Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0761890 | G7JWE3 | 95.954 | 173 | 7 | 0 | 1 | 173 | 1 | 173 | 7.75e-109 | 317 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003220 | Msa0761890 | 0.810048 | 1.399071e-50 | -8.615850e-47 |
| Msa0027390 | Msa0761890 | 0.802225 | 6.206170e-49 | -8.615850e-47 |
| Msa0031180 | Msa0761890 | 0.800083 | 1.702345e-48 | -8.615850e-47 |
| Msa0038020 | Msa0761890 | 0.810729 | 9.971725e-51 | -8.615850e-47 |
| Msa0043730 | Msa0761890 | 0.835252 | 1.869975e-56 | -8.615850e-47 |
| Msa0048000 | Msa0761890 | 0.805255 | 1.457814e-49 | -8.615850e-47 |
| Msa0055660 | Msa0761890 | 0.803736 | 3.022886e-49 | -8.615850e-47 |
| Msa0068430 | Msa0761890 | 0.829244 | 5.737478e-55 | -8.615850e-47 |
| Msa0072170 | Msa0761890 | 0.810174 | 1.314316e-50 | -8.615850e-47 |
| Msa0077450 | Msa0761890 | 0.819105 | 1.383080e-52 | -8.615850e-47 |
| Msa0085370 | Msa0761890 | 0.802879 | 4.550329e-49 | -8.615850e-47 |
| Msa0085720 | Msa0761890 | 0.839057 | 1.989438e-57 | -8.615850e-47 |
| Msa0090030 | Msa0761890 | 0.816699 | 4.832755e-52 | -8.615850e-47 |
| Msa0092440 | Msa0761890 | 0.825811 | 3.825013e-54 | -8.615850e-47 |
| Msa0096580 | Msa0761890 | 0.810746 | 9.890744e-51 | -8.615850e-47 |
| Msa0119320 | Msa0761890 | 0.810686 | 1.018663e-50 | -8.615850e-47 |
| Msa0120540 | Msa0761890 | 0.805679 | 1.188404e-49 | -8.615850e-47 |
| Msa0610670 | Msa0761890 | 0.807520 | 4.856126e-50 | -8.615850e-47 |
| Msa0621650 | Msa0761890 | 0.842956 | 1.883428e-58 | -8.615850e-47 |
| Msa0626220 | Msa0761890 | 0.812441 | 4.233968e-51 | -8.615850e-47 |
| Msa0628290 | Msa0761890 | 0.830221 | 3.318209e-55 | -8.615850e-47 |
| Msa0628740 | Msa0761890 | 0.812566 | 3.974558e-51 | -8.615850e-47 |
| Msa0630950 | Msa0761890 | 0.809052 | 2.289345e-50 | -8.615850e-47 |
| Msa0651270 | Msa0761890 | 0.823078 | 1.680527e-53 | -8.615850e-47 |
| Msa0653320 | Msa0761890 | -0.823324 | 1.472520e-53 | -8.615850e-47 |
| Msa0666140 | Msa0761890 | 0.812004 | 5.271307e-51 | -8.615850e-47 |
| Msa0679550 | Msa0761890 | 0.808297 | 3.318921e-50 | -8.615850e-47 |
| Msa0686080 | Msa0761890 | 0.802512 | 5.415965e-49 | -8.615850e-47 |
| Msa0689420 | Msa0761890 | 0.814069 | 1.858627e-51 | -8.615850e-47 |
| Msa0693310 | Msa0761890 | 0.803261 | 3.792381e-49 | -8.615850e-47 |
| Msa0700230 | Msa0761890 | 0.800960 | 1.127531e-48 | -8.615850e-47 |
| Msa0715110 | Msa0761890 | 0.811454 | 6.944360e-51 | -8.615850e-47 |
| Msa0715150 | Msa0761890 | 0.806297 | 8.807783e-50 | -8.615850e-47 |
| Msa0716860 | Msa0761890 | 0.806854 | 6.720600e-50 | -8.615850e-47 |
| Msa0716970 | Msa0761890 | 0.806921 | 6.505567e-50 | -8.615850e-47 |
| Msa0721410 | Msa0761890 | 0.861466 | 1.006001e-63 | -8.615850e-47 |
| Msa0724560 | Msa0761890 | 0.808626 | 2.823907e-50 | -8.615850e-47 |
| Msa0741160 | Msa0761890 | 0.808528 | 2.963660e-50 | -8.615850e-47 |
| Msa0751210 | Msa0761890 | 0.817413 | 3.339908e-52 | -8.615850e-47 |
| Msa0757050 | Msa0761890 | 0.822622 | 2.146394e-53 | -8.615850e-47 |
| Msa0761890 | Msa0780280 | 0.813818 | 2.111787e-51 | -8.615850e-47 |
| Msa0761890 | Msa0794320 | 0.805141 | 1.540390e-49 | -8.615850e-47 |
| Msa0761890 | Msa0803590 | 0.874762 | 5.241290e-68 | -8.615850e-47 |
| Msa0761890 | Msa0816340 | 0.814339 | 1.619861e-51 | -8.615850e-47 |
| Msa0761890 | Msa0821800 | 0.815854 | 7.467657e-52 | -8.615850e-47 |
| Msa0761890 | Msa0829190 | 0.853768 | 1.921132e-61 | -8.615850e-47 |
| Msa0761890 | Msa0831150 | 0.808108 | 3.641265e-50 | -8.615850e-47 |
| Msa0761890 | Msa0848900 | 0.804454 | 2.143262e-49 | -8.615850e-47 |
| Msa0761890 | Msa0861830 | 0.833386 | 5.493226e-56 | -8.615850e-47 |
| Msa0761890 | Msa0891600 | -0.842373 | 2.690483e-58 | -8.615850e-47 |
| Msa0761890 | Msa0908170 | 0.831609 | 1.514984e-55 | -8.615850e-47 |
| Msa0761890 | Msa0930140 | 0.804569 | 2.028499e-49 | -8.615850e-47 |
| Msa0761890 | Msa0944730 | 0.820887 | 5.408506e-53 | -8.615850e-47 |
| Msa0761890 | Msa0957970 | 0.806423 | 8.285918e-50 | -8.615850e-47 |
| Msa0761890 | Msa0959010 | 0.832773 | 7.806442e-56 | -8.615850e-47 |
| Msa0761890 | Msa0960160 | 0.807374 | 5.213804e-50 | -8.615850e-47 |
| Msa0761890 | Msa0967370 | 0.800060 | 1.720506e-48 | -8.615850e-47 |
| Msa0761890 | Msa0981310 | 0.825673 | 4.122883e-54 | -8.615850e-47 |
| Msa0761890 | Msa0982240 | 0.810705 | 1.009126e-50 | -8.615850e-47 |
| Msa0761890 | Msa0993530 | 0.820809 | 5.636884e-53 | -8.615850e-47 |
| Msa0761890 | Msa1021510 | 0.827011 | 1.979995e-54 | -8.615850e-47 |
| Msa0761890 | Msa1036740 | 0.800506 | 1.396074e-48 | -8.615850e-47 |
| Msa0761890 | Msa1056460 | 0.826166 | 3.149499e-54 | -8.615850e-47 |
| Msa0761890 | Msa1072700 | 0.805791 | 1.125700e-49 | -8.615850e-47 |
| Msa0761890 | Msa1087470 | 0.800255 | 1.570183e-48 | -8.615850e-47 |
| Msa0761890 | Msa1096550 | 0.806783 | 6.955281e-50 | -8.615850e-47 |
| Msa0761890 | Msa1105500 | 0.823197 | 1.576767e-53 | -8.615850e-47 |
| Msa0761890 | Msa1113590 | 0.801443 | 8.984515e-49 | -8.615850e-47 |
| Msa0761890 | Msa1127770 | 0.801952 | 7.062669e-49 | -8.615850e-47 |
| Msa0761890 | Msa1130530 | 0.809278 | 2.047508e-50 | -8.615850e-47 |
| Msa0761890 | Msa1133570 | 0.814343 | 1.617171e-51 | -8.615850e-47 |
| Msa0761890 | Msa1152950 | 0.836103 | 1.138339e-56 | -8.615850e-47 |
| Msa0761890 | Msa1174310 | 0.847130 | 1.404719e-59 | -8.615850e-47 |
| Msa0761890 | Msa1174850 | 0.810843 | 9.424238e-51 | -8.615850e-47 |
| Msa0761890 | Msa1205480 | 0.804749 | 1.860308e-49 | -8.615850e-47 |
| Msa0761890 | Msa1211340 | 0.818551 | 1.848121e-52 | -8.615850e-47 |
| Msa0761890 | Msa1235400 | 0.823823 | 1.125533e-53 | -8.615850e-47 |
| Msa0761890 | Msa1259640 | 0.825124 | 5.561457e-54 | -8.615850e-47 |
| Msa0761890 | Msa1280620 | 0.807559 | 4.764909e-50 | -8.615850e-47 |
| Msa0761890 | Msa1296300 | 0.802757 | 4.821361e-49 | -8.615850e-47 |
| Msa0761890 | Msa1314770 | 0.837390 | 5.345833e-57 | -8.615850e-47 |
| Msa0761890 | Msa1329790 | 0.815000 | 1.156539e-51 | -8.615850e-47 |
| Msa0761890 | Msa1333420 | 0.802713 | 4.924153e-49 | -8.615850e-47 |
| Msa0761890 | Msa1335710 | 0.823046 | 1.710138e-53 | -8.615850e-47 |
| Msa0761890 | Msa1338250 | 0.834946 | 2.233420e-56 | -8.615850e-47 |
| Msa0761890 | Msa1340830 | 0.815277 | 1.003747e-51 | -8.615850e-47 |
| Msa0761890 | Msa1341490 | 0.800489 | 1.406841e-48 | -8.615850e-47 |
| Msa0761890 | Msa1348470 | -0.804117 | 2.519831e-49 | -8.615850e-47 |
| Msa0761890 | Msa1350690 | 0.805327 | 1.408411e-49 | -8.615850e-47 |
| Msa0761890 | Msa1363700 | 0.814830 | 1.261450e-51 | -8.615850e-47 |
| Msa0761890 | Msa1366300 | 0.828939 | 6.801501e-55 | -8.615850e-47 |
| Msa0761890 | Msa1372290 | 0.816915 | 4.323902e-52 | -8.615850e-47 |
| Msa0761890 | Msa1373350 | 0.805150 | 1.534096e-49 | -8.615850e-47 |
| Msa0761890 | Msa1376130 | 0.800367 | 1.489812e-48 | -8.615850e-47 |
| Msa0761890 | Msa1393800 | 0.807300 | 5.407974e-50 | -8.615850e-47 |
| Msa0761890 | Msa1396940 | 0.841663 | 4.146188e-58 | -8.615850e-47 |
| Msa0761890 | Msa1398860 | 0.824805 | 6.613160e-54 | -8.615850e-47 |
| Msa0761890 | Msa1400070 | 0.803476 | 3.423774e-49 | -8.615850e-47 |
| Msa0761890 | Msa1402270 | 0.823677 | 1.217647e-53 | -8.615850e-47 |
| Msa0761890 | Msa1422840 | 0.815636 | 8.352270e-52 | -8.615850e-47 |
| Msa0761890 | Msa1426570 | 0.823698 | 1.203839e-53 | -8.615850e-47 |
| Msa0761890 | Msa1431060 | 0.808176 | 3.521812e-50 | -8.615850e-47 |
| Msa0761890 | Msa1433220 | 0.839484 | 1.541806e-57 | -8.615850e-47 |
| Msa0761890 | Msa1435400 | 0.828322 | 9.588654e-55 | -8.615850e-47 |
| Msa0761890 | Msa1445220 | 0.804315 | 2.291960e-49 | -8.615850e-47 |
| Msa0761890 | Msa1447150 | 0.813222 | 2.855382e-51 | -8.615850e-47 |
| Msa0761890 | Msa1452470 | 0.810423 | 1.161189e-50 | -8.615850e-47 |
| Msa0124550 | Msa0761890 | 0.810965 | 8.867398e-51 | -8.615850e-47 |
| Msa0144790 | Msa0761890 | 0.801479 | 8.829725e-49 | -8.615850e-47 |
| Msa0165300 | Msa0761890 | 0.813595 | 2.364458e-51 | -8.615850e-47 |
| Msa0170140 | Msa0761890 | 0.802107 | 6.564186e-49 | -8.615850e-47 |
| Msa0175050 | Msa0761890 | 0.812732 | 3.655984e-51 | -8.615850e-47 |
| Msa0182570 | Msa0761890 | 0.804153 | 2.476118e-49 | -8.615850e-47 |
| Msa0187060 | Msa0761890 | 0.814583 | 1.430704e-51 | -8.615850e-47 |
| Msa0198940 | Msa0761890 | 0.803507 | 3.372699e-49 | -8.615850e-47 |
| Msa0200560 | Msa0761890 | 0.800508 | 1.394424e-48 | -8.615850e-47 |
| Msa0210250 | Msa0761890 | 0.812459 | 4.195977e-51 | -8.615850e-47 |
| Msa0212750 | Msa0761890 | -0.805122 | 1.554718e-49 | -8.615850e-47 |
| Msa0227230 | Msa0761890 | 0.803375 | 3.592404e-49 | -8.615850e-47 |
| Msa0232340 | Msa0761890 | 0.809540 | 1.798906e-50 | -8.615850e-47 |
| Msa0233610 | Msa0761890 | 0.808986 | 2.364976e-50 | -8.615850e-47 |
| Msa0377530 | Msa0761890 | 0.828467 | 8.847201e-55 | -8.615850e-47 |
| Msa0381000 | Msa0761890 | 0.810106 | 1.359433e-50 | -8.615850e-47 |
| Msa0381080 | Msa0761890 | 0.810338 | 1.211679e-50 | -8.615850e-47 |
| Msa0388030 | Msa0761890 | -0.806990 | 6.289878e-50 | -8.615850e-47 |
| Msa0390960 | Msa0761890 | 0.821851 | 3.241381e-53 | -8.615850e-47 |
| Msa0404700 | Msa0761890 | 0.806221 | 9.139969e-50 | -8.615850e-47 |
| Msa0417650 | Msa0761890 | 0.851879 | 6.654651e-61 | -8.615850e-47 |
| Msa0417730 | Msa0761890 | 0.839349 | 1.671195e-57 | -8.615850e-47 |
| Msa0419640 | Msa0761890 | -0.800790 | 1.221385e-48 | -8.615850e-47 |
| Msa0426810 | Msa0761890 | 0.828187 | 1.033353e-54 | -8.615850e-47 |
| Msa0430950 | Msa0761890 | 0.801571 | 8.456255e-49 | -8.615850e-47 |
| Msa0432480 | Msa0761890 | 0.846478 | 2.118426e-59 | -8.615850e-47 |
| Msa0461590 | Msa0761890 | 0.800626 | 1.319631e-48 | -8.615850e-47 |
| Msa0464900 | Msa0761890 | 0.843973 | 1.008039e-58 | -8.615850e-47 |
| Msa0476880 | Msa0761890 | 0.814006 | 1.918686e-51 | -8.615850e-47 |
| Msa0239940 | Msa0761890 | 0.820550 | 6.466298e-53 | -8.615850e-47 |
| Msa0241740 | Msa0761890 | 0.846500 | 2.088465e-59 | -8.615850e-47 |
| Msa0244380 | Msa0761890 | 0.807063 | 6.069941e-50 | -8.615850e-47 |
| Msa0250670 | Msa0761890 | 0.825157 | 5.463234e-54 | -8.615850e-47 |
| Msa0251770 | Msa0761890 | 0.822392 | 2.427798e-53 | -8.615850e-47 |
| Msa0266210 | Msa0761890 | 0.803162 | 3.976401e-49 | -8.615850e-47 |
| Msa0269520 | Msa0761890 | 0.825085 | 5.680853e-54 | -8.615850e-47 |
| Msa0271580 | Msa0761890 | 0.800041 | 1.735582e-48 | -8.615850e-47 |
| Msa0282890 | Msa0761890 | 0.819254 | 1.279424e-52 | -8.615850e-47 |
| Msa0287670 | Msa0761890 | 0.804375 | 2.226961e-49 | -8.615850e-47 |
| Msa0289400 | Msa0761890 | 0.853843 | 1.827286e-61 | -8.615850e-47 |
| Msa0299580 | Msa0761890 | 0.806408 | 8.348093e-50 | -8.615850e-47 |
| Msa0304840 | Msa0761890 | 0.840714 | 7.361532e-58 | -8.615850e-47 |
| Msa0307470 | Msa0761890 | 0.801435 | 9.017308e-49 | -8.615850e-47 |
| Msa0308200 | Msa0761890 | 0.807812 | 4.209463e-50 | -8.615850e-47 |
| Msa0308220 | Msa0761890 | 0.817107 | 3.913714e-52 | -8.615850e-47 |
| Msa0310430 | Msa0761890 | 0.817180 | 3.768482e-52 | -8.615850e-47 |
| Msa0320610 | Msa0761890 | 0.804084 | 2.559670e-49 | -8.615850e-47 |
| Msa0321170 | Msa0761890 | 0.833255 | 5.923314e-56 | -8.615850e-47 |
| Msa0321190 | Msa0761890 | 0.826975 | 2.019931e-54 | -8.615850e-47 |
| Msa0327410 | Msa0761890 | 0.830372 | 3.047112e-55 | -8.615850e-47 |
| Msa0341230 | Msa0761890 | 0.831235 | 1.872429e-55 | -8.615850e-47 |
| Msa0489610 | Msa0761890 | 0.815127 | 1.083734e-51 | -8.615850e-47 |
| Msa0517490 | Msa0761890 | 0.827737 | 1.325980e-54 | -8.615850e-47 |
| Msa0534410 | Msa0761890 | 0.805286 | 1.436172e-49 | -8.615850e-47 |
| Msa0537770 | Msa0761890 | 0.824936 | 6.161174e-54 | -8.615850e-47 |
| Msa0557950 | Msa0761890 | -0.812765 | 3.596599e-51 | -8.615850e-47 |
| Msa0573040 | Msa0761890 | 0.816791 | 4.608665e-52 | -8.615850e-47 |
| Msa0579100 | Msa0761890 | 0.812126 | 4.959297e-51 | -8.615850e-47 |
| Msa0579130 | Msa0761890 | 0.805355 | 1.389662e-49 | -8.615850e-47 |
| Msa0579200 | Msa0761890 | 0.803846 | 2.868578e-49 | -8.615850e-47 |
| Msa0580640 | Msa0761890 | 0.806861 | 6.695924e-50 | -8.615850e-47 |
| Msa0587190 | Msa0761890 | 0.804717 | 1.888945e-49 | -8.615850e-47 |
| Msa0588240 | Msa0761890 | 0.812022 | 5.224299e-51 | -8.615850e-47 |
| Msa0590650 | Msa0761890 | 0.803661 | 3.133611e-49 | -8.615850e-47 |
| Msa0591540 | Msa0761890 | 0.811099 | 8.294740e-51 | -8.615850e-47 |
| Msa0594200 | Msa0761890 | 0.801822 | 7.509586e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0761890 | MtrunA17_Chr5g0412221 | 95.954 | 173 | 7 | 0 | 1 | 173 | 1 | 173 | 1.49e-112 | 317 |
| Msa0761890 | MtrunA17_Chr8g0367531 | 59.322 | 177 | 63 | 6 | 3 | 173 | 1 | 174 | 7.75e-49 | 155 |
| Msa0761890 | MtrunA17_Chr5g0427491 | 50.562 | 178 | 70 | 9 | 1 | 169 | 1 | 169 | 7.30e-46 | 148 |
| Msa0761890 | MtrunA17_Chr3g0132871 | 39.548 | 177 | 93 | 6 | 1 | 169 | 1 | 171 | 1.22e-26 | 99.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0761890 | AT4G38060.3 | 44.118 | 136 | 57 | 4 | 36 | 171 | 20 | 136 | 2.77e-25 | 95.1 |
| Msa0761890 | AT4G38060.2 | 44.118 | 136 | 57 | 4 | 36 | 171 | 20 | 136 | 2.77e-25 | 95.1 |
| Msa0761890 | AT4G38060.4 | 44.118 | 136 | 57 | 4 | 36 | 171 | 20 | 136 | 2.77e-25 | 95.1 |
| Msa0761890 | AT4G38060.1 | 40.323 | 124 | 55 | 4 | 36 | 159 | 20 | 124 | 6.23e-17 | 73.2 |
| Msa0761890 | AT5G65480.1 | 42.222 | 90 | 33 | 5 | 83 | 168 | 76 | 150 | 1.02e-11 | 60.1 |
Find 98 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCTTCAATTTGCTTAAT+TGG | 0.076268 | 5_2:+19633133 | Msa0761890:five_prime_UTR |
| TTAATTGGGTTTGATATTTA+AGG | 0.124236 | 5_2:+19633148 | Msa0761890:five_prime_UTR |
| TCAATTTGCAATGCAAAATT+TGG | 0.174380 | 5_2:+19635532 | Msa0761890:three_prime_UTR |
| CTTAGCTTTAGGGTCAAAAT+TGG | 0.205002 | 5_2:-19632857 | None:intergenic |
| ATCTTCATCTTGTATGATTA+AGG | 0.214291 | 5_2:+19635402 | Msa0761890:three_prime_UTR |
| TTTGAATCATAATGAGATAT+TGG | 0.219187 | 5_2:+19632943 | Msa0761890:five_prime_UTR |
| GAGTAAAGACCTTAGCTTTA+GGG | 0.230350 | 5_2:-19632867 | None:intergenic |
| TTCCGTGTAATTCGCGAGTT+AGG | 0.239847 | 5_2:+19632654 | Msa0761890:five_prime_UTR |
| ATTACATTAGATGCATAATA+TGG | 0.242288 | 5_2:-19635468 | None:intergenic |
| ATTATTGGGGATTAATTTCT+TGG | 0.242680 | 5_2:+19633033 | Msa0761890:five_prime_UTR |
| GGTGGTGGTGGTTGTTTATC+AGG | 0.245257 | 5_2:+19633764 | Msa0761890:CDS |
| GATGATTCTGATTGGTCTAT+TGG | 0.261069 | 5_2:+19633797 | Msa0761890:CDS |
| CAATTCTTTCTCAAGTTCCT+TGG | 0.266048 | 5_2:+19633363 | Msa0761890:five_prime_UTR |
| CCAATTCATAAAAGCCAAAA+AGG | 0.288566 | 5_2:-19633254 | None:intergenic |
| CTTTGACACGTTTGTCTTGT+TGG | 0.293279 | 5_2:+19633537 | Msa0761890:CDS |
| CGCTACCGGAAACAAAATTA+AGG | 0.293734 | 5_2:-19632763 | None:intergenic |
| GAGAAAGAGCCTATTGTTAA+TGG | 0.294492 | 5_2:+19633578 | Msa0761890:CDS |
| TAGCAAAATTGCAAAGCTTA+AGG | 0.310663 | 5_2:-19633484 | None:intergenic |
| TATCTCATTATGATTCAAAA+TGG | 0.313629 | 5_2:-19632939 | None:intergenic |
| TTGCTTCCTCTACTTCTAAA+AGG | 0.316170 | 5_2:-19635438 | None:intergenic |
| TTGAATCATAATGAGATATT+GGG | 0.321523 | 5_2:+19632944 | Msa0761890:five_prime_UTR |
| TGAGTAAAGACCTTAGCTTT+AGG | 0.328629 | 5_2:-19632868 | None:intergenic |
| AAGACGAGTTTCATAGTAAC+TGG | 0.339283 | 5_2:+19632622 | Msa0761890:five_prime_UTR |
| ATGATTCTGATTGGTCTATT+GGG | 0.339315 | 5_2:+19633798 | Msa0761890:CDS |
| CTATGAGTGATGAAGCATTT+AGG | 0.346632 | 5_2:-19633452 | None:intergenic |
| TTTCTTCAATTTGCTTAATT+GGG | 0.348196 | 5_2:+19633134 | Msa0761890:five_prime_UTR |
| CTAGGTTTCTTCTTGTTCAC+TGG | 0.354455 | 5_2:+19632901 | Msa0761890:five_prime_UTR |
| AATTCTTTCTCAAGTTCCTT+GGG | 0.356156 | 5_2:+19633364 | Msa0761890:five_prime_UTR |
| TAGAAGAAAAGTTGTAACTA+TGG | 0.360829 | 5_2:+19633508 | Msa0761890:exon |
| TTGGTTATGGAGAGGTAGTA+AGG | 0.362202 | 5_2:+19633556 | Msa0761890:CDS |
| GATGAATTTCCATTAACAAT+AGG | 0.365544 | 5_2:-19633587 | None:intergenic |
| AGCAAAATTGCAAAGCTTAA+GGG | 0.366535 | 5_2:-19633483 | None:intergenic |
| CACGTTTGTCTTGTTGGTTA+TGG | 0.369107 | 5_2:+19633543 | Msa0761890:CDS |
| TCTTCTACACATTGTGTTAC+CGG | 0.373001 | 5_2:+19632701 | Msa0761890:five_prime_UTR |
| TCCGTGTAATTCGCGAGTTA+GGG | 0.387182 | 5_2:+19632655 | Msa0761890:five_prime_UTR |
| CAAATAATCAAAGGAAGGTT+AGG | 0.395486 | 5_2:+19633672 | Msa0761890:CDS |
| ATTGAAGAAATTAATTTGAC+TGG | 0.399236 | 5_2:-19633121 | None:intergenic |
| TTACCAGAAGAAAATTCATT+TGG | 0.409882 | 5_2:-19633974 | None:intergenic |
| TTAGGAAGAAGTGGCAGAGT+AGG | 0.411049 | 5_2:+19633690 | Msa0761890:CDS |
| TGGAGCTAGAACATACTATA+TGG | 0.419313 | 5_2:+19635552 | Msa0761890:three_prime_UTR |
| ATGGAAATTCATCTTCTGAA+TGG | 0.426823 | 5_2:+19633597 | Msa0761890:CDS |
| CTGAATCTGATGATTCTGAT+TGG | 0.434314 | 5_2:+19633789 | Msa0761890:CDS |
| TTTGAAGTTTCCTTTGATGA+AGG | 0.436540 | 5_2:+19633646 | Msa0761890:CDS |
| TAGGAAGAAGTGGCAGAGTA+GGG | 0.441023 | 5_2:+19633691 | Msa0761890:CDS |
| CAGTTGTGTGCAGAGATATC+TGG | 0.441188 | 5_2:+19633404 | Msa0761890:five_prime_UTR |
| AAGATGAAGATGCGTGTGTT+TGG | 0.448789 | 5_2:-19635390 | None:intergenic |
| CCTTCAACTTCCTTGCAACC+TGG | 0.459031 | 5_2:-19633911 | None:intergenic |
| AGTGGCAGAGTAGGGAAGAG+AGG | 0.465355 | 5_2:+19633699 | Msa0761890:CDS |
| CTTCTAAAAGGTAGTCAGAA+AGG | 0.471157 | 5_2:-19635426 | None:intergenic |
| TTTACTCAGAAGTATTTACT+AGG | 0.473743 | 5_2:+19632883 | Msa0761890:five_prime_UTR |
| TCCGGCGATAATAAATAAAC+CGG | 0.476910 | 5_2:-19632720 | None:intergenic |
| TCTCAAGTTCCTTGGGTGAG+TGG | 0.495210 | 5_2:+19633371 | Msa0761890:five_prime_UTR |
| CTTCTTCTACATTTATAGAG+TGG | 0.509868 | 5_2:-19632602 | None:intergenic |
| TCAACTTCAATATTCTACTT+CGG | 0.510933 | 5_2:+19635641 | Msa0761890:three_prime_UTR |
| CCAGGTTGCAAGGAAGTTGA+AGG | 0.512670 | 5_2:+19633911 | Msa0761890:CDS |
| AACTCTGATTTCCACTGCGC+CGG | 0.513972 | 5_2:+19635317 | Msa0761890:three_prime_UTR |
| CGATGGTCGTGGACGGTGGA+AGG | 0.519400 | 5_2:+19635352 | Msa0761890:three_prime_UTR |
| GTATCATCTGATGGTGGTGG+TGG | 0.523059 | 5_2:+19633752 | Msa0761890:CDS |
| TTGGTTCCTTGTTATAGACC+AGG | 0.523146 | 5_2:+19633893 | Msa0761890:CDS |
| TTGAAGTTTCCTTTGATGAA+GGG | 0.523219 | 5_2:+19633647 | Msa0761890:CDS |
| ATTGGGGATTAATTTCTTGG+AGG | 0.524342 | 5_2:+19633036 | Msa0761890:five_prime_UTR |
| ACCGGTTTATTTATTATCGC+CGG | 0.526188 | 5_2:+19632719 | Msa0761890:five_prime_UTR |
| TGAAGTTTCCTTTGATGAAG+GGG | 0.531925 | 5_2:+19633648 | Msa0761890:CDS |
| TGCAGCTGGAAACAATTACA+TGG | 0.536763 | 5_2:+19635232 | Msa0761890:intron |
| GATCGGAGCGAGAATTTCTC+CGG | 0.545220 | 5_2:-19632738 | None:intergenic |
| ACCCTAACTCGCGAATTACA+CGG | 0.550476 | 5_2:-19632656 | None:intergenic |
| ATTGGGTGGTTAGAGCCTCA+TGG | 0.551380 | 5_2:+19633815 | Msa0761890:CDS |
| AATCCGATCATTTACGCTAC+CGG | 0.553523 | 5_2:-19632777 | None:intergenic |
| GAAACAAAATTAAGGAAGAT+CGG | 0.560046 | 5_2:-19632755 | None:intergenic |
| TTTCCGGTAGCGTAAATGAT+CGG | 0.567997 | 5_2:+19632774 | Msa0761890:five_prime_UTR |
| AAAGGAAGGTTAGGAAGAAG+TGG | 0.568851 | 5_2:+19633681 | Msa0761890:CDS |
| TTAGTATCATCTGATGGTGG+TGG | 0.573261 | 5_2:+19633749 | Msa0761890:CDS |
| TGATCGATGGTCGTGGACGG+TGG | 0.573888 | 5_2:+19635348 | Msa0761890:three_prime_UTR |
| TTGTTATAGACCAGGTTGCA+AGG | 0.574059 | 5_2:+19633901 | Msa0761890:CDS |
| TTATTTGTCCCCTTCATCAA+AGG | 0.574880 | 5_2:-19633656 | None:intergenic |
| TGATGCAATAAATTGATCAA+AGG | 0.579494 | 5_2:-19633180 | None:intergenic |
| ATTCTGATTGGTCTATTGGG+TGG | 0.590848 | 5_2:+19633801 | Msa0761890:CDS |
| ACCATCGATCAAACTCTAGC+CGG | 0.591368 | 5_2:-19635336 | None:intergenic |
| ACACACACTCAAAGAATCAT+CGG | 0.591756 | 5_2:-19632826 | None:intergenic |
| GAAACAATTACATGGAACAA+TGG | 0.593678 | 5_2:+19635240 | Msa0761890:CDS |
| GTTTGATCGATGGTCGTGGA+CGG | 0.594622 | 5_2:+19635345 | Msa0761890:three_prime_UTR |
| ATGAAGCATTTAGGAAGCCA+AGG | 0.598362 | 5_2:-19633443 | None:intergenic |
| TGAAGGGGACAAATAATCAA+AGG | 0.609615 | 5_2:+19633663 | Msa0761890:CDS |
| TTGTCTTGTTGGTTATGGAG+AGG | 0.611884 | 5_2:+19633548 | Msa0761890:CDS |
| GGGGACAAATAATCAAAGGA+AGG | 0.612072 | 5_2:+19633667 | Msa0761890:CDS |
| TAGAGTTTGATCGATGGTCG+TGG | 0.612486 | 5_2:+19635341 | Msa0761890:three_prime_UTR |
| GATGATTCTTTGAGTGTGTG+TGG | 0.613288 | 5_2:+19632828 | Msa0761890:five_prime_UTR |
| AGACGAGTTTCATAGTAACT+GGG | 0.613473 | 5_2:+19632623 | Msa0761890:five_prime_UTR |
| ATCAGAGTTTACAAACACAC+TGG | 0.616161 | 5_2:-19635303 | None:intergenic |
| GACGAGTTTCATAGTAACTG+GGG | 0.647502 | 5_2:+19632624 | Msa0761890:five_prime_UTR |
| TCAAACTCTAGCCGGCGCAG+TGG | 0.648271 | 5_2:-19635328 | None:intergenic |
| AATAAATTGATCAAAGGACA+AGG | 0.657144 | 5_2:-19633174 | None:intergenic |
| ACGAGTTTCATAGTAACTGG+GGG | 0.660322 | 5_2:+19632625 | Msa0761890:five_prime_UTR |
| GGAGACTAACCACTCACCCA+AGG | 0.660610 | 5_2:-19633380 | None:intergenic |
| GCCGGCTAGAGTTTGATCGA+TGG | 0.667733 | 5_2:+19635335 | Msa0761890:three_prime_UTR |
| TTGCAACCTGGTCTATAACA+AGG | 0.667827 | 5_2:-19633899 | None:intergenic |
| GATATCTCTGCACACAACTG+CGG | 0.688691 | 5_2:-19633401 | None:intergenic |
| CTCTGAAAATCAGAACCATG+AGG | 0.713992 | 5_2:-19633830 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGGATAATTTTTATTATTAT+TGG | + | chr5_2:19633018-19633037 | Msa0761890:five_prime_UTR | 10.0% |
| !!! | GGATAATTTTTATTATTATT+GGG | + | chr5_2:19633019-19633038 | Msa0761890:five_prime_UTR | 10.0% |
| !!! | GATAATTTTTATTATTATTG+GGG | + | chr5_2:19633020-19633039 | Msa0761890:five_prime_UTR | 10.0% |
| !!! | CATAATTTTTTCTAATATAT+TGG | + | chr5_2:19633310-19633329 | Msa0761890:five_prime_UTR | 10.0% |
| !!! | TTTTTGATTTTTTTTATTCT+TGG | + | chr5_2:19634274-19634293 | Msa0761890:intron | 10.0% |
| !!! | AATAATTTTTTTAGTTGGAT+TGG | + | chr5_2:19632998-19633017 | Msa0761890:five_prime_UTR | 15.0% |
| !! | ATTTCTCAACAAAATATAAT+GGG | - | chr5_2:19634437-19634456 | None:intergenic | 15.0% |
| !!! | TCATATTTCTTTGTATATTT+TGG | + | chr5_2:19634555-19634574 | Msa0761890:intron | 15.0% |
| !!! | TATCTATTTCTTATTTTGAA+GGG | - | chr5_2:19634799-19634818 | None:intergenic | 15.0% |
| !!! | ATATCTATTTCTTATTTTGA+AGG | - | chr5_2:19634800-19634819 | None:intergenic | 15.0% |
| !! | AATAGATATAAAAGATAAAC+TGG | + | chr5_2:19634811-19634830 | Msa0761890:intron | 15.0% |
| !!! | TTTTTTATTGTAATAGTGAT+TGG | - | chr5_2:19635578-19635597 | None:intergenic | 15.0% |
| !! | AATAAAAAAGCAATACTATA+TGG | + | chr5_2:19635589-19635608 | Msa0761890:three_prime_UTR | 15.0% |
| !! | TATCTCATTATGATTCAAAA+TGG | - | chr5_2:19632942-19632961 | None:intergenic | 20.0% |
| !! | TTTGAATCATAATGAGATAT+TGG | + | chr5_2:19632943-19632962 | Msa0761890:five_prime_UTR | 20.0% |
| !! | TTGAATCATAATGAGATATT+GGG | + | chr5_2:19632944-19632963 | Msa0761890:five_prime_UTR | 20.0% |
| !!! | TTTTTGTTGACATTCAATTT+TGG | + | chr5_2:19633080-19633099 | Msa0761890:five_prime_UTR | 20.0% |
| !!! | TTTTGTTGACATTCAATTTT+GGG | + | chr5_2:19633081-19633100 | Msa0761890:five_prime_UTR | 20.0% |
| !!! | ATTGAAGAAATTAATTTGAC+TGG | - | chr5_2:19633124-19633143 | None:intergenic | 20.0% |
| !!! | ATTTCTTCAATTTGCTTAAT+TGG | + | chr5_2:19633133-19633152 | Msa0761890:five_prime_UTR | 20.0% |
| !!! | TTTCTTCAATTTGCTTAATT+GGG | + | chr5_2:19633134-19633153 | Msa0761890:five_prime_UTR | 20.0% |
| !! | TTAATTGGGTTTGATATTTA+AGG | + | chr5_2:19633148-19633167 | Msa0761890:five_prime_UTR | 20.0% |
| !!! | AATAGAAACAATTTCCTTTT+TGG | + | chr5_2:19633240-19633259 | Msa0761890:five_prime_UTR | 20.0% |
| !!! | AAAAAATTTGAGACATAGAA+TGG | - | chr5_2:19633336-19633355 | None:intergenic | 20.0% |
| !!! | TTCTATGTCTCAAATTTTTT+TGG | + | chr5_2:19633336-19633355 | Msa0761890:five_prime_UTR | 20.0% |
| !!! | ATTTTGCTATATTTGTAGTT+TGG | + | chr5_2:19634166-19634185 | Msa0761890:intron | 20.0% |
| !! | TTTCTCAACAAAATATAATG+GGG | - | chr5_2:19634436-19634455 | None:intergenic | 20.0% |
| !! | CATTTCTCAACAAAATATAA+TGG | - | chr5_2:19634438-19634457 | None:intergenic | 20.0% |
| !!! | ACTGTTTTTTTTCTTGTTTA+TGG | + | chr5_2:19634906-19634925 | Msa0761890:intron | 20.0% |
| !! | CAAATTAAGTTCAATTATCT+TGG | - | chr5_2:19635007-19635026 | None:intergenic | 20.0% |
| !! | TCTTTGTACAAATCAAAATT+AGG | + | chr5_2:19635086-19635105 | Msa0761890:intron | 20.0% |
| !! | CTTTGTACAAATCAAAATTA+GGG | + | chr5_2:19635087-19635106 | Msa0761890:intron | 20.0% |
| !! | ATTACATTAGATGCATAATA+TGG | - | chr5_2:19635471-19635490 | None:intergenic | 20.0% |
| !!! | TTTTACAATAAGAAGAGAAA+TGG | - | chr5_2:19635510-19635529 | None:intergenic | 20.0% |
| ! | GAAACAAAATTAAGGAAGAT+CGG | - | chr5_2:19632758-19632777 | None:intergenic | 25.0% |
| !!! | ATCTTCCTTAATTTTGTTTC+CGG | + | chr5_2:19632758-19632777 | Msa0761890:five_prime_UTR | 25.0% |
| !!! | TTTACTCAGAAGTATTTACT+AGG | + | chr5_2:19632883-19632902 | Msa0761890:five_prime_UTR | 25.0% |
| ! | ATTATTGGGGATTAATTTCT+TGG | + | chr5_2:19633033-19633052 | Msa0761890:five_prime_UTR | 25.0% |
| ! | AATAAATTGATCAAAGGACA+AGG | - | chr5_2:19633177-19633196 | None:intergenic | 25.0% |
| ! | TGATGCAATAAATTGATCAA+AGG | - | chr5_2:19633183-19633202 | None:intergenic | 25.0% |
| !!! | TTGGTATTGATACCATTTTT+TGG | + | chr5_2:19633273-19633292 | Msa0761890:five_prime_UTR | 25.0% |
| !!! | TGGTATTGATACCATTTTTT+GGG | + | chr5_2:19633274-19633293 | Msa0761890:five_prime_UTR | 25.0% |
| ! | TAGAAGAAAAGTTGTAACTA+TGG | + | chr5_2:19633508-19633527 | Msa0761890:exon | 25.0% |
| ! | GATGAATTTCCATTAACAAT+AGG | - | chr5_2:19633590-19633609 | None:intergenic | 25.0% |
| ! | TTACCAGAAGAAAATTCATT+TGG | - | chr5_2:19633977-19633996 | None:intergenic | 25.0% |
| !! | AATTTTCTTCTGGTAAGATT+TGG | + | chr5_2:19633981-19634000 | Msa0761890:intron | 25.0% |
| !! | TTTGTCATGTATTATGCTTT+TGG | - | chr5_2:19634244-19634263 | None:intergenic | 25.0% |
| ! | TTCTCAACAAAATATAATGG+GGG | - | chr5_2:19634435-19634454 | None:intergenic | 25.0% |
| ! | GTATAAGTATATGTGCAAAT+TGG | - | chr5_2:19634651-19634670 | None:intergenic | 25.0% |
| !!! | AAAGATTTTTTTTTTAGGGG+AGG | - | chr5_2:19634729-19634748 | None:intergenic | 25.0% |
| ! | TCCCCTAAAAAAAAAATCTT+TGG | + | chr5_2:19634728-19634747 | Msa0761890:intron | 25.0% |
| !!! | GCCAAAGATTTTTTTTTTAG+GGG | - | chr5_2:19634732-19634751 | None:intergenic | 25.0% |
| !!! | GGCCAAAGATTTTTTTTTTA+GGG | - | chr5_2:19634733-19634752 | None:intergenic | 25.0% |
| !!! | AGGCCAAAGATTTTTTTTTT+AGG | - | chr5_2:19634734-19634753 | None:intergenic | 25.0% |
| ! | AAGATCTATTAATACTACTC+AGG | - | chr5_2:19634754-19634773 | None:intergenic | 25.0% |
| ! | GCTTAAATCATCTTATATGA+TGG | + | chr5_2:19634980-19634999 | Msa0761890:intron | 25.0% |
| ! | AACAAACAGCTCAATTAAAA+TGG | - | chr5_2:19635067-19635086 | None:intergenic | 25.0% |
| !! | AGTGGTAATGTAATTAATGA+TGG | + | chr5_2:19635112-19635131 | Msa0761890:intron | 25.0% |
| ! | TGAATGTATCAAATTAGTAC+AGG | - | chr5_2:19635158-19635177 | None:intergenic | 25.0% |
| ! | TAATCCAAAAACAATAAGCA+TGG | - | chr5_2:19635201-19635220 | None:intergenic | 25.0% |
| ! | ATCTTCATCTTGTATGATTA+AGG | + | chr5_2:19635402-19635421 | Msa0761890:three_prime_UTR | 25.0% |
| ! | TCAATTTGCAATGCAAAATT+TGG | + | chr5_2:19635532-19635551 | Msa0761890:three_prime_UTR | 25.0% |
| ! | TCAACTTCAATATTCTACTT+CGG | + | chr5_2:19635641-19635660 | Msa0761890:three_prime_UTR | 25.0% |
| CTTCTTCTACATTTATAGAG+TGG | - | chr5_2:19632605-19632624 | None:intergenic | 30.0% | |
| !! | TGACATTCAATTTTGGGAAA+TGG | + | chr5_2:19633087-19633106 | Msa0761890:five_prime_UTR | 30.0% |
| !! | GACATTCAATTTTGGGAAAT+GGG | + | chr5_2:19633088-19633107 | Msa0761890:five_prime_UTR | 30.0% |
| CCAATTCATAAAAGCCAAAA+AGG | - | chr5_2:19633257-19633276 | None:intergenic | 30.0% | |
| !!! | CCTTTTTGGCTTTTATGAAT+TGG | + | chr5_2:19633254-19633273 | Msa0761890:five_prime_UTR | 30.0% |
| AATTCTTTCTCAAGTTCCTT+GGG | + | chr5_2:19633364-19633383 | Msa0761890:five_prime_UTR | 30.0% | |
| AGCAAAATTGCAAAGCTTAA+GGG | - | chr5_2:19633486-19633505 | None:intergenic | 30.0% | |
| TAGCAAAATTGCAAAGCTTA+AGG | - | chr5_2:19633487-19633506 | None:intergenic | 30.0% | |
| ATGGAAATTCATCTTCTGAA+TGG | + | chr5_2:19633597-19633616 | Msa0761890:CDS | 30.0% | |
| ! | TTTGAAGTTTCCTTTGATGA+AGG | + | chr5_2:19633646-19633665 | Msa0761890:CDS | 30.0% |
| TTGAAGTTTCCTTTGATGAA+GGG | + | chr5_2:19633647-19633666 | Msa0761890:CDS | 30.0% | |
| CAAATAATCAAAGGAAGGTT+AGG | + | chr5_2:19633672-19633691 | Msa0761890:CDS | 30.0% | |
| !!! | GTTGTTTTAGTATCATCTGA+TGG | + | chr5_2:19633743-19633762 | Msa0761890:CDS | 30.0% |
| !! | ATGATTCTGATTGGTCTATT+GGG | + | chr5_2:19633798-19633817 | Msa0761890:CDS | 30.0% |
| !!! | TGATAGAAGTTTTGCTGTTT+TGG | + | chr5_2:19633874-19633893 | Msa0761890:CDS | 30.0% |
| ! | CTACCAAATGAATTTTCTTC+TGG | + | chr5_2:19633971-19633990 | Msa0761890:CDS | 30.0% |
| TTCAAATGCATCAATCTACT+AGG | + | chr5_2:19634304-19634323 | Msa0761890:intron | 30.0% | |
| !! | TCTACTAGGTTTTTGTTTCA+TGG | + | chr5_2:19634318-19634337 | Msa0761890:intron | 30.0% |
| !!! | TTCTAGTCTTGTGTGTTTTT+TGG | + | chr5_2:19634409-19634428 | Msa0761890:intron | 30.0% |
| TTGCACATATACTTATACTC+TGG | + | chr5_2:19634653-19634672 | Msa0761890:intron | 30.0% | |
| AATGTTGAACATAAGCTCTT+TGG | + | chr5_2:19634703-19634722 | Msa0761890:intron | 30.0% | |
| ATATACTTCAAACTGCAAGT+TGG | + | chr5_2:19635035-19635054 | Msa0761890:intron | 30.0% | |
| TATACTTCAAACTGCAAGTT+GGG | + | chr5_2:19635036-19635055 | Msa0761890:intron | 30.0% | |
| CAAATCAAAATTAGGGAAAG+TGG | + | chr5_2:19635094-19635113 | Msa0761890:intron | 30.0% | |
| TACAGGAAATAGAGTTAAGA+GGG | - | chr5_2:19635141-19635160 | None:intergenic | 30.0% | |
| AAAACAATAAGCATGGATAC+AGG | - | chr5_2:19635194-19635213 | None:intergenic | 30.0% | |
| ! | GTATCCATGCTTATTGTTTT+TGG | + | chr5_2:19635194-19635213 | Msa0761890:intron | 30.0% |
| GAAACAATTACATGGAACAA+TGG | + | chr5_2:19635240-19635259 | Msa0761890:CDS | 30.0% | |
| AAGACGAGTTTCATAGTAAC+TGG | + | chr5_2:19632622-19632641 | Msa0761890:five_prime_UTR | 35.0% | |
| AGACGAGTTTCATAGTAACT+GGG | + | chr5_2:19632623-19632642 | Msa0761890:five_prime_UTR | 35.0% | |
| TCTTCTACACATTGTGTTAC+CGG | + | chr5_2:19632701-19632720 | Msa0761890:five_prime_UTR | 35.0% | |
| ! | ACCGGTTTATTTATTATCGC+CGG | + | chr5_2:19632719-19632738 | Msa0761890:five_prime_UTR | 35.0% |
| TCCGGCGATAATAAATAAAC+CGG | - | chr5_2:19632723-19632742 | None:intergenic | 35.0% | |
| AAAAATCCCAAATTTCTCGC+CGG | - | chr5_2:19632805-19632824 | None:intergenic | 35.0% | |
| ACACACACTCAAAGAATCAT+CGG | - | chr5_2:19632829-19632848 | None:intergenic | 35.0% | |
| !! | CTTAGCTTTAGGGTCAAAAT+TGG | - | chr5_2:19632860-19632879 | None:intergenic | 35.0% |
| !! | CAATTTTGACCCTAAAGCTA+AGG | + | chr5_2:19632858-19632877 | Msa0761890:five_prime_UTR | 35.0% |
| !! | GAGTAAAGACCTTAGCTTTA+GGG | - | chr5_2:19632870-19632889 | None:intergenic | 35.0% |
| ! | TGAGTAAAGACCTTAGCTTT+AGG | - | chr5_2:19632871-19632890 | None:intergenic | 35.0% |
| ATTGGGGATTAATTTCTTGG+AGG | + | chr5_2:19633036-19633055 | Msa0761890:five_prime_UTR | 35.0% | |
| CCATTCATGAACCCAAAAAA+TGG | - | chr5_2:19633288-19633307 | None:intergenic | 35.0% | |
| !!! | CCATTTTTTGGGTTCATGAA+TGG | + | chr5_2:19633285-19633304 | Msa0761890:five_prime_UTR | 35.0% |
| CAATTCTTTCTCAAGTTCCT+TGG | + | chr5_2:19633363-19633382 | Msa0761890:five_prime_UTR | 35.0% | |
| GTTCATACCGAAAAATTCCT+TGG | + | chr5_2:19633426-19633445 | Msa0761890:five_prime_UTR | 35.0% | |
| ! | TAGGAAGCCAAGGAATTTTT+CGG | - | chr5_2:19633436-19633455 | None:intergenic | 35.0% |
| ! | CTATGAGTGATGAAGCATTT+AGG | - | chr5_2:19633455-19633474 | None:intergenic | 35.0% |
| GAGAAAGAGCCTATTGTTAA+TGG | + | chr5_2:19633578-19633597 | Msa0761890:CDS | 35.0% | |
| TGAAGTTTCCTTTGATGAAG+GGG | + | chr5_2:19633648-19633667 | Msa0761890:CDS | 35.0% | |
| TTATTTGTCCCCTTCATCAA+AGG | - | chr5_2:19633659-19633678 | None:intergenic | 35.0% | |
| TGAAGGGGACAAATAATCAA+AGG | + | chr5_2:19633663-19633682 | Msa0761890:CDS | 35.0% | |
| !! | GTTTTAGTATCATCTGATGG+TGG | + | chr5_2:19633746-19633765 | Msa0761890:CDS | 35.0% |
| CTGAATCTGATGATTCTGAT+TGG | + | chr5_2:19633789-19633808 | Msa0761890:CDS | 35.0% | |
| !! | GATGATTCTGATTGGTCTAT+TGG | + | chr5_2:19633797-19633816 | Msa0761890:CDS | 35.0% |
| TGTGTCTGTCATTATCATCA+TGG | + | chr5_2:19634129-19634148 | Msa0761890:intron | 35.0% | |
| GTGTCTGTCATTATCATCAT+GGG | + | chr5_2:19634130-19634149 | Msa0761890:intron | 35.0% | |
| TTTGGATTTAGCTACCCAAA+AGG | - | chr5_2:19634226-19634245 | None:intergenic | 35.0% | |
| TGTAACTATGCATGAAACTG+TGG | + | chr5_2:19634367-19634386 | Msa0761890:intron | 35.0% | |
| TGAAACTGTGGATACTATAG+AGG | + | chr5_2:19634379-19634398 | Msa0761890:intron | 35.0% | |
| GAGAGAAAGTTGTCACAAAA+TGG | - | chr5_2:19634478-19634497 | None:intergenic | 35.0% | |
| ACTTACTCTCTCTATTGCTT+TGG | + | chr5_2:19634517-19634536 | Msa0761890:intron | 35.0% | |
| ! | CATTTTTGTTCACAGCTTGT+GGG | - | chr5_2:19634585-19634604 | None:intergenic | 35.0% |
| TTTGAAGGGAACAAATTGCA+GGG | - | chr5_2:19634785-19634804 | None:intergenic | 35.0% | |
| !! | TTTTGAAGGGAACAAATTGC+AGG | - | chr5_2:19634786-19634805 | None:intergenic | 35.0% |
| GTACAGGAAATAGAGTTAAG+AGG | - | chr5_2:19635142-19635161 | None:intergenic | 35.0% | |
| ! | TTACTGATTGAATTTGCAGC+TGG | + | chr5_2:19635218-19635237 | Msa0761890:intron | 35.0% |
| ATCAGAGTTTACAAACACAC+TGG | - | chr5_2:19635306-19635325 | None:intergenic | 35.0% | |
| ! | CTTCTAAAAGGTAGTCAGAA+AGG | - | chr5_2:19635429-19635448 | None:intergenic | 35.0% |
| !! | TGACTACCTTTTAGAAGTAG+AGG | + | chr5_2:19635432-19635451 | Msa0761890:three_prime_UTR | 35.0% |
| TTGCTTCCTCTACTTCTAAA+AGG | - | chr5_2:19635441-19635460 | None:intergenic | 35.0% | |
| TGGAGCTAGAACATACTATA+TGG | + | chr5_2:19635552-19635571 | Msa0761890:three_prime_UTR | 35.0% | |
| GACGAGTTTCATAGTAACTG+GGG | + | chr5_2:19632624-19632643 | Msa0761890:five_prime_UTR | 40.0% | |
| ACGAGTTTCATAGTAACTGG+GGG | + | chr5_2:19632625-19632644 | Msa0761890:five_prime_UTR | 40.0% | |
| CGCTACCGGAAACAAAATTA+AGG | - | chr5_2:19632766-19632785 | None:intergenic | 40.0% | |
| TTTCCGGTAGCGTAAATGAT+CGG | + | chr5_2:19632774-19632793 | Msa0761890:five_prime_UTR | 40.0% | |
| AATCCGATCATTTACGCTAC+CGG | - | chr5_2:19632780-19632799 | None:intergenic | 40.0% | |
| ! | GCGTAAATGATCGGATTTTC+CGG | + | chr5_2:19632783-19632802 | Msa0761890:five_prime_UTR | 40.0% |
| ! | GATTTTCCGGCGAGAAATTT+GGG | + | chr5_2:19632796-19632815 | Msa0761890:five_prime_UTR | 40.0% |
| GATGATTCTTTGAGTGTGTG+TGG | + | chr5_2:19632828-19632847 | Msa0761890:five_prime_UTR | 40.0% | |
| CTAGGTTTCTTCTTGTTCAC+TGG | + | chr5_2:19632901-19632920 | Msa0761890:five_prime_UTR | 40.0% | |
| ! | ATGAAGCATTTAGGAAGCCA+AGG | - | chr5_2:19633446-19633465 | None:intergenic | 40.0% |
| CTTTGACACGTTTGTCTTGT+TGG | + | chr5_2:19633537-19633556 | Msa0761890:CDS | 40.0% | |
| ! | CACGTTTGTCTTGTTGGTTA+TGG | + | chr5_2:19633543-19633562 | Msa0761890:CDS | 40.0% |
| ! | TTGTCTTGTTGGTTATGGAG+AGG | + | chr5_2:19633548-19633567 | Msa0761890:CDS | 40.0% |
| TTGGTTATGGAGAGGTAGTA+AGG | + | chr5_2:19633556-19633575 | Msa0761890:CDS | 40.0% | |
| GGGGACAAATAATCAAAGGA+AGG | + | chr5_2:19633667-19633686 | Msa0761890:CDS | 40.0% | |
| AAAGGAAGGTTAGGAAGAAG+TGG | + | chr5_2:19633681-19633700 | Msa0761890:CDS | 40.0% | |
| !! | TTAGTATCATCTGATGGTGG+TGG | + | chr5_2:19633749-19633768 | Msa0761890:CDS | 40.0% |
| !! | ATTCTGATTGGTCTATTGGG+TGG | + | chr5_2:19633801-19633820 | Msa0761890:CDS | 40.0% |
| ! | CTCTGAAAATCAGAACCATG+AGG | - | chr5_2:19633833-19633852 | None:intergenic | 40.0% |
| ! | TTGGTTCCTTGTTATAGACC+AGG | + | chr5_2:19633893-19633912 | Msa0761890:CDS | 40.0% |
| TTGCAACCTGGTCTATAACA+AGG | - | chr5_2:19633902-19633921 | None:intergenic | 40.0% | |
| TTGTTATAGACCAGGTTGCA+AGG | + | chr5_2:19633901-19633920 | Msa0761890:CDS | 40.0% | |
| GACACACACATTTCTTCATC+AGG | - | chr5_2:19634115-19634134 | None:intergenic | 40.0% | |
| ! | CTGTAAGTGCAATGATGATG+AGG | + | chr5_2:19634200-19634219 | Msa0761890:intron | 40.0% |
| !! | CAATGATGATGAGGCCTTTT+GGG | + | chr5_2:19634209-19634228 | Msa0761890:intron | 40.0% |
| !! | CCATTTTTGTTCACAGCTTG+TGG | - | chr5_2:19634586-19634605 | None:intergenic | 40.0% |
| CCACAAGCTGTGAACAAAAA+TGG | + | chr5_2:19634583-19634602 | Msa0761890:intron | 40.0% | |
| TGCAGCTGGAAACAATTACA+TGG | + | chr5_2:19635232-19635251 | Msa0761890:intron | 40.0% | |
| AAGATGAAGATGCGTGTGTT+TGG | - | chr5_2:19635393-19635412 | None:intergenic | 40.0% | |
| TTCCGTGTAATTCGCGAGTT+AGG | + | chr5_2:19632654-19632673 | Msa0761890:five_prime_UTR | 45.0% | |
| TCCGTGTAATTCGCGAGTTA+GGG | + | chr5_2:19632655-19632674 | Msa0761890:five_prime_UTR | 45.0% | |
| ACCCTAACTCGCGAATTACA+CGG | - | chr5_2:19632659-19632678 | None:intergenic | 45.0% | |
| ! | GGATTTTCCGGCGAGAAATT+TGG | + | chr5_2:19632795-19632814 | Msa0761890:five_prime_UTR | 45.0% |
| GATATCTCTGCACACAACTG+CGG | - | chr5_2:19633404-19633423 | None:intergenic | 45.0% | |
| CAGTTGTGTGCAGAGATATC+TGG | + | chr5_2:19633404-19633423 | Msa0761890:five_prime_UTR | 45.0% | |
| TTAGGAAGAAGTGGCAGAGT+AGG | + | chr5_2:19633690-19633709 | Msa0761890:CDS | 45.0% | |
| TAGGAAGAAGTGGCAGAGTA+GGG | + | chr5_2:19633691-19633710 | Msa0761890:CDS | 45.0% | |
| !! | GCAATGATGATGAGGCCTTT+TGG | + | chr5_2:19634208-19634227 | Msa0761890:intron | 45.0% |
| ACCATCGATCAAACTCTAGC+CGG | - | chr5_2:19635339-19635358 | None:intergenic | 45.0% | |
| TAGAGTTTGATCGATGGTCG+TGG | + | chr5_2:19635341-19635360 | Msa0761890:three_prime_UTR | 45.0% | |
| !!! | AAAAAAATAATTTTTTTAGT+TGG | + | chr5_2:19632993-19633012 | Msa0761890:five_prime_UTR | 5.0% |
| GATCGGAGCGAGAATTTCTC+CGG | - | chr5_2:19632741-19632760 | None:intergenic | 50.0% | |
| TCTCAAGTTCCTTGGGTGAG+TGG | + | chr5_2:19633371-19633390 | Msa0761890:five_prime_UTR | 50.0% | |
| !! | GTATCATCTGATGGTGGTGG+TGG | + | chr5_2:19633752-19633771 | Msa0761890:CDS | 50.0% |
| !! | GGTGGTGGTGGTTGTTTATC+AGG | + | chr5_2:19633764-19633783 | Msa0761890:CDS | 50.0% |
| ATTGGGTGGTTAGAGCCTCA+TGG | + | chr5_2:19633815-19633834 | Msa0761890:CDS | 50.0% | |
| CCTTCAACTTCCTTGCAACC+TGG | - | chr5_2:19633914-19633933 | None:intergenic | 50.0% | |
| CCAGGTTGCAAGGAAGTTGA+AGG | + | chr5_2:19633911-19633930 | Msa0761890:CDS | 50.0% | |
| AACTCTGATTTCCACTGCGC+CGG | + | chr5_2:19635317-19635336 | Msa0761890:three_prime_UTR | 50.0% | |
| GTTTGATCGATGGTCGTGGA+CGG | + | chr5_2:19635345-19635364 | Msa0761890:three_prime_UTR | 50.0% | |
| GGAGACTAACCACTCACCCA+AGG | - | chr5_2:19633383-19633402 | None:intergenic | 55.0% | |
| AGTGGCAGAGTAGGGAAGAG+AGG | + | chr5_2:19633699-19633718 | Msa0761890:CDS | 55.0% | |
| GCCGGCTAGAGTTTGATCGA+TGG | + | chr5_2:19635335-19635354 | Msa0761890:three_prime_UTR | 55.0% | |
| TCAAACTCTAGCCGGCGCAG+TGG | - | chr5_2:19635331-19635350 | None:intergenic | 60.0% | |
| TGATCGATGGTCGTGGACGG+TGG | + | chr5_2:19635348-19635367 | Msa0761890:three_prime_UTR | 60.0% | |
| CGATGGTCGTGGACGGTGGA+AGG | + | chr5_2:19635352-19635371 | Msa0761890:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 19632585 | 19635697 | 19632585 | ID=Msa0761890;Name=Msa0761890 |
| chr5_2 | mRNA | 19632585 | 19635697 | 19632585 | ID=Msa0761890-mRNA-1;Parent=Msa0761890;Name=Msa0761890-mRNA-1;_AED=0.00;_eAED=0.00;_QI=942|1|1|1|1|1|2|405|173 |
| chr5_2 | exon | 19632585 | 19633992 | 19632585 | ID=Msa0761890-mRNA-1:exon:8368;Parent=Msa0761890-mRNA-1 |
| chr5_2 | exon | 19635237 | 19635697 | 19635237 | ID=Msa0761890-mRNA-1:exon:8369;Parent=Msa0761890-mRNA-1 |
| chr5_2 | five_prime_UTR | 19632585 | 19633526 | 19632585 | ID=Msa0761890-mRNA-1:five_prime_utr;Parent=Msa0761890-mRNA-1 |
| chr5_2 | CDS | 19633527 | 19633992 | 19633527 | ID=Msa0761890-mRNA-1:cds;Parent=Msa0761890-mRNA-1 |
| chr5_2 | CDS | 19635237 | 19635292 | 19635237 | ID=Msa0761890-mRNA-1:cds;Parent=Msa0761890-mRNA-1 |
| chr5_2 | three_prime_UTR | 19635293 | 19635697 | 19635293 | ID=Msa0761890-mRNA-1:three_prime_utr;Parent=Msa0761890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
