Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95523.t1 | XP_003599263.1 | 96.6 | 380 | 7 | 2 | 1 | 374 | 1 | 380 | 1.50E-191 | 678.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95523.t1 | Q9SFB3 | 65.8 | 386 | 108 | 5 | 1 | 374 | 1 | 374 | 9.8e-139 | 494.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95523.t1 | G7IWV1 | 96.6 | 380 | 7 | 2 | 1 | 374 | 1 | 380 | 1.1e-191 | 678.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene95523 | 0.909029 | 8.95E-82 | -1.69E-46 |
| MS.gene049171 | MS.gene95523 | 0.847382 | 1.20E-59 | -1.69E-46 |
| MS.gene049217 | MS.gene95523 | 0.832124 | 1.13E-55 | -1.69E-46 |
| MS.gene049222 | MS.gene95523 | 0.837265 | 5.76E-57 | -1.69E-46 |
| MS.gene049285 | MS.gene95523 | 0.818806 | 1.62E-52 | -1.69E-46 |
| MS.gene04938 | MS.gene95523 | 0.803341 | 3.65E-49 | -1.69E-46 |
| MS.gene04939 | MS.gene95523 | 0.837178 | 6.06E-57 | -1.69E-46 |
| MS.gene049427 | MS.gene95523 | 0.821522 | 3.86E-53 | -1.69E-46 |
| MS.gene049488 | MS.gene95523 | 0.835657 | 1.48E-56 | -1.69E-46 |
| MS.gene049609 | MS.gene95523 | 0.865423 | 5.97E-65 | -1.69E-46 |
| MS.gene049615 | MS.gene95523 | 0.817131 | 3.87E-52 | -1.69E-46 |
| MS.gene049633 | MS.gene95523 | 0.813177 | 2.92E-51 | -1.69E-46 |
| MS.gene049805 | MS.gene95523 | 0.879017 | 1.76E-69 | -1.69E-46 |
| MS.gene050163 | MS.gene95523 | 0.823686 | 1.21E-53 | -1.69E-46 |
| MS.gene050165 | MS.gene95523 | 0.801159 | 1.03E-48 | -1.69E-46 |
| MS.gene050444 | MS.gene95523 | 0.801131 | 1.04E-48 | -1.69E-46 |
| MS.gene050504 | MS.gene95523 | 0.804651 | 1.95E-49 | -1.69E-46 |
| MS.gene050507 | MS.gene95523 | 0.83158 | 1.54E-55 | -1.69E-46 |
| MS.gene050577 | MS.gene95523 | 0.83188 | 1.30E-55 | -1.69E-46 |
| MS.gene050593 | MS.gene95523 | 0.860876 | 1.52E-63 | -1.69E-46 |
| MS.gene050612 | MS.gene95523 | 0.803283 | 3.75E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene95523 | 0.856413 | 3.27E-62 | -1.69E-46 |
| MS.gene050675 | MS.gene95523 | 0.833795 | 4.34E-56 | -1.69E-46 |
| MS.gene050699 | MS.gene95523 | 0.849904 | 2.40E-60 | -1.69E-46 |
| MS.gene050747 | MS.gene95523 | 0.856911 | 2.34E-62 | -1.69E-46 |
| MS.gene050772 | MS.gene95523 | 0.839719 | 1.34E-57 | -1.69E-46 |
| MS.gene050781 | MS.gene95523 | 0.801624 | 8.25E-49 | -1.69E-46 |
| MS.gene050783 | MS.gene95523 | 0.801717 | 7.89E-49 | -1.69E-46 |
| MS.gene05080 | MS.gene95523 | 0.815116 | 1.09E-51 | -1.69E-46 |
| MS.gene050812 | MS.gene95523 | 0.81136 | 7.28E-51 | -1.69E-46 |
| MS.gene05081 | MS.gene95523 | 0.821169 | 4.66E-53 | -1.69E-46 |
| MS.gene050950 | MS.gene95523 | 0.839282 | 1.74E-57 | -1.69E-46 |
| MS.gene050986 | MS.gene95523 | 0.804297 | 2.31E-49 | -1.69E-46 |
| MS.gene05100 | MS.gene95523 | 0.801628 | 8.23E-49 | -1.69E-46 |
| MS.gene05105 | MS.gene95523 | 0.848493 | 5.92E-60 | -1.69E-46 |
| MS.gene051336 | MS.gene95523 | 0.817898 | 2.60E-52 | -1.69E-46 |
| MS.gene051387 | MS.gene95523 | 0.862662 | 4.32E-64 | -1.69E-46 |
| MS.gene051438 | MS.gene95523 | 0.808309 | 3.30E-50 | -1.69E-46 |
| MS.gene051525 | MS.gene95523 | 0.818367 | 2.03E-52 | -1.69E-46 |
| MS.gene051666 | MS.gene95523 | 0.855747 | 5.13E-62 | -1.69E-46 |
| MS.gene051692 | MS.gene95523 | 0.808391 | 3.17E-50 | -1.69E-46 |
| MS.gene051694 | MS.gene95523 | 0.803288 | 3.74E-49 | -1.69E-46 |
| MS.gene051838 | MS.gene95523 | 0.847282 | 1.28E-59 | -1.69E-46 |
| MS.gene052164 | MS.gene95523 | 0.819806 | 9.57E-53 | -1.69E-46 |
| MS.gene052188 | MS.gene95523 | 0.80637 | 8.50E-50 | -1.69E-46 |
| MS.gene052310 | MS.gene95523 | 0.807295 | 5.42E-50 | -1.69E-46 |
| MS.gene052322 | MS.gene95523 | 0.831349 | 1.76E-55 | -1.69E-46 |
| MS.gene052414 | MS.gene95523 | 0.808885 | 2.49E-50 | -1.69E-46 |
| MS.gene052421 | MS.gene95523 | 0.857969 | 1.14E-62 | -1.69E-46 |
| MS.gene052481 | MS.gene95523 | 0.836878 | 7.23E-57 | -1.69E-46 |
| MS.gene052484 | MS.gene95523 | 0.82028 | 7.46E-53 | -1.69E-46 |
| MS.gene052485 | MS.gene95523 | 0.806715 | 7.19E-50 | -1.69E-46 |
| MS.gene052501 | MS.gene95523 | 0.861335 | 1.10E-63 | -1.69E-46 |
| MS.gene052503 | MS.gene95523 | 0.854056 | 1.59E-61 | -1.69E-46 |
| MS.gene052505 | MS.gene95523 | 0.854106 | 1.54E-61 | -1.69E-46 |
| MS.gene052615 | MS.gene95523 | 0.867753 | 1.08E-65 | -1.69E-46 |
| MS.gene052823 | MS.gene95523 | 0.842426 | 2.60E-58 | -1.69E-46 |
| MS.gene052825 | MS.gene95523 | 0.843628 | 1.25E-58 | -1.69E-46 |
| MS.gene052966 | MS.gene95523 | 0.805674 | 1.19E-49 | -1.69E-46 |
| MS.gene052982 | MS.gene95523 | 0.855367 | 6.62E-62 | -1.69E-46 |
| MS.gene053203 | MS.gene95523 | 0.832384 | 9.75E-56 | -1.69E-46 |
| MS.gene053207 | MS.gene95523 | 0.866546 | 2.63E-65 | -1.69E-46 |
| MS.gene053213 | MS.gene95523 | 0.833386 | 5.50E-56 | -1.69E-46 |
| MS.gene053286 | MS.gene95523 | 0.820279 | 7.46E-53 | -1.69E-46 |
| MS.gene053322 | MS.gene95523 | 0.80549 | 1.30E-49 | -1.69E-46 |
| MS.gene053436 | MS.gene95523 | 0.832475 | 9.26E-56 | -1.69E-46 |
| MS.gene053480 | MS.gene95523 | 0.821459 | 3.99E-53 | -1.69E-46 |
| MS.gene053574 | MS.gene95523 | 0.814279 | 1.67E-51 | -1.69E-46 |
| MS.gene053579 | MS.gene95523 | 0.825822 | 3.80E-54 | -1.69E-46 |
| MS.gene053632 | MS.gene95523 | 0.870466 | 1.43E-66 | -1.69E-46 |
| MS.gene053824 | MS.gene95523 | 0.810715 | 1.00E-50 | -1.69E-46 |
| MS.gene053873 | MS.gene95523 | 0.809783 | 1.60E-50 | -1.69E-46 |
| MS.gene053912 | MS.gene95523 | 0.821045 | 4.98E-53 | -1.69E-46 |
| MS.gene053915 | MS.gene95523 | 0.811845 | 5.71E-51 | -1.69E-46 |
| MS.gene054107 | MS.gene95523 | 0.816545 | 5.23E-52 | -1.69E-46 |
| MS.gene054595 | MS.gene95523 | 0.832238 | 1.06E-55 | -1.69E-46 |
| MS.gene054600 | MS.gene95523 | 0.845327 | 4.35E-59 | -1.69E-46 |
| MS.gene054642 | MS.gene95523 | 0.806766 | 7.01E-50 | -1.69E-46 |
| MS.gene05470 | MS.gene95523 | 0.817352 | 3.45E-52 | -1.69E-46 |
| MS.gene054884 | MS.gene95523 | -0.831097 | 2.02E-55 | -1.69E-46 |
| MS.gene054927 | MS.gene95523 | 0.843317 | 1.51E-58 | -1.69E-46 |
| MS.gene05505 | MS.gene95523 | 0.81906 | 1.42E-52 | -1.69E-46 |
| MS.gene055206 | MS.gene95523 | 0.837255 | 5.79E-57 | -1.69E-46 |
| MS.gene055362 | MS.gene95523 | 0.8106 | 1.06E-50 | -1.69E-46 |
| MS.gene055370 | MS.gene95523 | 0.806341 | 8.62E-50 | -1.69E-46 |
| MS.gene055412 | MS.gene95523 | 0.818378 | 2.02E-52 | -1.69E-46 |
| MS.gene055502 | MS.gene95523 | 0.836702 | 8.02E-57 | -1.69E-46 |
| MS.gene055539 | MS.gene95523 | 0.844619 | 6.76E-59 | -1.69E-46 |
| MS.gene055577 | MS.gene95523 | 0.834101 | 3.64E-56 | -1.69E-46 |
| MS.gene055647 | MS.gene95523 | 0.81587 | 7.41E-52 | -1.69E-46 |
| MS.gene055741 | MS.gene95523 | 0.8252 | 5.34E-54 | -1.69E-46 |
| MS.gene055744 | MS.gene95523 | 0.823917 | 1.07E-53 | -1.69E-46 |
| MS.gene055941 | MS.gene95523 | 0.85355 | 2.22E-61 | -1.69E-46 |
| MS.gene056040 | MS.gene95523 | 0.82789 | 1.22E-54 | -1.69E-46 |
| MS.gene056083 | MS.gene95523 | 0.806315 | 8.73E-50 | -1.69E-46 |
| MS.gene056407 | MS.gene95523 | 0.832285 | 1.03E-55 | -1.69E-46 |
| MS.gene056497 | MS.gene95523 | 0.80335 | 3.64E-49 | -1.69E-46 |
| MS.gene056514 | MS.gene95523 | 0.818928 | 1.52E-52 | -1.69E-46 |
| MS.gene056610 | MS.gene95523 | 0.815053 | 1.13E-51 | -1.69E-46 |
| MS.gene05664 | MS.gene95523 | 0.837592 | 4.75E-57 | -1.69E-46 |
| MS.gene056657 | MS.gene95523 | 0.802702 | 4.95E-49 | -1.69E-46 |
| MS.gene05666 | MS.gene95523 | 0.818999 | 1.46E-52 | -1.69E-46 |
| MS.gene056692 | MS.gene95523 | 0.818292 | 2.12E-52 | -1.69E-46 |
| MS.gene056796 | MS.gene95523 | 0.813068 | 3.09E-51 | -1.69E-46 |
| MS.gene056877 | MS.gene95523 | 0.855139 | 7.71E-62 | -1.69E-46 |
| MS.gene057011 | MS.gene95523 | 0.801429 | 9.04E-49 | -1.69E-46 |
| MS.gene057076 | MS.gene95523 | 0.826193 | 3.10E-54 | -1.69E-46 |
| MS.gene057124 | MS.gene95523 | 0.856506 | 3.07E-62 | -1.69E-46 |
| MS.gene057129 | MS.gene95523 | 0.809185 | 2.14E-50 | -1.69E-46 |
| MS.gene057146 | MS.gene95523 | 0.820121 | 8.11E-53 | -1.69E-46 |
| MS.gene057196 | MS.gene95523 | 0.822808 | 1.94E-53 | -1.69E-46 |
| MS.gene057331 | MS.gene95523 | 0.808221 | 3.45E-50 | -1.69E-46 |
| MS.gene057332 | MS.gene95523 | 0.83119 | 1.92E-55 | -1.69E-46 |
| MS.gene057416 | MS.gene95523 | 0.872048 | 4.29E-67 | -1.69E-46 |
| MS.gene057658 | MS.gene95523 | 0.858944 | 5.82E-63 | -1.69E-46 |
| MS.gene057734 | MS.gene95523 | 0.825447 | 4.67E-54 | -1.69E-46 |
| MS.gene057749 | MS.gene95523 | 0.838874 | 2.22E-57 | -1.69E-46 |
| MS.gene057823 | MS.gene95523 | 0.847644 | 1.01E-59 | -1.69E-46 |
| MS.gene057825 | MS.gene95523 | 0.804054 | 2.60E-49 | -1.69E-46 |
| MS.gene057831 | MS.gene95523 | 0.858666 | 7.04E-63 | -1.69E-46 |
| MS.gene057856 | MS.gene95523 | 0.820549 | 6.47E-53 | -1.69E-46 |
| MS.gene058019 | MS.gene95523 | 0.884278 | 2.20E-71 | -1.69E-46 |
| MS.gene058233 | MS.gene95523 | 0.800981 | 1.12E-48 | -1.69E-46 |
| MS.gene058338 | MS.gene95523 | 0.803107 | 4.08E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene95523 | 0.836711 | 7.97E-57 | -1.69E-46 |
| MS.gene058444 | MS.gene95523 | 0.825306 | 5.04E-54 | -1.69E-46 |
| MS.gene058544 | MS.gene95523 | 0.838719 | 2.43E-57 | -1.69E-46 |
| MS.gene058660 | MS.gene95523 | 0.801642 | 8.18E-49 | -1.69E-46 |
| MS.gene058700 | MS.gene95523 | 0.834419 | 3.03E-56 | -1.69E-46 |
| MS.gene058838 | MS.gene95523 | 0.878851 | 2.01E-69 | -1.69E-46 |
| MS.gene05883 | MS.gene95523 | 0.823488 | 1.35E-53 | -1.69E-46 |
| MS.gene05886 | MS.gene95523 | 0.81124 | 7.73E-51 | -1.69E-46 |
| MS.gene058948 | MS.gene95523 | 0.81925 | 1.28E-52 | -1.69E-46 |
| MS.gene058993 | MS.gene95523 | 0.825155 | 5.47E-54 | -1.69E-46 |
| MS.gene059023 | MS.gene95523 | 0.851882 | 6.64E-61 | -1.69E-46 |
| MS.gene059141 | MS.gene95523 | 0.814183 | 1.75E-51 | -1.69E-46 |
| MS.gene05914 | MS.gene95523 | 0.80497 | 1.67E-49 | -1.69E-46 |
| MS.gene05934 | MS.gene95523 | 0.846232 | 2.47E-59 | -1.69E-46 |
| MS.gene059455 | MS.gene95523 | 0.86282 | 3.86E-64 | -1.69E-46 |
| MS.gene059536 | MS.gene95523 | 0.812094 | 5.04E-51 | -1.69E-46 |
| MS.gene059676 | MS.gene95523 | 0.828749 | 7.56E-55 | -1.69E-46 |
| MS.gene059677 | MS.gene95523 | 0.826439 | 2.71E-54 | -1.69E-46 |
| MS.gene059688 | MS.gene95523 | 0.807617 | 4.63E-50 | -1.69E-46 |
| MS.gene059695 | MS.gene95523 | 0.803728 | 3.03E-49 | -1.69E-46 |
| MS.gene059718 | MS.gene95523 | 0.846547 | 2.03E-59 | -1.69E-46 |
| MS.gene059756 | MS.gene95523 | 0.830534 | 2.78E-55 | -1.69E-46 |
| MS.gene059801 | MS.gene95523 | 0.823674 | 1.22E-53 | -1.69E-46 |
| MS.gene059960 | MS.gene95523 | 0.817498 | 3.20E-52 | -1.69E-46 |
| MS.gene060403 | MS.gene95523 | 0.84814 | 7.41E-60 | -1.69E-46 |
| MS.gene060485 | MS.gene95523 | 0.816764 | 4.67E-52 | -1.69E-46 |
| MS.gene060762 | MS.gene95523 | 0.812826 | 3.49E-51 | -1.69E-46 |
| MS.gene060835 | MS.gene95523 | 0.855364 | 6.63E-62 | -1.69E-46 |
| MS.gene06092 | MS.gene95523 | 0.859017 | 5.53E-63 | -1.69E-46 |
| MS.gene061150 | MS.gene95523 | 0.855551 | 5.85E-62 | -1.69E-46 |
| MS.gene061200 | MS.gene95523 | 0.826778 | 2.25E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95523.t1 | MTR_3g030950 | 96.842 | 380 | 6 | 3 | 1 | 374 | 1 | 380 | 0.0 | 735 |
| MS.gene95523.t1 | MTR_3g030975 | 99.057 | 212 | 2 | 0 | 163 | 374 | 1 | 212 | 4.93e-152 | 427 |
| MS.gene95523.t1 | MTR_8g104810 | 89.062 | 64 | 7 | 0 | 96 | 159 | 43 | 106 | 6.92e-36 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95523.t1 | AT3G08010 | 67.708 | 384 | 104 | 5 | 1 | 374 | 1 | 374 | 0.0 | 520 |
Find 84 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAACATGTTTGGAGTTTA+AGG | 0.150458 | 3.4:-24378934 | None:intergenic |
| CTGAAGATTGTATTGGCTTC+TGG | 0.208718 | 3.4:+24383855 | MS.gene95523:CDS |
| CTAAAGAAGCGAATGTTTCT+AGG | 0.224379 | 3.4:-24379265 | None:intergenic |
| ATACTATTAATAACATTATT+AGG | 0.258304 | 3.4:-24379190 | None:intergenic |
| AATCATACTCACCCGTTTAC+TGG | 0.258872 | 3.4:-24380877 | None:intergenic |
| CTAGAAACATTCGCTTCTTT+AGG | 0.283849 | 3.4:+24379266 | MS.gene95523:CDS |
| GGAAGATTTGGATATGGTTC+TGG | 0.285877 | 3.4:+24382747 | MS.gene95523:CDS |
| TGGGCTAGATCTTGATTTAT+TGG | 0.288153 | 3.4:+24382767 | MS.gene95523:CDS |
| GGGCTAGATCTTGATTTATT+GGG | 0.315434 | 3.4:+24382768 | MS.gene95523:CDS |
| ATACTGTCAGGATCAGCTTC+TGG | 0.321460 | 3.4:-24379052 | None:intergenic |
| TCAGCCTCAGAGGGAAGATT+TGG | 0.364485 | 3.4:+24382735 | MS.gene95523:CDS |
| TGTTGCTATTTGTGATGAAC+TGG | 0.370001 | 3.4:+24379231 | MS.gene95523:CDS |
| CTTCAGAATCTAACTCATCT+TGG | 0.371396 | 3.4:-24383838 | None:intergenic |
| TTTCTGAGACAGAACATGTT+TGG | 0.377919 | 3.4:-24378943 | None:intergenic |
| GTCGCAAAAGGATTGTCTAA+TGG | 0.378728 | 3.4:-24382347 | None:intergenic |
| ATGCTAGAGGAAAGAAACTT+TGG | 0.380045 | 3.4:+24379116 | MS.gene95523:CDS |
| TCTCGTGCTAAAATATTATC+AGG | 0.382198 | 3.4:+24382840 | MS.gene95523:CDS |
| GAAGCAGCTAAGAAAGCTTC+TGG | 0.387670 | 3.4:+24383794 | MS.gene95523:CDS |
| TCAGAGGGAAGATTTGGATA+TGG | 0.394962 | 3.4:+24382741 | MS.gene95523:CDS |
| TTTCCTCTAGCATCAAGAAT+TGG | 0.395207 | 3.4:-24379106 | None:intergenic |
| TAAGAGCTCTTCCCAGTAAA+CGG | 0.396897 | 3.4:+24380865 | MS.gene95523:CDS |
| AATAATTTGTACGATTATAC+AGG | 0.404716 | 3.4:-24383902 | None:intergenic |
| TTAGATTCTGAAGATTGTAT+TGG | 0.414494 | 3.4:+24383848 | MS.gene95523:CDS |
| GAAGATGCAACAGCCAATCC+TGG | 0.417168 | 3.4:-24382819 | None:intergenic |
| AGATAACATGTTTCAGCAGT+TGG | 0.424045 | 3.4:-24379025 | None:intergenic |
| TACTGTCAGGATCAGCTTCT+GGG | 0.430219 | 3.4:-24379051 | None:intergenic |
| GAAACATCCTGGATTTCAAA+AGG | 0.431524 | 3.4:+24382307 | MS.gene95523:CDS |
| GAAGATTTGGATATGGTTCT+GGG | 0.431653 | 3.4:+24382748 | MS.gene95523:CDS |
| AACTAAAGAAGCTGAAGCTT+GGG | 0.435084 | 3.4:+24383772 | MS.gene95523:CDS |
| GATAACATGTTTCAGCAGTT+GGG | 0.444982 | 3.4:-24379024 | None:intergenic |
| GGAAAATGGGAATTTGATGA+TGG | 0.449750 | 3.4:-24378894 | None:intergenic |
| ATGTTTGGAGTTTAAGGAAG+TGG | 0.452226 | 3.4:-24378928 | None:intergenic |
| AATTATTACAAAAGCATGTA+AGG | 0.453031 | 3.4:+24380833 | MS.gene95523:CDS |
| GCGTGCAGTGTCCGTTTCAA+TGG | 0.453511 | 3.4:-24383678 | None:intergenic |
| CTAATGACTTTACCTGAGTA+AGG | 0.456324 | 3.4:-24382419 | None:intergenic |
| CAACTAAAGAAGCTGAAGCT+TGG | 0.463491 | 3.4:+24383771 | MS.gene95523:CDS |
| ATCCTGACAGTATATTAAGC+TGG | 0.466941 | 3.4:+24379062 | MS.gene95523:CDS |
| GTCTAATGGCAAAAGAGGCT+TGG | 0.468563 | 3.4:-24382333 | None:intergenic |
| CTAACTCATCTTGGATTGCT+AGG | 0.473543 | 3.4:-24383829 | None:intergenic |
| TCTTGTGGAGTTGAAGCTTA+GGG | 0.477118 | 3.4:-24378816 | None:intergenic |
| TGCTAGAGGAAAGAAACTTT+GGG | 0.479591 | 3.4:+24379117 | MS.gene95523:CDS |
| AAGAGCTCTTCCCAGTAAAC+GGG | 0.480174 | 3.4:+24380866 | MS.gene95523:CDS |
| TTCTTGTGGAGTTGAAGCTT+AGG | 0.480997 | 3.4:-24378817 | None:intergenic |
| AACAGCCAATCCTGGGATCA+AGG | 0.490579 | 3.4:-24382811 | None:intergenic |
| TTTGAAGAGGAGAGTTTGAT+GGG | 0.490670 | 3.4:-24378869 | None:intergenic |
| TCCCAGCTTAATATACTGTC+AGG | 0.490831 | 3.4:-24379064 | None:intergenic |
| AAATCTTCCCTCTGAGGCTG+AGG | 0.496486 | 3.4:-24382733 | None:intergenic |
| GGAGCTCTGTTCCATTGAAA+CGG | 0.498099 | 3.4:+24383667 | MS.gene95523:CDS |
| AGAGGAGAGTTTGATGGGGT+TGG | 0.499396 | 3.4:-24378864 | None:intergenic |
| AAATTCCAACTGAAAGAGTC+AGG | 0.502775 | 3.4:-24383706 | None:intergenic |
| CAGTATATTAAGCTGGGAGT+TGG | 0.503857 | 3.4:+24379069 | MS.gene95523:CDS |
| ATCATACTCACCCGTTTACT+GGG | 0.505577 | 3.4:-24380876 | None:intergenic |
| TTTGTTCAGTTACCTTACTC+AGG | 0.508695 | 3.4:+24382407 | MS.gene95523:CDS |
| GAAAATGGGAATTTGATGAT+GGG | 0.514894 | 3.4:-24378893 | None:intergenic |
| GGGTTGGTGTAGTTGAAAGA+TGG | 0.516225 | 3.4:-24378848 | None:intergenic |
| AGCTTCAGCTTCTTTAGTTG+AGG | 0.517831 | 3.4:-24383768 | None:intergenic |
| ACAAAAGCATGTAAGGAGCT+TGG | 0.520013 | 3.4:+24380840 | MS.gene95523:CDS |
| ACTGTATACACGAAACATCC+TGG | 0.520597 | 3.4:+24382296 | MS.gene95523:CDS |
| GGTTGGTGTAGTTGAAAGAT+GGG | 0.527581 | 3.4:-24378847 | None:intergenic |
| GAAGACCTTGATCCCAGGAT+TGG | 0.531133 | 3.4:+24382806 | MS.gene95523:CDS |
| AGACCAATTCTTGATGCTAG+AGG | 0.533980 | 3.4:+24379103 | MS.gene95523:CDS |
| AAGCGAATGTTTCTAGGCAC+AGG | 0.539819 | 3.4:-24379259 | None:intergenic |
| GGATTGTCTAATGGCAAAAG+AGG | 0.539986 | 3.4:-24382338 | None:intergenic |
| TCCTGACAGTATATTAAGCT+GGG | 0.544833 | 3.4:+24379063 | MS.gene95523:CDS |
| TATTATAGCCGTTCGAGAGG+AGG | 0.550876 | 3.4:+24382710 | MS.gene95523:intron |
| TACGATTATACAGGTGGAGG+TGG | 0.552896 | 3.4:-24383893 | None:intergenic |
| AAACATCCTGGATTTCAAAA+GGG | 0.557929 | 3.4:+24382308 | MS.gene95523:CDS |
| GACGAGAAGACCTTGATCCC+AGG | 0.562521 | 3.4:+24382801 | MS.gene95523:CDS |
| TCAGCTTCTTTAGTTGAGGT+AGG | 0.564251 | 3.4:-24383764 | None:intergenic |
| TATTAATAGTATCACTCTCA+AGG | 0.566789 | 3.4:+24379201 | MS.gene95523:CDS |
| CTTTATTATAGCCGTTCGAG+AGG | 0.585820 | 3.4:+24382707 | MS.gene95523:intron |
| AAGATGCAACAGCCAATCCT+GGG | 0.585967 | 3.4:-24382818 | None:intergenic |
| GTTGAAGCTTAGGGTAGCCA+TGG | 0.588559 | 3.4:-24378807 | None:intergenic |
| TTGTACGATTATACAGGTGG+AGG | 0.590003 | 3.4:-24383896 | None:intergenic |
| GGCTGAGGCCTCCTCTCGAA+CGG | 0.600823 | 3.4:-24382718 | None:intergenic |
| AGAGGAGGCCTCAGCCTCAG+AGG | 0.608008 | 3.4:+24382725 | MS.gene95523:CDS |
| GTTGGTGTAGTTGAAAGATG+GGG | 0.608423 | 3.4:-24378846 | None:intergenic |
| GAGGAGGCCTCAGCCTCAGA+GGG | 0.608556 | 3.4:+24382726 | MS.gene95523:CDS |
| AATTTGTACGATTATACAGG+TGG | 0.612404 | 3.4:-24383899 | None:intergenic |
| TTTCAGTTGGAATTTCGACT+CGG | 0.613028 | 3.4:+24383714 | MS.gene95523:CDS |
| TCTAACCTGACTCTTTCAGT+TGG | 0.624714 | 3.4:+24383701 | MS.gene95523:CDS |
| TTGAAGAGGAGAGTTTGATG+GGG | 0.646717 | 3.4:-24378868 | None:intergenic |
| ATATCCAAATCTTCCCTCTG+AGG | 0.670235 | 3.4:-24382739 | None:intergenic |
| GCAGCTAAGAAAGCTTCTGG+AGG | 0.687768 | 3.4:+24383797 | MS.gene95523:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACTATTAATAACATTATT+AGG | - | chr3.4:24379193-24379212 | None:intergenic | 10.0% |
| !!! | CTAATTATTTTTATATACTT+TGG | - | chr3.4:24380073-24380092 | None:intergenic | 10.0% |
| !! | ATATATGTTAGAGATTAAAT+TGG | + | chr3.4:24380253-24380272 | MS.gene95523:intron | 15.0% |
| !! | TAAAAAGAAAAAAAAAAGGT+TGG | + | chr3.4:24381338-24381357 | MS.gene95523:intron | 15.0% |
| !! | TAAAATGAAAAAAGAAACAA+GGG | - | chr3.4:24381775-24381794 | None:intergenic | 15.0% |
| !! | TTAAAATGAAAAAAGAAACA+AGG | - | chr3.4:24381776-24381795 | None:intergenic | 15.0% |
| !!! | TAAAAGTCATTTTTAAAACA+AGG | - | chr3.4:24383026-24383045 | None:intergenic | 15.0% |
| !!! | TTAACAACTATTTTTTGTTT+TGG | + | chr3.4:24381505-24381524 | MS.gene95523:intron | 15.0% |
| !! | AAAATGAAAAAAGAAACAAG+GGG | - | chr3.4:24381774-24381793 | None:intergenic | 20.0% |
| !! | AAATGTTCTTAGAAAGTAAA+TGG | - | chr3.4:24381078-24381097 | None:intergenic | 20.0% |
| !! | ACAAATTATAAACATGTCAT+AGG | - | chr3.4:24383417-24383436 | None:intergenic | 20.0% |
| !! | ACACTTTATAAACTCTATTT+AGG | - | chr3.4:24380419-24380438 | None:intergenic | 20.0% |
| !! | ACTATATCTTGTGTATTTAT+TGG | + | chr3.4:24380357-24380376 | MS.gene95523:intron | 20.0% |
| !! | AGTACTTATTGTTTATGTTA+CGG | + | chr3.4:24379308-24379327 | MS.gene95523:intron | 20.0% |
| !! | TAAAGTGATTAAACTGAATA+TGG | - | chr3.4:24381310-24381329 | None:intergenic | 20.0% |
| !! | TAATTAAGCACTTATGTATA+AGG | - | chr3.4:24383527-24383546 | None:intergenic | 20.0% |
| !! | TGAATTATGAAATGTTCATA+AGG | + | chr3.4:24379421-24379440 | MS.gene95523:intron | 20.0% |
| !!! | AATATTGATCTTCTTTGTTT+TGG | - | chr3.4:24381839-24381858 | None:intergenic | 20.0% |
| !!! | AATTATTACAAAAGCATGTA+AGG | + | chr3.4:24380833-24380852 | MS.gene95523:CDS | 20.0% |
| !!! | AATTATTGATTTCAACAAGA+TGG | - | chr3.4:24381866-24381885 | None:intergenic | 20.0% |
| !!! | ATACTTTGGGAATTAAATTA+AGG | - | chr3.4:24380059-24380078 | None:intergenic | 20.0% |
| !!! | ATATTGATCTTCTTTGTTTT+GGG | - | chr3.4:24381838-24381857 | None:intergenic | 20.0% |
| !!! | ATGAGTTTTCATATACTTTA+GGG | + | chr3.4:24380183-24380202 | MS.gene95523:intron | 20.0% |
| !!! | CAAAAAAATCTGAAACTAAT+GGG | + | chr3.4:24380586-24380605 | MS.gene95523:intron | 20.0% |
| !!! | TACTTTGGGAATTAAATTAA+GGG | - | chr3.4:24380058-24380077 | None:intergenic | 20.0% |
| !!! | TCAAAAAAATCTGAAACTAA+TGG | + | chr3.4:24380585-24380604 | MS.gene95523:intron | 20.0% |
| !!! | TTTGTAGCATCTTTTTTTTA+GGG | - | chr3.4:24380155-24380174 | None:intergenic | 20.0% |
| ! | AAAAATAGTTGTTAAGCGTT+TGG | - | chr3.4:24381500-24381519 | None:intergenic | 25.0% |
| ! | AAAATGTATGATAGCATCAT+AGG | - | chr3.4:24383147-24383166 | None:intergenic | 25.0% |
| ! | AAAGAAAAAAAAAAGGTTGG+AGG | + | chr3.4:24381341-24381360 | MS.gene95523:intron | 25.0% |
| ! | AAATGAAAAAAGAAACAAGG+GGG | - | chr3.4:24381773-24381792 | None:intergenic | 25.0% |
| ! | AAGAAAAAAAAAAGGTTGGA+GGG | + | chr3.4:24381342-24381361 | MS.gene95523:intron | 25.0% |
| ! | AGAATAAGTAACTACTTGTA+GGG | - | chr3.4:24379987-24380006 | None:intergenic | 25.0% |
| ! | ATAAAAAAACCATTATGCCA+TGG | + | chr3.4:24379929-24379948 | MS.gene95523:intron | 25.0% |
| ! | ATAAATGTTGACAAAAAAGC+TGG | + | chr3.4:24383262-24383281 | MS.gene95523:intron | 25.0% |
| ! | ATCATTTATTATGCTTACAC+TGG | + | chr3.4:24382531-24382550 | MS.gene95523:intron | 25.0% |
| ! | ATTTCTTTCATAAACTGTCT+TGG | - | chr3.4:24379691-24379710 | None:intergenic | 25.0% |
| ! | GCAAACTAATCCATTTATAT+CGG | - | chr3.4:24380964-24380983 | None:intergenic | 25.0% |
| ! | TAACTTATGCATAAACACTT+CGG | + | chr3.4:24383369-24383388 | MS.gene95523:intron | 25.0% |
| ! | TAAGGTAATTCTACAATCAA+AGG | - | chr3.4:24383509-24383528 | None:intergenic | 25.0% |
| ! | TAATAATAAAGCTAACACAC+TGG | + | chr3.4:24381560-24381579 | MS.gene95523:intron | 25.0% |
| ! | TAATGTTTCATCCAAGATAT+TGG | + | chr3.4:24381915-24381934 | MS.gene95523:intron | 25.0% |
| ! | TATTAATAGTATCACTCTCA+AGG | + | chr3.4:24379201-24379220 | MS.gene95523:CDS | 25.0% |
| ! | TGTTACATATTGTTAGTGTA+AGG | + | chr3.4:24380761-24380780 | MS.gene95523:intron | 25.0% |
| ! | TTCGATAAACTGATTAACTA+TGG | + | chr3.4:24379459-24379478 | MS.gene95523:intron | 25.0% |
| ! | TTTGTCTACAAATTCTATTC+AGG | - | chr3.4:24383296-24383315 | None:intergenic | 25.0% |
| !! | ACATGGTTTTTCATGTATTT+AGG | + | chr3.4:24382472-24382491 | MS.gene95523:intron | 25.0% |
| !! | ATAAAACACTGTGAATCTTT+TGG | + | chr3.4:24382168-24382187 | MS.gene95523:intron | 25.0% |
| !! | ATAAGTATTGTCAAACTGTT+TGG | + | chr3.4:24379520-24379539 | MS.gene95523:intron | 25.0% |
| !! | CATGGTTTTTCATGTATTTA+GGG | + | chr3.4:24382473-24382492 | MS.gene95523:intron | 25.0% |
| !! | GATGAGTTTTCATATACTTT+AGG | + | chr3.4:24380182-24380201 | MS.gene95523:intron | 25.0% |
| !! | TAAACTGAATATGGATTTTC+AGG | - | chr3.4:24381301-24381320 | None:intergenic | 25.0% |
| !! | TAAGTATTGTCAAACTGTTT+GGG | + | chr3.4:24379521-24379540 | MS.gene95523:intron | 25.0% |
| !! | TTAGATTCTGAAGATTGTAT+TGG | + | chr3.4:24383848-24383867 | MS.gene95523:CDS | 25.0% |
| !!! | AACGACTTCATATATTTTAG+CGG | + | chr3.4:24380215-24380234 | MS.gene95523:intron | 25.0% |
| !!! | ATATAAATGGATTAGTTTGC+TGG | + | chr3.4:24380964-24380983 | MS.gene95523:intron | 25.0% |
| !!! | CTTTATTTTCTCTGCATTTA+GGG | + | chr3.4:24380527-24380546 | MS.gene95523:intron | 25.0% |
| !!! | CTTTTTGTTAGCTTTTACAT+TGG | + | chr3.4:24380015-24380034 | MS.gene95523:intron | 25.0% |
| !!! | GTTTGTAGCATCTTTTTTTT+AGG | - | chr3.4:24380156-24380175 | None:intergenic | 25.0% |
| !!! | TAGATTTTAGCAAAACTGAT+TGG | - | chr3.4:24380459-24380478 | None:intergenic | 25.0% |
| !!! | TATTGATCTTCTTTGTTTTG+GGG | - | chr3.4:24381837-24381856 | None:intergenic | 25.0% |
| !!! | TGTTGGTTTTTATATGACTT+CGG | + | chr3.4:24381957-24381976 | MS.gene95523:intron | 25.0% |
| !!! | TTTTGGCTTGTTCAAAAAAA+AGG | + | chr3.4:24381662-24381681 | MS.gene95523:intron | 25.0% |
| AAACATCCTGGATTTCAAAA+GGG | + | chr3.4:24382308-24382327 | MS.gene95523:CDS | 30.0% | |
| AAATTTGTGAACAACGGAAA+GGG | + | chr3.4:24381399-24381418 | MS.gene95523:intron | 30.0% | |
| AACATTTAAAAGCTGATGTC+AGG | - | chr3.4:24382116-24382135 | None:intergenic | 30.0% | |
| AATGAAAAAAGAAACAAGGG+GGG | - | chr3.4:24381772-24381791 | None:intergenic | 30.0% | |
| AGAAAAAAAAAAGGTTGGAG+GGG | + | chr3.4:24381343-24381362 | MS.gene95523:intron | 30.0% | |
| ATAAAAGCTGTGACAGTAAA+TGG | - | chr3.4:24383638-24383657 | None:intergenic | 30.0% | |
| CAAGTAGTTACTTATTCTGT+TGG | + | chr3.4:24379989-24380008 | MS.gene95523:intron | 30.0% | |
| CAGAATAAGTAACTACTTGT+AGG | - | chr3.4:24379988-24380007 | None:intergenic | 30.0% | |
| CATGTAAGTCATGTTATGTT+TGG | - | chr3.4:24380743-24380762 | None:intergenic | 30.0% | |
| CCTAAATGCAGAGAAAATAA+AGG | - | chr3.4:24380529-24380548 | None:intergenic | 30.0% | |
| CTGTAGAAATTTGTGAACAA+CGG | + | chr3.4:24381393-24381412 | MS.gene95523:intron | 30.0% | |
| GTAGATATTTGATTGTGATG+TGG | + | chr3.4:24381365-24381384 | MS.gene95523:intron | 30.0% | |
| GTTAAGAAATATGCATACTC+TGG | - | chr3.4:24383353-24383372 | None:intergenic | 30.0% | |
| GTTGTTCACAAATTTCTACA+GGG | - | chr3.4:24381394-24381413 | None:intergenic | 30.0% | |
| TAATTGGCAATAAAACCAAG+TGG | + | chr3.4:24381008-24381027 | MS.gene95523:intron | 30.0% | |
| TCAAACACATTGTTGATATG+TGG | + | chr3.4:24383557-24383576 | MS.gene95523:intron | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | - | chr3.4:24379342-24379361 | None:intergenic | 30.0% | |
| TCTCGTGCTAAAATATTATC+AGG | + | chr3.4:24382840-24382859 | MS.gene95523:CDS | 30.0% | |
| TGTGATTCTCTGTAACATTA+AGG | - | chr3.4:24379856-24379875 | None:intergenic | 30.0% | |
| TTCTCCAAGACAGTTTAAAA+GGG | + | chr3.4:24379605-24379624 | MS.gene95523:intron | 30.0% | |
| TTTGTCAGAAAATGTACTTC+TGG | - | chr3.4:24382021-24382040 | None:intergenic | 30.0% | |
| ! | AAACTTCCAGAAGATCTTTT+TGG | + | chr3.4:24382371-24382390 | MS.gene95523:CDS | 30.0% |
| ! | AATTTTACTTTGCATGTGAG+TGG | + | chr3.4:24381113-24381132 | MS.gene95523:intron | 30.0% |
| ! | AGTTAGAGCATCCAAAAATT+TGG | + | chr3.4:24381740-24381759 | MS.gene95523:intron | 30.0% |
| ! | GAAAATGGGAATTTGATGAT+GGG | - | chr3.4:24378896-24378915 | None:intergenic | 30.0% |
| ! | GCAATGAAATTTTGAATCCA+CGG | - | chr3.4:24380913-24380932 | None:intergenic | 30.0% |
| ! | GCCTTTTCATAAGAAACTAA+GGG | - | chr3.4:24380612-24380631 | None:intergenic | 30.0% |
| ! | TCTTTAAGAATTGCATGACA+TGG | + | chr3.4:24382455-24382474 | MS.gene95523:intron | 30.0% |
| ! | TGCCTTTTCATAAGAAACTA+AGG | - | chr3.4:24380613-24380632 | None:intergenic | 30.0% |
| ! | TTTAAGGAAGTGGTTTTTGT+TGG | - | chr3.4:24378921-24378940 | None:intergenic | 30.0% |
| !! | AAGATCTTTTTGGTGAAAGA+TGG | + | chr3.4:24382381-24382400 | MS.gene95523:CDS | 30.0% |
| !! | AGATCTTTTTGGTGAAAGAT+GGG | + | chr3.4:24382382-24382401 | MS.gene95523:CDS | 30.0% |
| !! | AGTGCTTGTCATTACTTTTA+TGG | + | chr3.4:24382255-24382274 | MS.gene95523:intron | 30.0% |
| !! | GGGTTTGAAATAAAGTTTTG+CGG | - | chr3.4:24379967-24379986 | None:intergenic | 30.0% |
| !! | GTCATTACTTTTATGGTTAG+AGG | + | chr3.4:24382262-24382281 | MS.gene95523:CDS | 30.0% |
| !! | GTGTAGGTTTTTAGAAATGT+GGG | + | chr3.4:24382072-24382091 | MS.gene95523:intron | 30.0% |
| !! | TGTAGGTTTTTAGAAATGTG+GGG | + | chr3.4:24382073-24382092 | MS.gene95523:intron | 30.0% |
| !!! | ATTCCTCTTGTTTTAGTACA+AGG | + | chr3.4:24382622-24382641 | MS.gene95523:intron | 30.0% |
| !!! | ATTGATCTTCTTTGTTTTGG+GGG | - | chr3.4:24381836-24381855 | None:intergenic | 30.0% |
| !!! | CCTTTATTTTCTCTGCATTT+AGG | + | chr3.4:24380526-24380545 | MS.gene95523:intron | 30.0% |
| !!! | TGTTAGCTTTTACATTGGTA+GGG | + | chr3.4:24380020-24380039 | MS.gene95523:intron | 30.0% |
| !!! | TTGTTAGCTTTTACATTGGT+AGG | + | chr3.4:24380019-24380038 | MS.gene95523:intron | 30.0% |
| AAACCTTGGATCAAAAGCTT+AGG | + | chr3.4:24381049-24381068 | MS.gene95523:intron | 35.0% | |
| AAATTCCAACTGAAAGAGTC+AGG | - | chr3.4:24383709-24383728 | None:intergenic | 35.0% | |
| AACCTTGGATCAAAAGCTTA+GGG | + | chr3.4:24381050-24381069 | MS.gene95523:intron | 35.0% | |
| AACTAAAGAAGCTGAAGCTT+GGG | + | chr3.4:24383772-24383791 | MS.gene95523:CDS | 35.0% | |
| AATTTGTGAACAACGGAAAG+GGG | + | chr3.4:24381400-24381419 | MS.gene95523:intron | 35.0% | |
| AGATAACATGTTTCAGCAGT+TGG | - | chr3.4:24379028-24379047 | None:intergenic | 35.0% | |
| ATAGTTGAGTAGATGACGTA+TGG | - | chr3.4:24380342-24380361 | None:intergenic | 35.0% | |
| ATCCTGACAGTATATTAAGC+TGG | + | chr3.4:24379062-24379081 | MS.gene95523:CDS | 35.0% | |
| ATGCTAGAGGAAAGAAACTT+TGG | + | chr3.4:24379116-24379135 | MS.gene95523:CDS | 35.0% | |
| CATAAACTGTCTTGGAGAAA+TGG | - | chr3.4:24379683-24379702 | None:intergenic | 35.0% | |
| CGTTGTTCACAAATTTCTAC+AGG | - | chr3.4:24381395-24381414 | None:intergenic | 35.0% | |
| CTAAAGAAGCGAATGTTTCT+AGG | - | chr3.4:24379268-24379287 | None:intergenic | 35.0% | |
| CTAATCCATTTATATCGGCA+AGG | - | chr3.4:24380959-24380978 | None:intergenic | 35.0% | |
| CTAATGACTTTACCTGAGTA+AGG | - | chr3.4:24382422-24382441 | None:intergenic | 35.0% | |
| CTACAATCAAAGGAGGAATT+TGG | - | chr3.4:24383499-24383518 | None:intergenic | 35.0% | |
| CTAGAAACATTCGCTTCTTT+AGG | + | chr3.4:24379266-24379285 | MS.gene95523:CDS | 35.0% | |
| CTTACTGTTTACTTACTCAC+TGG | + | chr3.4:24379801-24379820 | MS.gene95523:intron | 35.0% | |
| CTTCAGAATCTAACTCATCT+TGG | - | chr3.4:24383841-24383860 | None:intergenic | 35.0% | |
| CTTTCACCAAAAAGATCTTC+TGG | - | chr3.4:24382380-24382399 | None:intergenic | 35.0% | |
| GAAACATCCTGGATTTCAAA+AGG | + | chr3.4:24382307-24382326 | MS.gene95523:CDS | 35.0% | |
| GAAATTTGTGAACAACGGAA+AGG | + | chr3.4:24381398-24381417 | MS.gene95523:intron | 35.0% | |
| GAAGATTTGGATATGGTTCT+GGG | + | chr3.4:24382748-24382767 | MS.gene95523:CDS | 35.0% | |
| GAAGCGTATAAAATACACAC+CGG | - | chr3.4:24382221-24382240 | None:intergenic | 35.0% | |
| GAGTATGCTTTCCAATATCT+TGG | - | chr3.4:24381929-24381948 | None:intergenic | 35.0% | |
| GATAACATGTTTCAGCAGTT+GGG | - | chr3.4:24379027-24379046 | None:intergenic | 35.0% | |
| GCCCTTAGTTTCTTATGAAA+AGG | + | chr3.4:24380608-24380627 | MS.gene95523:intron | 35.0% | |
| GCTAGAGTGACATTTAGTTA+TGG | + | chr3.4:24381135-24381154 | MS.gene95523:intron | 35.0% | |
| GGAAAATGGGAATTTGATGA+TGG | - | chr3.4:24378897-24378916 | None:intergenic | 35.0% | |
| GGGCTAGATCTTGATTTATT+GGG | + | chr3.4:24382768-24382787 | MS.gene95523:CDS | 35.0% | |
| GGTAATTCTACAATCAAAGG+AGG | - | chr3.4:24383506-24383525 | None:intergenic | 35.0% | |
| GTTCTCCAAGACAGTTTAAA+AGG | + | chr3.4:24379604-24379623 | MS.gene95523:intron | 35.0% | |
| TAGAGTGACAATTACATGCA+TGG | + | chr3.4:24380293-24380312 | MS.gene95523:intron | 35.0% | |
| TCCTGACAGTATATTAAGCT+GGG | + | chr3.4:24379063-24379082 | MS.gene95523:CDS | 35.0% | |
| TCTAAAAACCTACACGTTTC+TGG | - | chr3.4:24382067-24382086 | None:intergenic | 35.0% | |
| TGATTAACTATGGACCTGTT+TGG | + | chr3.4:24379469-24379488 | MS.gene95523:intron | 35.0% | |
| TGCTAGAGGAAAGAAACTTT+GGG | + | chr3.4:24379117-24379136 | MS.gene95523:CDS | 35.0% | |
| TGCTCAGCAGAAAACTATAT+AGG | + | chr3.4:24380930-24380949 | MS.gene95523:intron | 35.0% | |
| TTTAAAAGCTGATGTCAGGA+AGG | - | chr3.4:24382112-24382131 | None:intergenic | 35.0% | |
| TTTAGCAAAACTGATTGGCA+AGG | - | chr3.4:24380454-24380473 | None:intergenic | 35.0% | |
| TTTCAGTTGGAATTTCGACT+CGG | + | chr3.4:24383714-24383733 | MS.gene95523:CDS | 35.0% | |
| TTTCCTCTAGCATCAAGAAT+TGG | - | chr3.4:24379109-24379128 | None:intergenic | 35.0% | |
| TTTGAAGAGGAGAGTTTGAT+GGG | - | chr3.4:24378872-24378891 | None:intergenic | 35.0% | |
| TTTGTTCAGTTACCTTACTC+AGG | + | chr3.4:24382407-24382426 | MS.gene95523:CDS | 35.0% | |
| ! | ACTGTCACAGCTTTTATGAA+TGG | + | chr3.4:24383641-24383660 | MS.gene95523:intron | 35.0% |
| ! | ATGTTTGGAGTTTAAGGAAG+TGG | - | chr3.4:24378931-24378950 | None:intergenic | 35.0% |
| ! | CACAGCTTTTATGAATGGAT+TGG | + | chr3.4:24383646-24383665 | MS.gene95523:intron | 35.0% |
| ! | CAGAACATGTTTGGAGTTTA+AGG | - | chr3.4:24378937-24378956 | None:intergenic | 35.0% |
| ! | GAGGTCTGCAATTTCAATTT+TGG | + | chr3.4:24381645-24381664 | MS.gene95523:intron | 35.0% |
| ! | GGGGGAATAAACCAAATTTT+TGG | - | chr3.4:24381754-24381773 | None:intergenic | 35.0% |
| ! | GGTTTTTGTTGGAGGAAAAT+GGG | - | chr3.4:24378910-24378929 | None:intergenic | 35.0% |
| ! | TAAGCTTTTGATCCAAGGTT+TGG | - | chr3.4:24381050-24381069 | None:intergenic | 35.0% |
| ! | TGACAATCTGAGACACTAAT+TGG | + | chr3.4:24380992-24381011 | MS.gene95523:intron | 35.0% |
| ! | TGAGGTAGGACTTTTCTTAT+AGG | - | chr3.4:24383753-24383772 | None:intergenic | 35.0% |
| ! | TGGGCTAGATCTTGATTTAT+TGG | + | chr3.4:24382767-24382786 | MS.gene95523:CDS | 35.0% |
| ! | TGGTTTTTGTTGGAGGAAAA+TGG | - | chr3.4:24378911-24378930 | None:intergenic | 35.0% |
| !! | AGTAATGACAAGCACTGAAA+AGG | - | chr3.4:24382251-24382270 | None:intergenic | 35.0% |
| !! | ATTGATCAAAGAGAAGTGCT+AGG | - | chr3.4:24383213-24383232 | None:intergenic | 35.0% |
| !! | CGATGTTAGTTTGTTTGGAT+TGG | + | chr3.4:24381462-24381481 | MS.gene95523:intron | 35.0% |
| !! | CGTGTAGGTTTTTAGAAATG+TGG | + | chr3.4:24382071-24382090 | MS.gene95523:intron | 35.0% |
| !! | GTAGGTTTTTAGAAATGTGG+GGG | + | chr3.4:24382074-24382093 | MS.gene95523:intron | 35.0% |
| !! | TAGGTCGATGTTAGTTTGTT+TGG | + | chr3.4:24381457-24381476 | MS.gene95523:intron | 35.0% |
| !! | TGGTGTCTTTAAGACATGTT+GGG | + | chr3.4:24380643-24380662 | MS.gene95523:intron | 35.0% |
| !! | TGTTGCTATTTGTGATGAAC+TGG | + | chr3.4:24379231-24379250 | MS.gene95523:CDS | 35.0% |
| !! | TTTCTGAGACAGAACATGTT+TGG | - | chr3.4:24378946-24378965 | None:intergenic | 35.0% |
| !! | TTTTAGAAATGTGGGGGATT+GGG | + | chr3.4:24382080-24382099 | MS.gene95523:intron | 35.0% |
| !! | TTTTGAAGAGGAGAGTTTGA+TGG | - | chr3.4:24378873-24378892 | None:intergenic | 35.0% |
| !! | TTTTTAGAAATGTGGGGGAT+TGG | + | chr3.4:24382079-24382098 | MS.gene95523:intron | 35.0% |
| !!! | GTGGTTTTAAATAGTGGTTG+CGG | + | chr3.4:24379829-24379848 | MS.gene95523:intron | 35.0% |
| !!! | TTTGATGATGGGTTTTGAAG+AGG | - | chr3.4:24378885-24378904 | None:intergenic | 35.0% |
| AAATCTAGGCCATGGCATAA+TGG | - | chr3.4:24379941-24379960 | None:intergenic | 40.0% | |
| AATCATACTCACCCGTTTAC+TGG | - | chr3.4:24380880-24380899 | None:intergenic | 40.0% | |
| ACCTTGGATCAAAAGCTTAG+GGG | + | chr3.4:24381051-24381070 | MS.gene95523:intron | 40.0% | |
| ACTGTATACACGAAACATCC+TGG | + | chr3.4:24382296-24382315 | MS.gene95523:CDS | 40.0% | |
| AGACATGTTGGGATTTCACA+TGG | + | chr3.4:24380654-24380673 | MS.gene95523:intron | 40.0% | |
| AGACCAATTCTTGATGCTAG+AGG | + | chr3.4:24379103-24379122 | MS.gene95523:CDS | 40.0% | |
| AGCATACTCATCTAGACTGT+TGG | + | chr3.4:24381940-24381959 | MS.gene95523:intron | 40.0% | |
| AGCTTCAGCTTCTTTAGTTG+AGG | - | chr3.4:24383771-24383790 | None:intergenic | 40.0% | |
| ATATCCAAATCTTCCCTCTG+AGG | - | chr3.4:24382742-24382761 | None:intergenic | 40.0% | |
| ATCATACTCACCCGTTTACT+GGG | - | chr3.4:24380879-24380898 | None:intergenic | 40.0% | |
| ATTTGTGAACAACGGAAAGG+GGG | + | chr3.4:24381401-24381420 | MS.gene95523:intron | 40.0% | |
| CAACACTTTGTAGTTAGCAC+CGG | - | chr3.4:24381716-24381735 | None:intergenic | 40.0% | |
| CAACTAAAGAAGCTGAAGCT+TGG | + | chr3.4:24383771-24383790 | MS.gene95523:CDS | 40.0% | |
| CAGTATATTAAGCTGGGAGT+TGG | + | chr3.4:24379069-24379088 | MS.gene95523:CDS | 40.0% | |
| CTAACTCATCTTGGATTGCT+AGG | - | chr3.4:24383832-24383851 | None:intergenic | 40.0% | |
| CTCTCGAACGGCTATAATAA+AGG | - | chr3.4:24382709-24382728 | None:intergenic | 40.0% | |
| CTGCAATTTCAAAGACTGTC+TGG | + | chr3.4:24381686-24381705 | MS.gene95523:intron | 40.0% | |
| CTTTATTATAGCCGTTCGAG+AGG | + | chr3.4:24382707-24382726 | MS.gene95523:intron | 40.0% | |
| GACATGTTGGGATTTCACAT+GGG | + | chr3.4:24380655-24380674 | MS.gene95523:intron | 40.0% | |
| GGAAGATTTGGATATGGTTC+TGG | + | chr3.4:24382747-24382766 | MS.gene95523:CDS | 40.0% | |
| GGATTGTCTAATGGCAAAAG+AGG | - | chr3.4:24382341-24382360 | None:intergenic | 40.0% | |
| GGTTTCCTTGCCGATATAAA+TGG | + | chr3.4:24380951-24380970 | MS.gene95523:intron | 40.0% | |
| GTCGCAAAAGGATTGTCTAA+TGG | - | chr3.4:24382350-24382369 | None:intergenic | 40.0% | |
| GTTGGTGTAGTTGAAAGATG+GGG | - | chr3.4:24378849-24378868 | None:intergenic | 40.0% | |
| TAAGAGCTCTTCCCAGTAAA+CGG | + | chr3.4:24380865-24380884 | MS.gene95523:CDS | 40.0% | |
| TAAGCAGTGAGACAAGAGTT+TGG | + | chr3.4:24383322-24383341 | MS.gene95523:intron | 40.0% | |
| TATGATTTCTGATTCTGCCG+TGG | + | chr3.4:24380893-24380912 | MS.gene95523:intron | 40.0% | |
| TCAGAGGGAAGATTTGGATA+TGG | + | chr3.4:24382741-24382760 | MS.gene95523:CDS | 40.0% | |
| TCAGCTTCTTTAGTTGAGGT+AGG | - | chr3.4:24383767-24383786 | None:intergenic | 40.0% | |
| TCCCAGCTTAATATACTGTC+AGG | - | chr3.4:24379067-24379086 | None:intergenic | 40.0% | |
| TCTAACCTGACTCTTTCAGT+TGG | + | chr3.4:24383701-24383720 | MS.gene95523:CDS | 40.0% | |
| TCTGTAGCATCTCAACAACA+AGG | - | chr3.4:24380128-24380147 | None:intergenic | 40.0% | |
| TCTTGTGGAGTTGAAGCTTA+GGG | - | chr3.4:24378819-24378838 | None:intergenic | 40.0% | |
| TGACTTCGGATGTACACATT+CGG | + | chr3.4:24381971-24381990 | MS.gene95523:intron | 40.0% | |
| TTCTTGTGGAGTTGAAGCTT+AGG | - | chr3.4:24378820-24378839 | None:intergenic | 40.0% | |
| TTGAAGAGGAGAGTTTGATG+GGG | - | chr3.4:24378871-24378890 | None:intergenic | 40.0% | |
| TTTAGAAATGTGGGGGATTG+GGG | + | chr3.4:24382081-24382100 | MS.gene95523:intron | 40.0% | |
| ! | AAGGAAGTGGTTTTTGTTGG+AGG | - | chr3.4:24378918-24378937 | None:intergenic | 40.0% |
| ! | AAGTTTTGCGGCCAAAATCT+AGG | - | chr3.4:24379955-24379974 | None:intergenic | 40.0% |
| ! | ACAAAAGCATGTAAGGAGCT+TGG | + | chr3.4:24380840-24380859 | MS.gene95523:CDS | 40.0% |
| ! | CAGCCTTGTACTAAAACAAG+AGG | - | chr3.4:24382628-24382647 | None:intergenic | 40.0% |
| ! | GGTTGGTGTAGTTGAAAGAT+GGG | - | chr3.4:24378850-24378869 | None:intergenic | 40.0% |
| ! | GTTGCCCTTTTAAACTGTCT+TGG | - | chr3.4:24379612-24379631 | None:intergenic | 40.0% |
| ! | TGAAAAGGCATGTTCATGTG+TGG | + | chr3.4:24380623-24380642 | MS.gene95523:intron | 40.0% |
| ! | TGACTCTACTTCCTTTTCAG+AGG | + | chr3.4:24382191-24382210 | MS.gene95523:intron | 40.0% |
| ! | TTATGCCATGGCCTAGATTT+TGG | + | chr3.4:24379941-24379960 | MS.gene95523:intron | 40.0% |
| ! | TTTTCGTGACTGCTGTATTG+TGG | + | chr3.4:24381609-24381628 | MS.gene95523:intron | 40.0% |
| !! | CTGAAGATTGTATTGGCTTC+TGG | + | chr3.4:24383855-24383874 | MS.gene95523:CDS | 40.0% |
| !! | GTGGTGTCTTTAAGACATGT+TGG | + | chr3.4:24380642-24380661 | MS.gene95523:intron | 40.0% |
| !! | TAGTTTGTTTGGATTGGCGT+CGG | + | chr3.4:24381468-24381487 | MS.gene95523:intron | 40.0% |
| !! | TCTGGAAGTTTTGTCGCAAA+AGG | - | chr3.4:24382362-24382381 | None:intergenic | 40.0% |
| !! | TTACGGTGTTACTAGCTGTT+TGG | + | chr3.4:24379325-24379344 | MS.gene95523:intron | 40.0% |
| !!! | AGATGGGGTTTTGATTCTTG+TGG | - | chr3.4:24378834-24378853 | None:intergenic | 40.0% |
| !!! | GCACACGTGGTTTTAAATAG+TGG | + | chr3.4:24379823-24379842 | MS.gene95523:intron | 40.0% |
| !!! | TTGGATCCCTTTTGAAATCC+AGG | - | chr3.4:24382317-24382336 | None:intergenic | 40.0% |
| AACCACGATTGAGGCTTCAT+CGG | - | chr3.4:24379890-24379909 | None:intergenic | 45.0% | |
| AAGAGCTCTTCCCAGTAAAC+GGG | + | chr3.4:24380866-24380885 | MS.gene95523:CDS | 45.0% | |
| AAGATGCAACAGCCAATCCT+GGG | - | chr3.4:24382821-24382840 | None:intergenic | 45.0% | |
| AGATGACGTATGGTGTCCTA+TGG | - | chr3.4:24380332-24380351 | None:intergenic | 45.0% | |
| AGCTGTGACAGTAAATGGTG+AGG | - | chr3.4:24383633-24383652 | None:intergenic | 45.0% | |
| AGTTGCATTGCAGCTGTTGT+AGG | + | chr3.4:24381438-24381457 | MS.gene95523:intron | 45.0% | |
| ATACTGTCAGGATCAGCTTC+TGG | - | chr3.4:24379055-24379074 | None:intergenic | 45.0% | |
| ATGCACGTTACAAGACCACT+TGG | - | chr3.4:24381026-24381045 | None:intergenic | 45.0% | |
| CACTCTCTCTAACACTCTAG+TGG | - | chr3.4:24383174-24383193 | None:intergenic | 45.0% | |
| GAAGCAGCTAAGAAAGCTTC+TGG | + | chr3.4:24383794-24383813 | MS.gene95523:CDS | 45.0% | |
| GACAGTTTAAAAGGGCAACC+CGG | + | chr3.4:24379613-24379632 | MS.gene95523:intron | 45.0% | |
| GCCACATCACTAATCAACAC+GGG | - | chr3.4:24380397-24380416 | None:intergenic | 45.0% | |
| GCTGTGACAGTAAATGGTGA+GGG | - | chr3.4:24383632-24383651 | None:intergenic | 45.0% | |
| GGAGCTCTGTTCCATTGAAA+CGG | + | chr3.4:24383667-24383686 | MS.gene95523:CDS | 45.0% | |
| GGCCACATCACTAATCAACA+CGG | - | chr3.4:24380398-24380417 | None:intergenic | 45.0% | |
| GTACACTTCCAGAAACGTGT+AGG | + | chr3.4:24382056-24382075 | MS.gene95523:intron | 45.0% | |
| GTCTAATGGCAAAAGAGGCT+TGG | - | chr3.4:24382336-24382355 | None:intergenic | 45.0% | |
| TACTGTCAGGATCAGCTTCT+GGG | - | chr3.4:24379054-24379073 | None:intergenic | 45.0% | |
| TATTATAGCCGTTCGAGAGG+AGG | + | chr3.4:24382710-24382729 | MS.gene95523:intron | 45.0% | |
| TCAAAGACTGTCTGGTAGAC+CGG | + | chr3.4:24381694-24381713 | MS.gene95523:intron | 45.0% | |
| TGGTACTAAGTCCTCACCAT+AGG | + | chr3.4:24380313-24380332 | MS.gene95523:intron | 45.0% | |
| TTGTGGCTGATCACATTACG+AGG | + | chr3.4:24381626-24381645 | MS.gene95523:intron | 45.0% | |
| ! | ACCCCTAAGCTTTTGATCCA+AGG | - | chr3.4:24381055-24381074 | None:intergenic | 45.0% |
| ! | CGGTGCTAACTACAAAGTGT+TGG | + | chr3.4:24381714-24381733 | MS.gene95523:intron | 45.0% |
| !! | AAGCGAATGTTTCTAGGCAC+AGG | - | chr3.4:24379262-24379281 | None:intergenic | 45.0% |
| !! | GGGTTGGTGTAGTTGAAAGA+TGG | - | chr3.4:24378851-24378870 | None:intergenic | 45.0% |
| !! | TCCCGTGTTGATTAGTGATG+TGG | + | chr3.4:24380393-24380412 | MS.gene95523:intron | 45.0% |
| !!! | GTTTTGGCGTTGACATGCTA+TGG | + | chr3.4:24381521-24381540 | MS.gene95523:intron | 45.0% |
| !! | TTTATAAAAAGAAAAAAAAA+AGG | + | chr3.4:24381334-24381353 | MS.gene95523:intron | 5.0% |
| !!! | TAATTATTTTTATATACTTT+GGG | - | chr3.4:24380072-24380091 | None:intergenic | 5.0% |
| AACAGCCAATCCTGGGATCA+AGG | - | chr3.4:24382814-24382833 | None:intergenic | 50.0% | |
| ACCACGATTGAGGCTTCATC+GGG | - | chr3.4:24379889-24379908 | None:intergenic | 50.0% | |
| ACGTATGGTGTCCTATGGTG+AGG | - | chr3.4:24380327-24380346 | None:intergenic | 50.0% | |
| ACTAAAGCTCCCGCATATGC+AGG | + | chr3.4:24379639-24379658 | MS.gene95523:intron | 50.0% | |
| ACTGATTGGCAAGGTGAGCA+TGG | - | chr3.4:24380445-24380464 | None:intergenic | 50.0% | |
| AGAGGAGAGTTTGATGGGGT+TGG | - | chr3.4:24378867-24378886 | None:intergenic | 50.0% | |
| CTAAAGCTCCCGCATATGCA+GGG | + | chr3.4:24379640-24379659 | MS.gene95523:intron | 50.0% | |
| GAAGATGCAACAGCCAATCC+TGG | - | chr3.4:24382822-24382841 | None:intergenic | 50.0% | |
| GCAGCTAAGAAAGCTTCTGG+AGG | + | chr3.4:24383797-24383816 | MS.gene95523:CDS | 50.0% | |
| GTAACGTGCATGCCAAACCT+TGG | + | chr3.4:24381035-24381054 | MS.gene95523:intron | 50.0% | |
| TACTTACTCACTGGCACACG+TGG | + | chr3.4:24379810-24379829 | MS.gene95523:intron | 50.0% | |
| TCAGCCTCAGAGGGAAGATT+TGG | + | chr3.4:24382735-24382754 | MS.gene95523:CDS | 50.0% | |
| ! | GTGTATTTCTGCTGCGTTGC+AGG | + | chr3.4:24380796-24380815 | MS.gene95523:intron | 50.0% |
| !! | AAATCTTCCCTCTGAGGCTG+AGG | - | chr3.4:24382736-24382755 | None:intergenic | 50.0% |
| !! | CTTCCTTTTCAGAGGTGCAC+CGG | + | chr3.4:24382199-24382218 | MS.gene95523:intron | 50.0% |
| CATATGCAGGGTTCGGGAAG+GGG | + | chr3.4:24379652-24379671 | MS.gene95523:intron | 55.0% | |
| CTGCAACGCAACCACGATTG+AGG | - | chr3.4:24379899-24379918 | None:intergenic | 55.0% | |
| CTTCCCGAACCCTGCATATG+CGG | - | chr3.4:24379652-24379671 | None:intergenic | 55.0% | |
| GAAATGTGGGGGATTGGGGA+AGG | + | chr3.4:24382085-24382104 | MS.gene95523:intron | 55.0% | |
| GCATATGCAGGGTTCGGGAA+GGG | + | chr3.4:24379651-24379670 | MS.gene95523:intron | 55.0% | |
| GCGTGCAGTGTCCGTTTCAA+TGG | - | chr3.4:24383681-24383700 | None:intergenic | 55.0% | |
| TGCGGCCAAAATCTAGGCCA+TGG | - | chr3.4:24379949-24379968 | None:intergenic | 55.0% | |
| TTCCCGAACCCTGCATATGC+GGG | - | chr3.4:24379651-24379670 | None:intergenic | 55.0% | |
| ! | ACACCGGTGCACCTCTGAAA+AGG | - | chr3.4:24382205-24382224 | None:intergenic | 55.0% |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | - | chr3.4:24379635-24379654 | None:intergenic | 55.0% |
| CGCATATGCAGGGTTCGGGA+AGG | + | chr3.4:24379650-24379669 | MS.gene95523:intron | 60.0% | |
| CTCCCGCATATGCAGGGTTC+GGG | + | chr3.4:24379646-24379665 | MS.gene95523:intron | 60.0% | |
| GCCCGATGAAGCCTCAATCG+TGG | + | chr3.4:24379885-24379904 | MS.gene95523:intron | 60.0% | |
| GCTCCCGCATATGCAGGGTT+CGG | + | chr3.4:24379645-24379664 | MS.gene95523:intron | 60.0% | |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | - | chr3.4:24379634-24379653 | None:intergenic | 60.0% |
| AGAGGAGGCCTCAGCCTCAG+AGG | + | chr3.4:24382725-24382744 | MS.gene95523:CDS | 65.0% | |
| GAGGAGGCCTCAGCCTCAGA+GGG | + | chr3.4:24382726-24382745 | MS.gene95523:CDS | 65.0% | |
| GGCTGAGGCCTCCTCTCGAA+CGG | - | chr3.4:24382721-24382740 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 24378809 | 24383910 | 24378809 | ID=MS.gene95523 |
| chr3.4 | mRNA | 24378809 | 24383910 | 24378809 | ID=MS.gene95523.t1;Parent=MS.gene95523 |
| chr3.4 | exon | 24378809 | 24379287 | 24378809 | ID=MS.gene95523.t1.exon1;Parent=MS.gene95523.t1 |
| chr3.4 | CDS | 24378809 | 24379287 | 24378809 | ID=cds.MS.gene95523.t1;Parent=MS.gene95523.t1 |
| chr3.4 | exon | 24380818 | 24380887 | 24380818 | ID=MS.gene95523.t1.exon2;Parent=MS.gene95523.t1 |
| chr3.4 | CDS | 24380818 | 24380887 | 24380818 | ID=cds.MS.gene95523.t1;Parent=MS.gene95523.t1 |
| chr3.4 | exon | 24382257 | 24382428 | 24382257 | ID=MS.gene95523.t1.exon3;Parent=MS.gene95523.t1 |
| chr3.4 | CDS | 24382257 | 24382428 | 24382257 | ID=cds.MS.gene95523.t1;Parent=MS.gene95523.t1 |
| chr3.4 | exon | 24382718 | 24382861 | 24382718 | ID=MS.gene95523.t1.exon4;Parent=MS.gene95523.t1 |
| chr3.4 | CDS | 24382718 | 24382861 | 24382718 | ID=cds.MS.gene95523.t1;Parent=MS.gene95523.t1 |
| chr3.4 | exon | 24383651 | 24383910 | 24383651 | ID=MS.gene95523.t1.exon5;Parent=MS.gene95523.t1 |
| chr3.4 | CDS | 24383651 | 24383910 | 24383651 | ID=cds.MS.gene95523.t1;Parent=MS.gene95523.t1 |
| Gene Sequence |
| Protein sequence |
