AlfalfaGEDB | Msa0809950

M. sativa cultivar zhongmu-4 / Msa0809950

KEGG: -
GO: GO:0000003 GO:0000323 GO:0002165 GO:0003006 GO:0003376 GO:0003674 GO:0005215 GO:0005319 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005770 GO:0005773 GO:0005774 GO:0006810 GO:0006869 GO:0006897 GO:0006915 GO:0006928 GO:0006950 GO:0006996 GO:0007033 GO:0007034 GO:0007040 GO:0007041 GO:0007154 GO:0007165 GO:0007186 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007399 GO:0007416 GO:0007417 GO:0007528 GO:0007610 GO:0007617 GO:0007618 GO:0007619 GO:0008150 GO:0008219 GO:0008333 GO:0008347 GO:0008582 GO:0009267 GO:0009605 GO:0009653 GO:0009791 GO:0009886 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010001 GO:0010008 GO:0010623 GO:0010646 GO:0010648 GO:0010876 GO:0010941 GO:0012501 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016477 GO:0019098 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031090 GO:0031410 GO:0031667 GO:0031668 GO:0031669 GO:0031902 GO:0031982 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0033554 GO:0035193 GO:0036465 GO:0040007 GO:0040008 GO:0040011 GO:0042063 GO:0042594 GO:0042981 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045476 GO:0045477 GO:0045595 GO:0045924 GO:0046624 GO:0046907 GO:0048468 GO:0048477 GO:0048488 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048609 GO:0048638 GO:0048731 GO:0048856 GO:0048869 GO:0048870 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050807 GO:0050808 GO:0050896 GO:0051124 GO:0051128 GO:0051179 GO:0051234 GO:0051239 GO:0051641 GO:0051649 GO:0051674 GO:0051704 GO:0051716 GO:0051960 GO:0051963 GO:0060180 GO:0060284 GO:0065007 GO:0065008 GO:0071496 GO:0071702 GO:0071840 GO:0080171 GO:0090092 GO:0090097 GO:0090099 GO:0090101 GO:0090520 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098852 GO:0099003 GO:0099504 GO:1902742 GO:1904396 GO:1904748 GO:1905879 GO:2000026 GO:2000241
PFAM: PF07690.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0809950	XP_003615076.1	98.814	506	6	0	1	506	1	506	0.0	1013

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0809950	G7KAD2	98.814	506	6	0	1	506	1	506	0.0	1013

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0024490	Msa0809950	-0.801337	9.442769e-49	-8.615850e-47
Msa0053260	Msa0809950	-0.808767	2.634910e-50	-8.615850e-47
Msa0098500	Msa0809950	-0.802152	6.424933e-49	-8.615850e-47
Msa0183960	Msa0809950	-0.807750	4.339061e-50	-8.615850e-47
Msa0216150	Msa0809950	-0.819924	8.993903e-53	-8.615850e-47
Msa0254640	Msa0809950	0.804139	2.493716e-49	-8.615850e-47
Msa0294200	Msa0809950	0.801439	9.000939e-49	-8.615850e-47
Msa0319680	Msa0809950	0.801741	7.802901e-49	-8.615850e-47
Msa0364030	Msa0809950	-0.800107	1.683313e-48	-8.615850e-47
Msa0375930	Msa0809950	-0.800344	1.506145e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0809950	MtrunA17_Chr5g0425781	98.814	506	6	0	1	506	1	506	0.0	1013
Msa0809950	MtrunA17_Chr8g0382381	69.709	515	136	3	1	497	2	514	0.0	726
Msa0809950	MtrunA17_Chr8g0382331	68.119	505	145	2	1	493	1	501	0.0	690
Msa0809950	MtrunA17_Chr8g0382321	67.068	498	148	5	1	497	2	484	0.0	630
Msa0809950	MtrunA17_Chr5g0403601	41.542	467	251	5	5	459	38	494	3.12e-110	336

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0809950	AT1G78130.1	76.778	478	104	3	1	474	1	475	0.0	728
Msa0809950	AT5G10190.1	69.076	498	141	3	1	498	1	485	0.0	709
Msa0809950	AT5G10190.2	72.126	348	93	1	1	348	1	344	0.0	513
Msa0809950	AT5G10190.3	62.331	369	126	3	130	498	1	356	4.23e-168	479
Msa0809950	AT4G36790.1	43.506	462	239	6	5	459	42	488	8.96e-122	366
Msa0809950	AT2G18590.1	37.284	464	265	7	12	459	19	472	1.57e-97	303

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Find 142 sgRNAs with CRISPR-Local

Find 429 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTTTCCTTTGGAACT+TGG	0.393994	5_3:-37760181	None:intergenic
AAAATTTCGTGTTTGCTTAG+TGG	0.384197	5_3:+37761562	Msa0809950:three_prime_UTR
AACAACTGAACCGAGATTTC+CGG	0.419784	5_3:-37759988	None:intergenic
AACAATCGTGGCATGGCTTT+TGG	0.262625	5_3:+37759951	Msa0809950:CDS
AAGAAAATATATTGCTCTAC+AGG	0.410601	5_3:+37761480	Msa0809950:CDS
AAGAAGCTTGAACAATGGAT+CGG	0.609290	5_3:-37756291	None:intergenic
AAGTCCGAGGAATTGTCTAT+TGG	0.454075	5_3:+37761422	Msa0809950:CDS
AAGTCTCTTTACACAGCAAT+AGG	0.390577	5_3:+37761263	Msa0809950:CDS
AAGTTCCAAAGGAAACATTT+TGG	0.400153	5_3:+37760183	Msa0809950:CDS
AATACATACTTATTTGTAGC+AGG	0.492841	5_3:-37760608	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTTCTGATTTCATCTCATA+TGG	-	chr5_3:37756139-37756158	None:intergenic	30.0%
AAGAAAGGAAAACCATAGAA+GGG	-	chr5_3:37756511-37756530	None:intergenic	30.0%
GATTAGAATGTTAGGAAACA+TGG	+	chr5_3:37756641-37756660	Msa0809950:intron	30.0%
AACACCTTAAGCCTATATAT+AGG	+	chr5_3:37756753-37756772	Msa0809950:intron	30.0%
GTTAGTTAGTGCCTATATAT+AGG	-	chr5_3:37756767-37756786	None:intergenic	30.0%
CATATATTGTTGGATAGTGT+TGG	-	chr5_3:37757477-37757496	None:intergenic	30.0%
CAACACTATCCAACAATATA+TGG	+	chr5_3:37757475-37757494	Msa0809950:intron	30.0%
ATTCTCACAAGTAGTTTAGT+TGG	-	chr5_3:37757552-37757571	None:intergenic	30.0%
AAGAAGTTCTCATTACACAA+TGG	+	chr5_3:37757691-37757710	Msa0809950:intron	30.0%
TATCTGCCTCTAATAATAAC+CGG	+	chr5_3:37757761-37757780	Msa0809950:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	37756020	37761787	37756020	ID=Msa0809950;Name=Msa0809950
chr5_3	mRNA	37756020	37761787	37756020	ID=Msa0809950-mRNA-1;Parent=Msa0809950;Name=Msa0809950-mRNA-1;_AED=0.01;_eAED=0.01;_QI=125\|1\|1\|1\|1\|1\|3\|255\|506
chr5_3	exon	37756020	37756432	37756020	ID=Msa0809950-mRNA-1:exon:11571;Parent=Msa0809950-mRNA-1
chr5_3	exon	37759864	37760621	37759864	ID=Msa0809950-mRNA-1:exon:11572;Parent=Msa0809950-mRNA-1
chr5_3	exon	37761058	37761787	37761058	ID=Msa0809950-mRNA-1:exon:11573;Parent=Msa0809950-mRNA-1
chr5_3	five_prime_UTR	37756020	37756144	37756020	ID=Msa0809950-mRNA-1:five_prime_utr;Parent=Msa0809950-mRNA-1
chr5_3	CDS	37756145	37756432	37756145	ID=Msa0809950-mRNA-1:cds;Parent=Msa0809950-mRNA-1
chr5_3	CDS	37759864	37760621	37759864	ID=Msa0809950-mRNA-1:cds;Parent=Msa0809950-mRNA-1
chr5_3	CDS	37761058	37761532	37761058	ID=Msa0809950-mRNA-1:cds;Parent=Msa0809950-mRNA-1
chr5_3	three_prime_UTR	37761533	37761787	37761533	ID=Msa0809950-mRNA-1:three_prime_utr;Parent=Msa0809950-mRNA-1

Gene Sequence

>Msa0809950

ATGAAATCAGAAACATTAACACTTGTTTTGGTGAACCTAGCTGGAATAATGGAAAAAGCAGACGAGTCATTACTCCCCGGTGTATACAAAGAAGTTGGTGCTGCTCTTCATACTGACCCTACAGGACTCGGTTCGCTTACTCTCTTCCGATCCATTGTTCAAGCTTCTTGTTACCCAATTGCCGCGTACCTCGCCACGCGTCATAATCGTGCTCATGTTATTGCTCTTGGTGCTTTTCTTTGGGCTGCTGCGACTTTTCTTGTTGCCTTCTCCTCCACTTTCTTTCAGGTAGCAGTTTCACGAGGGTTAAATGGGATTGGTCTTGCACTTGTAACTCCTGCAATTCAGTCCCTAGTTGCAGACTCTACTGATGATAACAATCGTGGCATGGCTTTTGGATGGCTTCAACTAACCGGAAATCTCGGTTCAGTTGTTGGTGGCCTCTTCTCAGTGTTGATAGCTCCAATAACAGTCTTTGGTATCGCTGGTTGGAGAATTTCATTTCATGTTGTTGGATTAATAAGCATTATAGTTGGTACTTTAGTTTACATCTTTGCCAAAGATCCACATTTCGAAGATAAGGGCACGCTTGCAAAAGATAGCAACCAAGTTCCAAAGGAAACATTTTGGTCTGGAGTAAGAGATTTGTTTCAGGAAGCCAAATCGGTTACTAGGATTTCGTCTTTCCAGATAATTGTTGCGCAGGGTGTTACTGGCTCCTTTCCTTGGTCGGCTTTGTCGTTTGCGCCGATGTGGTTAGAGCTGACTGGCTTTTCACATGCAAAAACTGCTTTCCTCATAGCTTTGTTTGTGGTTGCAAGTTCTGTTGGCGGTTTGTTTGGTGGTAAGATGGGAGATATCCTTTCCAGGCATCTTCCAAATTCAGGGAGGATAATTCTAGCACAGATAAGCTCTGGATCCGCGATCCCCTTGGCAGCGATTCTTTTGCTGGGTTTACCAGATGATCCATCTACAGCATTGTCACATGGTTTGATGCTTGTCATTTTGGGGCTCTTTATATCTTGGAATGGTCCTGCTACAAATAATCCAATTTTTGCAGAGATAGTTCCAGAGAGATCCCGGACAAGTGTGTATGCATTAGATCGGTCTTTTGAGTCTATACTATCATCTTTTGCTCCTCCTGCAGTGGGAATTTTGTCTCAGCATGTTTACGGGTATAAGCCTATTCCCAAAGGATCTAGTGCATCTCAAGAGATTTTAACAGACCGAGAGAATGCTTCATCATTGGCAAAGTCTCTTTACACAGCAATAGGAATTCCAATGGCTCTATGCTGTTTAATCTATTCATTTCTTTATAAGACCTATCCGAGAGACAGAGAAAGAGCTAGGATGGAGGCTTTAATAGAATCGGAGATGCAGCATATTGAATCAGATGGGTTAGTCGTGGATAAGTCCGAGGAATTGTCTATTGGAGATTATGATGGTGATGGTGCTGATCTTGATGATGAAGAAAATATATTGCTCTACAGGCAGTTGACATTCTCCAACTTAGCTGATTAG

Protein sequence

>Msa0809950

MKSETLTLVLVNLAGIMEKADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLATRHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLALVTPAIQSLVADSTDDNNRGMAFGWLQLTGNLGSVVGGLFSVLIAPITVFGIAGWRISFHVVGLISIIVGTLVYIFAKDPHFEDKGTLAKDSNQVPKETFWSGVRDLFQEAKSVTRISSFQIIVAQGVTGSFPWSALSFAPMWLELTGFSHAKTAFLIALFVVASSVGGLFGGKMGDILSRHLPNSGRIILAQISSGSAIPLAAILLLGLPDDPSTALSHGLMLVILGLFISWNGPATNNPIFAEIVPERSRTSVYALDRSFESILSSFAPPAVGILSQHVYGYKPIPKGSSASQEILTDRENASSLAKSLYTAIGIPMALCCLIYSFLYKTYPRDRERARMEALIESEMQHIESDGLVVDKSEELSIGDYDGDGADLDDEENILLYRQLTFSNLAD*