AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0971690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0971690 MtrunA17_Chr6g0450641 98.489 331 3 2 1 329 1 331 0.0 656
Msa0971690 MtrunA17_Chr5g0413551 63.566 258 90 1 72 329 3 256 4.42e-122 351
Msa0971690 MtrunA17_Chr8g0365441 64.981 257 85 3 72 328 3 254 1.02e-119 345
Msa0971690 MtrunA17_Chr3g0117661 56.667 240 101 1 78 317 9 245 4.51e-96 285
Msa0971690 MtrunA17_Chr3g0117691 56.250 240 102 1 78 317 9 245 1.02e-94 281
Msa0971690 MtrunA17_Chr2g0279581 51.777 197 92 2 125 321 89 282 4.07e-68 215
Msa0971690 MtrunA17_Chr5g0427341 46.701 197 103 2 125 321 94 288 1.99e-58 190
Msa0971690 MtrunA17_Chr3g0117671 68.182 44 14 0 156 199 1 44 1.13e-16 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0971690 AT3G01500.3 68.047 338 97 4 1 329 1 336 5.12e-150 425
Msa0971690 AT3G01500.2 68.047 338 97 4 1 329 1 336 6.83e-150 425
Msa0971690 AT3G01500.4 74.615 260 64 2 71 329 1 259 2.18e-139 395
Msa0971690 AT3G01500.1 74.615 260 64 2 71 329 1 259 4.28e-139 395
Msa0971690 AT5G14740.9 70.000 260 76 2 71 329 1 259 7.00e-132 376
Msa0971690 AT5G14740.8 70.000 260 76 2 71 329 1 259 7.00e-132 376
Msa0971690 AT5G14740.7 70.000 260 76 2 71 329 1 259 7.00e-132 376
Msa0971690 AT5G14740.2 70.000 260 76 2 71 329 1 259 7.00e-132 376
Msa0971690 AT5G14740.6 70.000 260 76 2 71 329 1 259 7.00e-132 376
Msa0971690 AT5G14740.1 69.202 263 80 1 67 329 70 331 8.78e-132 379
Msa0971690 AT5G14740.4 68.821 263 80 2 67 329 70 330 2.49e-129 372
Msa0971690 AT5G14740.3 68.061 263 82 2 67 329 70 330 3.98e-128 369
Msa0971690 AT1G70410.3 58.824 255 100 2 75 328 6 256 2.46e-109 319
Msa0971690 AT1G70410.1 58.824 255 100 2 75 328 6 256 2.46e-109 319
Msa0971690 AT1G70410.2 57.795 263 105 3 68 328 20 278 3.30e-109 319
Msa0971690 AT1G23730.2 53.488 258 115 2 73 329 4 257 2.73e-100 296
Msa0971690 AT1G23730.1 53.488 258 115 2 73 329 4 257 2.73e-100 296
Msa0971690 AT5G14740.5 66.986 209 68 1 67 275 70 277 3.29e-98 293
Msa0971690 AT4G33580.3 44.118 238 130 3 87 324 48 282 1.89e-62 201
Msa0971690 AT4G33580.1 44.118 238 130 3 87 324 48 282 1.89e-62 201
Msa0971690 AT4G33580.2 43.933 239 130 4 87 324 48 283 1.38e-61 199
Msa0971690 AT1G58180.7 42.132 197 113 1 123 319 26 221 4.13e-51 169
Msa0971690 AT1G58180.3 42.132 197 113 1 123 319 26 221 4.13e-51 169
Msa0971690 AT1G58180.6 42.132 197 113 1 123 319 26 221 4.13e-51 169
Msa0971690 AT1G58180.2 42.132 197 113 1 123 319 77 272 1.46e-50 170
Msa0971690 AT1G58180.4 42.132 197 113 1 123 319 77 272 1.46e-50 170
Msa0971690 AT1G58180.1 41.538 195 98 2 123 317 77 255 1.38e-46 158
Msa0971690 AT1G58180.5 45.098 153 83 1 123 275 77 228 5.12e-39 139

Find 111 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTTTGGTTACATTAAAA+TGG 0.130582 6_4:+3737354 Msa0971690:five_prime_UTR
TAGCAAACTGGCAGATTATT+TGG 0.156433 6_4:+3742173 Msa0971690:three_prime_UTR
GAGCTTTGGGGACTTGAATT+TGG 0.157327 6_4:+3741568 Msa0971690:CDS
AGAGAGACTAAAGCCGTTTA+TGG 0.187138 6_4:-3737461 None:intergenic
GCCTTCACCTTTGCCTTTGC+AGG 0.194024 6_4:-3740869 None:intergenic
CAGTGCTTGTGGTGGTATTA+AGG 0.198916 6_4:+3740344 Msa0971690:CDS
TTTAGTGTATATACCAAAAC+TGG 0.244721 6_4:-3737640 None:intergenic
TCCTATCATCACCCCAGTTT+TGG 0.256292 6_4:+3737627 Msa0971690:CDS
TCTGCCAGTTTGCTAGCTTA+TGG 0.285698 6_4:-3742165 None:intergenic
ATTGAGGAGTGGGTCAAAAT+TGG 0.295969 6_4:+3740842 Msa0971690:CDS
ATAATATGATGAAAGTTTAT+AGG 0.317340 6_4:-3741963 None:intergenic
AACAAAACATTGGCACTAAA+AGG 0.320612 6_4:+3741514 Msa0971690:CDS
AGCTATAATCTCATGCTTAA+AGG 0.323897 6_4:+3741918 Msa0971690:three_prime_UTR
TATCATCTTAAATAAGAGTT+TGG 0.333284 6_4:+3742046 Msa0971690:three_prime_UTR
ACCTTTGGTTACATTAAAAT+GGG 0.337350 6_4:+3737355 Msa0971690:five_prime_UTR
CTTATGGAGAACAAGGAAAA+TGG 0.339322 6_4:-3742149 None:intergenic
AAACATGGAGATGCACCTTT+TGG 0.343398 6_4:+3740893 Msa0971690:CDS
CCATAACCTTAAGGTCCCTT+TGG 0.355894 6_4:-3737240 None:intergenic
CCAAAGGGACCTTAAGGTTA+TGG 0.376245 6_4:+3737240 Msa0971690:five_prime_UTR
AGCAAACTGGCAGATTATTT+GGG 0.383349 6_4:+3742174 Msa0971690:three_prime_UTR
ACCAATCCCTCTCTTACAAA+TGG 0.395528 6_4:-3741490 None:intergenic
AGTGCTTGTGGTGGTATTAA+GGG 0.402709 6_4:+3740345 Msa0971690:CDS
TGCAATCCAAAGGGACCTTA+AGG 0.415409 6_4:+3737234 Msa0971690:five_prime_UTR
AGGGAAGTTAGAAGTGGAAG+AGG 0.416201 6_4:-3737563 None:intergenic
CAGGCAAAATATGCTGGAAC+TGG 0.423684 6_4:+3740150 Msa0971690:intron
CCCATTTGTAAGAGAGGGAT+TGG 0.424854 6_4:+3741489 Msa0971690:CDS
AAGATGTGGTCATTGATATA+TGG 0.428062 6_4:-3741623 None:intergenic
TTTAGATGAGGTTTGAATGT+TGG 0.429780 6_4:-3737284 None:intergenic
TTAAGAGATGCAGAAACAAT+AGG 0.430244 6_4:-3737529 None:intergenic
ATGTCTACCTCTTCCATAAA+CGG 0.431358 6_4:+3737448 Msa0971690:CDS
TTGGAACAAACCTGGTCATA+TGG 0.439425 6_4:-3739875 None:intergenic
TGATGTGTTCCATGACCAAT+TGG 0.448562 6_4:-3737383 None:intergenic
TTACAAATGGGTAGGTAAGA+AGG 0.452913 6_4:-3741477 None:intergenic
CTCTCTGAGGCTTCAGATGT+TGG 0.455326 6_4:-3739185 None:intergenic
GAAGCTGTGAATGTTTCTCT+TGG 0.456813 6_4:+3741451 Msa0971690:CDS
GTGTCCAACATTGTGGTCAT+TGG 0.457818 6_4:+3740318 Msa0971690:CDS
TTGAGAAAACATAGAACAAA+AGG 0.462943 6_4:+3737195 Msa0971690:five_prime_UTR
CCACAAAAGCTTCACCTGGC+TGG 0.464147 6_4:-3739826 None:intergenic
GTGGAGTAGGCTCCATCAAA+TGG 0.464977 6_4:-3740381 None:intergenic
GCCTCAGAGAGGATCAAAAC+TGG 0.471392 6_4:+3739197 Msa0971690:CDS
ACCAAAACTGGGGTGATGAT+AGG 0.472900 6_4:-3737628 None:intergenic
AAGAGAGAAGAAATGGGAAA+GGG 0.478534 6_4:+3738767 Msa0971690:intron
AGAGAATGACCATAACCTTA+AGG 0.482720 6_4:-3737249 None:intergenic
TTCTCCATAAGCTAGCAAAC+TGG 0.482838 6_4:+3742161 Msa0971690:three_prime_UTR
AGCAAGAATCCAGCTTTGTA+TGG 0.484367 6_4:+3739348 Msa0971690:intron
ACTAAAGCCGTTTATGGAAG+AGG 0.493880 6_4:-3737455 None:intergenic
CAAAATTGGTTTACCTGCAA+AGG 0.494116 6_4:+3740856 Msa0971690:CDS
CCAATCCCTCTCTTACAAAT+GGG 0.494348 6_4:-3741489 None:intergenic
TTAAAATGGGGATACCCAAT+TGG 0.496847 6_4:+3737368 Msa0971690:five_prime_UTR
TAGGGAGAAGACTGAATTGA+AGG 0.501912 6_4:+3739094 Msa0971690:intron
ACCTACCCATTTGTAAGAGA+GGG 0.502157 6_4:+3741484 Msa0971690:CDS
ATTTCTCTTTCTTGAAGTGA+AGG 0.503283 6_4:-3739223 None:intergenic
GCTAGTTCACCATACAAAGC+TGG 0.504395 6_4:-3739357 None:intergenic
TTGTAACAGGCAAAATATGC+TGG 0.509487 6_4:+3740144 Msa0971690:intron
GGTGATGATAGGAGAAGAAG+AGG 0.514997 6_4:-3737617 None:intergenic
TAAGAGAGAAGAAATGGGAA+AGG 0.517223 6_4:+3738766 Msa0971690:intron
GTGCTTGTGGTGGTATTAAG+GGG 0.524502 6_4:+3740346 Msa0971690:CDS
CATGTGCTAGATTTCCAGCC+AGG 0.532787 6_4:+3739812 Msa0971690:CDS
ATATATGGTTGATGTTCATA+CGG 0.533962 6_4:-3741608 None:intergenic
TGGAAATCTAGCACATGAGA+TGG 0.535400 6_4:-3739806 None:intergenic
CTGACCACAAAAGCTTCACC+TGG 0.540212 6_4:-3739830 None:intergenic
TATATGAGACACTATGAACT+TGG 0.542115 6_4:+3741994 Msa0971690:three_prime_UTR
GTCATTGGACACAGTGCTTG+TGG 0.548047 6_4:+3740333 Msa0971690:CDS
ACCTGCAAAGGCAAAGGTGA+AGG 0.548551 6_4:+3740868 Msa0971690:CDS
TGGTTTACCTGCAAAGGCAA+AGG 0.549043 6_4:+3740862 Msa0971690:CDS
TACCTACCCATTTGTAAGAG+AGG 0.549375 6_4:+3741483 Msa0971690:CDS
TGAAAACGAAAGTTAAGCTA+AGG 0.549996 6_4:-3737326 None:intergenic
AAGAGAAGGGAAGTTAGAAG+TGG 0.550503 6_4:-3737569 None:intergenic
GTATGCTGTTCTTCATCTCA+AGG 0.550648 6_4:+3740185 Msa0971690:CDS
CAGTGATTTCATTGAGGAGT+GGG 0.552604 6_4:+3740832 Msa0971690:intron
CATGGTTCCACCATATGACC+AGG 0.558972 6_4:+3739865 Msa0971690:CDS
GCAAAGGTGAAGGCAAAACA+TGG 0.559880 6_4:+3740878 Msa0971690:CDS
TGGGGATACCCAATTGGTCA+TGG 0.564321 6_4:+3737374 Msa0971690:five_prime_UTR
ATACGGAGAAAGTTGAAGAA+AGG 0.569824 6_4:-3741591 None:intergenic
CAAGAACAATGCAATCCAAA+GGG 0.571167 6_4:+3737225 Msa0971690:five_prime_UTR
GGAACAACAGCATCAGCTGA+TGG 0.577121 6_4:+3739158 Msa0971690:CDS
GTTTGTCTTGAATAAGAGAA+GGG 0.577564 6_4:-3737582 None:intergenic
TTGCTAGCTTATGGAGAACA+AGG 0.584211 6_4:-3742156 None:intergenic
GGTCAGAAATGTTGCTAACA+TGG 0.584570 6_4:+3739847 Msa0971690:CDS
GGAAATCTAGCACATGAGAT+GGG 0.585270 6_4:-3739805 None:intergenic
CCTATAGGTGTCCAACATTG+TGG 0.589585 6_4:+3740311 Msa0971690:intron
GGTTTGTCTTGAATAAGAGA+AGG 0.590039 6_4:-3737583 None:intergenic
GCAGTGATTTCATTGAGGAG+TGG 0.590746 6_4:+3740831 Msa0971690:intron
ATGAAGAACAGCATACTCAA+TGG 0.592490 6_4:-3740178 None:intergenic
ATAAGATGATCGATTTGTGA+AGG 0.594046 6_4:+3737168 None:intergenic
ATGTGGCCACGGTTCTACAT+TGG 0.595438 6_4:+3741894 Msa0971690:three_prime_UTR
CCTTTGGTTACATTAAAATG+GGG 0.596627 6_4:+3737356 Msa0971690:five_prime_UTR
TGTGTGCATAGCTCTCCAAA+AGG 0.602700 6_4:-3740908 None:intergenic
GGATACTATGACTTTGTGAA+AGG 0.603419 6_4:+3741538 Msa0971690:CDS
GATGTGTTCCATGACCAATT+GGG 0.610561 6_4:-3737382 None:intergenic
ACAAGAACAATGCAATCCAA+AGG 0.612564 6_4:+3737224 Msa0971690:five_prime_UTR
GAGCAAATTACAGCTCAGCT+AGG 0.613484 6_4:+3739137 Msa0971690:CDS
GTGTCCAATGACCACAATGT+TGG 0.616398 6_4:-3740322 None:intergenic
GAACAAACCTGGTCATATGG+TGG 0.621340 6_4:-3739872 None:intergenic
TTAGGTAAAAGATGTGGCCA+CGG 0.621466 6_4:+3741883 Msa0971690:intron
GTCGTGTGTCTGCAATGAAG+AGG 0.622417 6_4:+3741940 Msa0971690:three_prime_UTR
TTAGTGTATATACCAAAACT+GGG 0.627773 6_4:-3737639 None:intergenic
GGGATTGGTGAACAAAACAT+TGG 0.629368 6_4:+3741504 Msa0971690:CDS
GCTATGCACACACTGTGAGA+AGG 0.643279 6_4:+3740919 Msa0971690:CDS
TCCCTCTCTTACAAATGGGT+AGG 0.644241 6_4:-3741485 None:intergenic
ATACTTAGGTAATCAAGATG+TGG 0.649188 6_4:-3741637 None:intergenic
AAAACATTGGCACTAAAAGG+AGG 0.653225 6_4:+3741517 Msa0971690:CDS
ATAGTCATTGCATACCGGGG+GGG 0.655182 6_4:-3739391 None:intergenic
TTGTATGGTGAACTAGCCAA+AGG 0.656155 6_4:+3739363 Msa0971690:CDS
ATTGGACACAGTGCTTGTGG+TGG 0.669101 6_4:+3740336 Msa0971690:CDS
AATGGGAAAGGGCTATGATG+AGG 0.670505 6_4:+3738778 Msa0971690:CDS
TGTGTGCAGTGATTTCATTG+AGG 0.680762 6_4:+3740826 Msa0971690:intron
CAACATCTGAAGCCTCAGAG+AGG 0.708925 6_4:+3739186 Msa0971690:CDS
TGTTTGTTAGGTAAAAGATG+TGG 0.720567 6_4:+3741877 Msa0971690:intron
TAGTGTATATACCAAAACTG+GGG 0.721851 6_4:-3737638 None:intergenic
TAGCTTCCAATGTAGAACCG+TGG 0.724891 6_4:-3741900 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTAATATATAGTTTTAATTT+TGG - chr6_4:3738355-3738374 None:intergenic 10.0%
!! CAAAATTAAAACTATATATT+AGG + chr6_4:3738353-3738372 Msa0971690:intron 10.0%
!! TAGTATAATATTTCAAATAT+AGG + chr6_4:3739075-3739094 Msa0971690:intron 10.0%
!! AGTATAATATTTCAAATATA+GGG + chr6_4:3739076-3739095 Msa0971690:intron 10.0%
!! AAAGATATAAGTAATTATAA+AGG - chr6_4:3739280-3739299 None:intergenic 10.0%
!!! AATTTTACTATTGAATATTT+TGG + chr6_4:3740564-3740583 Msa0971690:intron 10.0%
!!! ATTTTACTATTGAATATTTT+GGG + chr6_4:3740565-3740584 Msa0971690:intron 10.0%
!!! TATTAGTCTTAATTTTTTAT+AGG + chr6_4:3741298-3741317 Msa0971690:intron 10.0%
!! AAAGTAACATTATTATAATT+TGG - chr6_4:3741782-3741801 None:intergenic 10.0%
!!! AACTTTTTTAATAGAAGTTT+TGG - chr6_4:3737500-3737519 None:intergenic 15.0%
!!! AAGAAAAATTTAGAGTTAAA+TGG + chr6_4:3737787-3737806 Msa0971690:intron 15.0%
!!! AAAAAATTTGGTTAGTTATA+TGG - chr6_4:3738311-3738330 None:intergenic 15.0%
!! AGTAAATAAATAGTACTATA+AGG - chr6_4:3738568-3738587 None:intergenic 15.0%
!! TATAGTACTATTTATTTACT+TGG + chr6_4:3738568-3738587 Msa0971690:intron 15.0%
!!! TAATGAAATTTTAGTCTTTA+GGG - chr6_4:3738644-3738663 None:intergenic 15.0%
!!! TTAATGAAATTTTAGTCTTT+AGG - chr6_4:3738645-3738664 None:intergenic 15.0%
!!! AAATAATGAAAAGTGATTTT+TGG - chr6_4:3738685-3738704 None:intergenic 15.0%
!!! ACTTTTCATTATTTCTTTTT+AGG + chr6_4:3738691-3738710 Msa0971690:intron 15.0%
!! ATTATTGACCAAATATAAAT+CGG + chr6_4:3739488-3739507 Msa0971690:intron 15.0%
!! GTTAAAATCAAAATATTTGT+AGG - chr6_4:3739581-3739600 None:intergenic 15.0%
!!! AACATACATATATTTCATTT+TGG + chr6_4:3740017-3740036 Msa0971690:intron 15.0%
!! ATACAAATTATACTCAAAAA+AGG + chr6_4:3740090-3740109 Msa0971690:intron 15.0%
!! TGATTCTAATTATTAAATGT+TGG - chr6_4:3740515-3740534 None:intergenic 15.0%
!! ATAATATGATGAAAGTTTAT+AGG - chr6_4:3741966-3741985 None:intergenic 15.0%
!!! TTTTAATAGAAGTTTTGGTA+GGG - chr6_4:3737495-3737514 None:intergenic 20.0%
!!! TTTTTAATAGAAGTTTTGGT+AGG - chr6_4:3737496-3737515 None:intergenic 20.0%
!! ATATGTATATGTATATGTCA+TGG + chr6_4:3737884-3737903 Msa0971690:intron 20.0%
!!! TAATTCCTTTTCTCAATAAT+AGG - chr6_4:3738035-3738054 None:intergenic 20.0%
!!! AAAAGTACAGATAGAATTTT+GGG - chr6_4:3738133-3738152 None:intergenic 20.0%
!! TCTTTAGCAATCTATTAAAT+TGG + chr6_4:3738211-3738230 Msa0971690:intron 20.0%
!! TTAAATTGGTAAGTTTAGTT+AGG + chr6_4:3738225-3738244 Msa0971690:intron 20.0%
!!! TAGAAAAAACTAGTTTTGAA+TGG - chr6_4:3738475-3738494 None:intergenic 20.0%
!!! ATATTTTAAGAGAGAAGAAA+TGG + chr6_4:3738760-3738779 Msa0971690:intron 20.0%
!!! TATTTTAAGAGAGAAGAAAT+GGG + chr6_4:3738761-3738780 Msa0971690:intron 20.0%
!! TATATAATTCTAATAGGAGA+AGG - chr6_4:3738846-3738865 None:intergenic 20.0%
!! AAATAATTATCATCGATGTT+AGG - chr6_4:3738949-3738968 None:intergenic 20.0%
!! AAAGAAAACAATGAAAAGTT+AGG - chr6_4:3739744-3739763 None:intergenic 20.0%
!! AAAAGATGCATTTGTATAAT+TGG - chr6_4:3739897-3739916 None:intergenic 20.0%
!!! ATATATGCTTAATTTGTAAC+AGG + chr6_4:3740131-3740150 Msa0971690:intron 20.0%
!! TAGGAAGAAAAAAAATTGTT+GGG - chr6_4:3740295-3740314 None:intergenic 20.0%
!! ATAGGAAGAAAAAAAATTGT+TGG - chr6_4:3740296-3740315 None:intergenic 20.0%
!!! ACAATTTTTTTTCTTCCTAT+AGG + chr6_4:3740296-3740315 Msa0971690:intron 20.0%
!! TTGGTCTAAATAATTAAAAG+TGG - chr6_4:3740496-3740515 None:intergenic 20.0%
!! TTTATCAGTTGAAATTCAAA+TGG + chr6_4:3741056-3741075 Msa0971690:intron 20.0%
!! TGATAATATTGACATTTATC+TGG - chr6_4:3741189-3741208 None:intergenic 20.0%
!!! TTATAAAAAATAAAGGGTGT+TGG - chr6_4:3741229-3741248 None:intergenic 20.0%
!! TATAAAAGTAAATGCTCAAA+AGG + chr6_4:3741244-3741263 Msa0971690:intron 20.0%
!! ATAAAAGTAAATGCTCAAAA+GGG + chr6_4:3741245-3741264 Msa0971690:intron 20.0%
!! TTAAAATTTGAATTATGTGC+AGG + chr6_4:3741429-3741448 Msa0971690:intron 20.0%
!! AGCTCATAATTAATTAACAA+GGG - chr6_4:3741694-3741713 None:intergenic 20.0%
!! TAGCTCATAATTAATTAACA+AGG - chr6_4:3741695-3741714 None:intergenic 20.0%
!!! CCATCTACATTTATTTATTT+TGG - chr6_4:3741722-3741741 None:intergenic 20.0%
!! CCAAAATAAATAAATGTAGA+TGG + chr6_4:3741719-3741738 Msa0971690:intron 20.0%
!! AACAAACAACAAAAATTTAG+TGG - chr6_4:3741865-3741884 None:intergenic 20.0%
!!! CTAAATTTTTGTTGTTTGTT+AGG + chr6_4:3741865-3741884 Msa0971690:intron 20.0%
!! TATCATCTTAAATAAGAGTT+TGG + chr6_4:3742046-3742065 Msa0971690:three_prime_UTR 20.0%
!!! GAAGCAAAATTTTCAATATA+TGG + chr6_4:3742079-3742098 Msa0971690:three_prime_UTR 20.0%
! TTGAGAAAACATAGAACAAA+AGG + chr6_4:3737195-3737214 Msa0971690:five_prime_UTR 25.0%
! TACCTTTGGTTACATTAAAA+TGG + chr6_4:3737354-3737373 Msa0971690:five_prime_UTR 25.0%
! ACCTTTGGTTACATTAAAAT+GGG + chr6_4:3737355-3737374 Msa0971690:five_prime_UTR 25.0%
!!! TTTAATAGAAGTTTTGGTAG+GGG - chr6_4:3737494-3737513 None:intergenic 25.0%
! TTAGTGTATATACCAAAACT+GGG - chr6_4:3737642-3737661 None:intergenic 25.0%
! TTTAGTGTATATACCAAAAC+TGG - chr6_4:3737643-3737662 None:intergenic 25.0%
! ATTCTTCTAATGTCATGTAT+TGG + chr6_4:3737705-3737724 Msa0971690:intron 25.0%
!!! ATATGTCATGGCATTTTTTA+AGG + chr6_4:3737896-3737915 Msa0971690:intron 25.0%
! AAGTACCTATTATTGAGAAA+AGG + chr6_4:3738027-3738046 Msa0971690:intron 25.0%
!!! CAAAAGTACAGATAGAATTT+TGG - chr6_4:3738134-3738153 None:intergenic 25.0%
!! CAAAATTCTATCTGTACTTT+TGG + chr6_4:3738132-3738151 Msa0971690:intron 25.0%
!!! TAGGTGAATTTGTTTTGTAT+AGG + chr6_4:3738372-3738391 Msa0971690:intron 25.0%
!!! AGGTGAATTTGTTTTGTATA+GGG + chr6_4:3738373-3738392 Msa0971690:intron 25.0%
! ACACATTACTATAGAAGAAA+AGG + chr6_4:3738448-3738467 Msa0971690:intron 25.0%
!!! TATACTTAATTTTTGGTGTG+TGG - chr6_4:3738518-3738537 None:intergenic 25.0%
!! GACATGGTATACTTAATTTT+TGG - chr6_4:3738525-3738544 None:intergenic 25.0%
! TAGGGTACATATGAAAAATA+TGG - chr6_4:3738626-3738645 None:intergenic 25.0%
!! AGATTTACCTCAACAATTTT+TGG - chr6_4:3738817-3738836 None:intergenic 25.0%
! AATAAATAGTCATTGCATAC+CGG - chr6_4:3739399-3739418 None:intergenic 25.0%
! ATATTTGGTCAATAATTTCG+AGG - chr6_4:3739484-3739503 None:intergenic 25.0%
!! TTTAGAGACCGATTTATATT+TGG - chr6_4:3739499-3739518 None:intergenic 25.0%
! ATATAAATCGGTCTCTAAAT+CGG + chr6_4:3739500-3739519 Msa0971690:intron 25.0%
! TCCAATCAAATAAAATCTCA+TGG + chr6_4:3739553-3739572 Msa0971690:intron 25.0%
!!! ACCATGAGATTTTATTTGAT+TGG - chr6_4:3739557-3739576 None:intergenic 25.0%
! TGAAAACCAATATGATGTTA+TGG + chr6_4:3739611-3739630 Msa0971690:intron 25.0%
!! TGTTTTCTTTTTCCAGTTTA+TGG + chr6_4:3739754-3739773 Msa0971690:intron 25.0%
!!! CATCTTTTTTGACTTGTATA+TGG + chr6_4:3739909-3739928 Msa0971690:intron 25.0%
! ACTTCAGATTGAATATATGT+CGG - chr6_4:3740046-3740065 None:intergenic 25.0%
!! ATATATTCAATCTGAAGTGT+CGG + chr6_4:3740048-3740067 Msa0971690:intron 25.0%
! GAAAAAAAAAATGACTTACG+TGG - chr6_4:3740403-3740422 None:intergenic 25.0%
! TCTACTTATACTTAGATTGA+TGG - chr6_4:3740715-3740734 None:intergenic 25.0%
! GTGAACTATAAGACAAATAT+TGG - chr6_4:3740998-3741017 None:intergenic 25.0%
!! ATATATGGTTGATGTTCATA+CGG - chr6_4:3741611-3741630 None:intergenic 25.0%
!! AGCTTTGTATAAATGATTGA+TGG - chr6_4:3741759-3741778 None:intergenic 25.0%
!! TGAGAGAAAAGTGTAATTTA+TGG + chr6_4:3741826-3741845 Msa0971690:intron 25.0%
! AGAAAAAAGAATACTTTCGT+AGG - chr6_4:3742121-3742140 None:intergenic 25.0%
TTTAGATGAGGTTTGAATGT+TGG - chr6_4:3737287-3737306 None:intergenic 30.0%
CAAACCTCATCTAAAAAGAT+AGG + chr6_4:3737292-3737311 Msa0971690:five_prime_UTR 30.0%
! CATTCCTATCTTTTTAGATG+AGG - chr6_4:3737299-3737318 None:intergenic 30.0%
TGAAAACGAAAGTTAAGCTA+AGG - chr6_4:3737329-3737348 None:intergenic 30.0%
! TCGTTTTCATTATCTACCTT+TGG + chr6_4:3737340-3737359 Msa0971690:five_prime_UTR 30.0%
CCTTTGGTTACATTAAAATG+GGG + chr6_4:3737356-3737375 Msa0971690:five_prime_UTR 30.0%
TTAAGAGATGCAGAAACAAT+AGG - chr6_4:3737532-3737551 None:intergenic 30.0%
GTTTGTCTTGAATAAGAGAA+GGG - chr6_4:3737585-3737604 None:intergenic 30.0%
TAGTGTATATACCAAAACTG+GGG - chr6_4:3737641-3737660 None:intergenic 30.0%
ACACTAAAACTAATGCACTT+TGG + chr6_4:3737655-3737674 Msa0971690:intron 30.0%
TGTTTGATTCTTCGATAAAG+TGG + chr6_4:3737850-3737869 Msa0971690:intron 30.0%
GTTTGATTCTTCGATAAAGT+GGG + chr6_4:3737851-3737870 Msa0971690:intron 30.0%
TGACATAATAGTGAGTCTAT+TGG + chr6_4:3737939-3737958 Msa0971690:intron 30.0%
AAGACAAAGATTTGCCATTA+GGG - chr6_4:3737989-3738008 None:intergenic 30.0%
AAAGACAAAGATTTGCCATT+AGG - chr6_4:3737990-3738009 None:intergenic 30.0%
GGTACTTAGCTATATACATT+TGG - chr6_4:3738014-3738033 None:intergenic 30.0%
! TCTAAAGTATAGTATTCACG+TGG + chr6_4:3738172-3738191 Msa0971690:intron 30.0%
GTAAGTTTAGTTAGGTTTGA+GGG + chr6_4:3738233-3738252 Msa0971690:intron 30.0%
!!! GGTGAATTTGTTTTGTATAG+GGG + chr6_4:3738374-3738393 Msa0971690:intron 30.0%
AGAAAAGTTCAAATTGGACA+TGG - chr6_4:3738541-3738560 None:intergenic 30.0%
GGTCTAAGAAAAGTTCAAAT+TGG - chr6_4:3738547-3738566 None:intergenic 30.0%
TGACAATTACGAACAATTGA+CGG - chr6_4:3738912-3738931 None:intergenic 30.0%
! TCTAAAGTCACGTATATGAT+TGG + chr6_4:3738968-3738987 Msa0971690:intron 30.0%
ATTTCTCTTTCTTGAAGTGA+AGG - chr6_4:3739226-3739245 None:intergenic 30.0%
ATAAATAGTCATTGCATACC+GGG - chr6_4:3739398-3739417 None:intergenic 30.0%
CTCTAACCATAACATCATAT+TGG - chr6_4:3739620-3739639 None:intergenic 30.0%
! TGGTTAGAGTGAAATTTGTT+TGG + chr6_4:3739631-3739650 Msa0971690:intron 30.0%
TTGTATAATTGGAACAAACC+TGG - chr6_4:3739886-3739905 None:intergenic 30.0%
ATACTGATAAATGTACACTG+CGG + chr6_4:3739961-3739980 Msa0971690:intron 30.0%
! CTTTTGTCTTTTCCATTTGA+TGG + chr6_4:3740369-3740388 Msa0971690:CDS 30.0%
AGAAAAGTTAGTGTAGGTAA+AGG - chr6_4:3740425-3740444 None:intergenic 30.0%
TTAGTGTATGACTGGATTAA+CGG + chr6_4:3740601-3740620 Msa0971690:intron 30.0%
GTTCAACCAATTTAATGTCT+AGG + chr6_4:3740757-3740776 Msa0971690:intron 30.0%
TCACTTCCTAGACATTAAAT+TGG - chr6_4:3740766-3740785 None:intergenic 30.0%
ACTGCACACAACAAAATAAA+GGG - chr6_4:3740816-3740835 None:intergenic 30.0%
TGGATTTCACGAAATTTATG+TGG + chr6_4:3741076-3741095 Msa0971690:intron 30.0%
TAGCGATGATAAACAATGAT+TGG + chr6_4:3741376-3741395 Msa0971690:intron 30.0%
AACAAAACATTGGCACTAAA+AGG + chr6_4:3741514-3741533 Msa0971690:CDS 30.0%
AAGATGTGGTCATTGATATA+TGG - chr6_4:3741626-3741645 None:intergenic 30.0%
ATACTTAGGTAATCAAGATG+TGG - chr6_4:3741640-3741659 None:intergenic 30.0%
! TGTTTGTTAGGTAAAAGATG+TGG + chr6_4:3741877-3741896 Msa0971690:intron 30.0%
AGCTATAATCTCATGCTTAA+AGG + chr6_4:3741918-3741937 Msa0971690:three_prime_UTR 30.0%
TATATGAGACACTATGAACT+TGG + chr6_4:3741994-3742013 Msa0971690:three_prime_UTR 30.0%
ACAAGAACAATGCAATCCAA+AGG + chr6_4:3737224-3737243 Msa0971690:five_prime_UTR 35.0%
CAAGAACAATGCAATCCAAA+GGG + chr6_4:3737225-3737244 Msa0971690:five_prime_UTR 35.0%
AGAGAATGACCATAACCTTA+AGG - chr6_4:3737252-3737271 None:intergenic 35.0%
!! CCCCATTTTAATGTAACCAA+AGG - chr6_4:3737359-3737378 None:intergenic 35.0%
TTAAAATGGGGATACCCAAT+TGG + chr6_4:3737368-3737387 Msa0971690:five_prime_UTR 35.0%
ATGTCTACCTCTTCCATAAA+CGG + chr6_4:3737448-3737467 Msa0971690:CDS 35.0%
GGTTTGTCTTGAATAAGAGA+AGG - chr6_4:3737586-3737605 None:intergenic 35.0%
CATAGTCGTACAAATGAACA+AGG - chr6_4:3737763-3737782 None:intergenic 35.0%
!!! GTCTATTGGTTTTGTGTCTT+TGG + chr6_4:3737953-3737972 Msa0971690:intron 35.0%
!! GGTTTTGTGTCTTTGGTTAT+TGG + chr6_4:3737960-3737979 Msa0971690:intron 35.0%
AGACAAAGATTTGCCATTAG+GGG - chr6_4:3737988-3738007 None:intergenic 35.0%
GGTAAGTTTAGTTAGGTTTG+AGG + chr6_4:3738232-3738251 Msa0971690:intron 35.0%
! TTTGGTTAGTTATATGGTGC+TGG - chr6_4:3738305-3738324 None:intergenic 35.0%
TAACTAATCACACACTTCTC+TGG - chr6_4:3738401-3738420 None:intergenic 35.0%
TAAGAGAGAAGAAATGGGAA+AGG + chr6_4:3738766-3738785 Msa0971690:intron 35.0%
AAGAGAGAAGAAATGGGAAA+GGG + chr6_4:3738767-3738786 Msa0971690:intron 35.0%
AAGAGCTCCAAAAATTGTTG+AGG + chr6_4:3738807-3738826 Msa0971690:CDS 35.0%
TAAATAGTCATTGCATACCG+GGG - chr6_4:3739397-3739416 None:intergenic 35.0%
TTGTAACAGGCAAAATATGC+TGG + chr6_4:3740144-3740163 Msa0971690:intron 35.0%
ATGAAGAACAGCATACTCAA+TGG - chr6_4:3740181-3740200 None:intergenic 35.0%
AAAAATGACTTACGTGGAGT+AGG - chr6_4:3740397-3740416 None:intergenic 35.0%
CCAGTCATACACTAAATAGA+GGG - chr6_4:3740596-3740615 None:intergenic 35.0%
TCCAGTCATACACTAAATAG+AGG - chr6_4:3740597-3740616 None:intergenic 35.0%
CACTGCACACAACAAAATAA+AGG - chr6_4:3740817-3740836 None:intergenic 35.0%
! CAAAATTGGTTTACCTGCAA+AGG + chr6_4:3740856-3740875 Msa0971690:CDS 35.0%
TTACAAATGGGTAGGTAAGA+AGG - chr6_4:3741480-3741499 None:intergenic 35.0%
AAAACATTGGCACTAAAAGG+AGG + chr6_4:3741517-3741536 Msa0971690:CDS 35.0%
GGATACTATGACTTTGTGAA+AGG + chr6_4:3741538-3741557 Msa0971690:CDS 35.0%
! TGAAAGGATCTTTTGAGCTT+TGG + chr6_4:3741554-3741573 Msa0971690:CDS 35.0%
! GAAAGGATCTTTTGAGCTTT+GGG + chr6_4:3741555-3741574 Msa0971690:CDS 35.0%
! AAAGGATCTTTTGAGCTTTG+GGG + chr6_4:3741556-3741575 Msa0971690:CDS 35.0%
ATACGGAGAAAGTTGAAGAA+AGG - chr6_4:3741594-3741613 None:intergenic 35.0%
CTTATGGAGAACAAGGAAAA+TGG - chr6_4:3742152-3742171 None:intergenic 35.0%
TAGCAAACTGGCAGATTATT+TGG + chr6_4:3742173-3742192 Msa0971690:three_prime_UTR 35.0%
AGCAAACTGGCAGATTATTT+GGG + chr6_4:3742174-3742193 Msa0971690:three_prime_UTR 35.0%
GATGTGTTCCATGACCAATT+GGG - chr6_4:3737385-3737404 None:intergenic 40.0%
TGATGTGTTCCATGACCAAT+TGG - chr6_4:3737386-3737405 None:intergenic 40.0%
ACTAAAGCCGTTTATGGAAG+AGG - chr6_4:3737458-3737477 None:intergenic 40.0%
AGAGAGACTAAAGCCGTTTA+TGG - chr6_4:3737464-3737483 None:intergenic 40.0%
AAGAGAAGGGAAGTTAGAAG+TGG - chr6_4:3737572-3737591 None:intergenic 40.0%
GAAGAAGAGGAAGCAAAAAC+AGG - chr6_4:3737607-3737626 None:intergenic 40.0%
GACAAAGATTTGCCATTAGG+GGG - chr6_4:3737987-3738006 None:intergenic 40.0%
!! GTTAGTTATATGGTGCTGGT+TGG - chr6_4:3738301-3738320 None:intergenic 40.0%
TAGGGAGAAGACTGAATTGA+AGG + chr6_4:3739094-3739113 Msa0971690:intron 40.0%
! AGCAAGAATCCAGCTTTGTA+TGG + chr6_4:3739348-3739367 Msa0971690:intron 40.0%
TTGTATGGTGAACTAGCCAA+AGG + chr6_4:3739363-3739382 Msa0971690:CDS 40.0%
AAATAGTCATTGCATACCGG+GGG - chr6_4:3739396-3739415 None:intergenic 40.0%
AGCATGCAAAGACCATAAAC+TGG - chr6_4:3739769-3739788 None:intergenic 40.0%
GGAAATCTAGCACATGAGAT+GGG - chr6_4:3739808-3739827 None:intergenic 40.0%
TGGAAATCTAGCACATGAGA+TGG - chr6_4:3739809-3739828 None:intergenic 40.0%
GGTCAGAAATGTTGCTAACA+TGG + chr6_4:3739847-3739866 Msa0971690:CDS 40.0%
TTGGAACAAACCTGGTCATA+TGG - chr6_4:3739878-3739897 None:intergenic 40.0%
GTATGCTGTTCTTCATCTCA+AGG + chr6_4:3740185-3740204 Msa0971690:CDS 40.0%
AGTGCTTGTGGTGGTATTAA+GGG + chr6_4:3740345-3740364 Msa0971690:CDS 40.0%
GGCACTAGAAAAGTTAGTGT+AGG - chr6_4:3740431-3740450 None:intergenic 40.0%
!! TTTTCTAGTGCCACCTCTTA+TGG + chr6_4:3740439-3740458 Msa0971690:intron 40.0%
ATCCTTCCAAGTTCCATAAG+AGG - chr6_4:3740455-3740474 None:intergenic 40.0%
CCCTCTATTTAGTGTATGAC+TGG + chr6_4:3740593-3740612 Msa0971690:intron 40.0%
AACGGTGACTTTGACAGAAT+TGG + chr6_4:3740619-3740638 Msa0971690:intron 40.0%
ACGGTGACTTTGACAGAATT+GGG + chr6_4:3740620-3740639 Msa0971690:intron 40.0%
!! ACTTAGATTGATGGTGACTG+TGG - chr6_4:3740706-3740725 None:intergenic 40.0%
TGTGTGCAGTGATTTCATTG+AGG + chr6_4:3740826-3740845 Msa0971690:intron 40.0%
CAGTGATTTCATTGAGGAGT+GGG + chr6_4:3740832-3740851 Msa0971690:intron 40.0%
ATTGAGGAGTGGGTCAAAAT+TGG + chr6_4:3740842-3740861 Msa0971690:CDS 40.0%
! AAACATGGAGATGCACCTTT+TGG + chr6_4:3740893-3740912 Msa0971690:CDS 40.0%
GAAGCTGTGAATGTTTCTCT+TGG + chr6_4:3741451-3741470 Msa0971690:CDS 40.0%
TACCTACCCATTTGTAAGAG+AGG + chr6_4:3741483-3741502 Msa0971690:CDS 40.0%
ACCTACCCATTTGTAAGAGA+GGG + chr6_4:3741484-3741503 Msa0971690:CDS 40.0%
CCAATCCCTCTCTTACAAAT+GGG - chr6_4:3741492-3741511 None:intergenic 40.0%
ACCAATCCCTCTCTTACAAA+TGG - chr6_4:3741493-3741512 None:intergenic 40.0%
! GGGATTGGTGAACAAAACAT+TGG + chr6_4:3741504-3741523 Msa0971690:CDS 40.0%
TTAGGTAAAAGATGTGGCCA+CGG + chr6_4:3741883-3741902 Msa0971690:intron 40.0%
! TTGCTAGCTTATGGAGAACA+AGG - chr6_4:3742159-3742178 None:intergenic 40.0%
TTCTCCATAAGCTAGCAAAC+TGG + chr6_4:3742161-3742180 Msa0971690:three_prime_UTR 40.0%
TGCAATCCAAAGGGACCTTA+AGG + chr6_4:3737234-3737253 Msa0971690:five_prime_UTR 45.0%
CCATAACCTTAAGGTCCCTT+TGG - chr6_4:3737243-3737262 None:intergenic 45.0%
CCAAAGGGACCTTAAGGTTA+TGG + chr6_4:3737240-3737259 Msa0971690:five_prime_UTR 45.0%
AGGGAAGTTAGAAGTGGAAG+AGG - chr6_4:3737566-3737585 None:intergenic 45.0%
GGTGATGATAGGAGAAGAAG+AGG - chr6_4:3737620-3737639 None:intergenic 45.0%
! TCCTATCATCACCCCAGTTT+TGG + chr6_4:3737627-3737646 Msa0971690:CDS 45.0%
ACCAAAACTGGGGTGATGAT+AGG - chr6_4:3737631-3737650 None:intergenic 45.0%
TTGGTTATTGGTCCCCCTAA+TGG + chr6_4:3737972-3737991 Msa0971690:intron 45.0%
AGGTTTGAGGGACAAATGTG+TGG + chr6_4:3738245-3738264 Msa0971690:intron 45.0%
AATGGGAAAGGGCTATGATG+AGG + chr6_4:3738778-3738797 Msa0971690:CDS 45.0%
!!! CTCAACTTTTTCAGCTGCTG+TGG - chr6_4:3739120-3739139 None:intergenic 45.0%
GAGCAAATTACAGCTCAGCT+AGG + chr6_4:3739137-3739156 Msa0971690:CDS 45.0%
!! ACCAGTTTTGATCCTCTCTG+AGG - chr6_4:3739201-3739220 None:intergenic 45.0%
ACAAAGCTGGATTCTTGCTG+TGG - chr6_4:3739347-3739366 None:intergenic 45.0%
GCTAGTTCACCATACAAAGC+TGG - chr6_4:3739360-3739379 None:intergenic 45.0%
AATAGTCATTGCATACCGGG+GGG - chr6_4:3739395-3739414 None:intergenic 45.0%
GAACAAACCTGGTCATATGG+TGG - chr6_4:3739875-3739894 None:intergenic 45.0%
TATCGTGTCCGTGTTTGAGT+CGG - chr6_4:3739944-3739963 None:intergenic 45.0%
CAGGCAAAATATGCTGGAAC+TGG + chr6_4:3740150-3740169 Msa0971690:intron 45.0%
CCACAATGTTGGACACCTAT+AGG - chr6_4:3740314-3740333 None:intergenic 45.0%
CCTATAGGTGTCCAACATTG+TGG + chr6_4:3740311-3740330 Msa0971690:intron 45.0%
GTGTCCAACATTGTGGTCAT+TGG + chr6_4:3740318-3740337 Msa0971690:CDS 45.0%
GTGTCCAATGACCACAATGT+TGG - chr6_4:3740325-3740344 None:intergenic 45.0%
CAGTGCTTGTGGTGGTATTA+AGG + chr6_4:3740344-3740363 Msa0971690:CDS 45.0%
GTGCTTGTGGTGGTATTAAG+GGG + chr6_4:3740346-3740365 Msa0971690:CDS 45.0%
CTTCCAAGTTCCATAAGAGG+TGG - chr6_4:3740452-3740471 None:intergenic 45.0%
CACCTCTTATGGAACTTGGA+AGG + chr6_4:3740450-3740469 Msa0971690:intron 45.0%
CGGTGACTTTGACAGAATTG+GGG + chr6_4:3740621-3740640 Msa0971690:intron 45.0%
TGGTGACTGTGGAAGAATTG+CGG - chr6_4:3740695-3740714 None:intergenic 45.0%
GCAGTGATTTCATTGAGGAG+TGG + chr6_4:3740831-3740850 Msa0971690:intron 45.0%
TGGTTTACCTGCAAAGGCAA+AGG + chr6_4:3740862-3740881 Msa0971690:CDS 45.0%
GCAAAGGTGAAGGCAAAACA+TGG + chr6_4:3740878-3740897 Msa0971690:CDS 45.0%
TGTGTGCATAGCTCTCCAAA+AGG - chr6_4:3740911-3740930 None:intergenic 45.0%
! CAAGCATGTTGCTTGTGGAT+TGG - chr6_4:3740964-3740983 None:intergenic 45.0%
TCCACAAGCAACATGCTTGA+TGG + chr6_4:3740965-3740984 Msa0971690:intron 45.0%
! TCCATCAAGCATGTTGCTTG+TGG - chr6_4:3740969-3740988 None:intergenic 45.0%
TCCCTCTCTTACAAATGGGT+AGG - chr6_4:3741488-3741507 None:intergenic 45.0%
CCCATTTGTAAGAGAGGGAT+TGG + chr6_4:3741489-3741508 Msa0971690:CDS 45.0%
!! GAGCTTTGGGGACTTGAATT+TGG + chr6_4:3741568-3741587 Msa0971690:CDS 45.0%
TAGCTTCCAATGTAGAACCG+TGG - chr6_4:3741903-3741922 None:intergenic 45.0%
!! TCTGCCAGTTTGCTAGCTTA+TGG - chr6_4:3742168-3742187 None:intergenic 45.0%
!!! TTTTTTCTAATAAAAAAATT+TGG - chr6_4:3738323-3738342 None:intergenic 5.0%
!!! ATTTTTTATATAATTCTAAT+AGG - chr6_4:3738852-3738871 None:intergenic 5.0%
!!! TTACTTTTATAAAAAATAAA+GGG - chr6_4:3741235-3741254 None:intergenic 5.0%
!!! TTTACTTTTATAAAAAATAA+AGG - chr6_4:3741236-3741255 None:intergenic 5.0%
TGGGGATACCCAATTGGTCA+TGG + chr6_4:3737374-3737393 Msa0971690:five_prime_UTR 50.0%
GGAACAACAGCATCAGCTGA+TGG + chr6_4:3739158-3739177 Msa0971690:CDS 50.0%
!! CTCTCTGAGGCTTCAGATGT+TGG - chr6_4:3739188-3739207 None:intergenic 50.0%
! CAACATCTGAAGCCTCAGAG+AGG + chr6_4:3739186-3739205 Msa0971690:CDS 50.0%
GCCTCAGAGAGGATCAAAAC+TGG + chr6_4:3739197-3739216 Msa0971690:CDS 50.0%
ATAGTCATTGCATACCGGGG+GGG - chr6_4:3739394-3739413 None:intergenic 50.0%
CATGTGCTAGATTTCCAGCC+AGG + chr6_4:3739812-3739831 Msa0971690:CDS 50.0%
CTGACCACAAAAGCTTCACC+TGG - chr6_4:3739833-3739852 None:intergenic 50.0%
CATGGTTCCACCATATGACC+AGG + chr6_4:3739865-3739884 Msa0971690:CDS 50.0%
!! TGTCTCCACCGACTCAAACA+CGG + chr6_4:3739933-3739952 Msa0971690:intron 50.0%
GTCATTGGACACAGTGCTTG+TGG + chr6_4:3740333-3740352 Msa0971690:CDS 50.0%
ATTGGACACAGTGCTTGTGG+TGG + chr6_4:3740336-3740355 Msa0971690:CDS 50.0%
GTGGAGTAGGCTCCATCAAA+TGG - chr6_4:3740384-3740403 None:intergenic 50.0%
GTGCCACCTCTTATGGAACT+TGG + chr6_4:3740446-3740465 Msa0971690:intron 50.0%
ACCTGCAAAGGCAAAGGTGA+AGG + chr6_4:3740868-3740887 Msa0971690:CDS 50.0%
GCTATGCACACACTGTGAGA+AGG + chr6_4:3740919-3740938 Msa0971690:CDS 50.0%
ATGTGGCCACGGTTCTACAT+TGG + chr6_4:3741894-3741913 Msa0971690:three_prime_UTR 50.0%
GTCGTGTGTCTGCAATGAAG+AGG + chr6_4:3741940-3741959 Msa0971690:three_prime_UTR 50.0%
CCACAAAAGCTTCACCTGGC+TGG - chr6_4:3739829-3739848 None:intergenic 55.0%
! CCAGCCAGGTGAAGCTTTTG+TGG + chr6_4:3739826-3739845 Msa0971690:CDS 55.0%
GCCTTCACCTTTGCCTTTGC+AGG - chr6_4:3740872-3740891 None:intergenic 55.0%
CGTGTCCGTGTTTGAGTCGG+TGG - chr6_4:3739941-3739960 None:intergenic 60.0%
CATTGCATACCGGGGGGGCT+TGG - chr6_4:3739389-3739408 None:intergenic 65.0%
AGCCAAAGGCCAAGCCCCCC+CGG + chr6_4:3739377-3739396 Msa0971690:CDS 70.0%
! TACCGGGGGGGCTTGGCCTT+TGG - chr6_4:3739382-3739401 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 3737169 3742247 3737169 ID=Msa0971690;Name=Msa0971690
chr6_4 mRNA 3737169 3742247 3737169 ID=Msa0971690-mRNA-1;Parent=Msa0971690;Name=Msa0971690-mRNA-1;_AED=0.11;_eAED=0.11;_QI=279|1|1|1|0.88|0.8|10|420|329
chr6_4 exon 3737169 3737648 3737169 ID=Msa0971690-mRNA-1:exon:1635;Parent=Msa0971690-mRNA-1
chr6_4 exon 3738770 3738828 3738770 ID=Msa0971690-mRNA-1:exon:1636;Parent=Msa0971690-mRNA-1
chr6_4 exon 3739097 3739249 3739097 ID=Msa0971690-mRNA-1:exon:1637;Parent=Msa0971690-mRNA-1
chr6_4 exon 3739350 3739398 3739350 ID=Msa0971690-mRNA-1:exon:1638;Parent=Msa0971690-mRNA-1
chr6_4 exon 3739770 3739886 3739770 ID=Msa0971690-mRNA-1:exon:1639;Parent=Msa0971690-mRNA-1
chr6_4 exon 3740153 3740206 3740153 ID=Msa0971690-mRNA-1:exon:1640;Parent=Msa0971690-mRNA-1
chr6_4 exon 3740318 3740403 3740318 ID=Msa0971690-mRNA-1:exon:1641;Parent=Msa0971690-mRNA-1
chr6_4 exon 3740835 3740940 3740835 ID=Msa0971690-mRNA-1:exon:1642;Parent=Msa0971690-mRNA-1
chr6_4 exon 3741451 3741674 3741451 ID=Msa0971690-mRNA-1:exon:1643;Parent=Msa0971690-mRNA-1
chr6_4 exon 3741887 3742247 3741887 ID=Msa0971690-mRNA-1:exon:1644;Parent=Msa0971690-mRNA-1
chr6_4 five_prime_UTR 3737169 3737447 3737169 ID=Msa0971690-mRNA-1:five_prime_utr;Parent=Msa0971690-mRNA-1
chr6_4 CDS 3737448 3737648 3737448 ID=Msa0971690-mRNA-1:cds;Parent=Msa0971690-mRNA-1
chr6_4 CDS 3738770 3738828 3738770 ID=Msa0971690-mRNA-1:cds;Parent=Msa0971690-mRNA-1
chr6_4 CDS 3739097 3739249 3739097 ID=Msa0971690-mRNA-1:cds;Parent=Msa0971690-mRNA-1
chr6_4 CDS 3739350 3739398 3739350 ID=Msa0971690-mRNA-1:cds;Parent=Msa0971690-mRNA-1
chr6_4 CDS 3739770 3739886 3739770 ID=Msa0971690-mRNA-1:cds;Parent=Msa0971690-mRNA-1
chr6_4 CDS 3740153 3740206 3740153 ID=Msa0971690-mRNA-1:cds;Parent=Msa0971690-mRNA-1
chr6_4 CDS 3740318 3740403 3740318 ID=Msa0971690-mRNA-1:cds;Parent=Msa0971690-mRNA-1
chr6_4 CDS 3740835 3740940 3740835 ID=Msa0971690-mRNA-1:cds;Parent=Msa0971690-mRNA-1
chr6_4 CDS 3741451 3741615 3741451 ID=Msa0971690-mRNA-1:cds;Parent=Msa0971690-mRNA-1
chr6_4 three_prime_UTR 3741616 3741674 3741616 ID=Msa0971690-mRNA-1:three_prime_utr;Parent=Msa0971690-mRNA-1
chr6_4 three_prime_UTR 3741887 3742247 3741887 ID=Msa0971690-mRNA-1:three_prime_utr;Parent=Msa0971690-mRNA-1
Gene Sequence

>Msa0971690

ATGTCTACCTCTTCCATAAACGGCTTTAGTCTCTCTTCTTTGTCCCCTACCAAAACTTCTATTAAAAAAGTTACATTGAGACCTATTGTTTCTGCATCTCTTAACTCTTCTTCTTCCTCTTCCACTTCTAACTTCCCTTCTCTTATTCAAGACAAACCTGTTTTTGCTTCCTCTTCTTCTCCTATCATCACCCCAGTTTTGAGAGAAGAAATGGGAAAGGGCTATGATGAGGCTATTGAAGAGCTCCAAAAATTGTTGAGGGAGAAGACTGAATTGAAGGCCACAGCAGCTGAAAAAGTTGAGCAAATTACAGCTCAGCTAGGAACAACAGCATCAGCTGATGGTGTTCCAACATCTGAAGCCTCAGAGAGGATCAAAACTGGTTTCCTTCACTTCAAGAAAGAGAAATATGACAAGAATCCAGCTTTGTATGGTGAACTAGCCAAAGGCCAAGCCCCCCCGTTTATGGTCTTTGCATGCTCAGACTCTAGAGTCTGCCCATCTCATGTGCTAGATTTCCAGCCAGGTGAAGCTTTTGTGGTCAGAAATGTTGCTAACATGGTTCCACCATATGACCAGGCAAAATATGCTGGAACTGGATCTGCCATTGAGTATGCTGTTCTTCATCTCAAGGTGTCCAACATTGTGGTCATTGGACACAGTGCTTGTGGTGGTATTAAGGGGCTTTTGTCTTTTCCATTTGATGGAGCCTACTCCACTGATTTCATTGAGGAGTGGGTCAAAATTGGTTTACCTGCAAAGGCAAAGGTGAAGGCAAAACATGGAGATGCACCTTTTGGAGAGCTATGCACACACTGTGAGAAGGAAGCTGTGAATGTTTCTCTTGGAAACCTTCTTACCTACCCATTTGTAAGAGAGGGATTGGTGAACAAAACATTGGCACTAAAAGGAGGATACTATGACTTTGTGAAAGGATCTTTTGAGCTTTGGGGACTTGAATTTGGCCTTTCTTCAACTTTCTCCGTATGA

Protein sequence

>Msa0971690

MSTSSINGFSLSSLSPTKTSIKKVTLRPIVSASLNSSSSSSTSNFPSLIQDKPVFASSSSPIITPVLREEMGKGYDEAIEELQKLLREKTELKATAAEKVEQITAQLGTTASADGVPTSEASERIKTGFLHFKKEKYDKNPALYGELAKGQAPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANMVPPYDQAKYAGTGSAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGAYSTDFIEEWVKIGLPAKAKVKAKHGDAPFGELCTHCEKEAVNVSLGNLLTYPFVREGLVNKTLALKGGYYDFVKGSFELWGLEFGLSSTFSV*