AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0428270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0428270 MtrunA17_Chr3g0131541 95.755 212 9 0 1 212 1 212 1.07e-154 427
Msa0428270 MtrunA17_Chr3g0131551 76.606 218 43 3 1 212 7 222 3.88e-122 345
Msa0428270 MtrunA17_Chr8g0385631 67.553 188 58 2 1 186 1 187 6.00e-92 268
Msa0428270 MtrunA17_Chr8g0385601 68.421 190 55 3 1 186 1 189 7.85e-91 266
Msa0428270 MtrunA17_Chr8g0385611 60.759 158 59 3 1 156 1 157 9.60e-62 189
Msa0428270 MtrunA17_Chr8g0385621 60.000 40 16 0 160 199 4 43 4.72e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0428270 AT3G23760.1 63.158 190 62 3 7 190 7 194 6.62e-85 250
Msa0428270 AT4G14100.1 61.780 191 68 3 4 191 2 190 3.97e-84 248

Find 82 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGATGATGCTACCTATTT+AGG 0.162321 3_2:+79114551 Msa0428270:CDS
GGAAAATTGATGTTAATATT+TGG 0.214223 3_2:-79115293 None:intergenic
GTTTCCATTATTGTTGGGTT+AGG 0.253401 3_2:+79113992 Msa0428270:five_prime_UTR
AAGCGGATCCCTACAGAAAT+TGG 0.272446 3_2:+79114349 Msa0428270:CDS
CAAAATTTGATTTATGAGTT+TGG 0.276437 3_2:-79115355 None:intergenic
ATAAGAATTTGATGAATGTT+AGG 0.281121 3_2:-79114154 None:intergenic
TCCGGCCAAGCTGCCGGAAC+TGG 0.316253 3_2:-79114296 None:intergenic
AACTTGTTCTTGACCTAAAT+AGG 0.332003 3_2:-79114564 None:intergenic
ATAATTTCCTATGTAATGTT+TGG 0.333466 3_2:+79114588 Msa0428270:CDS
CCCTACAGAAATTGGACTTA+TGG 0.343249 3_2:+79114357 Msa0428270:CDS
TGGGAAATAATGAACTGAAT+TGG 0.344867 3_2:+79115401 Msa0428270:three_prime_UTR
TGCAATAGAACACACCTTTA+CGG 0.348173 3_2:+79114226 Msa0428270:CDS
ACTGTTCGTGGCGATTCTTT+TGG 0.354532 3_2:+79115153 Msa0428270:CDS
TTGTAGGGATGGATGCAATA+TGG 0.358518 3_2:+79115325 Msa0428270:three_prime_UTR
TCTCCCTAACCCAACAATAA+TGG 0.359573 3_2:-79113996 None:intergenic
CAATATCATTGAGTTGATCT+TGG 0.360877 3_2:-79114415 None:intergenic
TTGTAGATTACGACCTTGAA+TGG 0.361181 3_2:+79114435 Msa0428270:CDS
CTCGATGGCGGAGCCAGTTC+CGG 0.363777 3_2:+79114283 Msa0428270:CDS
GTAGCATCATCAAGCCAATT+AGG 0.369633 3_2:-79114542 None:intergenic
TTGGTATTCTCCGTCCTAAT+TGG 0.369794 3_2:+79114528 Msa0428270:CDS
TAATTTCCTATGTAATGTTT+GGG 0.374401 3_2:+79114589 Msa0428270:CDS
TTTCCATTATTGTTGGGTTA+GGG 0.386965 3_2:+79113993 Msa0428270:five_prime_UTR
CAATCATTCGGAAATACATT+AGG 0.415273 3_2:-79115260 None:intergenic
TAAGAATTTGATGAATGTTA+GGG 0.417757 3_2:-79114153 None:intergenic
GCCAGTTCCGGCAGCTTGGC+CGG 0.421754 3_2:+79114295 Msa0428270:CDS
AGTCAGAAACTGTACCCATT+TGG 0.422571 3_2:-79114042 None:intergenic
GGCTAAACTAAACAATCATT+CGG 0.422742 3_2:-79115272 None:intergenic
GTGTAGAAGATCCACTTAAC+AGG 0.439368 3_2:-79114659 None:intergenic
ATTATGTTTCCATTATTGTT+GGG 0.439396 3_2:+79113987 Msa0428270:five_prime_UTR
AACTGCTCCGGCCAAGCTGC+CGG 0.446630 3_2:-79114302 None:intergenic
TTAGAATCTGCTACTGTTCG+TGG 0.447496 3_2:+79115141 Msa0428270:CDS
ATGTTGAAGTTTCGACCGTT+GGG 0.451295 3_2:-79114389 None:intergenic
GTCTGATTGAAGCAGTATAC+AGG 0.464973 3_2:-79115108 None:intergenic
AATTATGTTTCCATTATTGT+TGG 0.466033 3_2:+79113986 Msa0428270:five_prime_UTR
TGCAGTGGCGGTCGGAGGGA+TGG 0.474901 3_2:-79114487 None:intergenic
AGGTTCCATTGGTCCATTCA+AGG 0.477181 3_2:-79114448 None:intergenic
CCATCATCATCTTGTAGGGA+TGG 0.483050 3_2:+79115314 Msa0428270:three_prime_UTR
CTTTCTCCCAAACATTACAT+AGG 0.489592 3_2:-79114595 None:intergenic
GATGTTGAAGTTTCGACCGT+TGG 0.491687 3_2:-79114390 None:intergenic
CGGAGCCAGTTCCGGCAGCT+TGG 0.500739 3_2:+79114291 Msa0428270:CDS
AACCTTGCAGTGGCGGTCGG+AGG 0.511934 3_2:-79114492 None:intergenic
GAGTAGTACCGTTACCGTAA+AGG 0.512409 3_2:-79114240 None:intergenic
GCTGTTATGAGTAATCCAAA+TGG 0.512863 3_2:+79114027 Msa0428270:five_prime_UTR
ACCTTGCAGTGGCGGTCGGA+GGG 0.512978 3_2:-79114491 None:intergenic
CTGTTATGAGTAATCCAAAT+GGG 0.513860 3_2:+79114028 Msa0428270:five_prime_UTR
AAGAATTTGATGAATGTTAG+GGG 0.525802 3_2:-79114152 None:intergenic
ACCATAAGTCCAATTTCTGT+AGG 0.527172 3_2:-79114358 None:intergenic
TCACTCGAAGGCCTGTTAAG+TGG 0.539058 3_2:+79114648 Msa0428270:CDS
GACAACCTTGCAGTGGCGGT+CGG 0.543354 3_2:-79114495 None:intergenic
TGCTCATGTGATGACATTTG+AGG 0.548966 3_2:+79115050 Msa0428270:CDS
GTTAAGTGGATCTTCTACAC+AGG 0.549287 3_2:+79114662 Msa0428270:CDS
GCTTGAGGATGTGCATTGGC+AGG 0.549400 3_2:+79115083 Msa0428270:CDS
TCCCTCCGACCGCCACTGCA+AGG 0.553601 3_2:+79114490 Msa0428270:CDS
GTACATGAAGGAGGTTCCAT+TGG 0.555646 3_2:-79114459 None:intergenic
CCATCCCTACAAGATGATGA+TGG 0.555996 3_2:-79115314 None:intergenic
GCTTCTGTTCATGAATAGTA+CGG 0.566725 3_2:-79114330 None:intergenic
CCATAAGTCCAATTTCTGTA+GGG 0.573008 3_2:-79114357 None:intergenic
CATGGACAACCTTGCAGTGG+CGG 0.573319 3_2:-79114499 None:intergenic
AGTACGGAATGAAACTGCTC+CGG 0.575238 3_2:-79114314 None:intergenic
AATTGGACTTATGGTACGAC+TGG 0.582011 3_2:+79114366 Msa0428270:CDS
TTATGGTACGACTGGCCCAA+CGG 0.591091 3_2:+79114374 Msa0428270:CDS
AGAACACACCTTTACGGTAA+CGG 0.593520 3_2:+79114232 Msa0428270:CDS
CATGTGATGACATTTGAGGT+TGG 0.595333 3_2:+79115054 Msa0428270:CDS
AAGGTTGTCCATGTTGAAGT+TGG 0.595989 3_2:+79114509 Msa0428270:CDS
CGTTCTCTTCTCACTCTCGA+TGG 0.600466 3_2:+79114268 Msa0428270:CDS
GTGGACAAATCTTGAGAGAG+TGG 0.601331 3_2:+79114106 Msa0428270:five_prime_UTR
ATGAAGATGTTCTCACTCGA+AGG 0.605789 3_2:+79114636 Msa0428270:CDS
TGAGGTTGGAGCAGTGCTTG+AGG 0.612681 3_2:+79115068 Msa0428270:CDS
GTTGTTGAAAGCAGCAGCAA+TGG 0.616146 3_2:+79114199 Msa0428270:exon
AGAATTTGATGAATGTTAGG+GGG 0.619442 3_2:-79114151 None:intergenic
TACGACCTTGAATGGACCAA+TGG 0.624357 3_2:+79114443 Msa0428270:CDS
TCTCTTCTCACTCTCGATGG+CGG 0.627961 3_2:+79114271 Msa0428270:CDS
AAAGGTGTGTTCTATTGCAG+AGG 0.630711 3_2:-79114222 None:intergenic
GTACTATTCATGAACAGAAG+CGG 0.639978 3_2:+79114332 Msa0428270:CDS
CATCATCAAGCCAATTAGGA+CGG 0.640457 3_2:-79114538 None:intergenic
GGGATGGAGAGTGTACATGA+AGG 0.647111 3_2:-79114471 None:intergenic
CAGTGCTTGAGGATGTGCAT+TGG 0.659088 3_2:+79115079 Msa0428270:CDS
ATGGAGAGTGTACATGAAGG+AGG 0.663920 3_2:-79114468 None:intergenic
GGAGAATACCAACTTCAACA+TGG 0.664515 3_2:-79114517 None:intergenic
CAACATGGACAACCTTGCAG+TGG 0.677545 3_2:-79114502 None:intergenic
CTACACAGAAATGTGACACG+TGG 0.692435 3_2:+79114076 Msa0428270:five_prime_UTR
TGTGACACGTGGTTTCACAG+TGG 0.741626 3_2:+79114087 Msa0428270:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAATGAAGTTTTAGTTT+TGG - chr3_2:79113959-79113978 None:intergenic 15.0%
!!! TTAAAATGAAGTTTTAGTTT+TGG - chr3_2:79113959-79113978 None:intergenic 15.0%
!! AATTATGTTTCCATTATTGT+TGG + chr3_2:79113986-79114005 Msa0428270:five_prime_UTR 20.0%
!! ATTATGTTTCCATTATTGTT+GGG + chr3_2:79113987-79114006 Msa0428270:five_prime_UTR 20.0%
!! TAAGAATTTGATGAATGTTA+GGG - chr3_2:79114156-79114175 None:intergenic 20.0%
!! ATAAGAATTTGATGAATGTT+AGG - chr3_2:79114157-79114176 None:intergenic 20.0%
!! ATAATTTCCTATGTAATGTT+TGG + chr3_2:79114588-79114607 Msa0428270:CDS 20.0%
!! TAATTTCCTATGTAATGTTT+GGG + chr3_2:79114589-79114608 Msa0428270:CDS 20.0%
!! CTTATATGATAACAATTTGT+CGG + chr3_2:79114806-79114825 Msa0428270:intron 20.0%
!! TGATAAACTAATAAGTTCAA+GGG - chr3_2:79114913-79114932 None:intergenic 20.0%
!! ATGATAAACTAATAAGTTCA+AGG - chr3_2:79114914-79114933 None:intergenic 20.0%
!! GGAAAATTGATGTTAATATT+TGG - chr3_2:79115296-79115315 None:intergenic 20.0%
!!! CAAAATTTGATTTATGAGTT+TGG - chr3_2:79115358-79115377 None:intergenic 20.0%
!! AATTATGTTTCCATTATTGT+TGG + chr3_2:79113986-79114005 Msa0428270:five_prime_UTR 20.0%
!! ATTATGTTTCCATTATTGTT+GGG + chr3_2:79113987-79114006 Msa0428270:five_prime_UTR 20.0%
!! TAAGAATTTGATGAATGTTA+GGG - chr3_2:79114156-79114175 None:intergenic 20.0%
!! ATAAGAATTTGATGAATGTT+AGG - chr3_2:79114157-79114176 None:intergenic 20.0%
!! ATAATTTCCTATGTAATGTT+TGG + chr3_2:79114588-79114607 Msa0428270:CDS 20.0%
!! TAATTTCCTATGTAATGTTT+GGG + chr3_2:79114589-79114608 Msa0428270:CDS 20.0%
!! CTTATATGATAACAATTTGT+CGG + chr3_2:79114806-79114825 Msa0428270:intron 20.0%
!! TGATAAACTAATAAGTTCAA+GGG - chr3_2:79114913-79114932 None:intergenic 20.0%
!! ATGATAAACTAATAAGTTCA+AGG - chr3_2:79114914-79114933 None:intergenic 20.0%
!! GGAAAATTGATGTTAATATT+TGG - chr3_2:79115296-79115315 None:intergenic 20.0%
!!! CAAAATTTGATTTATGAGTT+TGG - chr3_2:79115358-79115377 None:intergenic 20.0%
!!! TCCAACAAATGTTTTTACTT+AGG + chr3_2:79113915-79113934 Msa0428270:five_prime_UTR 25.0%
!!! GAAGTTTTAGTTTTGGTTTA+AGG - chr3_2:79113952-79113971 None:intergenic 25.0%
! AAGAATTTGATGAATGTTAG+GGG - chr3_2:79114155-79114174 None:intergenic 25.0%
!!! TTTGGATTCATTGACTTATT+TGG + chr3_2:79114726-79114745 Msa0428270:intron 25.0%
! TGAATTAAGGTTTGATATAC+TGG + chr3_2:79115008-79115027 Msa0428270:intron 25.0%
!!! TCCAACAAATGTTTTTACTT+AGG + chr3_2:79113915-79113934 Msa0428270:five_prime_UTR 25.0%
!!! GAAGTTTTAGTTTTGGTTTA+AGG - chr3_2:79113952-79113971 None:intergenic 25.0%
! AAGAATTTGATGAATGTTAG+GGG - chr3_2:79114155-79114174 None:intergenic 25.0%
!!! TTTGGATTCATTGACTTATT+TGG + chr3_2:79114726-79114745 Msa0428270:intron 25.0%
! TGAATTAAGGTTTGATATAC+TGG + chr3_2:79115008-79115027 Msa0428270:intron 25.0%
GCCTAAGTAAAAACATTTGT+TGG - chr3_2:79113919-79113938 None:intergenic 30.0%
TTTCCATTATTGTTGGGTTA+GGG + chr3_2:79113993-79114012 Msa0428270:five_prime_UTR 30.0%
CTGTTATGAGTAATCCAAAT+GGG + chr3_2:79114028-79114047 Msa0428270:five_prime_UTR 30.0%
!!! GGAAATTTCATTTTGGGTTT+GGG - chr3_2:79114133-79114152 None:intergenic 30.0%
! TTAGGGGGAAATTTCATTTT+GGG - chr3_2:79114139-79114158 None:intergenic 30.0%
AGAATTTGATGAATGTTAGG+GGG - chr3_2:79114154-79114173 None:intergenic 30.0%
!! CAATATCATTGAGTTGATCT+TGG - chr3_2:79114418-79114437 None:intergenic 30.0%
! AACTTGTTCTTGACCTAAAT+AGG - chr3_2:79114567-79114586 None:intergenic 30.0%
AATGAATCCAAACAGTAACT+AGG - chr3_2:79114718-79114737 None:intergenic 30.0%
CATTCCTGTGAAATGAATTA+AGG + chr3_2:79114995-79115014 Msa0428270:intron 30.0%
CAAACCTTAATTCATTTCAC+AGG - chr3_2:79115002-79115021 None:intergenic 30.0%
GATATACTGGTAATTAATGC+AGG + chr3_2:79115021-79115040 Msa0428270:intron 30.0%
CAATCATTCGGAAATACATT+AGG - chr3_2:79115263-79115282 None:intergenic 30.0%
GGCTAAACTAAACAATCATT+CGG - chr3_2:79115275-79115294 None:intergenic 30.0%
! ATTTTCCATCATCATCTTGT+AGG + chr3_2:79115309-79115328 Msa0428270:three_prime_UTR 30.0%
! TTTTCCATCATCATCTTGTA+GGG + chr3_2:79115310-79115329 Msa0428270:three_prime_UTR 30.0%
!! CTCAGCTATCTTTTACTTTT+GGG + chr3_2:79115382-79115401 Msa0428270:three_prime_UTR 30.0%
TGGGAAATAATGAACTGAAT+TGG + chr3_2:79115401-79115420 Msa0428270:three_prime_UTR 30.0%
GCCTAAGTAAAAACATTTGT+TGG - chr3_2:79113919-79113938 None:intergenic 30.0%
TTTCCATTATTGTTGGGTTA+GGG + chr3_2:79113993-79114012 Msa0428270:five_prime_UTR 30.0%
CTGTTATGAGTAATCCAAAT+GGG + chr3_2:79114028-79114047 Msa0428270:five_prime_UTR 30.0%
!!! GGAAATTTCATTTTGGGTTT+GGG - chr3_2:79114133-79114152 None:intergenic 30.0%
! TTAGGGGGAAATTTCATTTT+GGG - chr3_2:79114139-79114158 None:intergenic 30.0%
AGAATTTGATGAATGTTAGG+GGG - chr3_2:79114154-79114173 None:intergenic 30.0%
!! CAATATCATTGAGTTGATCT+TGG - chr3_2:79114418-79114437 None:intergenic 30.0%
! AACTTGTTCTTGACCTAAAT+AGG - chr3_2:79114567-79114586 None:intergenic 30.0%
AATGAATCCAAACAGTAACT+AGG - chr3_2:79114718-79114737 None:intergenic 30.0%
CATTCCTGTGAAATGAATTA+AGG + chr3_2:79114995-79115014 Msa0428270:intron 30.0%
CAAACCTTAATTCATTTCAC+AGG - chr3_2:79115002-79115021 None:intergenic 30.0%
GATATACTGGTAATTAATGC+AGG + chr3_2:79115021-79115040 Msa0428270:intron 30.0%
CAATCATTCGGAAATACATT+AGG - chr3_2:79115263-79115282 None:intergenic 30.0%
GGCTAAACTAAACAATCATT+CGG - chr3_2:79115275-79115294 None:intergenic 30.0%
! ATTTTCCATCATCATCTTGT+AGG + chr3_2:79115309-79115328 Msa0428270:three_prime_UTR 30.0%
! TTTTCCATCATCATCTTGTA+GGG + chr3_2:79115310-79115329 Msa0428270:three_prime_UTR 30.0%
!! CTCAGCTATCTTTTACTTTT+GGG + chr3_2:79115382-79115401 Msa0428270:three_prime_UTR 30.0%
TGGGAAATAATGAACTGAAT+TGG + chr3_2:79115401-79115420 Msa0428270:three_prime_UTR 30.0%
GTTTCCATTATTGTTGGGTT+AGG + chr3_2:79113992-79114011 Msa0428270:five_prime_UTR 35.0%
GCTGTTATGAGTAATCCAAA+TGG + chr3_2:79114027-79114046 Msa0428270:five_prime_UTR 35.0%
!!! GGGAAATTTCATTTTGGGTT+TGG - chr3_2:79114134-79114153 None:intergenic 35.0%
! GTTAGGGGGAAATTTCATTT+TGG - chr3_2:79114140-79114159 None:intergenic 35.0%
TGCAATAGAACACACCTTTA+CGG + chr3_2:79114226-79114245 Msa0428270:CDS 35.0%
GCTTCTGTTCATGAATAGTA+CGG - chr3_2:79114333-79114352 None:intergenic 35.0%
GTACTATTCATGAACAGAAG+CGG + chr3_2:79114332-79114351 Msa0428270:CDS 35.0%
CCATAAGTCCAATTTCTGTA+GGG - chr3_2:79114360-79114379 None:intergenic 35.0%
ACCATAAGTCCAATTTCTGT+AGG - chr3_2:79114361-79114380 None:intergenic 35.0%
TTGTAGATTACGACCTTGAA+TGG + chr3_2:79114435-79114454 Msa0428270:CDS 35.0%
!! CTTGATGATGCTACCTATTT+AGG + chr3_2:79114551-79114570 Msa0428270:CDS 35.0%
CTTTCTCCCAAACATTACAT+AGG - chr3_2:79114598-79114617 None:intergenic 35.0%
TATCACTCCTAGTTACTGTT+TGG + chr3_2:79114708-79114727 Msa0428270:intron 35.0%
!! TCTTTTGGAAGTTTGATGAG+AGG + chr3_2:79115168-79115187 Msa0428270:CDS 35.0%
! GCTCAGCTATCTTTTACTTT+TGG + chr3_2:79115381-79115400 Msa0428270:three_prime_UTR 35.0%
GTTTCCATTATTGTTGGGTT+AGG + chr3_2:79113992-79114011 Msa0428270:five_prime_UTR 35.0%
GCTGTTATGAGTAATCCAAA+TGG + chr3_2:79114027-79114046 Msa0428270:five_prime_UTR 35.0%
!!! GGGAAATTTCATTTTGGGTT+TGG - chr3_2:79114134-79114153 None:intergenic 35.0%
! GTTAGGGGGAAATTTCATTT+TGG - chr3_2:79114140-79114159 None:intergenic 35.0%
TGCAATAGAACACACCTTTA+CGG + chr3_2:79114226-79114245 Msa0428270:CDS 35.0%
GCTTCTGTTCATGAATAGTA+CGG - chr3_2:79114333-79114352 None:intergenic 35.0%
GTACTATTCATGAACAGAAG+CGG + chr3_2:79114332-79114351 Msa0428270:CDS 35.0%
CCATAAGTCCAATTTCTGTA+GGG - chr3_2:79114360-79114379 None:intergenic 35.0%
ACCATAAGTCCAATTTCTGT+AGG - chr3_2:79114361-79114380 None:intergenic 35.0%
TTGTAGATTACGACCTTGAA+TGG + chr3_2:79114435-79114454 Msa0428270:CDS 35.0%
!! CTTGATGATGCTACCTATTT+AGG + chr3_2:79114551-79114570 Msa0428270:CDS 35.0%
CTTTCTCCCAAACATTACAT+AGG - chr3_2:79114598-79114617 None:intergenic 35.0%
TATCACTCCTAGTTACTGTT+TGG + chr3_2:79114708-79114727 Msa0428270:intron 35.0%
!! TCTTTTGGAAGTTTGATGAG+AGG + chr3_2:79115168-79115187 Msa0428270:CDS 35.0%
! GCTCAGCTATCTTTTACTTT+TGG + chr3_2:79115381-79115400 Msa0428270:three_prime_UTR 35.0%
TCTCCCTAACCCAACAATAA+TGG - chr3_2:79113999-79114018 None:intergenic 40.0%
AGTCAGAAACTGTACCCATT+TGG - chr3_2:79114045-79114064 None:intergenic 40.0%
! AAAGGTGTGTTCTATTGCAG+AGG - chr3_2:79114225-79114244 None:intergenic 40.0%
AGAACACACCTTTACGGTAA+CGG + chr3_2:79114232-79114251 Msa0428270:CDS 40.0%
CCCTACAGAAATTGGACTTA+TGG + chr3_2:79114357-79114376 Msa0428270:CDS 40.0%
AATTGGACTTATGGTACGAC+TGG + chr3_2:79114366-79114385 Msa0428270:CDS 40.0%
ATGTTGAAGTTTCGACCGTT+GGG - chr3_2:79114392-79114411 None:intergenic 40.0%
AAGGTTGTCCATGTTGAAGT+TGG + chr3_2:79114509-79114528 Msa0428270:CDS 40.0%
GGAGAATACCAACTTCAACA+TGG - chr3_2:79114520-79114539 None:intergenic 40.0%
TTGGTATTCTCCGTCCTAAT+TGG + chr3_2:79114528-79114547 Msa0428270:CDS 40.0%
CATCATCAAGCCAATTAGGA+CGG - chr3_2:79114541-79114560 None:intergenic 40.0%
GTAGCATCATCAAGCCAATT+AGG - chr3_2:79114545-79114564 None:intergenic 40.0%
ATGAAGATGTTCTCACTCGA+AGG + chr3_2:79114636-79114655 Msa0428270:CDS 40.0%
GTGTAGAAGATCCACTTAAC+AGG - chr3_2:79114662-79114681 None:intergenic 40.0%
GTTAAGTGGATCTTCTACAC+AGG + chr3_2:79114662-79114681 Msa0428270:CDS 40.0%
TGCTCATGTGATGACATTTG+AGG + chr3_2:79115050-79115069 Msa0428270:CDS 40.0%
! CATGTGATGACATTTGAGGT+TGG + chr3_2:79115054-79115073 Msa0428270:CDS 40.0%
GTCTGATTGAAGCAGTATAC+AGG - chr3_2:79115111-79115130 None:intergenic 40.0%
TTAGAATCTGCTACTGTTCG+TGG + chr3_2:79115141-79115160 Msa0428270:CDS 40.0%
TTGTAGGGATGGATGCAATA+TGG + chr3_2:79115325-79115344 Msa0428270:three_prime_UTR 40.0%
TCTCCCTAACCCAACAATAA+TGG - chr3_2:79113999-79114018 None:intergenic 40.0%
AGTCAGAAACTGTACCCATT+TGG - chr3_2:79114045-79114064 None:intergenic 40.0%
! AAAGGTGTGTTCTATTGCAG+AGG - chr3_2:79114225-79114244 None:intergenic 40.0%
AGAACACACCTTTACGGTAA+CGG + chr3_2:79114232-79114251 Msa0428270:CDS 40.0%
CCCTACAGAAATTGGACTTA+TGG + chr3_2:79114357-79114376 Msa0428270:CDS 40.0%
AATTGGACTTATGGTACGAC+TGG + chr3_2:79114366-79114385 Msa0428270:CDS 40.0%
ATGTTGAAGTTTCGACCGTT+GGG - chr3_2:79114392-79114411 None:intergenic 40.0%
AAGGTTGTCCATGTTGAAGT+TGG + chr3_2:79114509-79114528 Msa0428270:CDS 40.0%
GGAGAATACCAACTTCAACA+TGG - chr3_2:79114520-79114539 None:intergenic 40.0%
TTGGTATTCTCCGTCCTAAT+TGG + chr3_2:79114528-79114547 Msa0428270:CDS 40.0%
CATCATCAAGCCAATTAGGA+CGG - chr3_2:79114541-79114560 None:intergenic 40.0%
GTAGCATCATCAAGCCAATT+AGG - chr3_2:79114545-79114564 None:intergenic 40.0%
ATGAAGATGTTCTCACTCGA+AGG + chr3_2:79114636-79114655 Msa0428270:CDS 40.0%
GTGTAGAAGATCCACTTAAC+AGG - chr3_2:79114662-79114681 None:intergenic 40.0%
GTTAAGTGGATCTTCTACAC+AGG + chr3_2:79114662-79114681 Msa0428270:CDS 40.0%
TGCTCATGTGATGACATTTG+AGG + chr3_2:79115050-79115069 Msa0428270:CDS 40.0%
! CATGTGATGACATTTGAGGT+TGG + chr3_2:79115054-79115073 Msa0428270:CDS 40.0%
GTCTGATTGAAGCAGTATAC+AGG - chr3_2:79115111-79115130 None:intergenic 40.0%
TTAGAATCTGCTACTGTTCG+TGG + chr3_2:79115141-79115160 Msa0428270:CDS 40.0%
TTGTAGGGATGGATGCAATA+TGG + chr3_2:79115325-79115344 Msa0428270:three_prime_UTR 40.0%
CTACACAGAAATGTGACACG+TGG + chr3_2:79114076-79114095 Msa0428270:five_prime_UTR 45.0%
GTGGACAAATCTTGAGAGAG+TGG + chr3_2:79114106-79114125 Msa0428270:five_prime_UTR 45.0%
GTTGTTGAAAGCAGCAGCAA+TGG + chr3_2:79114199-79114218 Msa0428270:exon 45.0%
GAGTAGTACCGTTACCGTAA+AGG - chr3_2:79114243-79114262 None:intergenic 45.0%
AGTACGGAATGAAACTGCTC+CGG - chr3_2:79114317-79114336 None:intergenic 45.0%
AAGCGGATCCCTACAGAAAT+TGG + chr3_2:79114349-79114368 Msa0428270:CDS 45.0%
GATGTTGAAGTTTCGACCGT+TGG - chr3_2:79114393-79114412 None:intergenic 45.0%
TACGACCTTGAATGGACCAA+TGG + chr3_2:79114443-79114462 Msa0428270:CDS 45.0%
AGGTTCCATTGGTCCATTCA+AGG - chr3_2:79114451-79114470 None:intergenic 45.0%
GTACATGAAGGAGGTTCCAT+TGG - chr3_2:79114462-79114481 None:intergenic 45.0%
! ATGGAGAGTGTACATGAAGG+AGG - chr3_2:79114471-79114490 None:intergenic 45.0%
! ACTGTTCGTGGCGATTCTTT+TGG + chr3_2:79115153-79115172 Msa0428270:CDS 45.0%
CCATCCCTACAAGATGATGA+TGG - chr3_2:79115317-79115336 None:intergenic 45.0%
CCATCATCATCTTGTAGGGA+TGG + chr3_2:79115314-79115333 Msa0428270:three_prime_UTR 45.0%
CTACACAGAAATGTGACACG+TGG + chr3_2:79114076-79114095 Msa0428270:five_prime_UTR 45.0%
GTGGACAAATCTTGAGAGAG+TGG + chr3_2:79114106-79114125 Msa0428270:five_prime_UTR 45.0%
GTTGTTGAAAGCAGCAGCAA+TGG + chr3_2:79114199-79114218 Msa0428270:exon 45.0%
GAGTAGTACCGTTACCGTAA+AGG - chr3_2:79114243-79114262 None:intergenic 45.0%
AGTACGGAATGAAACTGCTC+CGG - chr3_2:79114317-79114336 None:intergenic 45.0%
AAGCGGATCCCTACAGAAAT+TGG + chr3_2:79114349-79114368 Msa0428270:CDS 45.0%
GATGTTGAAGTTTCGACCGT+TGG - chr3_2:79114393-79114412 None:intergenic 45.0%
TACGACCTTGAATGGACCAA+TGG + chr3_2:79114443-79114462 Msa0428270:CDS 45.0%
AGGTTCCATTGGTCCATTCA+AGG - chr3_2:79114451-79114470 None:intergenic 45.0%
GTACATGAAGGAGGTTCCAT+TGG - chr3_2:79114462-79114481 None:intergenic 45.0%
! ATGGAGAGTGTACATGAAGG+AGG - chr3_2:79114471-79114490 None:intergenic 45.0%
! ACTGTTCGTGGCGATTCTTT+TGG + chr3_2:79115153-79115172 Msa0428270:CDS 45.0%
CCATCCCTACAAGATGATGA+TGG - chr3_2:79115317-79115336 None:intergenic 45.0%
CCATCATCATCTTGTAGGGA+TGG + chr3_2:79115314-79115333 Msa0428270:three_prime_UTR 45.0%
TGTGACACGTGGTTTCACAG+TGG + chr3_2:79114087-79114106 Msa0428270:five_prime_UTR 50.0%
CGTTCTCTTCTCACTCTCGA+TGG + chr3_2:79114268-79114287 Msa0428270:CDS 50.0%
TCTCTTCTCACTCTCGATGG+CGG + chr3_2:79114271-79114290 Msa0428270:CDS 50.0%
! TTATGGTACGACTGGCCCAA+CGG + chr3_2:79114374-79114393 Msa0428270:CDS 50.0%
! GGGATGGAGAGTGTACATGA+AGG - chr3_2:79114474-79114493 None:intergenic 50.0%
CAACATGGACAACCTTGCAG+TGG - chr3_2:79114505-79114524 None:intergenic 50.0%
TCACTCGAAGGCCTGTTAAG+TGG + chr3_2:79114648-79114667 Msa0428270:CDS 50.0%
CAGTGCTTGAGGATGTGCAT+TGG + chr3_2:79115079-79115098 Msa0428270:CDS 50.0%
TGTGACACGTGGTTTCACAG+TGG + chr3_2:79114087-79114106 Msa0428270:five_prime_UTR 50.0%
CGTTCTCTTCTCACTCTCGA+TGG + chr3_2:79114268-79114287 Msa0428270:CDS 50.0%
TCTCTTCTCACTCTCGATGG+CGG + chr3_2:79114271-79114290 Msa0428270:CDS 50.0%
! TTATGGTACGACTGGCCCAA+CGG + chr3_2:79114374-79114393 Msa0428270:CDS 50.0%
! GGGATGGAGAGTGTACATGA+AGG - chr3_2:79114474-79114493 None:intergenic 50.0%
CAACATGGACAACCTTGCAG+TGG - chr3_2:79114505-79114524 None:intergenic 50.0%
TCACTCGAAGGCCTGTTAAG+TGG + chr3_2:79114648-79114667 Msa0428270:CDS 50.0%
CAGTGCTTGAGGATGTGCAT+TGG + chr3_2:79115079-79115098 Msa0428270:CDS 50.0%
CATGGACAACCTTGCAGTGG+CGG - chr3_2:79114502-79114521 None:intergenic 55.0%
TGAGGTTGGAGCAGTGCTTG+AGG + chr3_2:79115068-79115087 Msa0428270:CDS 55.0%
! GCTTGAGGATGTGCATTGGC+AGG + chr3_2:79115083-79115102 Msa0428270:CDS 55.0%
CATGGACAACCTTGCAGTGG+CGG - chr3_2:79114502-79114521 None:intergenic 55.0%
TGAGGTTGGAGCAGTGCTTG+AGG + chr3_2:79115068-79115087 Msa0428270:CDS 55.0%
! GCTTGAGGATGTGCATTGGC+AGG + chr3_2:79115083-79115102 Msa0428270:CDS 55.0%
GACAACCTTGCAGTGGCGGT+CGG - chr3_2:79114498-79114517 None:intergenic 60.0%
TGCTGCTGCTGCTGCTGCAT+AGG + chr3_2:79115203-79115222 Msa0428270:CDS 60.0%
GACAACCTTGCAGTGGCGGT+CGG - chr3_2:79114498-79114517 None:intergenic 60.0%
TGCTGCTGCTGCTGCTGCAT+AGG + chr3_2:79115203-79115222 Msa0428270:CDS 60.0%
!! CTCGATGGCGGAGCCAGTTC+CGG + chr3_2:79114283-79114302 Msa0428270:CDS 65.0%
AACTGCTCCGGCCAAGCTGC+CGG - chr3_2:79114305-79114324 None:intergenic 65.0%
ACCTTGCAGTGGCGGTCGGA+GGG - chr3_2:79114494-79114513 None:intergenic 65.0%
AACCTTGCAGTGGCGGTCGG+AGG - chr3_2:79114495-79114514 None:intergenic 65.0%
!! CTCGATGGCGGAGCCAGTTC+CGG + chr3_2:79114283-79114302 Msa0428270:CDS 65.0%
AACTGCTCCGGCCAAGCTGC+CGG - chr3_2:79114305-79114324 None:intergenic 65.0%
ACCTTGCAGTGGCGGTCGGA+GGG - chr3_2:79114494-79114513 None:intergenic 65.0%
AACCTTGCAGTGGCGGTCGG+AGG - chr3_2:79114495-79114514 None:intergenic 65.0%
CGGAGCCAGTTCCGGCAGCT+TGG + chr3_2:79114291-79114310 Msa0428270:CDS 70.0%
GCCAGTTCCGGCAGCTTGGC+CGG + chr3_2:79114295-79114314 Msa0428270:CDS 70.0%
TCCGGCCAAGCTGCCGGAAC+TGG - chr3_2:79114299-79114318 None:intergenic 70.0%
TGCAGTGGCGGTCGGAGGGA+TGG - chr3_2:79114490-79114509 None:intergenic 70.0%
TCCCTCCGACCGCCACTGCA+AGG + chr3_2:79114490-79114509 Msa0428270:CDS 70.0%
CGGAGCCAGTTCCGGCAGCT+TGG + chr3_2:79114291-79114310 Msa0428270:CDS 70.0%
GCCAGTTCCGGCAGCTTGGC+CGG + chr3_2:79114295-79114314 Msa0428270:CDS 70.0%
TCCGGCCAAGCTGCCGGAAC+TGG - chr3_2:79114299-79114318 None:intergenic 70.0%
TGCAGTGGCGGTCGGAGGGA+TGG - chr3_2:79114490-79114509 None:intergenic 70.0%
TCCCTCCGACCGCCACTGCA+AGG + chr3_2:79114490-79114509 Msa0428270:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 79113890 79115447 79113890 ID=Msa0428270;Name=Msa0428270
chr3_2 mRNA 79113890 79115447 79113890 ID=Msa0428270-mRNA-1;Parent=Msa0428270;Name=Msa0428270-mRNA-1;_AED=0.21;_eAED=0.21;_QI=328|1|1|1|1|1|2|223|215
chr3_2 exon 79113890 79114683 79113890 ID=Msa0428270-mRNA-1:exon:21244;Parent=Msa0428270-mRNA-1
chr3_2 exon 79115043 79115447 79115043 ID=Msa0428270-mRNA-1:exon:21245;Parent=Msa0428270-mRNA-1
chr3_2 five_prime_UTR 79113890 79114217 79113890 ID=Msa0428270-mRNA-1:five_prime_utr;Parent=Msa0428270-mRNA-1
chr3_2 CDS 79114218 79114683 79114218 ID=Msa0428270-mRNA-1:cds;Parent=Msa0428270-mRNA-1
chr3_2 CDS 79115043 79115224 79115043 ID=Msa0428270-mRNA-1:cds;Parent=Msa0428270-mRNA-1
chr3_2 three_prime_UTR 79115225 79115447 79115225 ID=Msa0428270-mRNA-1:three_prime_utr;Parent=Msa0428270-mRNA-1
Gene Sequence

>Msa0428270

ATGGCCTCTGCAATAGAACACACCTTTACGGTAACGGTACTACTCTCTGTCGTTCTCTTCTCACTCTCGATGGCGGAGCCAGTTCCGGCAGCTTGGCCGGAGCAGTTTCATTCCGTACTATTCATGAACAGAAGCGGATCCCTACAGAAATTGGACTTATGGTACGACTGGCCCAACGGTCGAAACTTCAACATCATCCAAGATCAACTCAATGATATTGTAGATTACGACCTTGAATGGACCAATGGAACCTCCTTCATGTACACTCTCCATCCCTCCGACCGCCACTGCAAGGTTGTCCATGTTGAAGTTGGTATTCTCCGTCCTAATTGGCTTGATGATGCTACCTATTTAGGTCAAGAACAAGTTGATAATTTCCTATGTAATGTTTGGGAGAAAGTTGATTTCATTGTGTATTATGAAGATGTTCTCACTCGAAGGCCTGTTAAGTGGATCTTCTACACAGGATACACTGCTCATGTGATGACATTTGAGGTTGGAGCAGTGCTTGAGGATGTGCATTGGCAGGCTCCTGTATACTGCTTCAATCAGACTGAGAATATGTTAGAATCTGCTACTGTTCGTGGCGATTCTTTTGGAAGTTTGATGAGAGGCAAAGTCGATGCTGCTGCTGCTGCTGCTGCATAG

Protein sequence

>Msa0428270

MASAIEHTFTVTVLLSVVLFSLSMAEPVPAAWPEQFHSVLFMNRSGSLQKLDLWYDWPNGRNFNIIQDQLNDIVDYDLEWTNGTSFMYTLHPSDRHCKVVHVEVGILRPNWLDDATYLGQEQVDNFLCNVWEKVDFIVYYEDVLTRRPVKWIFYTGYTAHVMTFEVGAVLEDVHWQAPVYCFNQTENMLESATVRGDSFGSLMRGKVDAAAAAAA*