | - | chr7.2:28375311-28375330 | None:intergenic | 25.0% |
| ! | TTTGTATAGAATGGTAGTAA+CGG | - | chr7.2:28374668-28374687 | None:intergenic | 25.0% |
| !! | AATACATAACATTCTTTTCC+TGG | - | chr7.2:28374998-28375017 | None:intergenic | 25.0% |
| !! | AATTTGAAAACCAAAGTGTT+TGG | - | chr7.2:28373782-28373801 | None:intergenic | 25.0% |
| !! | AGGTATACATTCTTTTTACA+AGG | + | chr7.2:28374527-28374546 | MS.gene27768:intron | 25.0% |
| !! | ATACATTCTTTTTACAAGGT+TGG | + | chr7.2:28374531-28374550 | MS.gene27768:intron | 25.0% |
| !! | ATGCTATAGTTTTCAATGAT+AGG | + | chr7.2:28375138-28375157 | MS.gene27768:intron | 25.0% |
| !! | TTTTACTAACCAAGTGTAAA+TGG | - | chr7.2:28375312-28375331 | None:intergenic | 25.0% |
| !! | TTTTAGTAGCATTTTCGTTA+AGG | + | chr7.2:28374867-28374886 | MS.gene27768:CDS | 25.0% |
| !!! | ATACATAGCTTTGAATTTGA+TGG | + | chr7.2:28375251-28375270 | MS.gene27768:CDS | 25.0% |
| !!! | CTTCATTTTTTTACTCTTTC+TGG | + | chr7.2:28374449-28374468 | MS.gene27768:intron | 25.0% |
| !!! | CTTTCTGAGATGAATTATTT+TGG | + | chr7.2:28373245-28373264 | MS.gene27768:intron | 25.0% |
| !!! | TTTGATTTGTTATTGACTTC+AGG | - | chr7.2:28375398-28375417 | None:intergenic | 25.0% |
| AAACATTCTTGTGTATATGC+AGG | + | chr7.2:28375684-28375703 | MS.gene27768:intron | 30.0% | |
| AAGAAACATGGATAAGACTT+GGG | - | chr7.2:28375597-28375616 | None:intergenic | 30.0% | |
| ACTCTGTTGATATACTTTAC+AGG | + | chr7.2:28375043-28375062 | MS.gene27768:intron | 30.0% | |
| AGTTTGACCAAAGAAACAAT+GGG | - | chr7.2:28374257-28374276 | None:intergenic | 30.0% | |
| ATTTGACATGAAAAGGAACT+AGG | - | chr7.2:28373139-28373158 | None:intergenic | 30.0% | |
| CTATACAATGTCAACTTTAC+AGG | + | chr7.2:28373938-28373957 | MS.gene27768:intron | 30.0% | |
| CTGTAATCCAAACATAATCA+AGG | - | chr7.2:28375185-28375204 | None:intergenic | 30.0% | |
| CTTCTAAATATAGAGAATGC+TGG | + | chr7.2:28373362-28373381 | MS.gene27768:CDS | 30.0% | |
| GCCATATGAAGCATATTATT+AGG | + | chr7.2:28375632-28375651 | MS.gene27768:intron | 30.0% | |
| TAAGAAACATGGATAAGACT+TGG | - | chr7.2:28375598-28375617 | None:intergenic | 30.0% | |
| TAGTTAACATTAGTAGTCCA+AGG | - | chr7.2:28374925-28374944 | None:intergenic | 30.0% | |
| TATATAGTCCCATTTACACT+TGG | + | chr7.2:28375300-28375319 | MS.gene27768:CDS | 30.0% | |
| TTATTCTTTGCATGCTTTCA+GGG | + | chr7.2:28373873-28373892 | MS.gene27768:intron | 30.0% | |
| TTGTATAGAATGGTAGTAAC+GGG | - | chr7.2:28374667-28374686 | None:intergenic | 30.0% | |
| TTTACAAACTAATGGGAAGA+TGG | + | chr7.2:28373462-28373481 | MS.gene27768:CDS | 30.0% | |
| TTTATTCTTTGCATGCTTTC+AGG | + | chr7.2:28373872-28373891 | MS.gene27768:intron | 30.0% | |
| TTTGAATAATCATCACCTTG+AGG | - | chr7.2:28374429-28374448 | None:intergenic | 30.0% | |
| ! | AACTTGAGATTTTATGGACA+AGG | + | chr7.2:28375739-28375758 | MS.gene27768:CDS | 30.0% |
| ! | ACTTGAGATTTTATGGACAA+GGG | + | chr7.2:28375740-28375759 | MS.gene27768:CDS | 30.0% |
| !! | AGGTGAGTTATTATTTTTCC+AGG | + | chr7.2:28373528-28373547 | MS.gene27768:intron | 30.0% |
| !! | AGTTATTATTTTTCCAGGCT+TGG | + | chr7.2:28373533-28373552 | MS.gene27768:intron | 30.0% |
| !! | ATAGCTTTGAATTTGATGGA+TGG | + | chr7.2:28375255-28375274 | MS.gene27768:CDS | 30.0% |
| !! | CTTTGGTTCATGTTTTATAC+TGG | + | chr7.2:28374284-28374303 | MS.gene27768:intron | 30.0% |
| !! | TAGCTTTGAATTTGATGGAT+GGG | + | chr7.2:28375256-28375275 | MS.gene27768:CDS | 30.0% |
| !!! | AGAGTGTAGAGTTTTTTTAG+GGG | - | chr7.2:28374713-28374732 | None:intergenic | 30.0% |
| !!! | GAGAGTGTAGAGTTTTTTTA+GGG | - | chr7.2:28374714-28374733 | None:intergenic | 30.0% |
| !!! | GTCCAAACTTTTTTGTTACA+AGG | - | chr7.2:28374976-28374995 | None:intergenic | 30.0% |
| !!! | TGAGAGTGTAGAGTTTTTTT+AGG | - | chr7.2:28374715-28374734 | None:intergenic | 30.0% |
| !!! | TTTTTTACTCTTTCTGGCTA+TGG | + | chr7.2:28374455-28374474 | MS.gene27768:intron | 30.0% |
| !!! | TTTTTTGGAAATAAGCACCA+CGG | + | chr7.2:28373394-28373413 | MS.gene27768:CDS | 30.0% |
| AAGAATATCTTGACCAATCC+AGG | - | chr7.2:28374212-28374231 | None:intergenic | 35.0% | |
| AAGATGGTTCATTGATGTTC+TGG | + | chr7.2:28373478-28373497 | MS.gene27768:CDS | 35.0% | |
| AATAGATAACACTGGTGTAG+TGG | - | chr7.2:28375444-28375463 | None:intergenic | 35.0% | |
| ACCTGTAGATCAAAATCCAA+GGG | - | chr7.2:28375220-28375239 | None:intergenic | 35.0% | |
| ATAATCATCACCTTGAGGTT+TGG | - | chr7.2:28374424-28374443 | None:intergenic | 35.0% | |
| ATATGCTTCATATGGCATAG+TGG | - | chr7.2:28375628-28375647 | None:intergenic | 35.0% | |
| CTATAGCATACCTAAACCAT+AGG | - | chr7.2:28375127-28375146 | None:intergenic | 35.0% | |
| CTTCCTATATGACATCTTCT+GGG | + | chr7.2:28374575-28374594 | MS.gene27768:CDS | 35.0% | |
| CTTCTTTCCCAATGACAAAA+AGG | - | chr7.2:28375712-28375731 | None:intergenic | 35.0% | |
| GAGTTTGACCAAAGAAACAA+TGG | - | chr7.2:28374258-28374277 | None:intergenic | 35.0% | |
| GTAACAAAAAAGTTTGGACC+AGG | + | chr7.2:28374977-28374996 | MS.gene27768:intron | 35.0% | |
| GTGGGATATAGTAAGAAACA+TGG | - | chr7.2:28375609-28375628 | None:intergenic | 35.0% | |
| TATGCTTCATATGGCATAGT+GGG | - | chr7.2:28375627-28375646 | None:intergenic | 35.0% | |
| TCAAAGCTATGTATGTGACA+AGG | - | chr7.2:28375245-28375264 | None:intergenic | 35.0% | |
| TCTTGACATTATGTTAGAGC+AGG | + | chr7.2:28373600-28373619 | MS.gene27768:intron | 35.0% | |
| TGAGCAAGAGAAGCTATTAA+AGG | + | chr7.2:28373110-28373129 | MS.gene27768:CDS | 35.0% | |
| TTAAAGGAATCTTCTGTGAG+AGG | - | chr7.2:28373214-28373233 | None:intergenic | 35.0% | |
| ! | AACGCTAGGATACCAAATTT+TGG | - | chr7.2:28373631-28373650 | None:intergenic | 35.0% |
| ! | CTTGAGATTTTATGGACAAG+GGG | + | chr7.2:28375741-28375760 | MS.gene27768:CDS | 35.0% |
| ! | GCTTATTTCCAAAAAAGCAC+TGG | - | chr7.2:28373390-28373409 | None:intergenic | 35.0% |
| ! | GGGTATCGCTTTGATAATTA+CGG | + | chr7.2:28374378-28374397 | MS.gene27768:intron | 35.0% |
| ! | TGGTCAAACTCCTTTTTCTT+TGG | + | chr7.2:28374267-28374286 | MS.gene27768:intron | 35.0% |
| ! | TTGAGATTTTATGGACAAGG+GGG | + | chr7.2:28375742-28375761 | MS.gene27768:CDS | 35.0% |
| ! | TTGCTTTCCCATTGTTTCTT+TGG | + | chr7.2:28374247-28374266 | MS.gene27768:intron | 35.0% |
| !! | TATGTGAAAGTACCCTTCTT+CGG | + | chr7.2:28374100-28374119 | MS.gene27768:CDS | 35.0% |
| !!! | GTTTAGTGGTTTTAGTGTAG+CGG | - | chr7.2:28375523-28375542 | None:intergenic | 35.0% |
| AACTTCAAATCCGGACAGAA+AGG | - | chr7.2:28373672-28373691 | None:intergenic | 40.0% | |
| ACACCCAGAAGATGTCATAT+AGG | - | chr7.2:28374581-28374600 | None:intergenic | 40.0% | |
| ACAGTTTAAATCCTGTCCCT+TGG | + | chr7.2:28375201-28375220 | MS.gene27768:intron | 40.0% | |
| ATGGTTCATTGATGTTCTGG+TGG | + | chr7.2:28373481-28373500 | MS.gene27768:CDS | 40.0% | |
| CAAGGATTTGATGTGCACTA+CGG | - | chr7.2:28374958-28374977 | None:intergenic | 40.0% | |
| CACATGGATCACTTATTCCT+TGG | + | chr7.2:28374905-28374924 | MS.gene27768:intron | 40.0% | |
| CCAGAAGATGTCATATAGGA+AGG | - | chr7.2:28374577-28374596 | None:intergenic | 40.0% | |
| CCTTCCTATATGACATCTTC+TGG | + | chr7.2:28374574-28374593 | MS.gene27768:CDS | 40.0% | |
| CTACACTCTCACTTCTTTAC+AGG | + | chr7.2:28374724-28374743 | MS.gene27768:intron | 40.0% | |
| GAAAATGCTACTAAAAGCCC+TGG | - | chr7.2:28374863-28374882 | None:intergenic | 40.0% | |
| GACCTGTAGATCAAAATCCA+AGG | - | chr7.2:28375221-28375240 | None:intergenic | 40.0% | |
| GACTTGGGATAAGTTTCACA+AGG | - | chr7.2:28375582-28375601 | None:intergenic | 40.0% | |
| GATGATCCTCTTTGATGTGA+GGG | - | chr7.2:28375785-28375804 | None:intergenic | 40.0% | |
| TAATCATCAAGAACCAAGCC+TGG | - | chr7.2:28373549-28373568 | None:intergenic | 40.0% | |
| TAGATCAAAATCCAAGGGAC+AGG | - | chr7.2:28375215-28375234 | None:intergenic | 40.0% | |
| TCATCTGAATCATCCTGCAA+TGG | - | chr7.2:28373341-28373360 | None:intergenic | 40.0% | |
| TGATGATCCTCTTTGATGTG+AGG | - | chr7.2:28375786-28375805 | None:intergenic | 40.0% | |
| TGTCCAAATACCAAACCTCA+AGG | + | chr7.2:28374411-28374430 | MS.gene27768:CDS | 40.0% | |
| TTGTCATTGGGAAAGAAGAG+AGG | + | chr7.2:28375714-28375733 | MS.gene27768:CDS | 40.0% | |
| ! | CTTTTTGCGTAGTCAAACAG+CGG | - | chr7.2:28375557-28375576 | None:intergenic | 40.0% |
| ! | GAGGCGAACTTGAGATTTTA+TGG | + | chr7.2:28375733-28375752 | MS.gene27768:CDS | 40.0% |
| ! | GCAGGAACCTTTTTGTCATT+GGG | + | chr7.2:28375702-28375721 | MS.gene27768:intron | 40.0% |
| ! | TCACCTTGAGGTTTGGTATT+TGG | - | chr7.2:28374417-28374436 | None:intergenic | 40.0% |
| ! | TCGGGGACATAATTTTACCA+GGG | + | chr7.2:28374843-28374862 | MS.gene27768:CDS | 40.0% |
| ! | TGCAGGAACCTTTTTGTCAT+TGG | + | chr7.2:28375701-28375720 | MS.gene27768:intron | 40.0% |
| ! | TTCGGGGACATAATTTTACC+AGG | + | chr7.2:28374842-28374861 | MS.gene27768:CDS | 40.0% |
| ! | TTGAATTTGATGGATGGGCA+TGG | + | chr7.2:28375261-28375280 | MS.gene27768:CDS | 40.0% |
| !! | ACTCTTTCTGGCTATGGATA+TGG | + | chr7.2:28374461-28374480 | MS.gene27768:intron | 40.0% |
| !! | AGCAAATGGCTCTAAAGTCA+TGG | + | chr7.2:28373818-28373837 | MS.gene27768:intron | 40.0% |
| !! | CTGGTGGTTCTGTTTTGTAT+TGG | + | chr7.2:28373497-28373516 | MS.gene27768:CDS | 40.0% |
| !! | GACTTTAGAGCCATTTGCTA+TGG | - | chr7.2:28373817-28373836 | None:intergenic | 40.0% |
| !! | GCAAATGGCTCTAAAGTCAT+GGG | + | chr7.2:28373819-28373838 | MS.gene27768:intron | 40.0% |
| !! | GTGGTTCTGTTTTGTATTGG+TGG | + | chr7.2:28373500-28373519 | MS.gene27768:CDS | 40.0% |
| !! | TCCCTTGGATTTTGATCTAC+AGG | + | chr7.2:28375216-28375235 | MS.gene27768:intron | 40.0% |
| !!! | GTTTTGTATTGGTGGTGTTG+AGG | + | chr7.2:28373508-28373527 | MS.gene27768:CDS | 40.0% |
| ACAGCGAATGCTATGCAGAA+GGG | - | chr7.2:28374157-28374176 | None:intergenic | 45.0% | |
| ACCGCGTTTATTCGATCCTT+GGG | + | chr7.2:28374799-28374818 | MS.gene27768:CDS | 45.0% | |
| ACGATGAGTGCCTATGGTTT+AGG | + | chr7.2:28375114-28375133 | MS.gene27768:CDS | 45.0% | |
| ACTTCTTTACAGGTAGCTCG+CGG | + | chr7.2:28374734-28374753 | MS.gene27768:intron | 45.0% | |
| ATAGCATTCGCTGTGGTTTG+GGG | + | chr7.2:28374163-28374182 | MS.gene27768:CDS | 45.0% | |
| CAATCCAGGCATACGATACA+CGG | - | chr7.2:28374198-28374217 | None:intergenic | 45.0% | |
| CACATTAGTGCCTTTCTGTC+CGG | + | chr7.2:28373659-28373678 | MS.gene27768:intron | 45.0% | |
| CATAGCATTCGCTGTGGTTT+GGG | + | chr7.2:28374162-28374181 | MS.gene27768:CDS | 45.0% | |
| CCACTATCATCACACTCTCA+TGG | - | chr7.2:28374623-28374642 | None:intergenic | 45.0% | |
| CCATTCTCTGTGCTTCTTAC+TGG | + | chr7.2:28373058-28373077 | MS.gene27768:CDS | 45.0% | |
| GAGCAGGCTACACCAAAATT+TGG | + | chr7.2:28373616-28373635 | MS.gene27768:intron | 45.0% | |
| GGGACTATATACAGCAAAGC+TGG | - | chr7.2:28375291-28375310 | None:intergenic | 45.0% | |
| GGTGATAAGAGTGGAGAAGA+TGG | + | chr7.2:28374755-28374774 | MS.gene27768:CDS | 45.0% | |
| GTCCTGTCATCCATAGCAAA+TGG | + | chr7.2:28373804-28373823 | MS.gene27768:intron | 45.0% | |
| TACCGCGTTTATTCGATCCT+TGG | + | chr7.2:28374798-28374817 | MS.gene27768:CDS | 45.0% | |
| TTCGAGCAGGATACTTCTTG+TGG | + | chr7.2:28375091-28375110 | MS.gene27768:CDS | 45.0% | |
| TTGCTCAATAACACCCTCTC+TGG | - | chr7.2:28373097-28373116 | None:intergenic | 45.0% | |
| TTGGTATCCTAGCGTTCAGA+CGG | + | chr7.2:28373635-28373654 | MS.gene27768:intron | 45.0% | |
| ! | ATGTGAAACAGCACCGAAGA+AGG | - | chr7.2:28374116-28374135 | None:intergenic | 45.0% |
| ! | CCAGTAAGAAGCACAGAGAA+TGG | - | chr7.2:28373061-28373080 | None:intergenic | 45.0% |
| ! | CCATGAGAGTGTGATGATAG+TGG | + | chr7.2:28374620-28374639 | MS.gene27768:CDS | 45.0% |
| ! | TGTGAAACAGCACCGAAGAA+GGG | - | chr7.2:28374115-28374134 | None:intergenic | 45.0% |
| !! | ACAAGAAGTATCCTGCTCGA+AGG | - | chr7.2:28375092-28375111 | None:intergenic | 45.0% |
| !! | AGCCATTTGCTATGGATGAC+AGG | - | chr7.2:28373809-28373828 | None:intergenic | 45.0% |
| !! | ATGTGAGGGCAAGGCATTTT+TGG | - | chr7.2:28375771-28375790 | None:intergenic | 45.0% |
| !! | GGTTACAGTGTCATCGGTTT+CGG | + | chr7.2:28374824-28374843 | MS.gene27768:CDS | 45.0% |
| !! | GTTACAGTGTCATCGGTTTC+GGG | + | chr7.2:28374825-28374844 | MS.gene27768:CDS | 45.0% |
| !! | TTACAGTGTCATCGGTTTCG+GGG | + | chr7.2:28374826-28374845 | MS.gene27768:CDS | 45.0% |
| !!! | TGCTGGTTCCAGTGCTTTTT+TGG | + | chr7.2:28373379-28373398 | MS.gene27768:CDS | 45.0% |
| AATGTGTCCGTCTGAACGCT+AGG | - | chr7.2:28373645-28373664 | None:intergenic | 50.0% | |
| AGCGAATGCTATGCAGAAGG+GGG | - | chr7.2:28374155-28374174 | None:intergenic | 50.0% | |
| ATGACACTGTAACCACCCCA+AGG | - | chr7.2:28374818-28374837 | None:intergenic | 50.0% | |
| CACAGCGAATGCTATGCAGA+AGG | - | chr7.2:28374158-28374177 | None:intergenic | 50.0% | |
| CAGCGAATGCTATGCAGAAG+GGG | - | chr7.2:28374156-28374175 | None:intergenic | 50.0% | |
| CCCCAAGGATCGAATAAACG+CGG | - | chr7.2:28374803-28374822 | None:intergenic | 50.0% | |
| CCGCGTTTATTCGATCCTTG+GGG | + | chr7.2:28374800-28374819 | MS.gene27768:CDS | 50.0% | |
| CGGCTATCACAGTGGTTTAG+TGG | - | chr7.2:28375537-28375556 | None:intergenic | 50.0% | |
| CGTGTATCGTATGCCTGGAT+TGG | + | chr7.2:28374196-28374215 | MS.gene27768:CDS | 50.0% | |
| CGTTTATTCGATCCTTGGGG+TGG | + | chr7.2:28374803-28374822 | MS.gene27768:CDS | 50.0% | |
| CTTCTGCATAGCATTCGCTG+TGG | + | chr7.2:28374156-28374175 | MS.gene27768:CDS | 50.0% | |
| GCATAGCATTCGCTGTGGTT+TGG | + | chr7.2:28374161-28374180 | MS.gene27768:CDS | 50.0% | |
| TCAAACAGCGGCTATCACAG+TGG | - | chr7.2:28375545-28375564 | None:intergenic | 50.0% | |
| TCCTCTTTGATGTGAGGGCA+AGG | - | chr7.2:28375780-28375799 | None:intergenic | 50.0% | |
| TCTTCTGTGAGAGGACTGTG+AGG | - | chr7.2:28373205-28373224 | None:intergenic | 50.0% | |
| TGGGGTGGTTACAGTGTCAT+CGG | + | chr7.2:28374818-28374837 | MS.gene27768:CDS | 50.0% | |
| TTGTGGACGATGAGTGCCTA+TGG | + | chr7.2:28375108-28375127 | MS.gene27768:CDS | 50.0% | |
| ! | GGGACTGCAAACTTGCTTAG+TGG | + | chr7.2:28373893-28373912 | MS.gene27768:intron | 50.0% |
| ! | GGTATGATTGGCTAGCGAAG+AGG | + | chr7.2:28375064-28375083 | MS.gene27768:intron | 50.0% |
| !! | AACGAATGAAAGTGCTGCCG+TGG | - | chr7.2:28373414-28373433 | None:intergenic | 50.0% |
| AACGCCGTGTATCGTATGCC+TGG | + | chr7.2:28374191-28374210 | MS.gene27768:CDS | 55.0% | |
| ACGCGGTATCTTGAGCAGCA+TGG | - | chr7.2:28374786-28374805 | None:intergenic | 55.0% | |
| CGCGGTATCTTGAGCAGCAT+GGG | - | chr7.2:28374785-28374804 | None:intergenic | 55.0% | |
| GCCTTGCCCTCACATCAAAG+AGG | + | chr7.2:28375776-28375795 | MS.gene27768:CDS | 55.0% | |
| GCGGTATCTTGAGCAGCATG+GGG | - | chr7.2:28374784-28374803 | None:intergenic | 55.0% | |
| GTAGCTCGCGGTGATAAGAG+TGG | + | chr7.2:28374746-28374765 | MS.gene27768:CDS | 55.0% | |
| ! | GTGCTTCTTACTGGTCTGCC+TGG | + | chr7.2:28373067-28373086 | MS.gene27768:CDS | 55.0% |
| AACACCCTCTCTGGCAGTCC+AGG | - | chr7.2:28373088-28373107 | None:intergenic | 60.0% | |
| GCGAAGAGGAACCTTCGAGC+AGG | + | chr7.2:28375078-28375097 | MS.gene27768:CDS | 60.0% | |
| TCTGCCTGGACTGCCAGAGA+GGG | + | chr7.2:28373081-28373100 | MS.gene27768:CDS | 60.0% | |
| GTCTGCCTGGACTGCCAGAG+AGG | + | chr7.2:28373080-28373099 | MS.gene27768:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 28373045 | 28375821 | 28373045 | ID=MS.gene27768 |
| chr7.2 | mRNA | 28373045 | 28375821 | 28373045 | ID=MS.gene27768.t1;Parent=MS.gene27768 |
| chr7.2 | exon | 28373045 | 28373131 | 28373045 | ID=MS.gene27768.t1.exon1;Parent=MS.gene27768.t1 |
| chr7.2 | CDS | 28373045 | 28373131 | 28373045 | ID=cds.MS.gene27768.t1;Parent=MS.gene27768.t1 |
| chr7.2 | exon | 28373347 | 28373529 | 28373347 | ID=MS.gene27768.t1.exon2;Parent=MS.gene27768.t1 |
| chr7.2 | CDS | 28373347 | 28373529 | 28373347 | ID=cds.MS.gene27768.t1;Parent=MS.gene27768.t1 |
| chr7.2 | exon | 28373894 | 28373928 | 28373894 | ID=MS.gene27768.t1.exon3;Parent=MS.gene27768.t1 |
| chr7.2 | CDS | 28373894 | 28373928 | 28373894 | ID=cds.MS.gene27768.t1;Parent=MS.gene27768.t1 |
| chr7.2 | exon | 28374069 | 28374231 | 28374069 | ID=MS.gene27768.t1.exon4;Parent=MS.gene27768.t1 |
| chr7.2 | CDS | 28374069 | 28374231 | 28374069 | ID=cds.MS.gene27768.t1;Parent=MS.gene27768.t1 |
| chr7.2 | exon | 28374379 | 28374432 | 28374379 | ID=MS.gene27768.t1.exon5;Parent=MS.gene27768.t1 |
| chr7.2 | CDS | 28374379 | 28374432 | 28374379 | ID=cds.MS.gene27768.t1;Parent=MS.gene27768.t1 |
| chr7.2 | exon | 28374549 | 28374641 | 28374549 | ID=MS.gene27768.t1.exon6;Parent=MS.gene27768.t1 |
| chr7.2 | CDS | 28374549 | 28374641 | 28374549 | ID=cds.MS.gene27768.t1;Parent=MS.gene27768.t1 |
| chr7.2 | exon | 28374746 | 28374888 | 28374746 | ID=MS.gene27768.t1.exon7;Parent=MS.gene27768.t1 |
| chr7.2 | CDS | 28374746 | 28374888 | 28374746 | ID=cds.MS.gene27768.t1;Parent=MS.gene27768.t1 |
| chr7.2 | exon | 28375065 | 28375135 | 28375065 | ID=MS.gene27768.t1.exon8;Parent=MS.gene27768.t1 |
| chr7.2 | CDS | 28375065 | 28375135 | 28375065 | ID=cds.MS.gene27768.t1;Parent=MS.gene27768.t1 |
| chr7.2 | exon | 28375238 | 28375321 | 28375238 | ID=MS.gene27768.t1.exon9;Parent=MS.gene27768.t1 |
| chr7.2 | CDS | 28375238 | 28375321 | 28375238 | ID=cds.MS.gene27768.t1;Parent=MS.gene27768.t1 |
| chr7.2 | exon | 28375706 | 28375821 | 28375706 | ID=MS.gene27768.t1.exon10;Parent=MS.gene27768.t1 |
| chr7.2 | CDS | 28375706 | 28375821 | 28375706 | ID=cds.MS.gene27768.t1;Parent=MS.gene27768.t1 |
| Gene Sequence |
| Protein sequence |
