Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59949.t1 | XP_003609355.1 | 92.2 | 358 | 24 | 1 | 1 | 358 | 1 | 354 | 7.00E-101 | 377.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59949.t1 | Q9XI36 | 64.0 | 86 | 30 | 1 | 21 | 105 | 5 | 90 | 5.3e-25 | 116.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59949.t1 | G7JE44 | 92.2 | 358 | 24 | 1 | 1 | 358 | 1 | 354 | 5.0e-101 | 377.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene59949 | 0.802219 | 6.22E-49 | -1.69E-46 |
| MS.gene049159 | MS.gene59949 | 0.885318 | 9.02E-72 | -1.69E-46 |
| MS.gene049435 | MS.gene59949 | 0.834564 | 2.79E-56 | -1.69E-46 |
| MS.gene049452 | MS.gene59949 | 0.801895 | 7.26E-49 | -1.69E-46 |
| MS.gene049501 | MS.gene59949 | 0.815335 | 9.74E-52 | -1.69E-46 |
| MS.gene049821 | MS.gene59949 | 0.822053 | 2.91E-53 | -1.69E-46 |
| MS.gene049850 | MS.gene59949 | 0.831399 | 1.71E-55 | -1.69E-46 |
| MS.gene050020 | MS.gene59949 | 0.824037 | 1.00E-53 | -1.69E-46 |
| MS.gene050156 | MS.gene59949 | 0.807896 | 4.04E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene59949 | 0.827515 | 1.50E-54 | -1.69E-46 |
| MS.gene050227 | MS.gene59949 | 0.816115 | 6.53E-52 | -1.69E-46 |
| MS.gene050228 | MS.gene59949 | 0.826866 | 2.14E-54 | -1.69E-46 |
| MS.gene050303 | MS.gene59949 | 0.812983 | 3.22E-51 | -1.69E-46 |
| MS.gene050438 | MS.gene59949 | 0.801249 | 9.84E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene59949 | 0.887207 | 1.75E-72 | -1.69E-46 |
| MS.gene050605 | MS.gene59949 | 0.837203 | 5.97E-57 | -1.69E-46 |
| MS.gene050623 | MS.gene59949 | -0.857299 | 1.79E-62 | -1.69E-46 |
| MS.gene050680 | MS.gene59949 | 0.818109 | 2.33E-52 | -1.69E-46 |
| MS.gene050719 | MS.gene59949 | 0.827936 | 1.19E-54 | -1.69E-46 |
| MS.gene050721 | MS.gene59949 | 0.828564 | 8.38E-55 | -1.69E-46 |
| MS.gene050724 | MS.gene59949 | 0.83457 | 2.78E-56 | -1.69E-46 |
| MS.gene050750 | MS.gene59949 | 0.822175 | 2.73E-53 | -1.69E-46 |
| MS.gene050759 | MS.gene59949 | 0.842275 | 2.86E-58 | -1.69E-46 |
| MS.gene050762 | MS.gene59949 | 0.833459 | 5.27E-56 | -1.69E-46 |
| MS.gene050763 | MS.gene59949 | 0.832502 | 9.11E-56 | -1.69E-46 |
| MS.gene050780 | MS.gene59949 | 0.809612 | 1.74E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene59949 | 0.810506 | 1.11E-50 | -1.69E-46 |
| MS.gene050815 | MS.gene59949 | 0.860536 | 1.93E-63 | -1.69E-46 |
| MS.gene050826 | MS.gene59949 | 0.831218 | 1.89E-55 | -1.69E-46 |
| MS.gene050844 | MS.gene59949 | 0.820457 | 6.79E-53 | -1.69E-46 |
| MS.gene050953 | MS.gene59949 | 0.822527 | 2.26E-53 | -1.69E-46 |
| MS.gene050962 | MS.gene59949 | 0.834012 | 3.83E-56 | -1.69E-46 |
| MS.gene051180 | MS.gene59949 | 0.8055 | 1.30E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene59949 | 0.8167 | 4.83E-52 | -1.69E-46 |
| MS.gene051243 | MS.gene59949 | 0.82984 | 4.11E-55 | -1.69E-46 |
| MS.gene051247 | MS.gene59949 | 0.811977 | 5.34E-51 | -1.69E-46 |
| MS.gene051265 | MS.gene59949 | 0.811006 | 8.69E-51 | -1.69E-46 |
| MS.gene051328 | MS.gene59949 | 0.832431 | 9.49E-56 | -1.69E-46 |
| MS.gene051344 | MS.gene59949 | 0.818425 | 1.97E-52 | -1.69E-46 |
| MS.gene051719 | MS.gene59949 | 0.803768 | 2.98E-49 | -1.69E-46 |
| MS.gene051800 | MS.gene59949 | 0.806561 | 7.75E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene59949 | 0.81013 | 1.34E-50 | -1.69E-46 |
| MS.gene052012 | MS.gene59949 | 0.874113 | 8.71E-68 | -1.69E-46 |
| MS.gene052020 | MS.gene59949 | 0.828075 | 1.10E-54 | -1.69E-46 |
| MS.gene05215 | MS.gene59949 | 0.824004 | 1.02E-53 | -1.69E-46 |
| MS.gene052323 | MS.gene59949 | 0.821193 | 4.60E-53 | -1.69E-46 |
| MS.gene052333 | MS.gene59949 | 0.80745 | 5.02E-50 | -1.69E-46 |
| MS.gene052384 | MS.gene59949 | 0.80878 | 2.62E-50 | -1.69E-46 |
| MS.gene052426 | MS.gene59949 | 0.814805 | 1.28E-51 | -1.69E-46 |
| MS.gene052516 | MS.gene59949 | 0.815157 | 1.07E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene59949 | 0.813476 | 2.51E-51 | -1.69E-46 |
| MS.gene052611 | MS.gene59949 | 0.823184 | 1.59E-53 | -1.69E-46 |
| MS.gene052665 | MS.gene59949 | 0.812932 | 3.30E-51 | -1.69E-46 |
| MS.gene052773 | MS.gene59949 | 0.824101 | 9.69E-54 | -1.69E-46 |
| MS.gene052863 | MS.gene59949 | 0.853142 | 2.90E-61 | -1.69E-46 |
| MS.gene05288 | MS.gene59949 | 0.818332 | 2.07E-52 | -1.69E-46 |
| MS.gene052896 | MS.gene59949 | 0.835899 | 1.28E-56 | -1.69E-46 |
| MS.gene053008 | MS.gene59949 | 0.889543 | 2.20E-73 | -1.69E-46 |
| MS.gene053074 | MS.gene59949 | 0.828429 | 9.04E-55 | -1.69E-46 |
| MS.gene053080 | MS.gene59949 | 0.800493 | 1.40E-48 | -1.69E-46 |
| MS.gene053166 | MS.gene59949 | 0.821719 | 3.48E-53 | -1.69E-46 |
| MS.gene053226 | MS.gene59949 | 0.836679 | 8.13E-57 | -1.69E-46 |
| MS.gene054139 | MS.gene59949 | 0.801665 | 8.09E-49 | -1.69E-46 |
| MS.gene05414 | MS.gene59949 | 0.810192 | 1.30E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene59949 | 0.818929 | 1.52E-52 | -1.69E-46 |
| MS.gene054236 | MS.gene59949 | 0.829867 | 4.05E-55 | -1.69E-46 |
| MS.gene054291 | MS.gene59949 | -0.80423 | 2.39E-49 | -1.69E-46 |
| MS.gene054379 | MS.gene59949 | 0.827413 | 1.59E-54 | -1.69E-46 |
| MS.gene054405 | MS.gene59949 | 0.815272 | 1.01E-51 | -1.69E-46 |
| MS.gene054433 | MS.gene59949 | 0.844182 | 8.86E-59 | -1.69E-46 |
| MS.gene054467 | MS.gene59949 | 0.82706 | 1.93E-54 | -1.69E-46 |
| MS.gene054472 | MS.gene59949 | 0.84585 | 3.14E-59 | -1.69E-46 |
| MS.gene054559 | MS.gene59949 | 0.808428 | 3.11E-50 | -1.69E-46 |
| MS.gene054596 | MS.gene59949 | 0.807537 | 4.81E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene59949 | 0.807024 | 6.18E-50 | -1.69E-46 |
| MS.gene054657 | MS.gene59949 | 0.80574 | 1.15E-49 | -1.69E-46 |
| MS.gene054658 | MS.gene59949 | 0.842543 | 2.43E-58 | -1.69E-46 |
| MS.gene05468 | MS.gene59949 | 0.818113 | 2.32E-52 | -1.69E-46 |
| MS.gene054775 | MS.gene59949 | 0.834752 | 2.50E-56 | -1.69E-46 |
| MS.gene054994 | MS.gene59949 | 0.821793 | 3.34E-53 | -1.69E-46 |
| MS.gene05510 | MS.gene59949 | 0.849299 | 3.54E-60 | -1.69E-46 |
| MS.gene05517 | MS.gene59949 | 0.85841 | 8.40E-63 | -1.69E-46 |
| MS.gene055222 | MS.gene59949 | 0.8252 | 5.34E-54 | -1.69E-46 |
| MS.gene055227 | MS.gene59949 | 0.801845 | 7.43E-49 | -1.69E-46 |
| MS.gene055356 | MS.gene59949 | 0.812704 | 3.71E-51 | -1.69E-46 |
| MS.gene055358 | MS.gene59949 | 0.820121 | 8.11E-53 | -1.69E-46 |
| MS.gene055466 | MS.gene59949 | 0.81687 | 4.43E-52 | -1.69E-46 |
| MS.gene055512 | MS.gene59949 | 0.811617 | 6.40E-51 | -1.69E-46 |
| MS.gene055608 | MS.gene59949 | 0.812278 | 4.59E-51 | -1.69E-46 |
| MS.gene055623 | MS.gene59949 | 0.845814 | 3.21E-59 | -1.69E-46 |
| MS.gene055701 | MS.gene59949 | 0.832959 | 7.02E-56 | -1.69E-46 |
| MS.gene055818 | MS.gene59949 | 0.863343 | 2.66E-64 | -1.69E-46 |
| MS.gene055926 | MS.gene59949 | 0.85749 | 1.58E-62 | -1.69E-46 |
| MS.gene05604 | MS.gene59949 | 0.826383 | 2.80E-54 | -1.69E-46 |
| MS.gene056173 | MS.gene59949 | 0.831694 | 1.44E-55 | -1.69E-46 |
| MS.gene056174 | MS.gene59949 | 0.805479 | 1.31E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene59949 | 0.820749 | 5.82E-53 | -1.69E-46 |
| MS.gene056552 | MS.gene59949 | 0.808488 | 3.02E-50 | -1.69E-46 |
| MS.gene056595 | MS.gene59949 | 0.80085 | 1.19E-48 | -1.69E-46 |
| MS.gene056760 | MS.gene59949 | 0.815733 | 7.95E-52 | -1.69E-46 |
| MS.gene057060 | MS.gene59949 | 0.819415 | 1.18E-52 | -1.69E-46 |
| MS.gene057140 | MS.gene59949 | 0.813743 | 2.19E-51 | -1.69E-46 |
| MS.gene057444 | MS.gene59949 | 0.801879 | 7.31E-49 | -1.69E-46 |
| MS.gene05761 | MS.gene59949 | 0.811274 | 7.60E-51 | -1.69E-46 |
| MS.gene057693 | MS.gene59949 | 0.859527 | 3.89E-63 | -1.69E-46 |
| MS.gene057869 | MS.gene59949 | 0.816229 | 6.16E-52 | -1.69E-46 |
| MS.gene057915 | MS.gene59949 | 0.852897 | 3.41E-61 | -1.69E-46 |
| MS.gene058084 | MS.gene59949 | 0.818087 | 2.35E-52 | -1.69E-46 |
| MS.gene058146 | MS.gene59949 | 0.856249 | 3.66E-62 | -1.69E-46 |
| MS.gene058168 | MS.gene59949 | 0.820474 | 6.73E-53 | -1.69E-46 |
| MS.gene058399 | MS.gene59949 | 0.836035 | 1.18E-56 | -1.69E-46 |
| MS.gene05847 | MS.gene59949 | 0.804451 | 2.15E-49 | -1.69E-46 |
| MS.gene058548 | MS.gene59949 | 0.828659 | 7.95E-55 | -1.69E-46 |
| MS.gene058549 | MS.gene59949 | 0.832827 | 7.57E-56 | -1.69E-46 |
| MS.gene058595 | MS.gene59949 | 0.82722 | 1.76E-54 | -1.69E-46 |
| MS.gene058625 | MS.gene59949 | 0.813558 | 2.41E-51 | -1.69E-46 |
| MS.gene058636 | MS.gene59949 | 0.816463 | 5.46E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene59949 | 0.80555 | 1.26E-49 | -1.69E-46 |
| MS.gene059006 | MS.gene59949 | 0.80747 | 4.98E-50 | -1.69E-46 |
| MS.gene059151 | MS.gene59949 | 0.800306 | 1.53E-48 | -1.69E-46 |
| MS.gene059161 | MS.gene59949 | 0.852262 | 5.18E-61 | -1.69E-46 |
| MS.gene059249 | MS.gene59949 | 0.824398 | 8.25E-54 | -1.69E-46 |
| MS.gene059283 | MS.gene59949 | 0.840601 | 7.88E-58 | -1.69E-46 |
| MS.gene059569 | MS.gene59949 | 0.810904 | 9.14E-51 | -1.69E-46 |
| MS.gene059607 | MS.gene59949 | 0.80124 | 9.89E-49 | -1.69E-46 |
| MS.gene059609 | MS.gene59949 | 0.846225 | 2.48E-59 | -1.69E-46 |
| MS.gene059725 | MS.gene59949 | 0.834745 | 2.51E-56 | -1.69E-46 |
| MS.gene05979 | MS.gene59949 | 0.842249 | 2.90E-58 | -1.69E-46 |
| MS.gene059842 | MS.gene59949 | 0.867344 | 1.47E-65 | -1.69E-46 |
| MS.gene059937 | MS.gene59949 | 0.800043 | 1.73E-48 | -1.69E-46 |
| MS.gene060011 | MS.gene59949 | 0.81936 | 1.21E-52 | -1.69E-46 |
| MS.gene060137 | MS.gene59949 | -0.833637 | 4.76E-56 | -1.69E-46 |
| MS.gene060296 | MS.gene59949 | 0.816054 | 6.74E-52 | -1.69E-46 |
| MS.gene060310 | MS.gene59949 | 0.810393 | 1.18E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene59949 | 0.852201 | 5.39E-61 | -1.69E-46 |
| MS.gene060429 | MS.gene59949 | 0.80971 | 1.65E-50 | -1.69E-46 |
| MS.gene06052 | MS.gene59949 | 0.805892 | 1.07E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene59949 | 0.810492 | 1.12E-50 | -1.69E-46 |
| MS.gene060637 | MS.gene59949 | 0.819653 | 1.04E-52 | -1.69E-46 |
| MS.gene060683 | MS.gene59949 | 0.859229 | 4.78E-63 | -1.69E-46 |
| MS.gene060685 | MS.gene59949 | 0.860222 | 2.40E-63 | -1.69E-46 |
| MS.gene060802 | MS.gene59949 | 0.919797 | 2.87E-87 | -1.69E-46 |
| MS.gene060803 | MS.gene59949 | 0.993859 | 9.48E-203 | -1.69E-46 |
| MS.gene060907 | MS.gene59949 | 0.801259 | 9.80E-49 | -1.69E-46 |
| MS.gene060998 | MS.gene59949 | 0.84392 | 1.04E-58 | -1.69E-46 |
| MS.gene061040 | MS.gene59949 | -0.800576 | 1.35E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59949.t1 | MTR_4g114770 | 92.179 | 358 | 24 | 1 | 1 | 358 | 1 | 354 | 0.0 | 608 |
| MS.gene59949.t1 | MTR_4g114770 | 91.615 | 322 | 23 | 1 | 37 | 358 | 15 | 332 | 0.0 | 563 |
| MS.gene59949.t1 | MTR_0339s0010 | 91.589 | 321 | 23 | 1 | 38 | 358 | 1 | 317 | 0.0 | 562 |
| MS.gene59949.t1 | MTR_0339s0020 | 89.911 | 337 | 16 | 3 | 1 | 337 | 1 | 319 | 0.0 | 506 |
| MS.gene59949.t1 | MTR_4g114785 | 91.262 | 206 | 14 | 1 | 1 | 206 | 1 | 202 | 8.69e-128 | 365 |
| MS.gene59949.t1 | MTR_6g060860 | 60.843 | 166 | 61 | 4 | 1 | 165 | 1 | 163 | 3.80e-57 | 184 |
| MS.gene59949.t1 | MTR_6g060860 | 71.200 | 125 | 35 | 1 | 1 | 125 | 42 | 165 | 2.93e-56 | 182 |
| MS.gene59949.t1 | MTR_6g060845 | 65.248 | 141 | 45 | 2 | 1 | 138 | 1 | 140 | 4.55e-56 | 180 |
| MS.gene59949.t1 | MTR_6g060685 | 70.400 | 125 | 36 | 1 | 1 | 125 | 42 | 165 | 9.95e-55 | 179 |
| MS.gene59949.t1 | MTR_6g060845 | 61.538 | 104 | 36 | 2 | 38 | 138 | 22 | 124 | 1.39e-37 | 131 |
| MS.gene59949.t1 | MTR_6g052050 | 66.292 | 89 | 28 | 1 | 37 | 125 | 27 | 113 | 8.26e-35 | 124 |
| MS.gene59949.t1 | MTR_4g010210 | 66.667 | 84 | 26 | 2 | 37 | 119 | 2 | 84 | 6.08e-30 | 118 |
| MS.gene59949.t1 | MTR_6g466310 | 51.899 | 79 | 34 | 1 | 67 | 141 | 1 | 79 | 1.79e-17 | 77.0 |
| MS.gene59949.t1 | MTR_6g465040 | 51.899 | 79 | 34 | 1 | 67 | 141 | 1 | 79 | 1.79e-17 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59949.t1 | AT1G15340 | 59.813 | 107 | 40 | 3 | 21 | 126 | 5 | 109 | 9.00e-36 | 134 |
| MS.gene59949.t1 | AT3G15790 | 59.821 | 112 | 41 | 3 | 18 | 127 | 2 | 111 | 8.25e-35 | 128 |
| MS.gene59949.t1 | AT3G15790 | 59.821 | 112 | 41 | 3 | 18 | 127 | 2 | 111 | 8.25e-35 | 128 |
| MS.gene59949.t1 | AT3G15790 | 59.821 | 112 | 41 | 3 | 18 | 127 | 2 | 111 | 8.25e-35 | 128 |
| MS.gene59949.t1 | AT1G15340 | 61.538 | 52 | 20 | 0 | 21 | 72 | 5 | 56 | 5.44e-18 | 84.3 |
Find 94 sgRNAs with CRISPR-Local
Find 253 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATTCTCGATGATCTTCT+TGG | 0.243354 | 8.3:+12632626 | None:intergenic |
| CAATCAAATTCCGATATGTT+TGG | 0.322423 | 8.3:+12632665 | None:intergenic |
| GACTTTCTGCTACGTTTCTT+AGG | 0.330344 | 8.3:+12632557 | None:intergenic |
| TCCATCTGGTTGGACCAAAA+AGG | 0.337926 | 8.3:-12634946 | MS.gene59949:intron |
| CGGAATTTGATTGGGGCACT+GGG | 0.341266 | 8.3:-12632655 | MS.gene59949:CDS |
| ACGAAACAAGATGGTGGATC+TGG | 0.355890 | 8.3:-12632044 | MS.gene59949:CDS |
| CAAACATATCGGAATTTGAT+TGG | 0.360294 | 8.3:-12632664 | MS.gene59949:CDS |
| GTCTGGAGTTGTTCAGAATA+AGG | 0.361170 | 8.3:-12632255 | MS.gene59949:CDS |
| TCGGAATTTGATTGGGGCAC+TGG | 0.370091 | 8.3:-12632656 | MS.gene59949:CDS |
| GGTGCTGTCGGTGCAGCTGC+AGG | 0.374683 | 8.3:-12635005 | MS.gene59949:CDS |
| TCCAACGAAACAGGCTCTTC+TGG | 0.378309 | 8.3:+12634978 | None:intergenic |
| TCTTGCTTTGTCTCCTCTGC+TGG | 0.384252 | 8.3:+12632212 | None:intergenic |
| AATCAAATTCCGATATGTTT+GGG | 0.391168 | 8.3:+12632666 | None:intergenic |
| AAACATATCGGAATTTGATT+GGG | 0.399027 | 8.3:-12632663 | MS.gene59949:CDS |
| TCCTGCTTTGTCTCCTCCGC+TGG | 0.406584 | 8.3:+12632134 | None:intergenic |
| AGTAGTTTCTCCAGGTTGAA+TGG | 0.415859 | 8.3:+12632367 | None:intergenic |
| GATCCGTACCAAAAGGCATT+TGG | 0.420195 | 8.3:-12632714 | MS.gene59949:CDS |
| TCAGTTGAGAAGGAAGGTTC+TGG | 0.420268 | 8.3:-12635026 | MS.gene59949:CDS |
| TCTTGTTTCGTCTCTTCCAC+TGG | 0.422030 | 8.3:+12632056 | None:intergenic |
| TCTTGTCGCGTCTTTCTCCT+TGG | 0.423678 | 8.3:+12631914 | None:intergenic |
| AACAGGATCACCCGTGAGGC+TGG | 0.424398 | 8.3:-12631945 | MS.gene59949:CDS |
| ACTTGTTTCGTCTCCTCCAC+TGG | 0.425405 | 8.3:+12632095 | None:intergenic |
| GACAAAGGAGCTGAGGGGTC+TGG | 0.432101 | 8.3:-12632272 | MS.gene59949:CDS |
| ATTGTGTTCACTTCACCAAC+AGG | 0.434194 | 8.3:-12632743 | MS.gene59949:CDS |
| GCAGGTAGCTCCAACGAAAC+AGG | 0.435285 | 8.3:+12634969 | None:intergenic |
| AAAATAAAGAGGAAGATAAC+AGG | 0.438541 | 8.3:-12631962 | MS.gene59949:CDS |
| AATAAGGATGAAGAAAAGAT+TGG | 0.442381 | 8.3:-12632239 | MS.gene59949:CDS |
| TTGGAGCTACCTGCTCCATC+TGG | 0.447780 | 8.3:-12634960 | MS.gene59949:CDS |
| CGAAACAAGATGGTGGATCT+GGG | 0.448304 | 8.3:-12632043 | MS.gene59949:CDS |
| GCAAGAAGCTGGCGAAACTA+AGG | 0.450556 | 8.3:-12632474 | MS.gene59949:CDS |
| ACAAAGCAAGAAGAAAAGAT+TGG | 0.458501 | 8.3:-12632200 | MS.gene59949:CDS |
| TAACGGTGGCCCAAACATAT+CGG | 0.461224 | 8.3:-12632675 | MS.gene59949:CDS |
| CAAATCTCCATCAGCAGTGT+TGG | 0.465617 | 8.3:+12632319 | None:intergenic |
| ACTAAGCAAAACGAAAAGAT+TGG | 0.465779 | 8.3:-12632161 | MS.gene59949:CDS |
| TGGTTTCTCCTCCAGCCTCA+CGG | 0.470523 | 8.3:+12631934 | None:intergenic |
| GGTTTCTCCTCCAGCCTCAC+GGG | 0.470641 | 8.3:+12631935 | None:intergenic |
| GAATCAGAGGTGACTGTGAA+TGG | 0.479774 | 8.3:-12631846 | MS.gene59949:CDS |
| GCAATATAAGTAGTTTCTCC+AGG | 0.485009 | 8.3:+12632359 | None:intergenic |
| TGCTGAGAAAACGGCTGAAG+TGG | 0.493970 | 8.3:-12631991 | MS.gene59949:CDS |
| TGGCGAAACTAAGGATGATA+AGG | 0.496710 | 8.3:-12632465 | MS.gene59949:CDS |
| GGGAAATCCAACACTGCTGA+TGG | 0.499797 | 8.3:-12632326 | MS.gene59949:CDS |
| GCCAGCGGAGGAGACAAAGC+AGG | 0.506408 | 8.3:-12632135 | MS.gene59949:CDS |
| AGCTACCTGCTCCATCTGGT+TGG | 0.512073 | 8.3:-12634956 | MS.gene59949:CDS |
| GAAAAGTATTTGAAAACTAA+CGG | 0.517809 | 8.3:-12632692 | MS.gene59949:CDS |
| TACTTATATTGCAAAGGATG+AGG | 0.518178 | 8.3:-12632348 | MS.gene59949:CDS |
| GTACGGATCTCCTCTCCTGT+TGG | 0.519310 | 8.3:+12632728 | None:intergenic |
| TGCCCCTACTGCTGAGAAAA+CGG | 0.519959 | 8.3:-12632000 | MS.gene59949:CDS |
| TTGGTCCAACCAGATGGAGC+AGG | 0.524315 | 8.3:+12634951 | None:intergenic |
| GACGTGGAAATGCAAGAAGC+TGG | 0.536719 | 8.3:-12632485 | MS.gene59949:CDS |
| GGATGATAAGGATGTAGAGC+CGG | 0.539111 | 8.3:-12632453 | MS.gene59949:CDS |
| GAGAGGAGATCCGTACCAAA+AGG | 0.541915 | 8.3:-12632721 | MS.gene59949:CDS |
| ACTTATATTGCAAAGGATGA+GGG | 0.544601 | 8.3:-12632347 | MS.gene59949:CDS |
| TAAGGATGTAGAGCCGGAAA+AGG | 0.552217 | 8.3:-12632447 | MS.gene59949:CDS |
| AGAAAAGATCGGACAGCCAG+TGG | 0.556644 | 8.3:-12632072 | MS.gene59949:CDS |
| ACCAGAAGAGCCTGTTTCGT+TGG | 0.564563 | 8.3:-12634979 | MS.gene59949:CDS |
| TTTCTGCTACGTTTCTTAGG+AGG | 0.568448 | 8.3:+12632560 | None:intergenic |
| ATCGACGACAAAGGAGCTGA+GGG | 0.572360 | 8.3:-12632278 | MS.gene59949:CDS |
| TTCAAAGAAAGAAGCTTCTG+AGG | 0.575578 | 8.3:-12632528 | MS.gene59949:CDS |
| AGCTTCTGAGGACGAAGCAG+AGG | 0.581963 | 8.3:-12632516 | MS.gene59949:CDS |
| ATCATCGAGAATTGTTGAGA+AGG | 0.584060 | 8.3:-12632618 | MS.gene59949:CDS |
| AGAAACTACTTATATTGCAA+AGG | 0.585396 | 8.3:-12632354 | MS.gene59949:CDS |
| GTTAAAGAGTCCATTCAACC+TGG | 0.588074 | 8.3:-12632377 | MS.gene59949:CDS |
| GGAAAAGATTGAACAGCCAG+TGG | 0.588335 | 8.3:-12632111 | MS.gene59949:CDS |
| AACATATCGGAATTTGATTG+GGG | 0.594084 | 8.3:-12632662 | MS.gene59949:CDS |
| GCGAGTTCAGTTGAGAAGGA+AGG | 0.595479 | 8.3:-12635032 | MS.gene59949:CDS |
| GAGAAAACGGCTGAAGTGGA+AGG | 0.605734 | 8.3:-12631987 | MS.gene59949:CDS |
| CTTATATTGCAAAGGATGAG+GGG | 0.609242 | 8.3:-12632346 | MS.gene59949:CDS |
| GTGGAAGAGACGAAACAAGA+TGG | 0.609428 | 8.3:-12632053 | MS.gene59949:CDS |
| AAGGAAGGTTCTGGTGCTGT+CGG | 0.610581 | 8.3:-12635017 | MS.gene59949:CDS |
| ACGAAACAAGTAGAAAAGAT+CGG | 0.611494 | 8.3:-12632083 | MS.gene59949:CDS |
| CGAAAAGATTGGACAGCCAG+CGG | 0.613646 | 8.3:-12632150 | MS.gene59949:CDS |
| AGCGGAGGAGACAAAGCAGG+AGG | 0.614310 | 8.3:-12632132 | MS.gene59949:CDS |
| GCACGATGAAGCAAACTACA+AGG | 0.616620 | 8.3:-12631889 | MS.gene59949:CDS |
| AGTGGAAGGCGAAAATAAAG+AGG | 0.617317 | 8.3:-12631973 | MS.gene59949:CDS |
| TATGAACAAGGCTGAATCAG+AGG | 0.619422 | 8.3:-12631859 | MS.gene59949:CDS |
| AGGATCACCCGTGAGGCTGG+AGG | 0.622567 | 8.3:-12631942 | MS.gene59949:CDS |
| AATGGCGAGTTCAGTTGAGA+AGG | 0.627741 | 8.3:-12635036 | MS.gene59949:CDS |
| TATCGACGACAAAGGAGCTG+AGG | 0.627859 | 8.3:-12632279 | MS.gene59949:CDS |
| CAAGGTTCATGATATGAACA+AGG | 0.632417 | 8.3:-12631871 | MS.gene59949:CDS |
| AAAGAGAATATCGACGACAA+AGG | 0.633629 | 8.3:-12632287 | MS.gene59949:CDS |
| GTTCACTTCACCAACAGGAG+AGG | 0.638059 | 8.3:-12632738 | MS.gene59949:CDS |
| AGCAGAGGAGACAAAAGACG+TGG | 0.647050 | 8.3:-12632501 | MS.gene59949:CDS |
| AAAGATTGGACTGCCAGCAG+AGG | 0.649175 | 8.3:-12632225 | MS.gene59949:CDS |
| GAAACAAGATGGTGGATCTG+GGG | 0.649794 | 8.3:-12632042 | MS.gene59949:CDS |
| AAAGATTGAACAGCCAGTGG+AGG | 0.649841 | 8.3:-12632108 | MS.gene59949:CDS |
| GAAGAGACGAAACAAGATGG+TGG | 0.653012 | 8.3:-12632050 | MS.gene59949:CDS |
| GAGAATTGTTGAGAAGGTCA+AGG | 0.659236 | 8.3:-12632612 | MS.gene59949:CDS |
| TGAGGCTGGAGGAGAAACCA+AGG | 0.668481 | 8.3:-12631931 | MS.gene59949:CDS |
| AAAGATTGGACAGCCAGCAG+AGG | 0.672505 | 8.3:-12632186 | MS.gene59949:CDS |
| AAAGATTGGACAGCCAGCGG+AGG | 0.683425 | 8.3:-12632147 | MS.gene59949:CDS |
| GGAATTTGATTGGGGCACTG+GGG | 0.689173 | 8.3:-12632654 | MS.gene59949:CDS |
| AAGTATTTGAAAACTAACGG+TGG | 0.726069 | 8.3:-12632689 | MS.gene59949:CDS |
| AGATAACAGGATCACCCGTG+AGG | 0.732047 | 8.3:-12631949 | MS.gene59949:CDS |
| TCGACGACAAAGGAGCTGAG+GGG | 0.744956 | 8.3:-12632277 | MS.gene59949:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTGTAATTTTAAATATT+TGG | - | chr8.3:12632439-12632458 | MS.gene59949:CDS | 10.0% |
| !! | GTCAGAAAATATTATAATAA+TGG | + | chr8.3:12633078-12633097 | None:intergenic | 15.0% |
| !! | TTTACTTCAAGTATTAAAAA+AGG | + | chr8.3:12633133-12633152 | None:intergenic | 15.0% |
| !!! | ATTTTAAATATTTGGTGAAA+TGG | - | chr8.3:12632447-12632466 | MS.gene59949:CDS | 15.0% |
| !!! | TTGTTTGAATTTTCAATTTT+AGG | - | chr8.3:12631963-12631982 | MS.gene59949:CDS | 15.0% |
| !!! | TTTTAAATATTTGGTGAAAT+GGG | - | chr8.3:12632448-12632467 | MS.gene59949:CDS | 15.0% |
| !!! | TTTTTTTTACAATGATAGAT+GGG | - | chr8.3:12632705-12632724 | MS.gene59949:CDS | 15.0% |
| !! | AAAAATGTAATAGTTAGACT+TGG | + | chr8.3:12632795-12632814 | None:intergenic | 20.0% |
| !! | AACAAAAATGAAGATAAGAA+GGG | - | chr8.3:12634458-12634477 | MS.gene59949:intron | 20.0% |
| !! | ATAGTTATTACACATTTACA+TGG | + | chr8.3:12633029-12633048 | None:intergenic | 20.0% |
| !! | ATTGTATAATACATAACTAG+AGG | - | chr8.3:12633323-12633342 | MS.gene59949:intron | 20.0% |
| !! | CATCTATCATTGTAAAAAAA+AGG | + | chr8.3:12632706-12632725 | None:intergenic | 20.0% |
| !! | TAAAATTACAAAACCAAAGT+AGG | + | chr8.3:12632433-12632452 | None:intergenic | 20.0% |
| !! | TAACAAAAATGAAGATAAGA+AGG | - | chr8.3:12634457-12634476 | MS.gene59949:intron | 20.0% |
| !! | TCTTGTAAAAGTTAATAACT+TGG | - | chr8.3:12633988-12634007 | MS.gene59949:intron | 20.0% |
| !! | TTGTATAATACATAACTAGA+GGG | - | chr8.3:12633324-12633343 | MS.gene59949:intron | 20.0% |
| !!! | AAAAATTAGAACAACCTTTT+TGG | + | chr8.3:12631945-12631964 | None:intergenic | 20.0% |
| !!! | AATTTTTTGATTAAGAGAAG+AGG | - | chr8.3:12633866-12633885 | MS.gene59949:intron | 20.0% |
| !!! | CTTTTTTTTACAATGATAGA+TGG | - | chr8.3:12632704-12632723 | MS.gene59949:CDS | 20.0% |
| !!! | GAAAAGTATTTGAAAACTAA+CGG | - | chr8.3:12634182-12634201 | MS.gene59949:intron | 20.0% |
| !!! | GATTTTGGTTTTCATAATTA+GGG | - | chr8.3:12632082-12632101 | MS.gene59949:CDS | 20.0% |
| !!! | TATTAACTTTTACAAGACTT+TGG | + | chr8.3:12633985-12634004 | None:intergenic | 20.0% |
| !!! | TGATTTTGGTTTTCATAATT+AGG | - | chr8.3:12632081-12632100 | MS.gene59949:CDS | 20.0% |
| !!! | TTTATAACATGCTTTGATTT+TGG | - | chr8.3:12632067-12632086 | MS.gene59949:CDS | 20.0% |
| !!! | TTTTAATTGAGTATTCTCAA+GGG | - | chr8.3:12633898-12633917 | MS.gene59949:intron | 20.0% |
| !!! | TTTTTAATTGAGTATTCTCA+AGG | - | chr8.3:12633897-12633916 | MS.gene59949:intron | 20.0% |
| ! | AAAATAAAGAGGAAGATAAC+AGG | - | chr8.3:12634912-12634931 | MS.gene59949:intron | 25.0% |
| ! | AAACATATCGGAATTTGATT+GGG | - | chr8.3:12634211-12634230 | MS.gene59949:intron | 25.0% |
| ! | AATAAGGATGAAGAAAAGAT+TGG | - | chr8.3:12634635-12634654 | MS.gene59949:intron | 25.0% |
| ! | AATCAAATTCCGATATGTTT+GGG | + | chr8.3:12634211-12634230 | None:intergenic | 25.0% |
| ! | AGAAACTACTTATATTGCAA+AGG | - | chr8.3:12634520-12634539 | MS.gene59949:intron | 25.0% |
| ! | GAAAAAATAGTGAGTTTGTA+TGG | + | chr8.3:12633280-12633299 | None:intergenic | 25.0% |
| ! | GTGTTTATTTGTTTGTTCTA+GGG | - | chr8.3:12632641-12632660 | MS.gene59949:CDS | 25.0% |
| ! | TGTATAATACATAACTAGAG+GGG | - | chr8.3:12633325-12633344 | MS.gene59949:intron | 25.0% |
| ! | TGTGTTTATTTGTTTGTTCT+AGG | - | chr8.3:12632640-12632659 | MS.gene59949:CDS | 25.0% |
| !! | AAGATTCATGTCTAAGATTT+GGG | - | chr8.3:12632173-12632192 | MS.gene59949:CDS | 25.0% |
| !! | TATATTTTCTTTCAAACACC+AGG | - | chr8.3:12632874-12632893 | MS.gene59949:intron | 25.0% |
| !! | TATTTTGTTCTCTGAATTTG+AGG | - | chr8.3:12632196-12632215 | MS.gene59949:CDS | 25.0% |
| !!! | AACACAATCTCATTTTTCTT+GGG | + | chr8.3:12634119-12634138 | None:intergenic | 25.0% |
| !!! | ACAAACTCACTATTTTTTCT+AGG | - | chr8.3:12633281-12633300 | MS.gene59949:intron | 25.0% |
| !!! | TAATTCTTTGATTTTCGTGT+TGG | - | chr8.3:12632020-12632039 | MS.gene59949:CDS | 25.0% |
| !!! | TTTTTGGTACATAGAAGAAA+TGG | - | chr8.3:12633700-12633719 | MS.gene59949:intron | 25.0% |
| AAAAAAGGCTGTTACATAGT+GGG | + | chr8.3:12633118-12633137 | None:intergenic | 30.0% | |
| AAAAAATCATTGCGATTGCA+TGG | + | chr8.3:12633186-12633205 | None:intergenic | 30.0% | |
| AAAAATCATTGCGATTGCAT+GGG | + | chr8.3:12633185-12633204 | None:intergenic | 30.0% | |
| AAAATATACTTGAGCCAGTA+GGG | + | chr8.3:12632862-12632881 | None:intergenic | 30.0% | |
| AACATATCGGAATTTGATTG+GGG | - | chr8.3:12634212-12634231 | MS.gene59949:intron | 30.0% | |
| AAGTATTTGAAAACTAACGG+TGG | - | chr8.3:12634185-12634204 | MS.gene59949:intron | 30.0% | |
| AATAGTTAGACTTGGATAAC+AGG | + | chr8.3:12632787-12632806 | None:intergenic | 30.0% | |
| ACAAAGCAAGAAGAAAAGAT+TGG | - | chr8.3:12634674-12634693 | MS.gene59949:intron | 30.0% | |
| ACGAAACAAGTAGAAAAGAT+CGG | - | chr8.3:12634791-12634810 | MS.gene59949:intron | 30.0% | |
| ACGGTATTTCTTAAATTGTG+AGG | - | chr8.3:12632291-12632310 | MS.gene59949:CDS | 30.0% | |
| ACTAAGCAAAACGAAAAGAT+TGG | - | chr8.3:12634713-12634732 | MS.gene59949:intron | 30.0% | |
| ACTTATATTGCAAAGGATGA+GGG | - | chr8.3:12634527-12634546 | MS.gene59949:intron | 30.0% | |
| AGTGAGTTTGTATGGAAATT+GGG | + | chr8.3:12633272-12633291 | None:intergenic | 30.0% | |
| ATGACCAAGAAACACAAAAA+TGG | + | chr8.3:12633497-12633516 | None:intergenic | 30.0% | |
| CAAACATATCGGAATTTGAT+TGG | - | chr8.3:12634210-12634229 | MS.gene59949:intron | 30.0% | |
| CAATCAAATTCCGATATGTT+TGG | + | chr8.3:12634212-12634231 | None:intergenic | 30.0% | |
| CCAAAAACAAAAAACACCAT+AGG | + | chr8.3:12633687-12633706 | None:intergenic | 30.0% | |
| GTATTATACAATAACCCAGA+GGG | + | chr8.3:12633315-12633334 | None:intergenic | 30.0% | |
| TAAAAAAGGCTGTTACATAG+TGG | + | chr8.3:12633119-12633138 | None:intergenic | 30.0% | |
| TACTTATATTGCAAAGGATG+AGG | - | chr8.3:12634526-12634545 | MS.gene59949:intron | 30.0% | |
| TAGTGAGTTTGTATGGAAAT+TGG | + | chr8.3:12633273-12633292 | None:intergenic | 30.0% | |
| TGAGGAATTGTATAGTTTCT+GGG | - | chr8.3:12632214-12632233 | MS.gene59949:CDS | 30.0% | |
| TGTATTATACAATAACCCAG+AGG | + | chr8.3:12633316-12633335 | None:intergenic | 30.0% | |
| TTGAGGAATTGTATAGTTTC+TGG | - | chr8.3:12632213-12632232 | MS.gene59949:CDS | 30.0% | |
| TTTGCTTAAAGTGTACATTG+TGG | - | chr8.3:12632389-12632408 | MS.gene59949:CDS | 30.0% | |
| ! | ACGACTTTTGTGCATTTTAT+AGG | - | chr8.3:12632567-12632586 | MS.gene59949:CDS | 30.0% |
| ! | ATACTTTTCCAAATGCCTTT+TGG | + | chr8.3:12634171-12634190 | None:intergenic | 30.0% |
| ! | ATTTTCTTGAGACAAACAGT+TGG | - | chr8.3:12633386-12633405 | MS.gene59949:intron | 30.0% |
| ! | CAAGATTCATGTCTAAGATT+TGG | - | chr8.3:12632172-12632191 | MS.gene59949:CDS | 30.0% |
| ! | GGTTTTCATAATTAGGGATT+TGG | - | chr8.3:12632088-12632107 | MS.gene59949:CDS | 30.0% |
| ! | TCATTGATCTTCTTTTCACT+TGG | - | chr8.3:12632515-12632534 | MS.gene59949:CDS | 30.0% |
| ! | TTGTTAACAACTTCCTTTTC+CGG | + | chr8.3:12634443-12634462 | None:intergenic | 30.0% |
| ! | TTTGTGCATTTTATAGGTCT+GGG | - | chr8.3:12632573-12632592 | MS.gene59949:CDS | 30.0% |
| ! | TTTTGTGCATTTTATAGGTC+TGG | - | chr8.3:12632572-12632591 | MS.gene59949:CDS | 30.0% |
| !! | GAACACAATCTCATTTTTCT+TGG | + | chr8.3:12634120-12634139 | None:intergenic | 30.0% |
| !! | GTGTTTGTTTTCTAAACGAT+AGG | - | chr8.3:12632742-12632761 | MS.gene59949:CDS | 30.0% |
| !!! | CCTATGGTGTTTTTTGTTTT+TGG | - | chr8.3:12633684-12633703 | MS.gene59949:intron | 30.0% |
| !!! | CTATTACTGCAGTTTTAGAT+TGG | - | chr8.3:12633442-12633461 | MS.gene59949:intron | 30.0% |
| !!! | TTTTTTGGAAAGAACTGCAA+AGG | + | chr8.3:12634086-12634105 | None:intergenic | 30.0% |
| AAAGAGAATATCGACGACAA+AGG | - | chr8.3:12634587-12634606 | MS.gene59949:intron | 35.0% | |
| ACAATTCTCGATGATCTTCT+TGG | + | chr8.3:12634251-12634270 | None:intergenic | 35.0% | |
| ACATAGAAGAAATGGCAAAG+TGG | - | chr8.3:12633708-12633727 | MS.gene59949:intron | 35.0% | |
| AGAAATACCGTCACGAAAAT+AGG | + | chr8.3:12632282-12632301 | None:intergenic | 35.0% | |
| ATACCCACATATAAGTCAGT+AGG | - | chr8.3:12632980-12632999 | MS.gene59949:intron | 35.0% | |
| ATCATCGAGAATTGTTGAGA+AGG | - | chr8.3:12634256-12634275 | MS.gene59949:intron | 35.0% | |
| ATGATACAAACAACTAGCTC+AGG | + | chr8.3:12632499-12632518 | None:intergenic | 35.0% | |
| ATTAACCTTGTTCAGTCTGA+AGG | + | chr8.3:12633603-12633622 | None:intergenic | 35.0% | |
| CAAGGTTCATGATATGAACA+AGG | - | chr8.3:12635003-12635022 | MS.gene59949:CDS | 35.0% | |
| CAGACTGAACAAGGTTAATT+TGG | - | chr8.3:12633604-12633623 | MS.gene59949:intron | 35.0% | |
| CAGTTCTTTCCAAAAAAGTC+AGG | - | chr8.3:12634089-12634108 | MS.gene59949:intron | 35.0% | |
| CATTTACATGGTAAGAAACG+TGG | + | chr8.3:12633017-12633036 | None:intergenic | 35.0% | |
| CTGAATGGAAGGATTAAAGA+GGG | - | chr8.3:12633568-12633587 | MS.gene59949:intron | 35.0% | |
| CTTATATTGCAAAGGATGAG+GGG | - | chr8.3:12634528-12634547 | MS.gene59949:intron | 35.0% | |
| GAAAATATACTTGAGCCAGT+AGG | + | chr8.3:12632863-12632882 | None:intergenic | 35.0% | |
| GAAATACCGTCACGAAAATA+GGG | + | chr8.3:12632281-12632300 | None:intergenic | 35.0% | |
| GCAAAAATGCCGAAATTGTT+AGG | + | chr8.3:12633770-12633789 | None:intergenic | 35.0% | |
| GCAATATAAGTAGTTTCTCC+AGG | + | chr8.3:12634518-12634537 | None:intergenic | 35.0% | |
| TACATTGTGGCTTACTCTTT+GGG | - | chr8.3:12632402-12632421 | MS.gene59949:CDS | 35.0% | |
| TACCCACATATAAGTCAGTA+GGG | - | chr8.3:12632981-12633000 | MS.gene59949:intron | 35.0% | |
| TTCAAAGAAAGAAGCTTCTG+AGG | - | chr8.3:12634346-12634365 | MS.gene59949:intron | 35.0% | |
| TTCACTTGGACTGTTAAACA+TGG | - | chr8.3:12632529-12632548 | MS.gene59949:CDS | 35.0% | |
| ! | AAGATCACATCAGGTTAGTT+AGG | + | chr8.3:12633244-12633263 | None:intergenic | 35.0% |
| ! | AGATCACATCAGGTTAGTTA+GGG | + | chr8.3:12633243-12633262 | None:intergenic | 35.0% |
| ! | ATAGGTCTGGGATTTACTAT+GGG | - | chr8.3:12632585-12632604 | MS.gene59949:CDS | 35.0% |
| ! | GTTAGGGGTTATGTTTTTCA+TGG | + | chr8.3:12633227-12633246 | None:intergenic | 35.0% |
| ! | TATAGGTCTGGGATTTACTA+TGG | - | chr8.3:12632584-12632603 | MS.gene59949:CDS | 35.0% |
| ! | TATTTTCTGACATTGTGCAC+TGG | - | chr8.3:12633087-12633106 | MS.gene59949:intron | 35.0% |
| ! | TCTTTGGGAATTTCCTACTT+TGG | - | chr8.3:12632417-12632436 | MS.gene59949:CDS | 35.0% |
| ! | TTTCCAAATGCCTTTTGGTA+CGG | + | chr8.3:12634166-12634185 | None:intergenic | 35.0% |
| !! | GTGTCCATTTTTGTGTTTCT+TGG | - | chr8.3:12633490-12633509 | MS.gene59949:intron | 35.0% |
| !!! | CTGCAGTTTTAGATTGGAAA+TGG | - | chr8.3:12633448-12633467 | MS.gene59949:intron | 35.0% |
| AAAAGCCTTCAGACTGAACA+AGG | - | chr8.3:12633595-12633614 | MS.gene59949:intron | 40.0% | |
| AAATGCCGAAATTGTTAGGC+CGG | + | chr8.3:12633766-12633785 | None:intergenic | 40.0% | |
| AACAAACACTATACCCCATG+AGG | + | chr8.3:12632731-12632750 | None:intergenic | 40.0% | |
| ACTGTGTTCAACATACCATG+TGG | + | chr8.3:12632942-12632961 | None:intergenic | 40.0% | |
| AGAATCTTGAAAACCCTAGC+AGG | + | chr8.3:12632250-12632269 | None:intergenic | 40.0% | |
| AGTGCCTAGTTAAACACCAT+AGG | + | chr8.3:12633818-12633837 | None:intergenic | 40.0% | |
| AGTGGAAGGCGAAAATAAAG+AGG | - | chr8.3:12634901-12634920 | MS.gene59949:intron | 40.0% | |
| ATTGTGTTCACTTCACCAAC+AGG | - | chr8.3:12634131-12634150 | MS.gene59949:intron | 40.0% | |
| CCTCTTTAATCCTTCCATTC+AGG | + | chr8.3:12633570-12633589 | None:intergenic | 40.0% | |
| CCTGAATGGAAGGATTAAAG+AGG | - | chr8.3:12633567-12633586 | MS.gene59949:intron | 40.0% | |
| GACTTTCTGCTACGTTTCTT+AGG | + | chr8.3:12634320-12634339 | None:intergenic | 40.0% | |
| GAGAATTGTTGAGAAGGTCA+AGG | - | chr8.3:12634262-12634281 | MS.gene59949:intron | 40.0% | |
| GCATGGGTTTGTAAAACTCA+GGG | + | chr8.3:12633169-12633188 | None:intergenic | 40.0% | |
| GTACATTGTGGCTTACTCTT+TGG | - | chr8.3:12632401-12632420 | MS.gene59949:CDS | 40.0% | |
| GTTAAAGAGTCCATTCAACC+TGG | - | chr8.3:12634497-12634516 | MS.gene59949:intron | 40.0% | |
| TAGAAGAAATGGCAAAGTGG+AGG | - | chr8.3:12633711-12633730 | MS.gene59949:intron | 40.0% | |
| TATGAACAAGGCTGAATCAG+AGG | - | chr8.3:12635015-12635034 | MS.gene59949:CDS | 40.0% | |
| TGCATGGGTTTGTAAAACTC+AGG | + | chr8.3:12633170-12633189 | None:intergenic | 40.0% | |
| TGGCGAAACTAAGGATGATA+AGG | - | chr8.3:12634409-12634428 | MS.gene59949:intron | 40.0% | |
| TTCTTGGTCATTATGAGCCA+TGG | - | chr8.3:12633506-12633525 | MS.gene59949:intron | 40.0% | |
| TTTCTGCTACGTTTCTTAGG+AGG | + | chr8.3:12634317-12634336 | None:intergenic | 40.0% | |
| ! | AGTAGTTTCTCCAGGTTGAA+TGG | + | chr8.3:12634510-12634529 | None:intergenic | 40.0% |
| ! | GATCACATCAGGTTAGTTAG+GGG | + | chr8.3:12633242-12633261 | None:intergenic | 40.0% |
| ! | GTCTGGAGTTGTTCAGAATA+AGG | - | chr8.3:12634619-12634638 | MS.gene59949:intron | 40.0% |
| !! | AACTAGAGGGGCATCTATAT+TGG | - | chr8.3:12633337-12633356 | MS.gene59949:intron | 40.0% |
| !! | CTCCCTACTGACTTATATGT+GGG | + | chr8.3:12632986-12633005 | None:intergenic | 40.0% |
| !! | TCAGTAAGAGAGTACTAGCA+GGG | + | chr8.3:12633632-12633651 | None:intergenic | 40.0% |
| !! | TTCAGTAAGAGAGTACTAGC+AGG | + | chr8.3:12633633-12633652 | None:intergenic | 40.0% |
| !! | TTCTTAGGAGGCTCACTTTT+TGG | + | chr8.3:12634305-12634324 | None:intergenic | 40.0% |
| !!! | TTGGGTGTTCCTGACTTTTT+TGG | + | chr8.3:12634101-12634120 | None:intergenic | 40.0% |
| AAAGATTGAACAGCCAGTGG+AGG | - | chr8.3:12634766-12634785 | MS.gene59949:intron | 45.0% | |
| AATGATAGATGGGCCTCATG+GGG | - | chr8.3:12632715-12632734 | MS.gene59949:CDS | 45.0% | |
| ACAATGATAGATGGGCCTCA+TGG | - | chr8.3:12632713-12632732 | MS.gene59949:CDS | 45.0% | |
| CAAATCTCCATCAGCAGTGT+TGG | + | chr8.3:12634558-12634577 | None:intergenic | 45.0% | |
| CAATGATAGATGGGCCTCAT+GGG | - | chr8.3:12632714-12632733 | MS.gene59949:CDS | 45.0% | |
| CCAATAAGTCCTAGCTCAAC+AGG | + | chr8.3:12633792-12633811 | None:intergenic | 45.0% | |
| CCACATATAAGTCAGTAGGG+AGG | - | chr8.3:12632984-12633003 | MS.gene59949:intron | 45.0% | |
| CCTGTTGAGCTAGGACTTAT+TGG | - | chr8.3:12633789-12633808 | MS.gene59949:intron | 45.0% | |
| CTTCCATTCAGGCTATACCT+GGG | + | chr8.3:12633559-12633578 | None:intergenic | 45.0% | |
| GAAGAGACGAAACAAGATGG+TGG | - | chr8.3:12634824-12634843 | MS.gene59949:intron | 45.0% | |
| GAATCAGAGGTGACTGTGAA+TGG | - | chr8.3:12635028-12635047 | MS.gene59949:CDS | 45.0% | |
| GACGCCTATGGTGTTTAACT+AGG | - | chr8.3:12633811-12633830 | MS.gene59949:intron | 45.0% | |
| GCACGATGAAGCAAACTACA+AGG | - | chr8.3:12634985-12635004 | MS.gene59949:CDS | 45.0% | |
| GCACTGAAGACAAGTATCCA+TGG | + | chr8.3:12633526-12633545 | None:intergenic | 45.0% | |
| GGAAAAGATTGAACAGCCAG+TGG | - | chr8.3:12634763-12634782 | MS.gene59949:intron | 45.0% | |
| GGATGATAAGGATGTAGAGC+CGG | - | chr8.3:12634421-12634440 | MS.gene59949:intron | 45.0% | |
| GTGGAAGAGACGAAACAAGA+TGG | - | chr8.3:12634821-12634840 | MS.gene59949:intron | 45.0% | |
| TAACGGTGGCCCAAACATAT+CGG | - | chr8.3:12634199-12634218 | MS.gene59949:intron | 45.0% | |
| TAAGGATGTAGAGCCGGAAA+AGG | - | chr8.3:12634427-12634446 | MS.gene59949:intron | 45.0% | |
| TAGGACTTATTGGACGCCTA+TGG | - | chr8.3:12633799-12633818 | MS.gene59949:intron | 45.0% | |
| TATACTTGAGCCAGTAGGGA+TGG | + | chr8.3:12632858-12632877 | None:intergenic | 45.0% | |
| TCAAACACCAGGCTTAGTGT+TGG | - | chr8.3:12632885-12632904 | MS.gene59949:intron | 45.0% | |
| TCAGTTGAGAAGGAAGGTTC+TGG | - | chr8.3:12631848-12631867 | MS.gene59949:CDS | 45.0% | |
| TCCATCTGGTTGGACCAAAA+AGG | - | chr8.3:12631928-12631947 | MS.gene59949:CDS | 45.0% | |
| TGCTAGCTCATAACTGCCTA+TGG | - | chr8.3:12633668-12633687 | MS.gene59949:intron | 45.0% | |
| TGGGAACTGAAGATCACATC+AGG | + | chr8.3:12633253-12633272 | None:intergenic | 45.0% | |
| TTGCTAACCAACACTAAGCC+TGG | + | chr8.3:12632895-12632914 | None:intergenic | 45.0% | |
| ! | CTGTGTCCCTATTTTCGTGA+CGG | - | chr8.3:12632272-12632291 | MS.gene59949:CDS | 45.0% |
| ! | GCATTTTTGCCTGTTGAGCT+AGG | - | chr8.3:12633780-12633799 | MS.gene59949:intron | 45.0% |
| ! | GTCTGGGATTTACTATGGGA+TGG | - | chr8.3:12632589-12632608 | MS.gene59949:CDS | 45.0% |
| ! | TCTTGTTTCGTCTCTTCCAC+TGG | + | chr8.3:12634821-12634840 | None:intergenic | 45.0% |
| ! | TTTTGCTTAGTCTCCTCTGC+TGG | + | chr8.3:12634704-12634723 | None:intergenic | 45.0% |
| !! | ACCTTTTTGGTCCAACCAGA+TGG | + | chr8.3:12631932-12631951 | None:intergenic | 45.0% |
| !! | ACGAAACAAGATGGTGGATC+TGG | - | chr8.3:12634830-12634849 | MS.gene59949:intron | 45.0% |
| !! | CCTCCCTACTGACTTATATG+TGG | + | chr8.3:12632987-12633006 | None:intergenic | 45.0% |
| !! | CGAAACAAGATGGTGGATCT+GGG | - | chr8.3:12634831-12634850 | MS.gene59949:intron | 45.0% |
| !! | GAAACAAGATGGTGGATCTG+GGG | - | chr8.3:12634832-12634851 | MS.gene59949:intron | 45.0% |
| !! | GATCCGTACCAAAAGGCATT+TGG | - | chr8.3:12634160-12634179 | MS.gene59949:intron | 45.0% |
| !!! | GGGTTTTGAGTTACCTGCTA+GGG | - | chr8.3:12632234-12632253 | MS.gene59949:CDS | 45.0% |
| !!! | TGGGTTTTGAGTTACCTGCT+AGG | - | chr8.3:12632233-12632252 | MS.gene59949:CDS | 45.0% |
| AAAGATTGGACAGCCAGCAG+AGG | - | chr8.3:12634688-12634707 | MS.gene59949:intron | 50.0% | |
| AAAGATTGGACTGCCAGCAG+AGG | - | chr8.3:12634649-12634668 | MS.gene59949:intron | 50.0% | |
| ACCAGAAGAGCCTGTTTCGT+TGG | - | chr8.3:12631895-12631914 | MS.gene59949:CDS | 50.0% | |
| ACTTGTTTCGTCTCCTCCAC+TGG | + | chr8.3:12634782-12634801 | None:intergenic | 50.0% | |
| AGAAAAGATCGGACAGCCAG+TGG | - | chr8.3:12634802-12634821 | MS.gene59949:intron | 50.0% | |
| AGATAACAGGATCACCCGTG+AGG | - | chr8.3:12634925-12634944 | MS.gene59949:intron | 50.0% | |
| AGCAGAGGAGACAAAAGACG+TGG | - | chr8.3:12634373-12634392 | MS.gene59949:intron | 50.0% | |
| ATCGACGACAAAGGAGCTGA+GGG | - | chr8.3:12634596-12634615 | MS.gene59949:intron | 50.0% | |
| ATTCAGGCTATACCTGGGAG+AGG | + | chr8.3:12633554-12633573 | None:intergenic | 50.0% | |
| ATTCGACAGACCATCCCTAC+TGG | - | chr8.3:12632845-12632864 | MS.gene59949:intron | 50.0% | |
| CCAGGTATAGCCTGAATGGA+AGG | - | chr8.3:12633557-12633576 | MS.gene59949:intron | 50.0% | |
| CCTTCCATTCAGGCTATACC+TGG | + | chr8.3:12633560-12633579 | None:intergenic | 50.0% | |
| CGAAAAGATTGGACAGCCAG+CGG | - | chr8.3:12634724-12634743 | MS.gene59949:intron | 50.0% | |
| GACGTCCGGCCTAACAATTT+CGG | - | chr8.3:12633758-12633777 | MS.gene59949:intron | 50.0% | |
| GACGTGGAAATGCAAGAAGC+TGG | - | chr8.3:12634389-12634408 | MS.gene59949:intron | 50.0% | |
| GAGAAAACGGCTGAAGTGGA+AGG | - | chr8.3:12634887-12634906 | MS.gene59949:intron | 50.0% | |
| GAGAGGAGATCCGTACCAAA+AGG | - | chr8.3:12634153-12634172 | MS.gene59949:intron | 50.0% | |
| GCAAGAAGCTGGCGAAACTA+AGG | - | chr8.3:12634400-12634419 | MS.gene59949:intron | 50.0% | |
| GCGAGTTCAGTTGAGAAGGA+AGG | - | chr8.3:12631842-12631861 | MS.gene59949:CDS | 50.0% | |
| GCTCATGCTCTAGTCAGCAT+TGG | + | chr8.3:12632920-12632939 | None:intergenic | 50.0% | |
| GGGAAATCCAACACTGCTGA+TGG | - | chr8.3:12634548-12634567 | MS.gene59949:intron | 50.0% | |
| GTTCACTTCACCAACAGGAG+AGG | - | chr8.3:12634136-12634155 | MS.gene59949:intron | 50.0% | |
| TATCGACGACAAAGGAGCTG+AGG | - | chr8.3:12634595-12634614 | MS.gene59949:intron | 50.0% | |
| TCCAACGAAACAGGCTCTTC+TGG | + | chr8.3:12631899-12631918 | None:intergenic | 50.0% | |
| TCGGAATTTGATTGGGGCAC+TGG | - | chr8.3:12634218-12634237 | MS.gene59949:intron | 50.0% | |
| TCTAGGTACATACGCCCTCT+GGG | - | chr8.3:12633298-12633317 | MS.gene59949:intron | 50.0% | |
| TCTCCCAGGTATAGCCTGAA+TGG | - | chr8.3:12633553-12633572 | MS.gene59949:intron | 50.0% | |
| TCTTGCTTTGTCTCCTCTGC+TGG | + | chr8.3:12634665-12634684 | None:intergenic | 50.0% | |
| TCTTGTCGCGTCTTTCTCCT+TGG | + | chr8.3:12634963-12634982 | None:intergenic | 50.0% | |
| TGACTAGAGCATGAGCCACA+TGG | - | chr8.3:12632924-12632943 | MS.gene59949:intron | 50.0% | |
| TGCCCCTACTGCTGAGAAAA+CGG | - | chr8.3:12634874-12634893 | MS.gene59949:intron | 50.0% | |
| TGCTGAGAAAACGGCTGAAG+TGG | - | chr8.3:12634883-12634902 | MS.gene59949:intron | 50.0% | |
| TTCTAGGTACATACGCCCTC+TGG | - | chr8.3:12633297-12633316 | MS.gene59949:intron | 50.0% | |
| ! | AAATGGCAAAGTGGAGGTGC+CGG | - | chr8.3:12633717-12633736 | MS.gene59949:intron | 50.0% |
| ! | CGGAATTTGATTGGGGCACT+GGG | - | chr8.3:12634219-12634238 | MS.gene59949:intron | 50.0% |
| !! | AAGGAAGGTTCTGGTGCTGT+CGG | - | chr8.3:12631857-12631876 | MS.gene59949:CDS | 50.0% |
| !! | AGCCGTTTTCTCAGCAGTAG+GGG | + | chr8.3:12634879-12634898 | None:intergenic | 50.0% |
| !! | CAGCCGTTTTCTCAGCAGTA+GGG | + | chr8.3:12634880-12634899 | None:intergenic | 50.0% |
| !! | GGAATTTGATTGGGGCACTG+GGG | - | chr8.3:12634220-12634239 | MS.gene59949:intron | 50.0% |
| !! | TCAGCCGTTTTCTCAGCAGT+AGG | + | chr8.3:12634881-12634900 | None:intergenic | 50.0% |
| !!! | TCACTTTTTGGCTCTGCTGG+AGG | + | chr8.3:12634293-12634312 | None:intergenic | 50.0% |
| AAAGATTGGACAGCCAGCGG+AGG | - | chr8.3:12634727-12634746 | MS.gene59949:intron | 55.0% | |
| AGCTACCTGCTCCATCTGGT+TGG | - | chr8.3:12631918-12631937 | MS.gene59949:CDS | 55.0% | |
| GCAGGTAGCTCCAACGAAAC+AGG | + | chr8.3:12631908-12631927 | None:intergenic | 55.0% | |
| GTACGGATCTCCTCTCCTGT+TGG | + | chr8.3:12634149-12634168 | None:intergenic | 55.0% | |
| TCGACGACAAAGGAGCTGAG+GGG | - | chr8.3:12634597-12634616 | MS.gene59949:intron | 55.0% | |
| TGAGGCTGGAGGAGAAACCA+AGG | - | chr8.3:12634943-12634962 | MS.gene59949:intron | 55.0% | |
| TGGTTTCTCCTCCAGCCTCA+CGG | + | chr8.3:12634943-12634962 | None:intergenic | 55.0% | |
| TTGGAGCTACCTGCTCCATC+TGG | - | chr8.3:12631914-12631933 | MS.gene59949:CDS | 55.0% | |
| TTGGTCCAACCAGATGGAGC+AGG | + | chr8.3:12631926-12631945 | None:intergenic | 55.0% | |
| ! | AGCTTCTGAGGACGAAGCAG+AGG | - | chr8.3:12634358-12634377 | MS.gene59949:intron | 55.0% |
| !! | AATGGCAAAGTGGAGGTGCC+GGG | - | chr8.3:12633718-12633737 | MS.gene59949:intron | 55.0% |
| !!! | GGCTCACTTTTTGGCTCTGC+TGG | + | chr8.3:12634296-12634315 | None:intergenic | 55.0% |
| AACAGGATCACCCGTGAGGC+TGG | - | chr8.3:12634929-12634948 | MS.gene59949:intron | 60.0% | |
| AGCGGAGGAGACAAAGCAGG+AGG | - | chr8.3:12634742-12634761 | MS.gene59949:intron | 60.0% | |
| GACAAAGGAGCTGAGGGGTC+TGG | - | chr8.3:12634602-12634621 | MS.gene59949:intron | 60.0% | |
| GGTTTCTCCTCCAGCCTCAC+GGG | + | chr8.3:12634942-12634961 | None:intergenic | 60.0% | |
| GTTAGGCCGGACGTCTTGAC+CGG | + | chr8.3:12633753-12633772 | None:intergenic | 60.0% | |
| TCAGTGCTCACACCTCTCCC+AGG | - | chr8.3:12633539-12633558 | MS.gene59949:intron | 60.0% | |
| TCCTGCTTTGTCTCCTCCGC+TGG | + | chr8.3:12634743-12634762 | None:intergenic | 60.0% | |
| TTAGGCCGGACGTCTTGACC+GGG | + | chr8.3:12633752-12633771 | None:intergenic | 60.0% | |
| !! | AAAGTGGAGGTGCCGGGGTT+CGG | - | chr8.3:12633724-12633743 | MS.gene59949:intron | 60.0% |
| !! | ATGGCAAAGTGGAGGTGCCG+GGG | - | chr8.3:12633719-12633738 | MS.gene59949:intron | 60.0% |
| AGGATCACCCGTGAGGCTGG+AGG | - | chr8.3:12634932-12634951 | MS.gene59949:intron | 65.0% | |
| GCCAGCGGAGGAGACAAAGC+AGG | - | chr8.3:12634739-12634758 | MS.gene59949:intron | 65.0% | |
| TAGGCCGGACGTCTTGACCG+GGG | + | chr8.3:12633751-12633770 | None:intergenic | 65.0% | |
| CGGACCCCGGTCAAGACGTC+CGG | - | chr8.3:12633744-12633763 | MS.gene59949:intron | 70.0% | |
| CTTGACCGGGGTCCGAACCC+CGG | + | chr8.3:12633739-12633758 | None:intergenic | 70.0% | |
| ! | GGTGCTGTCGGTGCAGCTGC+AGG | - | chr8.3:12631869-12631888 | MS.gene59949:CDS | 70.0% |
| !! | AGGTGCCGGGGTTCGGACCC+CGG | - | chr8.3:12633731-12633750 | MS.gene59949:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 12631839 | 12635057 | 12631839 | ID=MS.gene59949 |
| chr8.3 | mRNA | 12631839 | 12635057 | 12631839 | ID=MS.gene59949.t1;Parent=MS.gene59949 |
| chr8.3 | exon | 12634947 | 12635057 | 12634947 | ID=MS.gene59949.t1.exon1;Parent=MS.gene59949.t1 |
| chr8.3 | CDS | 12634947 | 12635057 | 12634947 | ID=cds.MS.gene59949.t1;Parent=MS.gene59949.t1 |
| chr8.3 | exon | 12631839 | 12632804 | 12631839 | ID=MS.gene59949.t1.exon2;Parent=MS.gene59949.t1 |
| chr8.3 | CDS | 12631839 | 12632804 | 12631839 | ID=cds.MS.gene59949.t1;Parent=MS.gene59949.t1 |
| Gene Sequence |
| Protein sequence |
