AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0794900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0794900 MtrunA17_Chr5g0396291 98.897 272 2 1 1 271 1 272 0.0 549
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0794900 AT1G71500.1 81.731 208 38 0 63 270 79 286 9.89e-119 342

Find 98 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGCTTCCAAACGCAATT+TGG 0.233273 5_3:-6781200 None:intergenic
AACGGCAAAGCAGCTGTTAT+TGG 0.246878 5_3:+6780997 Msa0794900:CDS
TTTGAAGGGGACAGGTTTCT+TGG 0.252403 5_3:+6781065 Msa0794900:CDS
GTACATGATGAGTTAGTTTC+TGG 0.262213 5_3:+6781331 Msa0794900:three_prime_UTR
AAATATTTGCCATTGAAAAT+AGG 0.303614 5_3:+6779527 Msa0794900:CDS
GCTACTGAAATTCTCTTTAG+TGG 0.318956 5_3:+6780776 Msa0794900:CDS
TATTGGATTCCTTCTGTTGT+TGG 0.321162 5_3:+6781014 Msa0794900:CDS
CACTTGATGCAAGATTTCTT+TGG 0.325249 5_3:-6781458 None:intergenic
AATTAGACATTGGCCGTGTT+TGG 0.329014 5_3:+6781117 Msa0794900:exon
GATGAGAGTCAACTGGGATT+TGG 0.344981 5_3:+6780949 Msa0794900:CDS
TCTTTCTGTTTCTGCATTTG+TGG 0.346349 5_3:-6779176 None:intergenic
ACTCTCAGAACAGGATTGTT+TGG 0.366935 5_3:-6780656 None:intergenic
TGTTTGGATGCACATATCTT+TGG 0.368547 5_3:+6781504 Msa0794900:three_prime_UTR
GAAGAGCAGGAGAGGGATAG+AGG 0.369307 5_3:-6779253 None:intergenic
AGCGCCGTCACCGGCACAAC+CGG 0.370822 5_3:-6779436 None:intergenic
GTGACCAATCGCAAAGACTT+TGG 0.373345 5_3:-6779358 None:intergenic
AGGTTGTAAAATTAATTTCC+AGG 0.388562 5_3:+6781531 Msa0794900:three_prime_UTR
GACATCGGTTGCTGTTATAC+CGG 0.393967 5_3:-6780810 None:intergenic
AGTGTGTGTTTGAGAAGAGC+AGG 0.401321 5_3:-6779266 None:intergenic
TGGCGGGAGAGGAGAAGAAA+AGG 0.404281 5_3:-6779316 None:intergenic
CAAATTGCGTTTGGAAGCAT+TGG 0.405142 5_3:+6781201 Msa0794900:three_prime_UTR
ACTTATCAGTTCACCGGCAT+TGG 0.405348 5_3:-6781158 None:intergenic
GTTGGTAGCGGCCATGGAAA+TGG 0.411203 5_3:-6779230 None:intergenic
TATGACTGTTTAGGTTAGAA+TGG 0.417094 5_3:+6780921 Msa0794900:intron
GTTAAGTTAGCATACATGTT+TGG 0.427236 5_3:+6781488 Msa0794900:three_prime_UTR
TGACCAATCGCAAAGACTTT+GGG 0.427955 5_3:-6779357 None:intergenic
GAGTTCTAACACCTGCTTTG+AGG 0.431159 5_3:+6780675 Msa0794900:CDS
GCGATTGGTCACTACGTGTA+AGG 0.435232 5_3:+6779369 Msa0794900:CDS
AAGAGCAGGAGAGGGATAGA+GGG 0.443083 5_3:-6779252 None:intergenic
TCGCGTCTCCAAATTGCGTT+TGG 0.447747 5_3:+6781192 Msa0794900:three_prime_UTR
TAGAGGGTTGGTAGCGGCCA+TGG 0.452401 5_3:-6779236 None:intergenic
CGGTGACGGCGCTGCCGAGA+GGG 0.459160 5_3:+6779446 Msa0794900:CDS
AACTGGGATTTGGTTTCAAT+AGG 0.460026 5_3:+6780959 Msa0794900:CDS
AGCGGTTAGAGTGGCGGGAG+AGG 0.473023 5_3:-6779327 None:intergenic
GGTGGTTGATGAGAGTCAAC+TGG 0.480124 5_3:+6780942 Msa0794900:CDS
AGCACATTTGATCTAAGAAC+AGG 0.481228 5_3:+6780614 Msa0794900:CDS
TCAGAATAAGCACCTTCAGC+AGG 0.482430 5_3:-6779553 None:intergenic
GGTGTTAGAACTCTCAGAAC+AGG 0.487394 5_3:-6780665 None:intergenic
GTGTTTGAGAAGAGCAGGAG+AGG 0.489201 5_3:-6779261 None:intergenic
TCTAAGAACAGGAGAGATCA+AGG 0.490541 5_3:+6780625 Msa0794900:CDS
TGCGTAGCGGTTAGAGTGGC+GGG 0.497650 5_3:-6779332 None:intergenic
GCTGAAGGTGCTTATTCTGA+GGG 0.503715 5_3:+6779556 Msa0794900:CDS
GTAACTAACCTGTGTGAGCT+TGG 0.505958 5_3:-6779590 None:intergenic
AGTCCACACAATAACATAAG+AGG 0.507811 5_3:-6779140 None:intergenic
GCAGGAGAGGGATAGAGGGT+TGG 0.508740 5_3:-6779248 None:intergenic
TGCTGAAGGTGCTTATTCTG+AGG 0.509178 5_3:+6779555 Msa0794900:CDS
TGTTTGAGAAGAGCAGGAGA+GGG 0.509351 5_3:-6779260 None:intergenic
CGGCGCTGCCGAGAGGGGAG+AGG 0.510141 5_3:+6779452 Msa0794900:CDS
TGAAATTCTCTTTAGTGGAA+AGG 0.514051 5_3:+6780781 Msa0794900:CDS
TCAAATGTGCTGTCAGTTGT+TGG 0.515547 5_3:-6780602 None:intergenic
GGTAGCATTCTTTCCAATGC+CGG 0.521169 5_3:+6781145 Msa0794900:three_prime_UTR
AAACTGGGTTCCGGTTGTGC+CGG 0.521653 5_3:+6779426 Msa0794900:CDS
TATCCTCTTATGTTATTGTG+TGG 0.522630 5_3:+6779137 Msa0794900:five_prime_UTR
ACAAAGAGGTTCCTCAAAGC+AGG 0.529140 5_3:-6780686 None:intergenic
GAAAAGGTTTACGTGGGAGA+AGG 0.529528 5_3:-6779300 None:intergenic
ATGCACATATCTTTGGTGAC+AGG 0.530497 5_3:+6781511 Msa0794900:three_prime_UTR
AGGAGAAGAAAAGGTTTACG+TGG 0.531404 5_3:-6779307 None:intergenic
ACGCCCAAAGTCTTTGCGAT+TGG 0.531722 5_3:+6779354 Msa0794900:CDS
AGCATCAGATTTGAAACCTC+CGG 0.532026 5_3:-6780753 None:intergenic
CAAACTCCATTCCATTTCCA+TGG 0.533965 5_3:+6779219 Msa0794900:exon
AATATTTATATCAGCATCAC+CGG 0.534811 5_3:+6780734 Msa0794900:CDS
CCTCTCGGCAGCGCCGTCAC+CGG 0.535950 5_3:-6779445 None:intergenic
GGTTCCGGTTGTGCCGGTGA+CGG 0.540591 5_3:+6779432 Msa0794900:CDS
CATTGGCCGTGTTTGGATTG+CGG 0.546897 5_3:+6781124 Msa0794900:three_prime_UTR
GAGGGATAGAGGGTTGGTAG+CGG 0.549456 5_3:-6779242 None:intergenic
GTGCGTAGCGGTTAGAGTGG+CGG 0.551558 5_3:-6779333 None:intergenic
CAAATGTGCTGTCAGTTGTT+GGG 0.553575 5_3:-6780601 None:intergenic
ACATCGGTTGCTGTTATACC+GGG 0.553591 5_3:-6780809 None:intergenic
TTTGCTACTTATCAGTTCAC+CGG 0.556477 5_3:-6781164 None:intergenic
TTACGTGGGAGAAGGAAATG+AGG 0.558204 5_3:-6779292 None:intergenic
GGAGAAGAAAAGGTTTACGT+GGG 0.562615 5_3:-6779306 None:intergenic
CCGGTGACGGCGCTGCCGAG+AGG 0.566317 5_3:+6779445 Msa0794900:CDS
CAGAATAAGCACCTTCAGCA+GGG 0.566319 5_3:-6779552 None:intergenic
AGGCGTGTCATAATTCAAGA+AGG 0.569370 5_3:+6779472 Msa0794900:CDS
TAATGCTCTCAATTAGACAT+TGG 0.572812 5_3:+6781107 Msa0794900:exon
TTTAGTGGAAAGGCTCAGCC+CGG 0.582505 5_3:+6780791 Msa0794900:CDS
GAAAATAGGTCCCCTGCTGA+AGG 0.583894 5_3:+6779541 Msa0794900:CDS
TAGCGGCCATGGAAATGGAA+TGG 0.585998 5_3:-6779225 None:intergenic
ATGGAATGGAGTTTGTGAGA+AGG 0.590618 5_3:-6779211 None:intergenic
GGCGTGTCATAATTCAAGAA+GGG 0.590708 5_3:+6779473 Msa0794900:CDS
GACTGTTTAGGTTAGAATGG+TGG 0.593299 5_3:+6780924 Msa0794900:intron
GGTGACGGCGCTGCCGAGAG+GGG 0.594296 5_3:+6779447 Msa0794900:CDS
GTTCGAAATCCAACAACAGA+AGG 0.602476 5_3:-6781023 None:intergenic
GGCGTGCGTAGCGGTTAGAG+TGG 0.612488 5_3:-6779336 None:intergenic
ATGACACGCCTCTCCCCTCT+CGG 0.613589 5_3:-6779460 None:intergenic
TTTGGACGACTCTTCAGCCA+CGG 0.618145 5_3:-6779404 None:intergenic
TACACTACTAGATAGATACA+AGG 0.628298 5_3:-6781307 None:intergenic
GCGTGTCATAATTCAAGAAG+GGG 0.628961 5_3:+6779474 Msa0794900:CDS
AAGACTTTGGGCGTGCGTAG+CGG 0.635063 5_3:-6779345 None:intergenic
TAAGGCAAGTCAAGTGTCCG+TGG 0.635413 5_3:+6779387 Msa0794900:CDS
AGGAAGAACGAAATAATCAA+CGG 0.648966 5_3:+6780979 Msa0794900:CDS
ATGCTACCGCAATCCAAACA+CGG 0.653617 5_3:-6781130 None:intergenic
AGAATAAGCACCTTCAGCAG+GGG 0.654961 5_3:-6779551 None:intergenic
GAACAGGAGAGATCAAGGAA+TGG 0.658017 5_3:+6780630 Msa0794900:CDS
ATTTATATCAGCATCACCGG+AGG 0.666199 5_3:+6780737 Msa0794900:CDS
TACCTCGTCAACATTGACAT+CGG 0.669152 5_3:-6780825 None:intergenic
AACCGATGTCAATGTTGACG+AGG 0.684840 5_3:+6780823 Msa0794900:CDS
GTGGTTGATGAGAGTCAACT+GGG 0.691875 5_3:+6780943 Msa0794900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGCACTTATTAAAATAAT+TGG + chr5_3:6779680-6779699 Msa0794900:intron 15.0%
!!! AGTCATTGAATTTTAAAATA+AGG - chr5_3:6779873-6779892 None:intergenic 15.0%
!!! ATTTTAAAATTCAATGACTA+TGG + chr5_3:6779874-6779893 Msa0794900:intron 15.0%
!!! TCTTTTCATTTACAAATTTT+TGG - chr5_3:6780094-6780113 None:intergenic 15.0%
!!! ATTTTTTTTTATGACTGTTT+AGG + chr5_3:6780912-6780931 Msa0794900:intron 15.0%
!! AAAAATACAAGATTGTATAT+TGG - chr5_3:6781357-6781376 None:intergenic 15.0%
!! AAATATTTGCCATTGAAAAT+AGG + chr5_3:6779527-6779546 Msa0794900:CDS 20.0%
!! AAAAGAAAGAAGCAAAAATT+AGG + chr5_3:6780108-6780127 Msa0794900:intron 20.0%
!! ACTAATTAATAACTTTGCAA+GGG - chr5_3:6780508-6780527 None:intergenic 20.0%
!! ACATTCTGATCAATTATATA+CGG + chr5_3:6780862-6780881 Msa0794900:intron 20.0%
!! GAATGTGAACTATAAAAATT+GGG - chr5_3:6781406-6781425 None:intergenic 20.0%
!! TGAATGTGAACTATAAAAAT+TGG - chr5_3:6781407-6781426 None:intergenic 20.0%
! TTTCTTAGGATAATGTCTTT+AGG + chr5_3:6779613-6779632 Msa0794900:intron 25.0%
!!! CCTATAAAAGTTGTTTTGAT+AGG - chr5_3:6779643-6779662 None:intergenic 25.0%
!! CCTATCAAAACAACTTTTAT+AGG + chr5_3:6779640-6779659 Msa0794900:intron 25.0%
! TTGAAATAAGTGATTGCTAT+AGG + chr5_3:6779967-6779986 Msa0794900:intron 25.0%
!!! GGTCTTTTTTTAAGCAAAAT+TGG + chr5_3:6779988-6780007 Msa0794900:intron 25.0%
! AAATCTGACCTAATTAAATC+AGG + chr5_3:6780153-6780172 Msa0794900:intron 25.0%
! AATCTGACCTAATTAAATCA+GGG + chr5_3:6780154-6780173 Msa0794900:intron 25.0%
! ACTATTTCCCTGATTTAATT+AGG - chr5_3:6780164-6780183 None:intergenic 25.0%
!! TCTTCATCTTTGATTTACTT+CGG - chr5_3:6780191-6780210 None:intergenic 25.0%
!! AATGCATGATAATGTCAATT+GGG + chr5_3:6780406-6780425 Msa0794900:intron 25.0%
! GACTAATTAATAACTTTGCA+AGG - chr5_3:6780509-6780528 None:intergenic 25.0%
! CATAGAGAAAACAAAACAAT+TGG - chr5_3:6780561-6780580 None:intergenic 25.0%
! AATATTTATATCAGCATCAC+CGG + chr5_3:6780734-6780753 Msa0794900:CDS 25.0%
! TAGATACAAGGCATAAAAAA+AGG - chr5_3:6781298-6781317 None:intergenic 25.0%
! AGGTTGTAAAATTAATTTCC+AGG + chr5_3:6781531-6781550 Msa0794900:three_prime_UTR 25.0%
TATCCTCTTATGTTATTGTG+TGG + chr5_3:6779137-6779156 Msa0794900:five_prime_UTR 30.0%
TGTCTAAGGAAAGACTAATT+CGG - chr5_3:6779842-6779861 None:intergenic 30.0%
TGTCAACAATCAAAACTACT+AGG + chr5_3:6780032-6780051 Msa0794900:intron 30.0%
AACAATCAAAACTACTAGGT+TGG + chr5_3:6780036-6780055 Msa0794900:intron 30.0%
!!! GGTCAGATTTTTTCAACAAT+AGG - chr5_3:6780143-6780162 None:intergenic 30.0%
! CAATGCATGATAATGTCAAT+TGG + chr5_3:6780405-6780424 Msa0794900:intron 30.0%
AATTAATAACTTTGCAAGGG+TGG - chr5_3:6780505-6780524 None:intergenic 30.0%
!!! TTGTTTTGTTTTCTCTATGC+AGG + chr5_3:6780562-6780581 Msa0794900:intron 30.0%
! TTTTGACAGGATATACAAAG+AGG - chr5_3:6780703-6780722 None:intergenic 30.0%
TGAAATTCTCTTTAGTGGAA+AGG + chr5_3:6780781-6780800 Msa0794900:CDS 30.0%
! TATGACTGTTTAGGTTAGAA+TGG + chr5_3:6780921-6780940 Msa0794900:intron 30.0%
AGGAAGAACGAAATAATCAA+CGG + chr5_3:6780979-6780998 Msa0794900:CDS 30.0%
! TTGGATTTCGAACTTTTAAC+AGG + chr5_3:6781033-6781052 Msa0794900:CDS 30.0%
! TTTCGAACTTTTAACAGGTA+AGG + chr5_3:6781038-6781057 Msa0794900:CDS 30.0%
! TTCGAACTTTTAACAGGTAA+GGG + chr5_3:6781039-6781058 Msa0794900:CDS 30.0%
TAATGCTCTCAATTAGACAT+TGG + chr5_3:6781107-6781126 Msa0794900:exon 30.0%
TACACTACTAGATAGATACA+AGG - chr5_3:6781310-6781329 None:intergenic 30.0%
GTTAAGTTAGCATACATGTT+TGG + chr5_3:6781488-6781507 Msa0794900:three_prime_UTR 30.0%
CAAAAAAAGACATACTTTCC+TGG - chr5_3:6781552-6781571 None:intergenic 30.0%
AGTCCACACAATAACATAAG+AGG - chr5_3:6779143-6779162 None:intergenic 35.0%
!! TCTTTCTGTTTCTGCATTTG+TGG - chr5_3:6779179-6779198 None:intergenic 35.0%
! CACAGGTTAGTTACTTTCTT+AGG + chr5_3:6779599-6779618 Msa0794900:intron 35.0%
ATAAGGCAAATCACTGTCTA+AGG - chr5_3:6779856-6779875 None:intergenic 35.0%
! CATCTTTGATTTACTTCGGT+GGG - chr5_3:6780187-6780206 None:intergenic 35.0%
! TCATCTTTGATTTACTTCGG+TGG - chr5_3:6780188-6780207 None:intergenic 35.0%
TACTGATAAGCTGCTTCATA+TGG - chr5_3:6780216-6780235 None:intergenic 35.0%
!! TTTGTTTTCTCTATGCAGGA+TGG + chr5_3:6780566-6780585 Msa0794900:intron 35.0%
AGCACATTTGATCTAAGAAC+AGG + chr5_3:6780614-6780633 Msa0794900:CDS 35.0%
!!! TTTTGTTCGTCTGTTTTGAC+AGG - chr5_3:6780716-6780735 None:intergenic 35.0%
GCTACTGAAATTCTCTTTAG+TGG + chr5_3:6780776-6780795 Msa0794900:CDS 35.0%
! AACTGGGATTTGGTTTCAAT+AGG + chr5_3:6780959-6780978 Msa0794900:CDS 35.0%
TATTGGATTCCTTCTGTTGT+TGG + chr5_3:6781014-6781033 Msa0794900:CDS 35.0%
! TTTGCTACTTATCAGTTCAC+CGG - chr5_3:6781167-6781186 None:intergenic 35.0%
! GTACATGATGAGTTAGTTTC+TGG + chr5_3:6781331-6781350 Msa0794900:three_prime_UTR 35.0%
CACTTGATGCAAGATTTCTT+TGG - chr5_3:6781461-6781480 None:intergenic 35.0%
TGTTTGGATGCACATATCTT+TGG + chr5_3:6781504-6781523 Msa0794900:three_prime_UTR 35.0%
ATGGAATGGAGTTTGTGAGA+AGG - chr5_3:6779214-6779233 None:intergenic 40.0%
CAAACTCCATTCCATTTCCA+TGG + chr5_3:6779219-6779238 Msa0794900:exon 40.0%
GGAGAAGAAAAGGTTTACGT+GGG - chr5_3:6779309-6779328 None:intergenic 40.0%
AGGAGAAGAAAAGGTTTACG+TGG - chr5_3:6779310-6779329 None:intergenic 40.0%
TGACCAATCGCAAAGACTTT+GGG - chr5_3:6779360-6779379 None:intergenic 40.0%
TGAAGAGTCGTCCAAAAACT+GGG + chr5_3:6779411-6779430 Msa0794900:CDS 40.0%
AGGCGTGTCATAATTCAAGA+AGG + chr5_3:6779472-6779491 Msa0794900:CDS 40.0%
GGCGTGTCATAATTCAAGAA+GGG + chr5_3:6779473-6779492 Msa0794900:CDS 40.0%
GCGTGTCATAATTCAAGAAG+GGG + chr5_3:6779474-6779493 Msa0794900:CDS 40.0%
!! GGGAGACTATATTGCTTTTG+TGG + chr5_3:6779494-6779513 Msa0794900:CDS 40.0%
ACTTATATGATTGCCCACGT+GGG + chr5_3:6779718-6779737 Msa0794900:intron 40.0%
CTAAGGAAAGACTAATTCGG+AGG - chr5_3:6779839-6779858 None:intergenic 40.0%
CTTCACCATAGTCTAAACCT+CGG + chr5_3:6780298-6780317 Msa0794900:intron 40.0%
ACGTACACGAAAAAGGTCTT+GGG - chr5_3:6780379-6780398 None:intergenic 40.0%
AACGTACACGAAAAAGGTCT+TGG - chr5_3:6780380-6780399 None:intergenic 40.0%
CAAATGTGCTGTCAGTTGTT+GGG - chr5_3:6780604-6780623 None:intergenic 40.0%
TCAAATGTGCTGTCAGTTGT+TGG - chr5_3:6780605-6780624 None:intergenic 40.0%
TCTAAGAACAGGAGAGATCA+AGG + chr5_3:6780625-6780644 Msa0794900:CDS 40.0%
ACTCTCAGAACAGGATTGTT+TGG - chr5_3:6780659-6780678 None:intergenic 40.0%
ATTTATATCAGCATCACCGG+AGG + chr5_3:6780737-6780756 Msa0794900:CDS 40.0%
! AGCATCAGATTTGAAACCTC+CGG - chr5_3:6780756-6780775 None:intergenic 40.0%
TACCTCGTCAACATTGACAT+CGG - chr5_3:6780828-6780847 None:intergenic 40.0%
TATATACGGACTCGTTGCAA+TGG + chr5_3:6780876-6780895 Msa0794900:intron 40.0%
! GACTGTTTAGGTTAGAATGG+TGG + chr5_3:6780924-6780943 Msa0794900:intron 40.0%
GTTCGAAATCCAACAACAGA+AGG - chr5_3:6781026-6781045 None:intergenic 40.0%
! AACAGGTAAGGGTCTTTTGA+AGG + chr5_3:6781050-6781069 Msa0794900:CDS 40.0%
! ACAGGTAAGGGTCTTTTGAA+GGG + chr5_3:6781051-6781070 Msa0794900:CDS 40.0%
AATTAGACATTGGCCGTGTT+TGG + chr5_3:6781117-6781136 Msa0794900:exon 40.0%
CAATGCTTCCAAACGCAATT+TGG - chr5_3:6781203-6781222 None:intergenic 40.0%
! CAAATTGCGTTTGGAAGCAT+TGG + chr5_3:6781201-6781220 Msa0794900:three_prime_UTR 40.0%
! ATGCACATATCTTTGGTGAC+AGG + chr5_3:6781511-6781530 Msa0794900:three_prime_UTR 40.0%
TGTTTGAGAAGAGCAGGAGA+GGG - chr5_3:6779263-6779282 None:intergenic 45.0%
AGTGTGTGTTTGAGAAGAGC+AGG - chr5_3:6779269-6779288 None:intergenic 45.0%
TTACGTGGGAGAAGGAAATG+AGG - chr5_3:6779295-6779314 None:intergenic 45.0%
GAAAAGGTTTACGTGGGAGA+AGG - chr5_3:6779303-6779322 None:intergenic 45.0%
GTGACCAATCGCAAAGACTT+TGG - chr5_3:6779361-6779380 None:intergenic 45.0%
CTGAAGAGTCGTCCAAAAAC+TGG + chr5_3:6779410-6779429 Msa0794900:CDS 45.0%
! AGCAGGGGACCTATTTTCAA+TGG - chr5_3:6779539-6779558 None:intergenic 45.0%
AGAATAAGCACCTTCAGCAG+GGG - chr5_3:6779554-6779573 None:intergenic 45.0%
CAGAATAAGCACCTTCAGCA+GGG - chr5_3:6779555-6779574 None:intergenic 45.0%
TCAGAATAAGCACCTTCAGC+AGG - chr5_3:6779556-6779575 None:intergenic 45.0%
!! TGCTGAAGGTGCTTATTCTG+AGG + chr5_3:6779555-6779574 Msa0794900:CDS 45.0%
!! GCTGAAGGTGCTTATTCTGA+GGG + chr5_3:6779556-6779575 Msa0794900:CDS 45.0%
GAAAAATGCCAAGCTCACAC+AGG + chr5_3:6779582-6779601 Msa0794900:CDS 45.0%
GTAACTAACCTGTGTGAGCT+TGG - chr5_3:6779593-6779612 None:intergenic 45.0%
CACTTATATGATTGCCCACG+TGG + chr5_3:6779717-6779736 Msa0794900:intron 45.0%
GATGAGTCTGAGAACTTGAG+AGG - chr5_3:6779775-6779794 None:intergenic 45.0%
TCAAGTTCTCAGACTCATCC+TGG + chr5_3:6779776-6779795 Msa0794900:intron 45.0%
CGAGGTTTAGACTATGGTGA+AGG - chr5_3:6780300-6780319 None:intergenic 45.0%
GAAGACCGAGGTTTAGACTA+TGG - chr5_3:6780306-6780325 None:intergenic 45.0%
TGATTTGAGCCAAGGGTTGA+AGG - chr5_3:6780342-6780361 None:intergenic 45.0%
CACGAAAAAGGTCTTGGGTT+GGG - chr5_3:6780374-6780393 None:intergenic 45.0%
ACACGAAAAAGGTCTTGGGT+TGG - chr5_3:6780375-6780394 None:intergenic 45.0%
GCACACAACGTACACGAAAA+AGG - chr5_3:6780386-6780405 None:intergenic 45.0%
GAACAGGAGAGATCAAGGAA+TGG + chr5_3:6780630-6780649 Msa0794900:CDS 45.0%
GGTGTTAGAACTCTCAGAAC+AGG - chr5_3:6780668-6780687 None:intergenic 45.0%
! GAGTTCTAACACCTGCTTTG+AGG + chr5_3:6780675-6780694 Msa0794900:CDS 45.0%
ACAAAGAGGTTCCTCAAAGC+AGG - chr5_3:6780689-6780708 None:intergenic 45.0%
! ACATCGGTTGCTGTTATACC+GGG - chr5_3:6780812-6780831 None:intergenic 45.0%
! GACATCGGTTGCTGTTATAC+CGG - chr5_3:6780813-6780832 None:intergenic 45.0%
AACCGATGTCAATGTTGACG+AGG + chr5_3:6780823-6780842 Msa0794900:CDS 45.0%
!! GTGGTTGATGAGAGTCAACT+GGG + chr5_3:6780943-6780962 Msa0794900:CDS 45.0%
GATGAGAGTCAACTGGGATT+TGG + chr5_3:6780949-6780968 Msa0794900:CDS 45.0%
AACGGCAAAGCAGCTGTTAT+TGG + chr5_3:6780997-6781016 Msa0794900:CDS 45.0%
!! CAGGTAAGGGTCTTTTGAAG+GGG + chr5_3:6781052-6781071 Msa0794900:CDS 45.0%
TTTGAAGGGGACAGGTTTCT+TGG + chr5_3:6781065-6781084 Msa0794900:CDS 45.0%
ATGCTACCGCAATCCAAACA+CGG - chr5_3:6781133-6781152 None:intergenic 45.0%
GGTAGCATTCTTTCCAATGC+CGG + chr5_3:6781145-6781164 Msa0794900:three_prime_UTR 45.0%
ACTTATCAGTTCACCGGCAT+TGG - chr5_3:6781161-6781180 None:intergenic 45.0%
TAGCGGCCATGGAAATGGAA+TGG - chr5_3:6779228-6779247 None:intergenic 50.0%
AAGAGCAGGAGAGGGATAGA+GGG - chr5_3:6779255-6779274 None:intergenic 50.0%
GTGTTTGAGAAGAGCAGGAG+AGG - chr5_3:6779264-6779283 None:intergenic 50.0%
ACGCCCAAAGTCTTTGCGAT+TGG + chr5_3:6779354-6779373 Msa0794900:CDS 50.0%
! GCGATTGGTCACTACGTGTA+AGG + chr5_3:6779369-6779388 Msa0794900:CDS 50.0%
TAAGGCAAGTCAAGTGTCCG+TGG + chr5_3:6779387-6779406 Msa0794900:CDS 50.0%
TTTGGACGACTCTTCAGCCA+CGG - chr5_3:6779407-6779426 None:intergenic 50.0%
GTCGTCCAAAAACTGGGTTC+CGG + chr5_3:6779417-6779436 Msa0794900:CDS 50.0%
! CACAACCGGAACCCAGTTTT+TGG - chr5_3:6779425-6779444 None:intergenic 50.0%
GAAAATAGGTCCCCTGCTGA+AGG + chr5_3:6779541-6779560 Msa0794900:CDS 50.0%
ATATGATTGCCCACGTGGGT+TGG + chr5_3:6779722-6779741 Msa0794900:intron 50.0%
!! ATCCTGGTGCCGGTTTATGT+GGG + chr5_3:6779792-6779811 Msa0794900:intron 50.0%
GTTAGAGGACTTGAAGACCG+AGG - chr5_3:6780318-6780337 None:intergenic 50.0%
CCAAGGGTTGAAGGAGTTAG+AGG - chr5_3:6780333-6780352 None:intergenic 50.0%
CCTCTAACTCCTTCAACCCT+TGG + chr5_3:6780330-6780349 Msa0794900:intron 50.0%
!! GCTCAGCTGATTTGAGCCAA+GGG - chr5_3:6780349-6780368 None:intergenic 50.0%
!! AGCTCAGCTGATTTGAGCCA+AGG - chr5_3:6780350-6780369 None:intergenic 50.0%
TTTAGTGGAAAGGCTCAGCC+CGG + chr5_3:6780791-6780810 Msa0794900:CDS 50.0%
!! GGTGGTTGATGAGAGTCAAC+TGG + chr5_3:6780942-6780961 Msa0794900:CDS 50.0%
!! AAGGGTCTTTTGAAGGGGAC+AGG + chr5_3:6781057-6781076 Msa0794900:CDS 50.0%
CATTGGCCGTGTTTGGATTG+CGG + chr5_3:6781124-6781143 Msa0794900:three_prime_UTR 50.0%
TCGCGTCTCCAAATTGCGTT+TGG + chr5_3:6781192-6781211 Msa0794900:three_prime_UTR 50.0%
!! GTTGGTAGCGGCCATGGAAA+TGG - chr5_3:6779233-6779252 None:intergenic 55.0%
!! GAGGGATAGAGGGTTGGTAG+CGG - chr5_3:6779245-6779264 None:intergenic 55.0%
GAAGAGCAGGAGAGGGATAG+AGG - chr5_3:6779256-6779275 None:intergenic 55.0%
TGGCGGGAGAGGAGAAGAAA+AGG - chr5_3:6779319-6779338 None:intergenic 55.0%
AAGACTTTGGGCGTGCGTAG+CGG - chr5_3:6779348-6779367 None:intergenic 55.0%
AAACTGGGTTCCGGTTGTGC+CGG + chr5_3:6779426-6779445 Msa0794900:CDS 55.0%
TCTCAGACTCATCCTGGTGC+CGG + chr5_3:6779782-6779801 Msa0794900:intron 55.0%
!! CATCCTGGTGCCGGTTTATG+TGG + chr5_3:6779791-6779810 Msa0794900:intron 55.0%
!! TAGAGGGTTGGTAGCGGCCA+TGG - chr5_3:6779239-6779258 None:intergenic 60.0%
GCAGGAGAGGGATAGAGGGT+TGG - chr5_3:6779251-6779270 None:intergenic 60.0%
TGCGTAGCGGTTAGAGTGGC+GGG - chr5_3:6779335-6779354 None:intergenic 60.0%
GTGCGTAGCGGTTAGAGTGG+CGG - chr5_3:6779336-6779355 None:intergenic 60.0%
ATGACACGCCTCTCCCCTCT+CGG - chr5_3:6779463-6779482 None:intergenic 60.0%
!! ATTGCCCACGTGGGTTGGTC+TGG + chr5_3:6779727-6779746 Msa0794900:intron 60.0%
ACCACCAGACCAACCCACGT+GGG - chr5_3:6779734-6779753 None:intergenic 60.0%
!! TGGTGCCGGTTTATGTGGGC+CGG + chr5_3:6779796-6779815 Msa0794900:intron 60.0%
GTCCACCGGCCCACATAAAC+CGG - chr5_3:6779804-6779823 None:intergenic 60.0%
GGTTTATGTGGGCCGGTGGA+CGG + chr5_3:6779803-6779822 Msa0794900:intron 60.0%
GGACCAATCCAACCGTCCAC+CGG - chr5_3:6779818-6779837 None:intergenic 60.0%
! AGCGGTTAGAGTGGCGGGAG+AGG - chr5_3:6779330-6779349 None:intergenic 65.0%
GGCGTGCGTAGCGGTTAGAG+TGG - chr5_3:6779339-6779358 None:intergenic 65.0%
! GGTTCCGGTTGTGCCGGTGA+CGG + chr5_3:6779432-6779451 Msa0794900:CDS 65.0%
CACCACCAGACCAACCCACG+TGG - chr5_3:6779735-6779754 None:intergenic 65.0%
GGCCCACATAAACCGGCACC+AGG - chr5_3:6779797-6779816 None:intergenic 65.0%
!! TGCCGGTTTATGTGGGCCGG+TGG + chr5_3:6779799-6779818 Msa0794900:intron 65.0%
TATGTGGGCCGGTGGACGGT+TGG + chr5_3:6779807-6779826 Msa0794900:intron 65.0%
AGCGCCGTCACCGGCACAAC+CGG - chr5_3:6779439-6779458 None:intergenic 70.0%
!! GCCCACGTGGGTTGGTCTGG+TGG + chr5_3:6779730-6779749 Msa0794900:intron 70.0%
GGGCCGGTGGACGGTTGGAT+TGG + chr5_3:6779812-6779831 Msa0794900:intron 70.0%
CCTCTCGGCAGCGCCGTCAC+CGG - chr5_3:6779448-6779467 None:intergenic 75.0%
! CGGTGACGGCGCTGCCGAGA+GGG + chr5_3:6779446-6779465 Msa0794900:CDS 75.0%
! GGTGACGGCGCTGCCGAGAG+GGG + chr5_3:6779447-6779466 Msa0794900:CDS 75.0%
!! CCGGTGACGGCGCTGCCGAG+AGG + chr5_3:6779445-6779464 Msa0794900:CDS 80.0%
! CGGCGCTGCCGAGAGGGGAG+AGG + chr5_3:6779452-6779471 Msa0794900:CDS 80.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 6779122 6781628 6779122 ID=Msa0794900;Name=Msa0794900
chr5_3 mRNA 6779122 6781628 6779122 ID=Msa0794900-mRNA-1;Parent=Msa0794900;Name=Msa0794900-mRNA-1;_AED=0.00;_eAED=0.00;_QI=116|1|1|1|1|1|3|506|271
chr5_3 exon 6779122 6779603 6779122 ID=Msa0794900-mRNA-1:exon:2714;Parent=Msa0794900-mRNA-1
chr5_3 exon 6780584 6780844 6780584 ID=Msa0794900-mRNA-1:exon:2715;Parent=Msa0794900-mRNA-1
chr5_3 exon 6780934 6781628 6780934 ID=Msa0794900-mRNA-1:exon:2716;Parent=Msa0794900-mRNA-1
chr5_3 five_prime_UTR 6779122 6779237 6779122 ID=Msa0794900-mRNA-1:five_prime_utr;Parent=Msa0794900-mRNA-1
chr5_3 CDS 6779238 6779603 6779238 ID=Msa0794900-mRNA-1:cds;Parent=Msa0794900-mRNA-1
chr5_3 CDS 6780584 6780844 6780584 ID=Msa0794900-mRNA-1:cds;Parent=Msa0794900-mRNA-1
chr5_3 CDS 6780934 6781122 6780934 ID=Msa0794900-mRNA-1:cds;Parent=Msa0794900-mRNA-1
chr5_3 three_prime_UTR 6781123 6781628 6781123 ID=Msa0794900-mRNA-1:three_prime_utr;Parent=Msa0794900-mRNA-1
Gene Sequence

>Msa0794900

ATGGCCGCTACCAACCCTCTATCCCTCTCCTGCTCTTCTCAAACACACACTTCTCCTCATTTCCTTCTCCCACGTAAACCTTTTCTTCTCCTCTCCCGCCACTCTAACCGCTACGCACGCCCAAAGTCTTTGCGATTGGTCACTACGTGTAAGGCAAGTCAAGTGTCCGTGGCTGAAGAGTCGTCCAAAAACTGGGTTCCGGTTGTGCCGGTGACGGCGCTGCCGAGAGGGGAGAGGCGTGTCATAATTCAAGAAGGGGAGACTATATTGCTTTTGTGGTATAAAGATCAAATATTTGCCATTGAAAATAGGTCCCCTGCTGAAGGTGCTTATTCTGAGGGCTTGAAAAATGCCAAGCTCACACAGGATGGTTGTATAGTTTGCCCAACAACTGACAGCACATTTGATCTAAGAACAGGAGAGATCAAGGAATGGTATCCAAACAATCCTGTTCTGAGAGTTCTAACACCTGCTTTGAGGAACCTCTTTGTATATCCTGTCAAAACAGACGAACAAAATATTTATATCAGCATCACCGGAGGTTTCAAATCTGATGCTGCTACTGAAATTCTCTTTAGTGGAAAGGCTCAGCCCGGTATAACAGCAACCGATGTCAATGTTGACGAGGTTAGAATGGTGGTTGATGAGAGTCAACTGGGATTTGGTTTCAATAGGAAGAACGAAATAATCAACGGCAAAGCAGCTGTTATTGGATTCCTTCTGTTGTTGGATTTCGAACTTTTAACAGGTAAGGGTCTTTTGAAGGGGACAGGTTTCTTGGACTTCATATATTCTGCATCTAATGCTCTCAATTAG

Protein sequence

>Msa0794900

MAATNPLSLSCSSQTHTSPHFLLPRKPFLLLSRHSNRYARPKSLRLVTTCKASQVSVAEESSKNWVPVVPVTALPRGERRVIIQEGETILLLWYKDQIFAIENRSPAEGAYSEGLKNAKLTQDGCIVCPTTDSTFDLRTGEIKEWYPNNPVLRVLTPALRNLFVYPVKTDEQNIYISITGGFKSDAATEILFSGKAQPGITATDVNVDEVRMVVDESQLGFGFNRKNEIINGKAAVIGFLLLLDFELLTGKGLLKGTGFLDFIYSASNALN*