AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1444130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1444130 MtrunA17_Chr4g0057421 95.968 248 10 0 1 248 1 248 1.50e-155 432
Msa1444130 MtrunA17_Chr7g0275981 28.111 217 129 9 6 215 29 225 2.33e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1444130 AT4G09650.1 55.600 250 92 3 1 248 1 233 4.90e-90 266

Find 67 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGCGTAGCTGGCGGCGGC+TGG 0.162799 tig0030662:+934 None:intergenic
GGTGAGGGTTGTTGTGGTTT+TGG 0.164088 tig0030662:+1077 None:intergenic
ACCGTCAGGTATGGGAATTC+TGG 0.172359 tig0030662:-487 Msa1444130:CDS
ATGAGGTTGAGGATGGGTTT+TGG 0.198972 tig0030662:+1054 None:intergenic
GGTGCGGCGGGGTTTGGTTT+TGG 0.225649 tig0030662:+990 None:intergenic
TGCGCCACCGCCGGTGCGGC+GGG 0.238128 tig0030662:+978 None:intergenic
TTGGTGGAGTCTTCGATAAT+TGG 0.238527 tig0030662:+799 None:intergenic
AATTGCTGCTCAACTTGATT+TGG 0.271511 tig0030662:-422 Msa1444130:CDS
TGGCGTAGCTGGCGGCGGCT+GGG 0.280536 tig0030662:+935 None:intergenic
CGCACCGGCGGTGGCGCACT+TGG 0.293106 tig0030662:-973 Msa1444130:CDS
AACTGCTCTTGATCCAAGTT+TGG 0.310216 tig0030662:-521 Msa1444130:CDS
ACCGCCGGTGCGGCGGGGTT+TGG 0.319431 tig0030662:+984 None:intergenic
AGGTGAAGGTGGTGCGGGAG+AGG 0.326146 tig0030662:+1031 None:intergenic
TTTAGCGCAGATTGCGAAAC+AGG 0.332243 tig0030662:-581 Msa1444130:CDS
GTCGAGGGTGTTGTTGGATT+TGG 0.360334 tig0030662:+894 None:intergenic
GAGAAATAGTCGAACACCTT+GGG 0.363815 tig0030662:+826 None:intergenic
ATTGCTGCTCAACTTGATTT+GGG 0.372073 tig0030662:-421 Msa1444130:CDS
CCGTCAGGTATGGGAATTCT+GGG 0.374285 tig0030662:-486 Msa1444130:CDS
GGTGTCTTCAGTGGTGAAAT+TGG 0.383089 tig0030662:-614 Msa1444130:CDS
GGCTAATGCGGTGGCGTAGC+TGG 0.387942 tig0030662:+924 None:intergenic
AGCGATGAGTTTGCGTTTGG+TGG 0.395419 tig0030662:+783 None:intergenic
GTAAAACCCGCCACCAAACT+TGG 0.397977 tig0030662:+508 None:intergenic
TGGTGGAGTCTTCGATAATT+GGG 0.398456 tig0030662:+800 None:intergenic
GGCGTAGCTGGCGGCGGCTG+GGG 0.401952 tig0030662:+936 None:intergenic
GTTGTTGGATTTGGCTAAAT+CGG 0.409703 tig0030662:+903 None:intergenic
AAACCCCGCCGCACCGGCGG+TGG 0.420052 tig0030662:-982 Msa1444130:CDS
TTCAGCGATGAGTTTGCGTT+TGG 0.420804 tig0030662:+780 None:intergenic
GGAGAGGATGAGGTTGAGGA+TGG 0.424030 tig0030662:+1047 None:intergenic
GGTGGCGTCGAGGGTGTTGT+TGG 0.434585 tig0030662:+888 None:intergenic
TGGGGAGGTGAAGGTGGTGC+GGG 0.436035 tig0030662:+1026 None:intergenic
TGCGGTGGCGTAGCTGGCGG+CGG 0.438767 tig0030662:+930 None:intergenic
TTTGTCGATGTCAGCGGTGG+TGG 0.445558 tig0030662:+870 None:intergenic
AGGTGGTGCGGGAGAGGATG+AGG 0.454682 tig0030662:+1037 None:intergenic
GTCAGCGGTGGTGGCGTCGA+GGG 0.465818 tig0030662:+879 None:intergenic
TTGGGGAGGTGAAGGTGGTG+CGG 0.467344 tig0030662:+1025 None:intergenic
GGAGCCAAGTGCGCCACCGC+CGG 0.467362 tig0030662:+969 None:intergenic
TGCGGGAGAGGATGAGGTTG+AGG 0.468450 tig0030662:+1043 None:intergenic
AAAACCAAACCCCGCCGCAC+CGG 0.470667 tig0030662:-988 Msa1444130:CDS
CTTGATCCAAGTTTGGTGGC+GGG 0.474377 tig0030662:-514 Msa1444130:CDS
CAAGTGCGCCACCGCCGGTG+CGG 0.475361 tig0030662:+974 None:intergenic
TTTGGAGTAGATTGAGGCTG+TGG 0.484590 tig0030662:+1107 None:intergenic
TGCTCTTGATCCAAGTTTGG+TGG 0.485731 tig0030662:-518 Msa1444130:CDS
GATTGGTTTGGAGTAGATTG+AGG 0.502890 tig0030662:+1101 None:intergenic
TCTTGATCCAAGTTTGGTGG+CGG 0.512469 tig0030662:-515 Msa1444130:CDS
TTCTGTTTGCTTCGATGAGG+AGG 0.515130 tig0030662:+710 None:intergenic
TTGCTTCGATGAGGAGGTTG+AGG 0.520100 tig0030662:+716 None:intergenic
ACCAAACCCCGCCGCACCGG+CGG 0.521926 tig0030662:-985 Msa1444130:CDS
GCGCCACCGCCGGTGCGGCG+GGG 0.523246 tig0030662:+979 None:intergenic
GAGAGGATGAGGTTGAGGAT+GGG 0.530175 tig0030662:+1048 None:intergenic
GGAGTCTTCGATAATTGGGC+TGG 0.533217 tig0030662:+804 None:intergenic
GGAGAAATAGTCGAACACCT+TGG 0.545934 tig0030662:+825 None:intergenic
CGATTCTGTTTGCTTCGATG+AGG 0.552223 tig0030662:+707 None:intergenic
TAATGCGGTGGCGTAGCTGG+CGG 0.559050 tig0030662:+927 None:intergenic
GGCTAAATCGGCTAATGCGG+TGG 0.571556 tig0030662:+915 None:intergenic
GCTTGTTGTGGTGTCTTCAG+TGG 0.590381 tig0030662:-623 Msa1444130:CDS
TGTCAGCGGTGGTGGCGTCG+AGG 0.591340 tig0030662:+878 None:intergenic
GGCGGCTGGGGAGTTCATTG+TGG 0.606376 tig0030662:+948 None:intergenic
AGAACTCTTCACTGACCCCA+AGG 0.615212 tig0030662:-842 Msa1444130:CDS
CGAATTCTCTCACGATGTCG+AGG 0.616657 tig0030662:+677 None:intergenic
TTTGGCTAAATCGGCTAATG+CGG 0.625107 tig0030662:+912 None:intergenic
AACCGACACAGAGCTTGTTG+TGG 0.631106 tig0030662:-635 Msa1444130:CDS
TCACAGGGGCGAAGAATGTG+AGG 0.634295 tig0030662:-549 Msa1444130:CDS
GAGTGTTAAGAAGAAACTTG+AGG 0.637701 tig0030662:-446 Msa1444130:CDS
CACCACAACAAGCTCTGTGT+CGG 0.640807 tig0030662:+633 None:intergenic
CCCAGAATTCCCATACCTGA+CGG 0.678407 tig0030662:+486 None:intergenic
TGTGTGTGGTTGGAAGCTAG+AGG 0.683601 tig0030662:+747 None:intergenic
AGAAATAGTCGAACACCTTG+GGG 0.687282 tig0030662:+827 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTTGGAGAGTTTGAGTTTT+GGG + tig0030662:521-540 None:intergenic 30.0%
!! TTTTGGAGAGTTTGAGTTTT+GGG + tig0030662:521-540 None:intergenic 30.0%
!! TTTGGAGAGTTTGAGTTTTG+GGG + tig0030662:520-539 None:intergenic 35.0%
!!! GTTTTGGAGAGTTTGAGTTT+TGG + tig0030662:522-541 None:intergenic 35.0%
GTTGTTGGATTTGGCTAAAT+CGG + tig0030662:625-644 None:intergenic 35.0%
AAACAGGTTCAAAAACTCAC+AGG - tig0030662:960-979 Msa1444130:CDS 35.0%
AACAGGTTCAAAAACTCACA+GGG - tig0030662:961-980 Msa1444130:CDS 35.0%
GAGTGTTAAGAAGAAACTTG+AGG - tig0030662:1079-1098 Msa1444130:CDS 35.0%
AATTGCTGCTCAACTTGATT+TGG - tig0030662:1103-1122 Msa1444130:CDS 35.0%
ATTGCTGCTCAACTTGATTT+GGG - tig0030662:1104-1123 Msa1444130:CDS 35.0%
!! TTTGGAGAGTTTGAGTTTTG+GGG + tig0030662:520-539 None:intergenic 35.0%
!!! GTTTTGGAGAGTTTGAGTTT+TGG + tig0030662:522-541 None:intergenic 35.0%
GTTGTTGGATTTGGCTAAAT+CGG + tig0030662:625-644 None:intergenic 35.0%
AAACAGGTTCAAAAACTCAC+AGG - tig0030662:960-979 Msa1444130:CDS 35.0%
AACAGGTTCAAAAACTCACA+GGG - tig0030662:961-980 Msa1444130:CDS 35.0%
GAGTGTTAAGAAGAAACTTG+AGG - tig0030662:1079-1098 Msa1444130:CDS 35.0%
AATTGCTGCTCAACTTGATT+TGG - tig0030662:1103-1122 Msa1444130:CDS 35.0%
ATTGCTGCTCAACTTGATTT+GGG - tig0030662:1104-1123 Msa1444130:CDS 35.0%
!! GATTGGTTTGGAGTAGATTG+AGG + tig0030662:427-446 None:intergenic 40.0%
TTTGGCTAAATCGGCTAATG+CGG + tig0030662:616-635 None:intergenic 40.0%
! TTCGATTTTGTCGATGTCAG+CGG + tig0030662:664-683 None:intergenic 40.0%
AGAAATAGTCGAACACCTTG+GGG + tig0030662:701-720 None:intergenic 40.0%
GAGAAATAGTCGAACACCTT+GGG + tig0030662:702-721 None:intergenic 40.0%
TGGTGGAGTCTTCGATAATT+GGG + tig0030662:728-747 None:intergenic 40.0%
TTGGTGGAGTCTTCGATAAT+TGG + tig0030662:729-748 None:intergenic 40.0%
!! TTGAGGAAGTTTTGTGTGTG+TGG + tig0030662:795-814 None:intergenic 40.0%
ACAGGTTCAAAAACTCACAG+GGG - tig0030662:962-981 Msa1444130:CDS 40.0%
AACTGCTCTTGATCCAAGTT+TGG - tig0030662:1004-1023 Msa1444130:CDS 40.0%
!! GATTGGTTTGGAGTAGATTG+AGG + tig0030662:427-446 None:intergenic 40.0%
TTTGGCTAAATCGGCTAATG+CGG + tig0030662:616-635 None:intergenic 40.0%
! TTCGATTTTGTCGATGTCAG+CGG + tig0030662:664-683 None:intergenic 40.0%
AGAAATAGTCGAACACCTTG+GGG + tig0030662:701-720 None:intergenic 40.0%
GAGAAATAGTCGAACACCTT+GGG + tig0030662:702-721 None:intergenic 40.0%
TGGTGGAGTCTTCGATAATT+GGG + tig0030662:728-747 None:intergenic 40.0%
TTGGTGGAGTCTTCGATAAT+TGG + tig0030662:729-748 None:intergenic 40.0%
!! TTGAGGAAGTTTTGTGTGTG+TGG + tig0030662:795-814 None:intergenic 40.0%
ACAGGTTCAAAAACTCACAG+GGG - tig0030662:962-981 Msa1444130:CDS 40.0%
AACTGCTCTTGATCCAAGTT+TGG - tig0030662:1004-1023 Msa1444130:CDS 40.0%
! TTTGGAGTAGATTGAGGCTG+TGG + tig0030662:421-440 None:intergenic 45.0%
!!! TGTGGTTTTGGGGATTGGTT+TGG + tig0030662:439-458 None:intergenic 45.0%
!!! GTTGTTGTGGTTTTGGGGAT+TGG + tig0030662:444-463 None:intergenic 45.0%
!! TGAGGGTTGTTGTGGTTTTG+GGG + tig0030662:449-468 None:intergenic 45.0%
! GTGAGGGTTGTTGTGGTTTT+GGG + tig0030662:450-469 None:intergenic 45.0%
!! TGAGGTTGAGGATGGGTTTT+GGG + tig0030662:473-492 None:intergenic 45.0%
!! ATGAGGTTGAGGATGGGTTT+TGG + tig0030662:474-493 None:intergenic 45.0%
!!! TTTGAGTTTTGGGGAGGTGA+AGG + tig0030662:511-530 None:intergenic 45.0%
GGAGAAATAGTCGAACACCT+TGG + tig0030662:703-722 None:intergenic 45.0%
TTCAGCGATGAGTTTGCGTT+TGG + tig0030662:748-767 None:intergenic 45.0%
!! GGAAGTTTTGTGTGTGTGGT+TGG + tig0030662:791-810 None:intergenic 45.0%
TTCTGTTTGCTTCGATGAGG+AGG + tig0030662:818-837 None:intergenic 45.0%
CGATTCTGTTTGCTTCGATG+AGG + tig0030662:821-840 None:intergenic 45.0%
GGTGTCTTCAGTGGTGAAAT+TGG - tig0030662:911-930 Msa1444130:CDS 45.0%
TTTAGCGCAGATTGCGAAAC+AGG - tig0030662:944-963 Msa1444130:CDS 45.0%
TGCTCTTGATCCAAGTTTGG+TGG - tig0030662:1007-1026 Msa1444130:CDS 45.0%
! TCTTGATCCAAGTTTGGTGG+CGG - tig0030662:1010-1029 Msa1444130:CDS 45.0%
! TTTGGAGTAGATTGAGGCTG+TGG + tig0030662:421-440 None:intergenic 45.0%
!!! TGTGGTTTTGGGGATTGGTT+TGG + tig0030662:439-458 None:intergenic 45.0%
!!! GTTGTTGTGGTTTTGGGGAT+TGG + tig0030662:444-463 None:intergenic 45.0%
!! TGAGGGTTGTTGTGGTTTTG+GGG + tig0030662:449-468 None:intergenic 45.0%
! GTGAGGGTTGTTGTGGTTTT+GGG + tig0030662:450-469 None:intergenic 45.0%
!! TGAGGTTGAGGATGGGTTTT+GGG + tig0030662:473-492 None:intergenic 45.0%
!! ATGAGGTTGAGGATGGGTTT+TGG + tig0030662:474-493 None:intergenic 45.0%
!!! TTTGAGTTTTGGGGAGGTGA+AGG + tig0030662:511-530 None:intergenic 45.0%
GGAGAAATAGTCGAACACCT+TGG + tig0030662:703-722 None:intergenic 45.0%
TTCAGCGATGAGTTTGCGTT+TGG + tig0030662:748-767 None:intergenic 45.0%
!! GGAAGTTTTGTGTGTGTGGT+TGG + tig0030662:791-810 None:intergenic 45.0%
TTCTGTTTGCTTCGATGAGG+AGG + tig0030662:818-837 None:intergenic 45.0%
CGATTCTGTTTGCTTCGATG+AGG + tig0030662:821-840 None:intergenic 45.0%
GGTGTCTTCAGTGGTGAAAT+TGG - tig0030662:911-930 Msa1444130:CDS 45.0%
TTTAGCGCAGATTGCGAAAC+AGG - tig0030662:944-963 Msa1444130:CDS 45.0%
TGCTCTTGATCCAAGTTTGG+TGG - tig0030662:1007-1026 Msa1444130:CDS 45.0%
! TCTTGATCCAAGTTTGGTGG+CGG - tig0030662:1010-1029 Msa1444130:CDS 45.0%
! GGTGAGGGTTGTTGTGGTTT+TGG + tig0030662:451-470 None:intergenic 50.0%
!!! TTTTGGGGTGAGGGTTGTTG+TGG + tig0030662:457-476 None:intergenic 50.0%
!! GAGGTTGAGGATGGGTTTTG+GGG + tig0030662:472-491 None:intergenic 50.0%
GAGAGGATGAGGTTGAGGAT+GGG + tig0030662:480-499 None:intergenic 50.0%
!!! GGAGAGTTTGAGTTTTGGGG+AGG + tig0030662:517-536 None:intergenic 50.0%
!! GTCGAGGGTGTTGTTGGATT+TGG + tig0030662:634-653 None:intergenic 50.0%
! GATTTTGTCGATGTCAGCGG+TGG + tig0030662:661-680 None:intergenic 50.0%
AGAACTCTTCACTGACCCCA+AGG - tig0030662:683-702 Msa1444130:CDS 50.0%
GGAGTCTTCGATAATTGGGC+TGG + tig0030662:724-743 None:intergenic 50.0%
AGCGATGAGTTTGCGTTTGG+TGG + tig0030662:745-764 None:intergenic 50.0%
TGTGTGTGGTTGGAAGCTAG+AGG + tig0030662:781-800 None:intergenic 50.0%
TTGCTTCGATGAGGAGGTTG+AGG + tig0030662:812-831 None:intergenic 50.0%
CGAATTCTCTCACGATGTCG+AGG + tig0030662:851-870 None:intergenic 50.0%
!! AACCGACACAGAGCTTGTTG+TGG - tig0030662:890-909 Msa1444130:CDS 50.0%
CACCACAACAAGCTCTGTGT+CGG + tig0030662:895-914 None:intergenic 50.0%
!! GCTTGTTGTGGTGTCTTCAG+TGG - tig0030662:902-921 Msa1444130:CDS 50.0%
! CTTGATCCAAGTTTGGTGGC+GGG - tig0030662:1011-1030 Msa1444130:CDS 50.0%
GTAAAACCCGCCACCAAACT+TGG + tig0030662:1020-1039 None:intergenic 50.0%
! CGGGTTTTACCGTCAGGTAT+GGG - tig0030662:1030-1049 Msa1444130:CDS 50.0%
ACCGTCAGGTATGGGAATTC+TGG - tig0030662:1038-1057 Msa1444130:CDS 50.0%
CCCAGAATTCCCATACCTGA+CGG + tig0030662:1042-1061 None:intergenic 50.0%
CCGTCAGGTATGGGAATTCT+GGG - tig0030662:1039-1058 Msa1444130:CDS 50.0%
! GGTGAGGGTTGTTGTGGTTT+TGG + tig0030662:451-470 None:intergenic 50.0%
!!! TTTTGGGGTGAGGGTTGTTG+TGG + tig0030662:457-476 None:intergenic 50.0%
!! GAGGTTGAGGATGGGTTTTG+GGG + tig0030662:472-491 None:intergenic 50.0%
GAGAGGATGAGGTTGAGGAT+GGG + tig0030662:480-499 None:intergenic 50.0%
!!! GGAGAGTTTGAGTTTTGGGG+AGG + tig0030662:517-536 None:intergenic 50.0%
!! GTCGAGGGTGTTGTTGGATT+TGG + tig0030662:634-653 None:intergenic 50.0%
! GATTTTGTCGATGTCAGCGG+TGG + tig0030662:661-680 None:intergenic 50.0%
AGAACTCTTCACTGACCCCA+AGG - tig0030662:683-702 Msa1444130:CDS 50.0%
GGAGTCTTCGATAATTGGGC+TGG + tig0030662:724-743 None:intergenic 50.0%
AGCGATGAGTTTGCGTTTGG+TGG + tig0030662:745-764 None:intergenic 50.0%
TGTGTGTGGTTGGAAGCTAG+AGG + tig0030662:781-800 None:intergenic 50.0%
TTGCTTCGATGAGGAGGTTG+AGG + tig0030662:812-831 None:intergenic 50.0%
CGAATTCTCTCACGATGTCG+AGG + tig0030662:851-870 None:intergenic 50.0%
!! AACCGACACAGAGCTTGTTG+TGG - tig0030662:890-909 Msa1444130:CDS 50.0%
CACCACAACAAGCTCTGTGT+CGG + tig0030662:895-914 None:intergenic 50.0%
!! GCTTGTTGTGGTGTCTTCAG+TGG - tig0030662:902-921 Msa1444130:CDS 50.0%
! CTTGATCCAAGTTTGGTGGC+GGG - tig0030662:1011-1030 Msa1444130:CDS 50.0%
GTAAAACCCGCCACCAAACT+TGG + tig0030662:1020-1039 None:intergenic 50.0%
! CGGGTTTTACCGTCAGGTAT+GGG - tig0030662:1030-1049 Msa1444130:CDS 50.0%
ACCGTCAGGTATGGGAATTC+TGG - tig0030662:1038-1057 Msa1444130:CDS 50.0%
CCCAGAATTCCCATACCTGA+CGG + tig0030662:1042-1061 None:intergenic 50.0%
CCGTCAGGTATGGGAATTCT+GGG - tig0030662:1039-1058 Msa1444130:CDS 50.0%
!!! GAGGATGGGTTTTGGGGTGA+GGG + tig0030662:466-485 None:intergenic 55.0%
!!! TGAGGATGGGTTTTGGGGTG+AGG + tig0030662:467-486 None:intergenic 55.0%
GGAGAGGATGAGGTTGAGGA+TGG + tig0030662:481-500 None:intergenic 55.0%
!!! GAGTTTTGGGGAGGTGAAGG+TGG + tig0030662:508-527 None:intergenic 55.0%
GGCTAAATCGGCTAATGCGG+TGG + tig0030662:613-632 None:intergenic 55.0%
TTTGTCGATGTCAGCGGTGG+TGG + tig0030662:658-677 None:intergenic 55.0%
TCACAGGGGCGAAGAATGTG+AGG - tig0030662:976-995 Msa1444130:CDS 55.0%
! GCGGGTTTTACCGTCAGGTA+TGG - tig0030662:1029-1048 Msa1444130:CDS 55.0%
!!! GAGGATGGGTTTTGGGGTGA+GGG + tig0030662:466-485 None:intergenic 55.0%
!!! TGAGGATGGGTTTTGGGGTG+AGG + tig0030662:467-486 None:intergenic 55.0%
GGAGAGGATGAGGTTGAGGA+TGG + tig0030662:481-500 None:intergenic 55.0%
!!! GAGTTTTGGGGAGGTGAAGG+TGG + tig0030662:508-527 None:intergenic 55.0%
GGCTAAATCGGCTAATGCGG+TGG + tig0030662:613-632 None:intergenic 55.0%
TTTGTCGATGTCAGCGGTGG+TGG + tig0030662:658-677 None:intergenic 55.0%
TCACAGGGGCGAAGAATGTG+AGG - tig0030662:976-995 Msa1444130:CDS 55.0%
! GCGGGTTTTACCGTCAGGTA+TGG - tig0030662:1029-1048 Msa1444130:CDS 55.0%
TGCGGGAGAGGATGAGGTTG+AGG + tig0030662:485-504 None:intergenic 60.0%
TTGGGGAGGTGAAGGTGGTG+CGG + tig0030662:503-522 None:intergenic 60.0%
AAAACCAAACCCCGCCGCAC+CGG - tig0030662:537-556 Msa1444130:CDS 60.0%
TAATGCGGTGGCGTAGCTGG+CGG + tig0030662:601-620 None:intergenic 60.0%
!!! TGGTGGCGGGTTTTACCGTC+AGG - tig0030662:1024-1043 Msa1444130:CDS 60.0%
TGCGGGAGAGGATGAGGTTG+AGG + tig0030662:485-504 None:intergenic 60.0%
TTGGGGAGGTGAAGGTGGTG+CGG + tig0030662:503-522 None:intergenic 60.0%
AAAACCAAACCCCGCCGCAC+CGG - tig0030662:537-556 Msa1444130:CDS 60.0%
TAATGCGGTGGCGTAGCTGG+CGG + tig0030662:601-620 None:intergenic 60.0%
!!! TGGTGGCGGGTTTTACCGTC+AGG - tig0030662:1024-1043 Msa1444130:CDS 60.0%
AGGTGGTGCGGGAGAGGATG+AGG + tig0030662:491-510 None:intergenic 65.0%
AGGTGAAGGTGGTGCGGGAG+AGG + tig0030662:497-516 None:intergenic 65.0%
TGGGGAGGTGAAGGTGGTGC+GGG + tig0030662:502-521 None:intergenic 65.0%
!! GGTGCGGCGGGGTTTGGTTT+TGG + tig0030662:538-557 None:intergenic 65.0%
GGCGGCTGGGGAGTTCATTG+TGG + tig0030662:580-599 None:intergenic 65.0%
GGCTAATGCGGTGGCGTAGC+TGG + tig0030662:604-623 None:intergenic 65.0%
!! GGTGGCGTCGAGGGTGTTGT+TGG + tig0030662:640-659 None:intergenic 65.0%
AGGTGGTGCGGGAGAGGATG+AGG + tig0030662:491-510 None:intergenic 65.0%
AGGTGAAGGTGGTGCGGGAG+AGG + tig0030662:497-516 None:intergenic 65.0%
TGGGGAGGTGAAGGTGGTGC+GGG + tig0030662:502-521 None:intergenic 65.0%
!! GGTGCGGCGGGGTTTGGTTT+TGG + tig0030662:538-557 None:intergenic 65.0%
GGCGGCTGGGGAGTTCATTG+TGG + tig0030662:580-599 None:intergenic 65.0%
GGCTAATGCGGTGGCGTAGC+TGG + tig0030662:604-623 None:intergenic 65.0%
!! GGTGGCGTCGAGGGTGTTGT+TGG + tig0030662:640-659 None:intergenic 65.0%
! GTCAGCGGTGGTGGCGTCGA+GGG + tig0030662:649-668 None:intergenic 70.0%
! TGTCAGCGGTGGTGGCGTCG+AGG + tig0030662:650-669 None:intergenic 70.0%
! GTCAGCGGTGGTGGCGTCGA+GGG + tig0030662:649-668 None:intergenic 70.0%
! TGTCAGCGGTGGTGGCGTCG+AGG + tig0030662:650-669 None:intergenic 70.0%
ACCAAACCCCGCCGCACCGG+CGG - tig0030662:540-559 Msa1444130:CDS 75.0%
CAAGTGCGCCACCGCCGGTG+CGG + tig0030662:554-573 None:intergenic 75.0%
GGAGCCAAGTGCGCCACCGC+CGG + tig0030662:559-578 None:intergenic 75.0%
TGGCGTAGCTGGCGGCGGCT+GGG + tig0030662:593-612 None:intergenic 75.0%
TGCGGTGGCGTAGCTGGCGG+CGG + tig0030662:598-617 None:intergenic 75.0%
ACCAAACCCCGCCGCACCGG+CGG - tig0030662:540-559 Msa1444130:CDS 75.0%
CAAGTGCGCCACCGCCGGTG+CGG + tig0030662:554-573 None:intergenic 75.0%
GGAGCCAAGTGCGCCACCGC+CGG + tig0030662:559-578 None:intergenic 75.0%
TGGCGTAGCTGGCGGCGGCT+GGG + tig0030662:593-612 None:intergenic 75.0%
TGCGGTGGCGTAGCTGGCGG+CGG + tig0030662:598-617 None:intergenic 75.0%
! ACCGCCGGTGCGGCGGGGTT+TGG + tig0030662:544-563 None:intergenic 80.0%
!! AAACCCCGCCGCACCGGCGG+TGG - tig0030662:543-562 Msa1444130:CDS 80.0%
!! CGCACCGGCGGTGGCGCACT+TGG - tig0030662:552-571 Msa1444130:CDS 80.0%
! GGCGTAGCTGGCGGCGGCTG+GGG + tig0030662:592-611 None:intergenic 80.0%
! GTGGCGTAGCTGGCGGCGGC+TGG + tig0030662:594-613 None:intergenic 80.0%
! ACCGCCGGTGCGGCGGGGTT+TGG + tig0030662:544-563 None:intergenic 80.0%
!! AAACCCCGCCGCACCGGCGG+TGG - tig0030662:543-562 Msa1444130:CDS 80.0%
!! CGCACCGGCGGTGGCGCACT+TGG - tig0030662:552-571 Msa1444130:CDS 80.0%
! GGCGTAGCTGGCGGCGGCTG+GGG + tig0030662:592-611 None:intergenic 80.0%
! GTGGCGTAGCTGGCGGCGGC+TGG + tig0030662:594-613 None:intergenic 80.0%
! TGCGCCACCGCCGGTGCGGC+GGG + tig0030662:550-569 None:intergenic 85.0%
! GTGCGCCACCGCCGGTGCGG+CGG + tig0030662:551-570 None:intergenic 85.0%
! TGCGCCACCGCCGGTGCGGC+GGG + tig0030662:550-569 None:intergenic 85.0%
! GTGCGCCACCGCCGGTGCGG+CGG + tig0030662:551-570 None:intergenic 85.0%
! GCGCCACCGCCGGTGCGGCG+GGG + tig0030662:549-568 None:intergenic 90.0%
! GCGCCACCGCCGGTGCGGCG+GGG + tig0030662:549-568 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
tig0030662 gene 399 1148 399 ID=Msa1444130;Name=Msa1444130
tig0030662 mRNA 399 1148 399 ID=Msa1444130-mRNA-1;Parent=Msa1444130;Name=Msa1444130-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|249
tig0030662 exon 399 1148 399 ID=Msa1444130-mRNA-1:exon:14349;Parent=Msa1444130-mRNA-1
tig0030662 CDS 399 1148 399 ID=Msa1444130-mRNA-1:cds;Parent=Msa1444130-mRNA-1
Gene Sequence

>Msa1444130

ATGGCGTCTCTACAACACACCACAGCCTCAATCTACTCCAAACCAATCCCCAAAACCACAACAACCCTCACCCCAAAACCCATCCTCAACCTCATCCTCTCCCGCACCACCTTCACCTCCCCAAAACTCAAACTCTCCAAAACCAAACCCCGCCGCACCGGCGGTGGCGCACTTGGCTCCACAATGAACTCCCCAGCCGCCGCCAGCTACGCCACCGCATTAGCCGATTTAGCCAAATCCAACAACACCCTCGACGCCACCACCGCTGACATCGACAAAATCGAAGAACTCTTCACTGACCCCAAGGTGTTCGACTATTTCTCCAGCCCAATTATCGAAGACTCCACCAAACGCAAACTCATCGCTGAATTCGCTACTTCCTCTAGCTTCCAACCACACACACAAAACTTCCTCAACCTCCTCATCGAAGCAAACAGAATCGACATCATCCTCGACATCGTGAGAGAATTCGAACTTCATTACAATACTCTAACCGACACAGAGCTTGTTGTGGTGTCTTCAGTGGTGAAATTGGAGTCACAGCATTTAGCGCAGATTGCGAAACAGGTTCAAAAACTCACAGGGGCGAAGAATGTGAGGATTAAAACTGCTCTTGATCCAAGTTTGGTGGCGGGTTTTACCGTCAGGTATGGGAATTCTGGGTCTAAGTTTATTGATATGAGTGTTAAGAAGAAACTTGAGGAAATTGCTGCTCAACTTGATTTGGGTGATATCAAACTTGCTGCATGA

Protein sequence

>Msa1444130

MASLQHTTASIYSKPIPKTTTTLTPKPILNLILSRTTFTSPKLKLSKTKPRRTGGGALGSTMNSPAAASYATALADLAKSNNTLDATTADIDKIEELFTDPKVFDYFSSPIIEDSTKRKLIAEFATSSSFQPHTQNFLNLLIEANRIDIILDIVREFELHYNTLTDTELVVVSSVVKLESQHLAQIAKQVQKLTGAKNVRIKTALDPSLVAGFTVRYGNSGSKFIDMSVKKKLEEIAAQLDLGDIKLAA*