Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78193.t1 | XP_024632498.1 | 95.5 | 583 | 15 | 1 | 1 | 572 | 1 | 583 | 1.90E-305 | 1057.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78193.t1 | Q42876 | 72.6 | 526 | 123 | 6 | 60 | 572 | 51 | 568 | 3.9e-211 | 735.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78193.t1 | A0A396J799 | 95.5 | 583 | 15 | 1 | 1 | 572 | 1 | 583 | 1.3e-305 | 1057.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene78193 | 0.839253 | 1.77E-57 | -1.69E-46 |
| MS.gene049173 | MS.gene78193 | 0.82154 | 3.82E-53 | -1.69E-46 |
| MS.gene049217 | MS.gene78193 | 0.888626 | 5.00E-73 | -1.69E-46 |
| MS.gene049222 | MS.gene78193 | 0.84934 | 3.44E-60 | -1.69E-46 |
| MS.gene049285 | MS.gene78193 | 0.885697 | 6.50E-72 | -1.69E-46 |
| MS.gene049320 | MS.gene78193 | 0.872062 | 4.24E-67 | -1.69E-46 |
| MS.gene04938 | MS.gene78193 | 0.81666 | 4.93E-52 | -1.69E-46 |
| MS.gene04939 | MS.gene78193 | 0.854176 | 1.46E-61 | -1.69E-46 |
| MS.gene049427 | MS.gene78193 | 0.82984 | 4.11E-55 | -1.69E-46 |
| MS.gene049609 | MS.gene78193 | 0.810835 | 9.46E-51 | -1.69E-46 |
| MS.gene049614 | MS.gene78193 | 0.811387 | 7.18E-51 | -1.69E-46 |
| MS.gene049627 | MS.gene78193 | 0.847742 | 9.54E-60 | -1.69E-46 |
| MS.gene049633 | MS.gene78193 | 0.827442 | 1.56E-54 | -1.69E-46 |
| MS.gene049805 | MS.gene78193 | 0.810417 | 1.16E-50 | -1.69E-46 |
| MS.gene05010 | MS.gene78193 | 0.822396 | 2.42E-53 | -1.69E-46 |
| MS.gene050163 | MS.gene78193 | 0.913128 | 8.81E-84 | -1.69E-46 |
| MS.gene050165 | MS.gene78193 | 0.911008 | 9.88E-83 | -1.69E-46 |
| MS.gene050333 | MS.gene78193 | 0.896424 | 3.74E-76 | -1.69E-46 |
| MS.gene050353 | MS.gene78193 | -0.850868 | 1.29E-60 | -1.69E-46 |
| MS.gene050444 | MS.gene78193 | 0.828206 | 1.02E-54 | -1.69E-46 |
| MS.gene050475 | MS.gene78193 | -0.832687 | 8.20E-56 | -1.69E-46 |
| MS.gene050504 | MS.gene78193 | 0.867507 | 1.30E-65 | -1.69E-46 |
| MS.gene050518 | MS.gene78193 | 0.871016 | 9.42E-67 | -1.69E-46 |
| MS.gene050541 | MS.gene78193 | -0.829025 | 6.48E-55 | -1.69E-46 |
| MS.gene050612 | MS.gene78193 | 0.881397 | 2.48E-70 | -1.69E-46 |
| MS.gene050675 | MS.gene78193 | 0.875523 | 2.88E-68 | -1.69E-46 |
| MS.gene050699 | MS.gene78193 | 0.857807 | 1.27E-62 | -1.69E-46 |
| MS.gene050747 | MS.gene78193 | 0.805036 | 1.62E-49 | -1.69E-46 |
| MS.gene050767 | MS.gene78193 | 0.850418 | 1.72E-60 | -1.69E-46 |
| MS.gene050770 | MS.gene78193 | 0.852682 | 3.93E-61 | -1.69E-46 |
| MS.gene050772 | MS.gene78193 | 0.8544 | 1.26E-61 | -1.69E-46 |
| MS.gene05080 | MS.gene78193 | 0.80705 | 6.11E-50 | -1.69E-46 |
| MS.gene050876 | MS.gene78193 | 0.821277 | 4.40E-53 | -1.69E-46 |
| MS.gene05087 | MS.gene78193 | 0.805515 | 1.29E-49 | -1.69E-46 |
| MS.gene050950 | MS.gene78193 | 0.812337 | 4.46E-51 | -1.69E-46 |
| MS.gene050986 | MS.gene78193 | 0.883654 | 3.74E-71 | -1.69E-46 |
| MS.gene05100 | MS.gene78193 | 0.853612 | 2.13E-61 | -1.69E-46 |
| MS.gene051228 | MS.gene78193 | 0.853954 | 1.70E-61 | -1.69E-46 |
| MS.gene051317 | MS.gene78193 | 0.820236 | 7.63E-53 | -1.69E-46 |
| MS.gene051434 | MS.gene78193 | 0.834352 | 3.15E-56 | -1.69E-46 |
| MS.gene051551 | MS.gene78193 | 0.81575 | 7.88E-52 | -1.69E-46 |
| MS.gene051694 | MS.gene78193 | 0.823477 | 1.36E-53 | -1.69E-46 |
| MS.gene051810 | MS.gene78193 | 0.902245 | 1.18E-78 | -1.69E-46 |
| MS.gene051858 | MS.gene78193 | 0.838248 | 3.22E-57 | -1.69E-46 |
| MS.gene051949 | MS.gene78193 | 0.833585 | 4.90E-56 | -1.69E-46 |
| MS.gene052271 | MS.gene78193 | 0.883434 | 4.50E-71 | -1.69E-46 |
| MS.gene052379 | MS.gene78193 | 0.861314 | 1.12E-63 | -1.69E-46 |
| MS.gene052615 | MS.gene78193 | 0.82711 | 1.88E-54 | -1.69E-46 |
| MS.gene052670 | MS.gene78193 | 0.820787 | 5.70E-53 | -1.69E-46 |
| MS.gene052870 | MS.gene78193 | 0.803479 | 3.42E-49 | -1.69E-46 |
| MS.gene052872 | MS.gene78193 | 0.815057 | 1.12E-51 | -1.69E-46 |
| MS.gene052916 | MS.gene78193 | 0.811376 | 7.22E-51 | -1.69E-46 |
| MS.gene052966 | MS.gene78193 | 0.833946 | 3.98E-56 | -1.69E-46 |
| MS.gene053009 | MS.gene78193 | 0.857103 | 2.05E-62 | -1.69E-46 |
| MS.gene053203 | MS.gene78193 | 0.810245 | 1.27E-50 | -1.69E-46 |
| MS.gene053207 | MS.gene78193 | 0.847729 | 9.62E-60 | -1.69E-46 |
| MS.gene053213 | MS.gene78193 | 0.858941 | 5.83E-63 | -1.69E-46 |
| MS.gene053286 | MS.gene78193 | 0.852354 | 4.88E-61 | -1.69E-46 |
| MS.gene053322 | MS.gene78193 | 0.852111 | 5.72E-61 | -1.69E-46 |
| MS.gene053561 | MS.gene78193 | -0.809623 | 1.73E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene78193 | 0.800563 | 1.36E-48 | -1.69E-46 |
| MS.gene053632 | MS.gene78193 | 0.842205 | 2.98E-58 | -1.69E-46 |
| MS.gene053915 | MS.gene78193 | 0.825623 | 4.24E-54 | -1.69E-46 |
| MS.gene054376 | MS.gene78193 | 0.833156 | 6.27E-56 | -1.69E-46 |
| MS.gene054595 | MS.gene78193 | 0.806263 | 8.95E-50 | -1.69E-46 |
| MS.gene054600 | MS.gene78193 | 0.86085 | 1.55E-63 | -1.69E-46 |
| MS.gene054642 | MS.gene78193 | 0.888331 | 6.49E-73 | -1.69E-46 |
| MS.gene054802 | MS.gene78193 | 0.826537 | 2.57E-54 | -1.69E-46 |
| MS.gene054803 | MS.gene78193 | 0.822736 | 2.02E-53 | -1.69E-46 |
| MS.gene054804 | MS.gene78193 | 0.830049 | 3.66E-55 | -1.69E-46 |
| MS.gene054954 | MS.gene78193 | 0.862774 | 3.99E-64 | -1.69E-46 |
| MS.gene055154 | MS.gene78193 | -0.802052 | 6.74E-49 | -1.69E-46 |
| MS.gene055206 | MS.gene78193 | 0.815881 | 7.36E-52 | -1.69E-46 |
| MS.gene055254 | MS.gene78193 | 0.826901 | 2.10E-54 | -1.69E-46 |
| MS.gene055362 | MS.gene78193 | 0.869281 | 3.48E-66 | -1.69E-46 |
| MS.gene055397 | MS.gene78193 | 0.871411 | 6.98E-67 | -1.69E-46 |
| MS.gene055499 | MS.gene78193 | 0.869907 | 2.18E-66 | -1.69E-46 |
| MS.gene055502 | MS.gene78193 | 0.853533 | 2.24E-61 | -1.69E-46 |
| MS.gene055577 | MS.gene78193 | 0.834549 | 2.81E-56 | -1.69E-46 |
| MS.gene055634 | MS.gene78193 | 0.829191 | 5.91E-55 | -1.69E-46 |
| MS.gene055636 | MS.gene78193 | 0.872348 | 3.41E-67 | -1.69E-46 |
| MS.gene055638 | MS.gene78193 | 0.873169 | 1.81E-67 | -1.69E-46 |
| MS.gene055647 | MS.gene78193 | 0.863919 | 1.76E-64 | -1.69E-46 |
| MS.gene055722 | MS.gene78193 | 0.827947 | 1.18E-54 | -1.69E-46 |
| MS.gene055748 | MS.gene78193 | 0.811085 | 8.35E-51 | -1.69E-46 |
| MS.gene055751 | MS.gene78193 | 0.808937 | 2.42E-50 | -1.69E-46 |
| MS.gene055776 | MS.gene78193 | 0.802188 | 6.32E-49 | -1.69E-46 |
| MS.gene05592 | MS.gene78193 | 0.816388 | 5.67E-52 | -1.69E-46 |
| MS.gene055941 | MS.gene78193 | 0.829588 | 4.73E-55 | -1.69E-46 |
| MS.gene056083 | MS.gene78193 | 0.84754 | 1.08E-59 | -1.69E-46 |
| MS.gene056374 | MS.gene78193 | 0.849976 | 2.29E-60 | -1.69E-46 |
| MS.gene056409 | MS.gene78193 | 0.800885 | 1.17E-48 | -1.69E-46 |
| MS.gene056449 | MS.gene78193 | 0.830599 | 2.68E-55 | -1.69E-46 |
| MS.gene056504 | MS.gene78193 | 0.80804 | 3.77E-50 | -1.69E-46 |
| MS.gene056510 | MS.gene78193 | 0.838157 | 3.40E-57 | -1.69E-46 |
| MS.gene056549 | MS.gene78193 | 0.818136 | 2.29E-52 | -1.69E-46 |
| MS.gene056550 | MS.gene78193 | -0.802634 | 5.11E-49 | -1.69E-46 |
| MS.gene056609 | MS.gene78193 | 0.801889 | 7.28E-49 | -1.69E-46 |
| MS.gene056611 | MS.gene78193 | 0.808639 | 2.81E-50 | -1.69E-46 |
| MS.gene056657 | MS.gene78193 | 0.878446 | 2.79E-69 | -1.69E-46 |
| MS.gene056692 | MS.gene78193 | 0.828745 | 7.58E-55 | -1.69E-46 |
| MS.gene057011 | MS.gene78193 | 0.807988 | 3.86E-50 | -1.69E-46 |
| MS.gene057129 | MS.gene78193 | 0.867932 | 9.51E-66 | -1.69E-46 |
| MS.gene057246 | MS.gene78193 | 0.808026 | 3.79E-50 | -1.69E-46 |
| MS.gene057331 | MS.gene78193 | 0.830848 | 2.33E-55 | -1.69E-46 |
| MS.gene057416 | MS.gene78193 | 0.848338 | 6.53E-60 | -1.69E-46 |
| MS.gene057831 | MS.gene78193 | 0.827116 | 1.87E-54 | -1.69E-46 |
| MS.gene058019 | MS.gene78193 | 0.809097 | 2.24E-50 | -1.69E-46 |
| MS.gene058323 | MS.gene78193 | 0.809217 | 2.11E-50 | -1.69E-46 |
| MS.gene058335 | MS.gene78193 | 0.811569 | 6.56E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene78193 | 0.862338 | 5.44E-64 | -1.69E-46 |
| MS.gene058544 | MS.gene78193 | 0.82405 | 9.96E-54 | -1.69E-46 |
| MS.gene058723 | MS.gene78193 | 0.852175 | 5.48E-61 | -1.69E-46 |
| MS.gene058773 | MS.gene78193 | 0.87904 | 1.72E-69 | -1.69E-46 |
| MS.gene05883 | MS.gene78193 | 0.83117 | 1.94E-55 | -1.69E-46 |
| MS.gene058903 | MS.gene78193 | 0.806763 | 7.02E-50 | -1.69E-46 |
| MS.gene058993 | MS.gene78193 | 0.807086 | 6.00E-50 | -1.69E-46 |
| MS.gene059022 | MS.gene78193 | 0.880072 | 7.42E-70 | -1.69E-46 |
| MS.gene059023 | MS.gene78193 | 0.833601 | 4.86E-56 | -1.69E-46 |
| MS.gene059029 | MS.gene78193 | 0.873324 | 1.61E-67 | -1.69E-46 |
| MS.gene059079 | MS.gene78193 | 0.81844 | 1.96E-52 | -1.69E-46 |
| MS.gene059102 | MS.gene78193 | -0.827721 | 1.34E-54 | -1.69E-46 |
| MS.gene059181 | MS.gene78193 | 0.807967 | 3.90E-50 | -1.69E-46 |
| MS.gene059536 | MS.gene78193 | 0.812829 | 3.48E-51 | -1.69E-46 |
| MS.gene059677 | MS.gene78193 | 0.893199 | 7.85E-75 | -1.69E-46 |
| MS.gene059718 | MS.gene78193 | 0.880648 | 4.62E-70 | -1.69E-46 |
| MS.gene059756 | MS.gene78193 | 0.819529 | 1.11E-52 | -1.69E-46 |
| MS.gene059858 | MS.gene78193 | 0.818143 | 2.29E-52 | -1.69E-46 |
| MS.gene059865 | MS.gene78193 | 0.823294 | 1.50E-53 | -1.69E-46 |
| MS.gene059902 | MS.gene78193 | 0.83886 | 2.24E-57 | -1.69E-46 |
| MS.gene059960 | MS.gene78193 | 0.863615 | 2.19E-64 | -1.69E-46 |
| MS.gene060337 | MS.gene78193 | -0.821021 | 5.04E-53 | -1.69E-46 |
| MS.gene060341 | MS.gene78193 | 0.819714 | 1.00E-52 | -1.69E-46 |
| MS.gene060356 | MS.gene78193 | 0.81441 | 1.56E-51 | -1.69E-46 |
| MS.gene060703 | MS.gene78193 | 0.82937 | 5.35E-55 | -1.69E-46 |
| MS.gene060727 | MS.gene78193 | 0.801776 | 7.68E-49 | -1.69E-46 |
| MS.gene060728 | MS.gene78193 | 0.821455 | 4.00E-53 | -1.69E-46 |
| MS.gene060762 | MS.gene78193 | 0.856591 | 2.90E-62 | -1.69E-46 |
| MS.gene06077 | MS.gene78193 | 0.827449 | 1.55E-54 | -1.69E-46 |
| MS.gene060818 | MS.gene78193 | 0.830877 | 2.29E-55 | -1.69E-46 |
| MS.gene06092 | MS.gene78193 | 0.812742 | 3.64E-51 | -1.69E-46 |
| MS.gene061134 | MS.gene78193 | 0.830812 | 2.38E-55 | -1.69E-46 |
| MS.gene061150 | MS.gene78193 | 0.864122 | 1.53E-64 | -1.69E-46 |
| MS.gene061171 | MS.gene78193 | 0.835739 | 1.41E-56 | -1.69E-46 |
| MS.gene061200 | MS.gene78193 | 0.866223 | 3.34E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78193.t1 | MTR_4g130860 | 74.141 | 553 | 118 | 7 | 34 | 572 | 26 | 567 | 0.0 | 816 |
| MS.gene78193.t1 | MTR_2g460760 | 93.557 | 357 | 12 | 1 | 1 | 346 | 1 | 357 | 0.0 | 653 |
| MS.gene78193.t1 | MTR_2g460740 | 98.696 | 230 | 3 | 0 | 343 | 572 | 17 | 246 | 2.61e-167 | 475 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78193.t1 | AT2G24200 | 72.222 | 522 | 128 | 4 | 62 | 572 | 4 | 519 | 0.0 | 758 |
| MS.gene78193.t1 | AT2G24200 | 72.222 | 522 | 128 | 4 | 62 | 572 | 4 | 519 | 0.0 | 758 |
| MS.gene78193.t1 | AT4G30920 | 72.296 | 527 | 125 | 6 | 60 | 572 | 63 | 582 | 0.0 | 741 |
| MS.gene78193.t1 | AT4G30910 | 68.691 | 527 | 144 | 6 | 60 | 572 | 62 | 581 | 0.0 | 701 |
| MS.gene78193.t1 | AT4G30910 | 65.818 | 550 | 144 | 7 | 60 | 572 | 62 | 604 | 0.0 | 688 |
| MS.gene78193.t1 | AT2G24200 | 67.050 | 522 | 119 | 5 | 62 | 572 | 4 | 483 | 0.0 | 684 |
| MS.gene78193.t1 | AT5G13940 | 72.917 | 48 | 13 | 0 | 283 | 330 | 66 | 113 | 3.12e-15 | 79.7 |
Find 155 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAAATCACTTGATATTAT+TGG | 0.174623 | 2.2:-32988949 | MS.gene78193:CDS |
| CAATAATATCAAGTGATTTA+AGG | 0.213855 | 2.2:+32988950 | None:intergenic |
| TTAAGTTTCTTCTCGAATTC+AGG | 0.248834 | 2.2:+32988913 | None:intergenic |
| TCTAAATTAGGCGGTTTATT+AGG | 0.263788 | 2.2:-32989297 | MS.gene78193:CDS |
| TTTAAGGGCCGGTTTCTTCT+TGG | 0.272500 | 2.2:+32988966 | None:intergenic |
| GATATTATTGGTCTTGGAAC+AGG | 0.287196 | 2.2:-32988937 | MS.gene78193:CDS |
| GTATCTTCTGGAATCATTCT+TGG | 0.293774 | 2.2:-32988877 | MS.gene78193:CDS |
| TGAGCTCATGAAATTTGATA+TGG | 0.294915 | 2.2:-32986045 | MS.gene78193:CDS |
| CAGCGTTGTGCAACAGGATT+TGG | 0.300152 | 2.2:-32977618 | MS.gene78193:CDS |
| GCAGTGTAAGGAATTGAATA+TGG | 0.300638 | 2.2:-32987930 | MS.gene78193:CDS |
| ATTGACCTGGCAACATTAAC+TGG | 0.335424 | 2.2:-32979908 | MS.gene78193:CDS |
| TCACTTGATATTATTGGTCT+TGG | 0.336063 | 2.2:-32988943 | MS.gene78193:CDS |
| GTGTTCTCAATATCTGATTC+TGG | 0.337101 | 2.2:+32989325 | None:intergenic |
| GCGATTGCAGAAGCAATGTT+AGG | 0.343895 | 2.2:+32989039 | None:intergenic |
| ATTGAATATGGGATCCTATC+TGG | 0.350799 | 2.2:-32987918 | MS.gene78193:CDS |
| CTACCTGGTGTGAGCACATT+AGG | 0.353631 | 2.2:+32988832 | None:intergenic |
| GAAAAGCAGCGTTGTGCAAC+AGG | 0.353953 | 2.2:-32977624 | MS.gene78193:CDS |
| CCGTCACAGCAACTGCTAAT+AGG | 0.361373 | 2.2:+32989382 | None:intergenic |
| TGCCAATGGAAGAAAGTTAC+TGG | 0.367635 | 2.2:-32978264 | MS.gene78193:CDS |
| TCAATGGATGCATATTGATT+TGG | 0.374105 | 2.2:-32977664 | MS.gene78193:CDS |
| AATAATATCAAGTGATTTAA+GGG | 0.375912 | 2.2:+32988951 | None:intergenic |
| GCTCTAGGACCCTCAATTGC+AGG | 0.382807 | 2.2:-32979872 | MS.gene78193:intron |
| AGAACACTAGACTCTAAATT+AGG | 0.382808 | 2.2:-32989309 | MS.gene78193:CDS |
| GCTTACTCTGGCTGATGCTC+TGG | 0.386123 | 2.2:-32980280 | MS.gene78193:CDS |
| TTTGGAGCAGCAAAGGCTAT+TGG | 0.389431 | 2.2:-32986005 | MS.gene78193:CDS |
| ATGTGAGCGGGGAGAAACTA+TGG | 0.394427 | 2.2:-32978291 | MS.gene78193:CDS |
| ATTTGGTGTATCAACTTTAG+TGG | 0.399529 | 2.2:-32977601 | MS.gene78193:CDS |
| GTCCAGCAGCAGGTGTAATT+CGG | 0.413560 | 2.2:+32989220 | None:intergenic |
| TACTGGGAATCAATGAAATC+AGG | 0.419927 | 2.2:-32978247 | MS.gene78193:CDS |
| TCAGAAGAAGACTCGGTCTA+AGG | 0.425629 | 2.2:-32989817 | MS.gene78193:CDS |
| TCCAAGAGACTCGCCTTGAT+TGG | 0.429219 | 2.2:-32989192 | MS.gene78193:CDS |
| GTGTATCAACTTTAGTGGAA+TGG | 0.429941 | 2.2:-32977596 | MS.gene78193:CDS |
| TCCCAGTAACTTTCTTCCAT+TGG | 0.430091 | 2.2:+32978262 | None:intergenic |
| GAGAATATGATAAGTGGAAC+AGG | 0.431241 | 2.2:-32981256 | MS.gene78193:CDS |
| ATTACACCTGCTGCTGGACT+TGG | 0.432997 | 2.2:-32989216 | MS.gene78193:CDS |
| GCCAATCAAGGCGAGTCTCT+TGG | 0.434300 | 2.2:+32989191 | None:intergenic |
| TGTATCAACTTTAGTGGAAT+GGG | 0.444480 | 2.2:-32977595 | MS.gene78193:CDS |
| ATTGCTTCTGCAATCGCCAC+TGG | 0.445457 | 2.2:-32989033 | MS.gene78193:CDS |
| TATGCAGGAGATGTATCTTC+TGG | 0.447764 | 2.2:-32988889 | MS.gene78193:CDS |
| CTCATGATTACCTGCAATTG+AGG | 0.453250 | 2.2:+32979862 | None:intergenic |
| ATGCCTCCTCGCGCCACTCT+CGG | 0.454279 | 2.2:-32989731 | MS.gene78193:CDS |
| GAGACGAGAAGAGGAGAATG+AGG | 0.464529 | 2.2:+32989844 | None:intergenic |
| GGAAGCTGTGACAATGTCTC+CGG | 0.471511 | 2.2:+32981225 | None:intergenic |
| TTCTTTAGCCAGGTCATCAC+TGG | 0.471955 | 2.2:+32978330 | None:intergenic |
| CTGTGTTATAAACCACCAAC+TGG | 0.477290 | 2.2:-32987854 | MS.gene78193:CDS |
| TTCTGGAATCATTCTTGGAC+GGG | 0.477480 | 2.2:-32988872 | MS.gene78193:CDS |
| TTTGCAGTTTGTTGATGAAA+AGG | 0.478445 | 2.2:-32977688 | MS.gene78193:intron |
| TTGTAACCAAGGTGTGGATA+AGG | 0.478460 | 2.2:-32980250 | MS.gene78193:intron |
| CGATTGCAGAAGCAATGTTA+GGG | 0.480670 | 2.2:+32989040 | None:intergenic |
| AATGCCAACTTGACATTGAC+AGG | 0.483813 | 2.2:+32987830 | None:intergenic |
| AAGTTGGCATTAGTCGGAAA+AGG | 0.484155 | 2.2:-32987818 | MS.gene78193:CDS |
| ATTGGTCAAATCAAACCTCT+TGG | 0.491039 | 2.2:-32985987 | MS.gene78193:CDS |
| CTGATGTGGCGGAATGGAAA+GGG | 0.491199 | 2.2:-32989407 | MS.gene78193:CDS |
| GTCTGAGTCCAAGAAGAAAC+CGG | 0.492672 | 2.2:-32988974 | MS.gene78193:CDS |
| CTTTAGTGGAATGGGTATTG+AGG | 0.496078 | 2.2:-32977587 | MS.gene78193:CDS |
| TTCCGCAGCTAACTTCGCTC+AGG | 0.498847 | 2.2:-32989112 | MS.gene78193:CDS |
| ATATCAAGTGATTTAAGGGC+CGG | 0.505431 | 2.2:+32988955 | None:intergenic |
| CTCTTCATCAGAAGAAGACT+CGG | 0.508584 | 2.2:-32989824 | MS.gene78193:CDS |
| TTGTTGATGAAAAGGTTCAA+TGG | 0.510573 | 2.2:-32977680 | MS.gene78193:CDS |
| CTGCTCAGCATCCAATACTT+TGG | 0.511072 | 2.2:+32987949 | None:intergenic |
| ACATTGACAGGTCCAGTTGG+TGG | 0.511434 | 2.2:+32987842 | None:intergenic |
| AGTGAAGTCCTCTTCGGACG+AGG | 0.513926 | 2.2:+32989269 | None:intergenic |
| ATTGGATGCTGAGCAGTGTA+AGG | 0.514214 | 2.2:-32987942 | MS.gene78193:CDS |
| AGTGAGAATAGTAGATGAGG+AGG | 0.515044 | 2.2:+32989886 | None:intergenic |
| GGCTGCAGCAACAGCCAGAT+AGG | 0.519387 | 2.2:+32987904 | None:intergenic |
| CCGCCTAATGTGCTCACACC+AGG | 0.520105 | 2.2:-32988835 | MS.gene78193:intron |
| CCTATTAGCAGTTGCTGTGA+CGG | 0.521774 | 2.2:-32989382 | MS.gene78193:CDS |
| TCATGATTACCTGCAATTGA+GGG | 0.527240 | 2.2:+32979863 | None:intergenic |
| AGTAGTGAGAATAGTAGATG+AGG | 0.528530 | 2.2:+32989883 | None:intergenic |
| AGATGAGCCGAGGCCAATCA+AGG | 0.528615 | 2.2:+32989179 | None:intergenic |
| TGCTGAGGGTAGGCTTACTC+TGG | 0.528850 | 2.2:-32980292 | MS.gene78193:CDS |
| TCGTCCGAAGAGGACTTCAC+TGG | 0.529813 | 2.2:-32989267 | MS.gene78193:CDS |
| GAGCTCATGAAATTTGATAT+GGG | 0.529929 | 2.2:-32986044 | MS.gene78193:CDS |
| ATGCACCAGTTAATGTTGCC+AGG | 0.529940 | 2.2:+32979903 | None:intergenic |
| AGCACCACCTTGACGACCAC+CGG | 0.532762 | 2.2:+32978204 | None:intergenic |
| CTCCGAATTACACCTGCTGC+TGG | 0.532926 | 2.2:-32989222 | MS.gene78193:CDS |
| TTGATGCTTCTGATGTGAGC+GGG | 0.535615 | 2.2:-32978303 | MS.gene78193:CDS |
| GCAGAGAGTCCTTGAGAAGT+GGG | 0.535817 | 2.2:+32989063 | None:intergenic |
| GAGGACTTCACTGGAAAACT+CGG | 0.540308 | 2.2:-32989258 | MS.gene78193:CDS |
| TGCTCTTCAGATAATTGACC+TGG | 0.541191 | 2.2:-32979921 | MS.gene78193:intron |
| GGCAGAGAGTCCTTGAGAAG+TGG | 0.543326 | 2.2:+32989062 | None:intergenic |
| TTGCTTCTGCAATCGCCACT+GGG | 0.543365 | 2.2:-32989032 | MS.gene78193:CDS |
| CAGTGTAAGGAATTGAATAT+GGG | 0.544881 | 2.2:-32987929 | MS.gene78193:CDS |
| GAGAAGAAACTTAAGTATGC+AGG | 0.546266 | 2.2:-32988904 | MS.gene78193:CDS |
| CTGATACTGATGTGGCGGAA+TGG | 0.546886 | 2.2:-32989413 | MS.gene78193:CDS |
| GGTGCATGTATAATTGCTCT+AGG | 0.548072 | 2.2:-32979887 | MS.gene78193:CDS |
| GGCATAATGAGGTTGCGGAC+AGG | 0.548592 | 2.2:+32989749 | None:intergenic |
| GAAGATATCATTTGCAGCGA+AGG | 0.548980 | 2.2:-32989439 | MS.gene78193:intron |
| AATGTCAAGTTGGCATTAGT+CGG | 0.549056 | 2.2:-32987824 | MS.gene78193:CDS |
| GGTGGCTACAATATAAAGAC+AGG | 0.551468 | 2.2:-32986083 | MS.gene78193:CDS |
| ACTGATGTGGCGGAATGGAA+AGG | 0.554911 | 2.2:-32989408 | MS.gene78193:CDS |
| CTTCTGGAATCATTCTTGGA+CGG | 0.556172 | 2.2:-32988873 | MS.gene78193:CDS |
| TTGGATCCAAGTCCAGCAGC+AGG | 0.562328 | 2.2:+32989210 | None:intergenic |
| GAAGCTGTGACAATGTCTCC+GGG | 0.564125 | 2.2:+32981226 | None:intergenic |
| TGGATGCATATTGATTTGGC+TGG | 0.565101 | 2.2:-32977660 | MS.gene78193:CDS |
| GACATTGTCACAGCTTCCAA+TGG | 0.565824 | 2.2:-32981220 | MS.gene78193:CDS |
| AGACTCGCCTTGATTGGCCT+CGG | 0.567237 | 2.2:-32989186 | MS.gene78193:CDS |
| CTGGTGTATGCTTGTAACCA+AGG | 0.569089 | 2.2:-32980261 | MS.gene78193:CDS |
| ATATTATTGGTCTTGGAACA+GGG | 0.572432 | 2.2:-32988936 | MS.gene78193:CDS |
| GAGGAGGCATAATGAGGTTG+CGG | 0.572965 | 2.2:+32989744 | None:intergenic |
| ATGAGCTCAATCATACAGCC+AGG | 0.573251 | 2.2:+32986059 | None:intergenic |
| CTGAACACCGGTGGTCGTCA+AGG | 0.578044 | 2.2:-32978211 | MS.gene78193:CDS |
| TGGACCTGTCAATGTCAAGT+TGG | 0.580098 | 2.2:-32987834 | MS.gene78193:CDS |
| TGCATACCTTATCCACACCT+TGG | 0.582813 | 2.2:+32980244 | None:intergenic |
| AATCAAACCTCTTGGAGTGG+AGG | 0.584428 | 2.2:-32985979 | MS.gene78193:intron |
| GCTTGTGAGAATATGATAAG+TGG | 0.585466 | 2.2:-32981262 | MS.gene78193:CDS |
| GTTGTTCTACCCACTTCTCA+AGG | 0.589480 | 2.2:-32989072 | MS.gene78193:CDS |
| GGTTGCGGACAGGTACTTCG+CGG | 0.599917 | 2.2:+32989759 | None:intergenic |
| AAGCCGAGAGTGGCGCGAGG+AGG | 0.600377 | 2.2:+32989728 | None:intergenic |
| ATTTACAACCAGTGATGACC+TGG | 0.603884 | 2.2:-32978338 | MS.gene78193:CDS |
| GAAACTATGGAGGATGCCAA+TGG | 0.604081 | 2.2:-32978278 | MS.gene78193:CDS |
| GGGGTGAGTGAAGCCGAGAG+TGG | 0.604519 | 2.2:+32989718 | None:intergenic |
| TAGAGGAAGCAGATGAGCCG+AGG | 0.607505 | 2.2:+32989169 | None:intergenic |
| TGGCGCGAGGAGGCATAATG+AGG | 0.611619 | 2.2:+32989738 | None:intergenic |
| TCTGATGAAGAGACGAGAAG+AGG | 0.614468 | 2.2:+32989835 | None:intergenic |
| TACAATATAAAGACAGGACC+TGG | 0.618282 | 2.2:-32986077 | MS.gene78193:CDS |
| GTGAAGCCGAGAGTGGCGCG+AGG | 0.619609 | 2.2:+32989725 | None:intergenic |
| GGTTAACAACACAGATGCTG+AGG | 0.621469 | 2.2:-32980307 | MS.gene78193:CDS |
| CTTCGCGGGTCAAACAAAGA+TGG | 0.623294 | 2.2:+32989774 | None:intergenic |
| TAACAGACCTCCACTCCAAG+AGG | 0.623708 | 2.2:+32985972 | None:intergenic |
| TTGATTTGGCTGGTCCTGTG+TGG | 0.624990 | 2.2:-32977650 | MS.gene78193:CDS |
| TAGAACAACGACAGCAACAT+CGG | 0.625044 | 2.2:+32989086 | None:intergenic |
| TTGACATTGACAGGTCCAGT+TGG | 0.625230 | 2.2:+32987839 | None:intergenic |
| GCCAATGGAAGAAAGTTACT+GGG | 0.626087 | 2.2:-32978263 | MS.gene78193:CDS |
| TCAAATCAAACCTCTTGGAG+TGG | 0.631046 | 2.2:-32985982 | MS.gene78193:CDS |
| AACACCGGTGGTCGTCAAGG+TGG | 0.632459 | 2.2:-32978208 | MS.gene78193:CDS |
| ACACTAGACTCTAAATTAGG+CGG | 0.637017 | 2.2:-32989306 | MS.gene78193:CDS |
| AGGTGAAGCCTCGTCCGAAG+AGG | 0.638183 | 2.2:-32989277 | MS.gene78193:CDS |
| GTTGCGGACAGGTACTTCGC+GGG | 0.641251 | 2.2:+32989760 | None:intergenic |
| CTCATGAAATTTGATATGGG+TGG | 0.641407 | 2.2:-32986041 | MS.gene78193:CDS |
| GGATACTGATACTGATGTGG+CGG | 0.642793 | 2.2:-32989418 | MS.gene78193:CDS |
| ACTGCCGCATTTAAAACCCT+CGG | 0.643946 | 2.2:-32989147 | MS.gene78193:CDS |
| AGTGGAACAGGTATGAGACC+CGG | 0.645701 | 2.2:-32981244 | MS.gene78193:CDS |
| TTTGATGCTTCTGATGTGAG+CGG | 0.646083 | 2.2:-32978304 | MS.gene78193:CDS |
| TGATGTGGCGGAATGGAAAG+GGG | 0.646316 | 2.2:-32989406 | MS.gene78193:CDS |
| CACAGATGAATAAACTGAGG+AGG | 0.647289 | 2.2:+32987872 | None:intergenic |
| TGATATGGGTGGATCAGCTG+CGG | 0.648554 | 2.2:-32986030 | MS.gene78193:CDS |
| ACAACACAGATGCTGAGGGT+AGG | 0.654335 | 2.2:-32980302 | MS.gene78193:CDS |
| CCTGGTGTGAGCACATTAGG+CGG | 0.655495 | 2.2:+32988835 | None:intergenic |
| GAAGGATACTGATACTGATG+TGG | 0.662024 | 2.2:-32989421 | MS.gene78193:CDS |
| AACAAACGCACGGACCTTGG+GGG | 0.670089 | 2.2:+32989682 | None:intergenic |
| TGATGCTTCTGATGTGAGCG+GGG | 0.674520 | 2.2:-32978302 | MS.gene78193:CDS |
| GTATGCTTGTAACCAAGGTG+TGG | 0.676182 | 2.2:-32980256 | MS.gene78193:CDS |
| CGGAAGCAACAGACTCACCG+AGG | 0.689833 | 2.2:+32989130 | None:intergenic |
| GATTGCAGAAGCAATGTTAG+GGG | 0.690061 | 2.2:+32989041 | None:intergenic |
| AGCCTGAGCGAAGTTAGCTG+CGG | 0.694802 | 2.2:+32989110 | None:intergenic |
| TAACACAGATGAATAAACTG+AGG | 0.696832 | 2.2:+32987869 | None:intergenic |
| GTTAACAACACAGATGCTGA+GGG | 0.698139 | 2.2:-32980306 | MS.gene78193:CDS |
| TGAGCGGGGAGAAACTATGG+AGG | 0.700569 | 2.2:-32978288 | MS.gene78193:CDS |
| GTCAAACAAAGATGGCGTAG+CGG | 0.704194 | 2.2:+32989782 | None:intergenic |
| TGTTCCCACGACAGTCCCAG+TGG | 0.709007 | 2.2:+32989017 | None:intergenic |
| GCTGATATGCTGAACACCGG+TGG | 0.715179 | 2.2:-32978220 | MS.gene78193:CDS |
| AAACTGAGGAGGATTTGCTG+AGG | 0.722190 | 2.2:+32987883 | None:intergenic |
| GGAAGCAACAGACTCACCGA+GGG | 0.724292 | 2.2:+32989131 | None:intergenic |
| GTTGCTGATATGCTGAACAC+CGG | 0.743416 | 2.2:-32978223 | MS.gene78193:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 32977575 | 32989921 | 32977575 | ID=MS.gene78193 |
| chr2.2 | mRNA | 32977575 | 32989921 | 32977575 | ID=MS.gene78193.t1;Parent=MS.gene78193 |
| chr2.2 | exon | 32989697 | 32989921 | 32989697 | ID=MS.gene78193.t1.exon1;Parent=MS.gene78193.t1 |
| chr2.2 | CDS | 32989697 | 32989921 | 32989697 | ID=cds.MS.gene78193.t1;Parent=MS.gene78193.t1 |
| chr2.2 | exon | 32989029 | 32989457 | 32989029 | ID=MS.gene78193.t1.exon2;Parent=MS.gene78193.t1 |
| chr2.2 | CDS | 32989029 | 32989457 | 32989029 | ID=cds.MS.gene78193.t1;Parent=MS.gene78193.t1 |
| chr2.2 | exon | 32988836 | 32988995 | 32988836 | ID=MS.gene78193.t1.exon3;Parent=MS.gene78193.t1 |
| chr2.2 | CDS | 32988836 | 32988995 | 32988836 | ID=cds.MS.gene78193.t1;Parent=MS.gene78193.t1 |
| chr2.2 | exon | 32987803 | 32988028 | 32987803 | ID=MS.gene78193.t1.exon4;Parent=MS.gene78193.t1 |
| chr2.2 | CDS | 32987803 | 32988028 | 32987803 | ID=cds.MS.gene78193.t1;Parent=MS.gene78193.t1 |
| chr2.2 | exon | 32985980 | 32986106 | 32985980 | ID=MS.gene78193.t1.exon5;Parent=MS.gene78193.t1 |
| chr2.2 | CDS | 32985980 | 32986106 | 32985980 | ID=cds.MS.gene78193.t1;Parent=MS.gene78193.t1 |
| chr2.2 | exon | 32981207 | 32981302 | 32981207 | ID=MS.gene78193.t1.exon6;Parent=MS.gene78193.t1 |
| chr2.2 | CDS | 32981207 | 32981302 | 32981207 | ID=cds.MS.gene78193.t1;Parent=MS.gene78193.t1 |
| chr2.2 | exon | 32980251 | 32980328 | 32980251 | ID=MS.gene78193.t1.exon7;Parent=MS.gene78193.t1 |
| chr2.2 | CDS | 32980251 | 32980328 | 32980251 | ID=cds.MS.gene78193.t1;Parent=MS.gene78193.t1 |
| chr2.2 | exon | 32979873 | 32979933 | 32979873 | ID=MS.gene78193.t1.exon8;Parent=MS.gene78193.t1 |
| chr2.2 | CDS | 32979873 | 32979933 | 32979873 | ID=cds.MS.gene78193.t1;Parent=MS.gene78193.t1 |
| chr2.2 | exon | 32978177 | 32978364 | 32978177 | ID=MS.gene78193.t1.exon9;Parent=MS.gene78193.t1 |
| chr2.2 | CDS | 32978177 | 32978364 | 32978177 | ID=cds.MS.gene78193.t1;Parent=MS.gene78193.t1 |
| chr2.2 | exon | 32977575 | 32977703 | 32977575 | ID=MS.gene78193.t1.exon10;Parent=MS.gene78193.t1 |
| chr2.2 | CDS | 32977575 | 32977703 | 32977575 | ID=cds.MS.gene78193.t1;Parent=MS.gene78193.t1 |
| Gene Sequence |
| Protein sequence |
