AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85138


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85138.t1 MTR_2g101400 96.542 347 12 0 1 347 1 347 0.0 700
MS.gene85138.t1 MTR_7g086110 67.081 322 105 1 26 346 4 325 1.02e-164 462
MS.gene85138.t1 MTR_2g067760 62.500 328 121 2 17 344 21 346 2.49e-156 442
MS.gene85138.t1 MTR_2g451450 58.086 303 126 1 27 329 30 331 2.01e-127 368
MS.gene85138.t1 MTR_2g451450 62.882 229 84 1 113 341 1 228 1.50e-104 306
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85138.t1 AT3G12740 64.024 328 116 2 17 344 23 348 1.29e-156 443
MS.gene85138.t1 AT1G54320 62.805 328 120 2 17 344 22 347 4.71e-154 437
MS.gene85138.t1 AT1G79450 62.538 331 122 2 17 347 22 350 1.27e-152 433
MS.gene85138.t1 AT1G16360 62.006 329 123 2 16 344 21 347 5.61e-152 431
MS.gene85138.t1 AT1G16360 61.755 319 120 2 26 344 17 333 2.99e-146 416
MS.gene85138.t1 AT1G16360 60.855 304 117 2 26 329 17 318 5.90e-136 390
MS.gene85138.t1 AT1G79450 61.649 279 105 2 69 347 7 283 2.99e-124 358
MS.gene85138.t1 AT5G46150 52.632 342 157 3 1 341 1 338 2.01e-119 348
MS.gene85138.t1 AT5G46150 52.632 342 157 3 1 341 1 338 2.01e-119 348
MS.gene85138.t1 AT5G46150 52.727 330 154 2 1 329 1 329 2.80e-116 340
MS.gene85138.t1 AT1G16360 55.502 209 91 2 26 234 17 223 1.11e-79 243
MS.gene85138.t1 AT1G16360 55.502 209 91 2 26 234 17 223 1.11e-79 243
MS.gene85138.t1 AT5G46150 49.145 234 117 2 1 233 1 233 3.24e-74 229

Find 59 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCATACATTTAGGTTTCT+TGG 0.257657 2.4:+3369256 None:intergenic
GGAATCATCTTTATCCCTAT+TGG 0.278510 2.4:-3368660 MS.gene85138:CDS
CTATCCTTGTTCTGTGCTAT+AGG 0.299641 2.4:-3367076 MS.gene85138:CDS
ATTGCCACATTTACTGCAAT+TGG 0.348370 2.4:-3368681 MS.gene85138:CDS
TTTCAGAGTGGAGGTTTGAT+TGG 0.358409 2.4:-3367667 MS.gene85138:CDS
ACCCATCCAGGTGTTAGAAT+TGG 0.365146 2.4:+3368933 None:intergenic
GTTGTCCATTGAAAATTTGT+AGG 0.382564 2.4:+3367774 None:intergenic
AACAATGATGCAAGACCAAT+AGG 0.394455 2.4:+3368645 None:intergenic
AACAAGAGGATCTGATTGTT+TGG 0.396536 2.4:-3367306 MS.gene85138:CDS
GGGATTGCATACCTTGTTGT+TGG 0.410908 2.4:-3367103 MS.gene85138:CDS
CAGAGTGGAGGTTTGATTGG+AGG 0.413776 2.4:-3367664 MS.gene85138:CDS
CCAACTTTCAGAAAACTGTA+TGG 0.436379 2.4:-3367265 MS.gene85138:CDS
ACAAGACTTGCACCCACAAA+TGG 0.438149 2.4:-3368427 MS.gene85138:CDS
CAACTACAACTTGGATTGGT+GGG 0.445444 2.4:-3367141 MS.gene85138:CDS
ATGAGGCCACAAGGAACAAT+TGG 0.445844 2.4:+3367820 None:intergenic
TTCCTTGTGGCCTCATTGCA+TGG 0.449722 2.4:-3367813 MS.gene85138:CDS
TACAACACATACGAGTTTCA+AGG 0.464659 2.4:-3367184 MS.gene85138:CDS
GTTAGAATTGGTTTCCATGC+AGG 0.464924 2.4:+3368945 None:intergenic
ATTGCATACCTTGTTGTTGG+TGG 0.482393 2.4:-3367100 MS.gene85138:CDS
GTGGGTGCAAGTCTTGTTAG+TGG 0.484884 2.4:+3368433 None:intergenic
CTATCAACTACAACTTGGAT+TGG 0.485356 2.4:-3367145 MS.gene85138:CDS
GGGATCCATCCTACTTATCA+TGG 0.488506 2.4:-3366733 MS.gene85138:CDS
TTATCATGGAACAGAAATCC+AGG 0.490301 2.4:-3366719 MS.gene85138:CDS
TGATGAAGTCATATCCATCA+TGG 0.492388 2.4:+3369316 None:intergenic
GTAGAAATGATAAGCAGTTG+TGG 0.499291 2.4:-3367906 MS.gene85138:CDS
TTTGATAGTAATTATCAAGC+TGG 0.503169 2.4:+3368276 None:intergenic
CTGTTCCATGATAAGTAGGA+TGG 0.511626 2.4:+3366728 None:intergenic
ATTTCTGTTCCATGATAAGT+AGG 0.512059 2.4:+3366724 None:intergenic
GTTTCAAGGTAGGAAGAAGT+TGG 0.512965 2.4:-3367170 MS.gene85138:CDS
ACAATGATGCAAGACCAATA+GGG 0.513968 2.4:+3368646 None:intergenic
ACCAATTCTAACACCTGGAT+GGG 0.523126 2.4:-3368934 MS.gene85138:intron
TGGTTCTATCAACTACAACT+TGG 0.538526 2.4:-3367150 MS.gene85138:CDS
ATGTACTAACAATCCATTTG+TGG 0.539027 2.4:+3368414 None:intergenic
CAACTTTCAGAAAACTGTAT+GGG 0.539444 2.4:-3367264 MS.gene85138:CDS
GATATGACTTCATCAAAAGA+TGG 0.544518 2.4:-3369308 MS.gene85138:CDS
AACCAATTCTAACACCTGGA+TGG 0.544797 2.4:-3368935 MS.gene85138:CDS
GTTGCATATTATACCCATCC+AGG 0.548338 2.4:+3368921 None:intergenic
TCAACTACAACTTGGATTGG+TGG 0.549590 2.4:-3367142 MS.gene85138:CDS
AACTGCATCTTTAGCATCAG+AGG 0.555713 2.4:+3368475 None:intergenic
AGTAGACAAAACAGAAGGAA+AGG 0.558583 2.4:-3367845 MS.gene85138:CDS
TTGTGGAGAAAGTCAGCTGA+AGG 0.563848 2.4:-3367889 MS.gene85138:CDS
CTCCATGCAATGAGGCCACA+AGG 0.565861 2.4:+3367811 None:intergenic
GCATCAGTTGAGTGAACAAG+AGG 0.573104 2.4:-3367320 MS.gene85138:intron
TGGAAACCAATTCTAACACC+TGG 0.581766 2.4:-3368939 MS.gene85138:CDS
GAATCCTATAGCACAGAACA+AGG 0.595106 2.4:+3367072 None:intergenic
ATTACTATCAAAATCATCGC+CGG 0.596581 2.4:-3368265 MS.gene85138:intron
GATTCCAATTGCAGTAAATG+TGG 0.597750 2.4:+3368677 None:intergenic
TTCTGTATGTGATCAAGCCA+AGG 0.598227 2.4:-3367045 MS.gene85138:intron
CACAGCAAGAACTACCTGCA+TGG 0.603633 2.4:-3368959 MS.gene85138:CDS
TGTACTAACAATCCATTTGT+GGG 0.623733 2.4:+3368415 None:intergenic
TATCATGGAACAGAAATCCA+GGG 0.639144 2.4:-3366718 MS.gene85138:CDS
AGGATAGTCCACCAACAACA+AGG 0.647718 2.4:+3367092 None:intergenic
ACTGCATCTTTAGCATCAGA+GGG 0.648958 2.4:+3368476 None:intergenic
TGTGGAGAAAGTCAGCTGAA+GGG 0.651423 2.4:-3367888 MS.gene85138:CDS
GATCCAGTAGACAAAACAGA+AGG 0.655095 2.4:-3367850 MS.gene85138:CDS
TGAACATACTCCATGCAATG+AGG 0.658438 2.4:+3367803 None:intergenic
AAGGAGCCAATTGTTCCTTG+TGG 0.669710 2.4:-3367826 MS.gene85138:CDS
ACACATACGAGTTTCAAGGT+AGG 0.677272 2.4:-3367180 MS.gene85138:CDS
AAGTAGGATGGATCCCCGAG+AGG 0.733345 2.4:+3366740 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTGTTTTTTTTTTTTTTT+TGG + chr2.4:3366896-3366915 None:intergenic 10.0%
!!! TTTAGACAAAAATTATATTT+TGG + chr2.4:3367196-3367215 None:intergenic 10.0%
!! ACTAATTATTATTTCCATTT+AGG + chr2.4:3367672-3367691 None:intergenic 15.0%
!! ATTAAAATCTTGGAAAATTT+AGG - chr2.4:3366948-3366967 MS.gene85138:intron 15.0%
!! TTAAAATCTTGGAAAATTTA+GGG - chr2.4:3366949-3366968 MS.gene85138:intron 15.0%
!! TTTATGTTAGGAAATTAATA+TGG - chr2.4:3369170-3369189 MS.gene85138:intron 15.0%
!!! CAACTGAATTTTATTTATAA+TGG - chr2.4:3367460-3367479 MS.gene85138:intron 15.0%
!!! TATAATTTTTGTCTAAATCA+CGG - chr2.4:3367199-3367218 MS.gene85138:CDS 15.0%
!!! TTTATGTCTTTAATTTTATC+AGG - chr2.4:3367314-3367333 MS.gene85138:CDS 15.0%
!! AACAAAAACAAATTTACTTG+AGG - chr2.4:3367993-3368012 MS.gene85138:intron 20.0%
!! AGTGACAAAAATTCTAAATT+TGG - chr2.4:3368308-3368327 MS.gene85138:CDS 20.0%
!! ATCATCCAAAATCATATTAA+AGG + chr2.4:3368071-3368090 None:intergenic 20.0%
!! ATTAAACTGTTTATCCAAAT+AGG + chr2.4:3368414-3368433 None:intergenic 20.0%
!! GTTCTGATAAAATTTATGTT+AGG - chr2.4:3369158-3369177 MS.gene85138:intron 20.0%
!! TATTAAGAAACTGTAAGAAA+TGG + chr2.4:3367271-3367290 None:intergenic 20.0%
!! TTAAACTGTTTATCCAAATA+GGG + chr2.4:3368413-3368432 None:intergenic 20.0%
!!! ATTTTCAGTGTTATCAATTA+CGG - chr2.4:3367785-3367804 MS.gene85138:CDS 20.0%
!!! ATTTTCCAAGATTTTAATAC+AGG + chr2.4:3366946-3366965 None:intergenic 20.0%
!!! TTTTCATTTTCATACCTAAA+TGG - chr2.4:3367655-3367674 MS.gene85138:CDS 20.0%
! ACTTATACGTAAGTACTTAT+AGG + chr2.4:3368452-3368471 None:intergenic 25.0%
! CAAATTGTAAGTGCAAATTA+AGG + chr2.4:3366787-3366806 None:intergenic 25.0%
! GAATAATGAATCATTGTTTC+AGG + chr2.4:3366874-3366893 None:intergenic 25.0%
! TAATTAGTTGCAAACTTTAC+AGG - chr2.4:3367684-3367703 MS.gene85138:CDS 25.0%
!! AAGAAAAGCTGAAACATTTT+TGG - chr2.4:3369203-3369222 MS.gene85138:intron 25.0%
!! TATCCTAAAAATTTTCAGAG+TGG - chr2.4:3368341-3368360 MS.gene85138:intron 25.0%
!! TGATGCCTTTAATATGATTT+TGG - chr2.4:3368063-3368082 MS.gene85138:intron 25.0%
!! TTGCTTATTTCTCAAGTAAA+AGG + chr2.4:3368663-3368682 None:intergenic 25.0%
!! TTGGAAGTTTTCTTTGAATT+TGG + chr2.4:3366748-3366767 None:intergenic 25.0%
!! TTTGATAGTAATTATCAAGC+TGG + chr2.4:3367747-3367766 None:intergenic 25.0%
!!! GCTTTTTCTATACTACTTTA+TGG - chr2.4:3369013-3369032 MS.gene85138:intron 25.0%
AACAAAAAGAACATAGCATG+GGG - chr2.4:3368284-3368303 MS.gene85138:CDS 30.0%
ACATCATAGGAAGAAAAAGA+AGG + chr2.4:3366849-3366868 None:intergenic 30.0%
ATGTACTAACAATCCATTTG+TGG + chr2.4:3367609-3367628 None:intergenic 30.0%
ATTACTATCAAAATCATCGC+CGG - chr2.4:3367755-3367774 MS.gene85138:CDS 30.0%
ATTTCTGTTCCATGATAAGT+AGG + chr2.4:3369299-3369318 None:intergenic 30.0%
CAACAAAAAGAACATAGCAT+GGG - chr2.4:3368283-3368302 MS.gene85138:CDS 30.0%
CAACTTTCAGAAAACTGTAT+GGG - chr2.4:3368756-3368775 MS.gene85138:intron 30.0%
CATTTGTTCCTTGTGATTTA+CGG - chr2.4:3366918-3366937 MS.gene85138:intron 30.0%
GAAGTGCATGCTTAAATTAA+CGG + chr2.4:3367249-3367268 None:intergenic 30.0%
GATATGACTTCATCAAAAGA+TGG - chr2.4:3366712-3366731 MS.gene85138:CDS 30.0%
GCAAAATATTTCCTTTACCT+TGG + chr2.4:3368995-3369014 None:intergenic 30.0%
GCAAATTAAGGCATACATTT+AGG + chr2.4:3366775-3366794 None:intergenic 30.0%
GTTGTCCATTGAAAATTTGT+AGG + chr2.4:3368249-3368268 None:intergenic 30.0%
TAAAGAAATACTAATGCAGG+TGG - chr2.4:3367483-3367502 MS.gene85138:intron 30.0%
TCAACAAAAAGAACATAGCA+TGG - chr2.4:3368282-3368301 MS.gene85138:CDS 30.0%
TGGTAAAGAAATACTAATGC+AGG - chr2.4:3367480-3367499 MS.gene85138:intron 30.0%
TGTACTAACAATCCATTTGT+GGG + chr2.4:3367608-3367627 None:intergenic 30.0%
TTTCCATAAGCTCTTTCAAA+CGG - chr2.4:3368580-3368599 MS.gene85138:intron 30.0%
! AATTTTTGTCTAAATCACGG+TGG - chr2.4:3367202-3367221 MS.gene85138:CDS 30.0%
! CAAATTTTCAATGGACAACA+AGG - chr2.4:3368250-3368269 MS.gene85138:intron 30.0%
! GAAGTTTTCTTTGAATTTGG+AGG + chr2.4:3366745-3366764 None:intergenic 30.0%
! TGACACCTACAAATTTTCAA+TGG - chr2.4:3368241-3368260 MS.gene85138:intron 30.0%
! TTGAATACGCTCTTTTCTAT+TGG - chr2.4:3369122-3369141 MS.gene85138:intron 30.0%
! TTGCATCATTGTTTTCATCA+GGG - chr2.4:3367385-3367404 MS.gene85138:intron 30.0%
!! ATTGTTTCAGGTTACATCAT+AGG + chr2.4:3366862-3366881 None:intergenic 30.0%
AACAAGAGGATCTGATTGTT+TGG - chr2.4:3368714-3368733 MS.gene85138:intron 35.0%
AACAATGATGCAAGACCAAT+AGG + chr2.4:3367378-3367397 None:intergenic 35.0%
AACACTGAAAATGTGCATAC+CGG + chr2.4:3367777-3367796 None:intergenic 35.0%
ACAATGATGCAAGACCAATA+GGG + chr2.4:3367377-3367396 None:intergenic 35.0%
AGCTGGTAGTAGATAAAAAC+AGG + chr2.4:3367730-3367749 None:intergenic 35.0%
AGTAGACAAAACAGAAGGAA+AGG - chr2.4:3368175-3368194 MS.gene85138:intron 35.0%
ATTGCCACATTTACTGCAAT+TGG - chr2.4:3367339-3367358 MS.gene85138:intron 35.0%
CCAACTTTCAGAAAACTGTA+TGG - chr2.4:3368755-3368774 MS.gene85138:intron 35.0%
CGTAAATCACAAGGAACAAA+TGG + chr2.4:3366920-3366939 None:intergenic 35.0%
CTATCAACTACAACTTGGAT+TGG - chr2.4:3368875-3368894 MS.gene85138:intron 35.0%
GATTCCAATTGCAGTAAATG+TGG + chr2.4:3367346-3367365 None:intergenic 35.0%
GGAATCATCTTTATCCCTAT+TGG - chr2.4:3367360-3367379 MS.gene85138:intron 35.0%
GGTGGGAAAAATAGATTCTT+GGG - chr2.4:3368896-3368915 MS.gene85138:intron 35.0%
GTAGAAATGATAAGCAGTTG+TGG - chr2.4:3368114-3368133 MS.gene85138:intron 35.0%
GTGGGAAAAATAGATTCTTG+GGG - chr2.4:3368897-3368916 MS.gene85138:intron 35.0%
GTGTTATCAATTACGGATCA+CGG - chr2.4:3367792-3367811 MS.gene85138:CDS 35.0%
TACAACACATACGAGTTTCA+AGG - chr2.4:3368836-3368855 MS.gene85138:intron 35.0%
TATCATGGAACAGAAATCCA+GGG - chr2.4:3369302-3369321 MS.gene85138:CDS 35.0%
TGGTGGGAAAAATAGATTCT+TGG - chr2.4:3368895-3368914 MS.gene85138:intron 35.0%
TTATCATGGAACAGAAATCC+AGG - chr2.4:3369301-3369320 MS.gene85138:CDS 35.0%
TTATCCAAATAGGGACTTAC+AGG + chr2.4:3368404-3368423 None:intergenic 35.0%
! AGGCATACATTTAGGTTTCT+TGG + chr2.4:3366767-3366786 None:intergenic 35.0%
! ATCATTGTTTTCATCAGGGA+AGG - chr2.4:3367389-3367408 MS.gene85138:intron 35.0%
! CCTAAAAATTTTCAGAGTGG+AGG - chr2.4:3368344-3368363 MS.gene85138:intron 35.0%
! CTTGCATCATTGTTTTCATC+AGG - chr2.4:3367384-3367403 MS.gene85138:intron 35.0%
! TGGTTCTATCAACTACAACT+TGG - chr2.4:3368870-3368889 MS.gene85138:intron 35.0%
! TTAGTGCATGTTTGAAACCA+CGG - chr2.4:3367135-3367154 MS.gene85138:CDS 35.0%
! TTTCCTTCTGTTTTGTCTAC+TGG + chr2.4:3368176-3368195 None:intergenic 35.0%
!! CCATACAGTTTTCTGAAAGT+TGG + chr2.4:3368758-3368777 None:intergenic 35.0%
!! CCTCCACTCTGAAAATTTTT+AGG + chr2.4:3368347-3368366 None:intergenic 35.0%
AACCAATTCTAACACCTGGA+TGG - chr2.4:3367085-3367104 MS.gene85138:CDS 40.0%
AACTGCATCTTTAGCATCAG+AGG + chr2.4:3367548-3367567 None:intergenic 40.0%
ACACATACGAGTTTCAAGGT+AGG - chr2.4:3368840-3368859 MS.gene85138:intron 40.0%
ACCAATTCTAACACCTGGAT+GGG - chr2.4:3367086-3367105 MS.gene85138:CDS 40.0%
ACTGCATCTTTAGCATCAGA+GGG + chr2.4:3367547-3367566 None:intergenic 40.0%
AGAAATACTAATGCAGGTGG+TGG - chr2.4:3367486-3367505 MS.gene85138:intron 40.0%
ATGTGATCAAGCCAAGGTAA+AGG - chr2.4:3368981-3369000 MS.gene85138:intron 40.0%
CATACCTGTAAGTCCCTATT+TGG - chr2.4:3368397-3368416 MS.gene85138:intron 40.0%
CGGAGCCTGTATTAAAATCT+TGG - chr2.4:3366938-3366957 MS.gene85138:intron 40.0%
CTATCCTTGTTCTGTGCTAT+AGG - chr2.4:3368944-3368963 MS.gene85138:CDS 40.0%
CTGTTCCATGATAAGTAGGA+TGG + chr2.4:3369295-3369314 None:intergenic 40.0%
GAATCCTATAGCACAGAACA+AGG + chr2.4:3368951-3368970 None:intergenic 40.0%
GATCCAGTAGACAAAACAGA+AGG - chr2.4:3368170-3368189 MS.gene85138:intron 40.0%
GTTGCATATTATACCCATCC+AGG + chr2.4:3367102-3367121 None:intergenic 40.0%
GTTTCAAGGTAGGAAGAAGT+TGG - chr2.4:3368850-3368869 MS.gene85138:intron 40.0%
TCATTGAAAATCGTGCTGTG+TGG + chr2.4:3367973-3367992 None:intergenic 40.0%
TGAACATACTCCATGCAATG+AGG + chr2.4:3368220-3368239 None:intergenic 40.0%
TGACCGTTTGAAAGAGCTTA+TGG + chr2.4:3368586-3368605 None:intergenic 40.0%
TGGAAACCAATTCTAACACC+TGG - chr2.4:3367081-3367100 MS.gene85138:CDS 40.0%
TTCTGTATGTGATCAAGCCA+AGG - chr2.4:3368975-3368994 MS.gene85138:intron 40.0%
TTTCAGAGTGGAGGTTTGAT+TGG - chr2.4:3368353-3368372 MS.gene85138:intron 40.0%
! CTTGGAAAATTTAGGGCTTG+AGG - chr2.4:3366956-3366975 MS.gene85138:intron 40.0%
! GTTAGAATTGGTTTCCATGC+AGG + chr2.4:3367078-3367097 None:intergenic 40.0%
! TCAACTACAACTTGGATTGG+TGG - chr2.4:3368878-3368897 MS.gene85138:intron 40.0%
! TTTTGTCTACTGGATCACAG+TGG + chr2.4:3368166-3368185 None:intergenic 40.0%
!! ATTGCATACCTTGTTGTTGG+TGG - chr2.4:3368920-3368939 MS.gene85138:intron 40.0%
!! CAACTACAACTTGGATTGGT+GGG - chr2.4:3368879-3368898 MS.gene85138:intron 40.0%
AAGGAGCCAATTGTTCCTTG+TGG - chr2.4:3368194-3368213 MS.gene85138:intron 45.0%
ACAAGACTTGCACCCACAAA+TGG - chr2.4:3367593-3367612 MS.gene85138:intron 45.0%
ACCCATCCAGGTGTTAGAAT+TGG + chr2.4:3367090-3367109 None:intergenic 45.0%
AGGATAGTCCACCAACAACA+AGG + chr2.4:3368931-3368950 None:intergenic 45.0%
ATGAGGCCACAAGGAACAAT+TGG + chr2.4:3368203-3368222 None:intergenic 45.0%
GCATCAGTTGAGTGAACAAG+AGG - chr2.4:3368700-3368719 MS.gene85138:intron 45.0%
GGGATCCATCCTACTTATCA+TGG - chr2.4:3369287-3369306 MS.gene85138:CDS 45.0%
TACAGGCTCCGTAAATCACA+AGG + chr2.4:3366929-3366948 None:intergenic 45.0%
TGATATTGTCAAACTCGCCG+TGG + chr2.4:3367155-3367174 None:intergenic 45.0%
TGTGGAGAAAGTCAGCTGAA+GGG - chr2.4:3368132-3368151 MS.gene85138:intron 45.0%
TTGTGGAGAAAGTCAGCTGA+AGG - chr2.4:3368131-3368150 MS.gene85138:intron 45.0%
! GGGATTGCATACCTTGTTGT+TGG - chr2.4:3368917-3368936 MS.gene85138:intron 45.0%
! TGCTCTTTTTGCAGACCTCT+CGG - chr2.4:3369265-3369284 MS.gene85138:CDS 45.0%
CACAGCAAGAACTACCTGCA+TGG - chr2.4:3367061-3367080 MS.gene85138:CDS 50.0%
CAGAGTGGAGGTTTGATTGG+AGG - chr2.4:3368356-3368375 MS.gene85138:intron 50.0%
TTCCTTGTGGCCTCATTGCA+TGG - chr2.4:3368207-3368226 MS.gene85138:intron 50.0%
! CTCTTTTTGCAGACCTCTCG+GGG - chr2.4:3369267-3369286 MS.gene85138:CDS 50.0%
! GCTCTTTTTGCAGACCTCTC+GGG - chr2.4:3369266-3369285 MS.gene85138:CDS 50.0%
!! GTGGGTGCAAGTCTTGTTAG+TGG + chr2.4:3367590-3367609 None:intergenic 50.0%
AAGTAGGATGGATCCCCGAG+AGG + chr2.4:3369283-3369302 None:intergenic 55.0%
CTCCATGCAATGAGGCCACA+AGG + chr2.4:3368212-3368231 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 3366706 3369336 3366706 ID=MS.gene85138
chr2.4 mRNA 3366706 3369336 3366706 ID=MS.gene85138.t1;Parent=MS.gene85138
chr2.4 exon 3369264 3369336 3369264 ID=MS.gene85138.t1.exon1;Parent=MS.gene85138.t1
chr2.4 CDS 3369264 3369336 3369264 ID=cds.MS.gene85138.t1;Parent=MS.gene85138.t1
chr2.4 exon 3368935 3368993 3368935 ID=MS.gene85138.t1.exon2;Parent=MS.gene85138.t1
chr2.4 CDS 3368935 3368993 3368935 ID=cds.MS.gene85138.t1;Parent=MS.gene85138.t1
chr2.4 exon 3368632 3368706 3368632 ID=MS.gene85138.t1.exon3;Parent=MS.gene85138.t1
chr2.4 CDS 3368632 3368706 3368632 ID=cds.MS.gene85138.t1;Parent=MS.gene85138.t1
chr2.4 exon 3368424 3368540 3368424 ID=MS.gene85138.t1.exon4;Parent=MS.gene85138.t1
chr2.4 CDS 3368424 3368540 3368424 ID=cds.MS.gene85138.t1;Parent=MS.gene85138.t1
chr2.4 exon 3368266 3368336 3368266 ID=MS.gene85138.t1.exon5;Parent=MS.gene85138.t1
chr2.4 CDS 3368266 3368336 3368266 ID=cds.MS.gene85138.t1;Parent=MS.gene85138.t1
chr2.4 exon 3367639 3367939 3367639 ID=MS.gene85138.t1.exon6;Parent=MS.gene85138.t1
chr2.4 CDS 3367639 3367939 3367639 ID=cds.MS.gene85138.t1;Parent=MS.gene85138.t1
chr2.4 exon 3367046 3367335 3367046 ID=MS.gene85138.t1.exon7;Parent=MS.gene85138.t1
chr2.4 CDS 3367046 3367335 3367046 ID=cds.MS.gene85138.t1;Parent=MS.gene85138.t1
chr2.4 exon 3366706 3366763 3366706 ID=MS.gene85138.t1.exon8;Parent=MS.gene85138.t1
chr2.4 CDS 3366706 3366763 3366706 ID=cds.MS.gene85138.t1;Parent=MS.gene85138.t1
Gene Sequence

>MS.gene85138

ATGATGGATATGACTTCATCAAAAGATGGACAATCTCCTCCAAATTCAAAGAAAACTTCCAAGAAACCTAAATGTATGCCTTAATTTGCACTTACAATTTGTTACATATATATCATATGATAACATGTCTTGTTTTTTTTCCTTCTTTTTCTTCCTATGATGTAACCTGAAACAATGATTCATTATTCCAAAAAAAAAAAAAAAACACAAACCATTTGTTCCTTGTGATTTACGGAGCCTGTATTAAAATCTTGGAAAATTTAGGGCTTGAGGCTGTTTCATATGTATAAAGTTGTGTTATATTATTATTGCTCATAGTTATTTGTTTTATTTTAATTTGTAGATTCAAGATTCTCACAGCAAGAACTACCTGCATGGAAACCAATTCTAACACCTGGATGGGTATAATATGCAACATAACTCATTTAATTAGTGCATGTTTGAAACCACGGCGAGTTTGACAATATCACGTGATTTTGTTGAAGTTCCAAAATATAATTTTTGTCTAAATCACGGTGGCACAAAATTCTACTATACTTACCGTTAATTTAAGCATGCACTTCCATTTCTTACAGTTTCTTAATATATGCAAAAATTTAATCAATGATTTTATGTCTTTAATTTTATCAGGTGATTGCCACATTTACTGCAATTGGAATCATCTTTATCCCTATTGGTCTTGCATCATTGTTTTCATCAGGGAAGGTAAGAACATAACAATGTATAGAATGAAATGAAGTTTTGCTACTGAATTCAACTGAATTTTATTTATAATGGTAAAGAAATACTAATGCAGGTGGTGGAAGCTGAATTCAGATATGATGAAACGTGTCTTTCTCCCTCTGATGCTAAAGATGCAGTTGCATATATTAAAAGTGATACCACTAACAAGACTTGCACCCACAAATGGATTGTTAGTACATTCACTTCTGTTTCACAAGAGTTTCATTTTTCATTTTCATACCTAAATGGAAATAATAATTAGTTGCAAACTTTACAGGTTGAGCAAAAAATGCAAGCTCCTGTTTTTATCTACTACCAGCTTGATAATTACTATCAAAATCATCGCCGGTATGCACATTTTCAGTGTTATCAATTACGGATCACGGAAAATATTAGTTTGTTCAAATTCTGCTACGCAACAGTGCTCTAGCATGCGCTATAGTCACTATTTCACAATATTTTGTACTAAATAGTGTATTGCAAAACAACAATGATTTGTTCAAATTTCACTATTCAGTTGCGCTAGAACGCTACTATTTGACCACACAGCACGATTTTCAATGAAACAAAAACAAATTTACTTGAGGCATATGCATATGTACAAATGCATACATTTGATGCTTATTATTTTTAATGATGCCTTTAATATGATTTTGGATGATTAACTCTTGCAGATATGTTAAGAGTAGAAATGATAAGCAGTTGTGGAGAAAGTCAGCTGAAGGGCAAACAGACCACTGTGATCCAGTAGACAAAACAGAAGGAAAGGAGCCAATTGTTCCTTGTGGCCTCATTGCATGGAGTATGTTCAATGACACCTACAAATTTTCAATGGACAACAAGGATTTAACTGTCAACAAAAAGAACATAGCATGGGGAAGTGACAAAAATTCTAAATTTGGTCGTGAAGTTTATCCTAAAAATTTTCAGAGTGGAGGTTTGATTGGAGGTGCAAAACTCAATGAAAGCATACCTGTAAGTCCCTATTTGGATAAACAGTTTAATTATATAAACACTTATCCTATAAGTACTTACGTATAAGTTATTTCTACGCTAAAGTATAAAATAAAACTGTTTTCGTAAGTTATTATGAAGAGCTTATGAAAATAAGCTGAATACAACTTATAGACATGTCTATAACAGTATAACTATTTCCATAAGCTCTTTCAAACGGTCACAATATATGACTTCACAAATTACTTTGTTTTTTTTTTCATGTGATAAAATATAACCTTTTACTTGAGAAATAAGCAATCTATGTATTGTTGCATGCATCAGTTGAGTGAACAAGAGGATCTGATTGTTTGGATGAGAACAGCAGCATTACCAACTTTCAGAAAACTGTATGGGAAGATAGAGTCTGATCTTGAAGTTAATGATGAGATAGAAATACTAATTCAGAACAATTACAACACATACGAGTTTCAAGGTAGGAAGAAGTTGGTTCTATCAACTACAACTTGGATTGGTGGGAAAAATAGATTCTTGGGGATTGCATACCTTGTTGTTGGTGGACTATCCTTGTTCTGTGCTATAGGATTCATTCTTCTGTATGTGATCAAGCCAAGGTAAAGGAAATATTTTGCTTTTTCTATACTACTTTATGGTTCTACATTTATTTTTTATGAGTTAAGATCATGATTTTACATTATGAGATGTGAAATGCTAGCGACACATTCTGTAACACTAGCATTTGAATACGCTCTTTTCTATTGGTTGAAATTGACAAGTTCTGATAAAATTTATGTTAGGAAATTAATATGGCTACATAGTAAAGAAAAGCTGAAACATTTTTGGTTATTTGTAAGTAGCAAATGTGAGCTAACATTACTATATTGCTCTTTTTGCAGACCTCTCGGGGATCCATCCTACTTATCATGGAACAGAAATCCAGGGATCTTAAAATGA

Protein sequence

>MS.gene85138.t1

MMDMTSSKDGQSPPNSKKTSKKPKYSRFSQQELPAWKPILTPGWVIATFTAIGIIFIPIGLASLFSSGKVVEAEFRYDETCLSPSDAKDAVAYIKSDTTNKTCTHKWIVEQKMQAPVFIYYQLDNYYQNHRRYVKSRNDKQLWRKSAEGQTDHCDPVDKTEGKEPIVPCGLIAWSMFNDTYKFSMDNKDLTVNKKNIAWGSDKNSKFGREVYPKNFQSGGLIGGAKLNESIPLSEQEDLIVWMRTAALPTFRKLYGKIESDLEVNDEIEILIQNNYNTYEFQGRKKLVLSTTTWIGGKNRFLGIAYLVVGGLSLFCAIGFILLYVIKPRPLGDPSYLSWNRNPGILK