AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0850460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0850460 MtrunA17_Chr5g0425781 98.617 506 7 0 1 506 1 506 0.0 1010
Msa0850460 MtrunA17_Chr8g0382381 69.515 515 137 3 1 497 2 514 0.0 724
Msa0850460 MtrunA17_Chr8g0382331 67.921 505 146 2 1 493 1 501 0.0 687
Msa0850460 MtrunA17_Chr8g0382321 67.068 498 148 5 1 497 2 484 0.0 629
Msa0850460 MtrunA17_Chr5g0403601 41.328 467 252 5 5 459 38 494 4.67e-109 333
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0850460 AT1G78130.1 76.778 478 104 3 1 474 1 475 0.0 726
Msa0850460 AT5G10190.1 69.076 498 141 3 1 498 1 485 0.0 711
Msa0850460 AT5G10190.2 72.126 348 93 1 1 348 1 344 0.0 514
Msa0850460 AT5G10190.3 62.331 369 126 3 130 498 1 356 1.18e-168 481
Msa0850460 AT4G36790.1 43.290 462 240 6 5 459 42 488 7.14e-121 363
Msa0850460 AT2G18590.1 37.687 467 259 8 12 459 19 472 2.23e-97 303

Find 147 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTCCTCCACTTTCTTTC+AGG 0.114164 5_4:+39537789 Msa0850460:CDS
TGGTTTGATGCTTGTCATTT+TGG 0.163962 5_4:+39539599 Msa0850460:CDS
AGAATTATCCTCCCTGAATT+TGG 0.189354 5_4:-39539489 None:intergenic
TCCAGGCATCTTCCAAATTC+AGG 0.202141 5_4:+39539477 Msa0850460:CDS
ATCTTGATGGGTTGGGAAAT+TGG 0.204748 5_4:-39537421 None:intergenic
GCAGTTTCGCGAGGGTTAAA+TGG 0.238465 5_4:+39538904 Msa0850460:CDS
GCGATACCAAAGACTGTTAT+TGG 0.248840 5_4:-39539075 None:intergenic
AACAATCGTGGCATGGCTTT+TGG 0.262625 5_4:+39538988 Msa0850460:CDS
ATCTTCGAAATGTGGATCTT+TGG 0.269283 5_4:-39539169 None:intergenic
ATTGTTGCACAGGGTGTTAC+TGG 0.276865 5_4:+39539306 Msa0850460:CDS
CGAAATCCTAGTAACCAATT+TGG 0.282082 5_4:-39539271 None:intergenic
TCTTGATGGGTTGGGAAATT+GGG 0.309599 5_4:-39537420 None:intergenic
CACCCTGTGCAACAATTATC+TGG 0.310837 5_4:-39539299 None:intergenic
ATTCTCCAACTTAGCTGATT+AGG 0.317353 5_4:+39540548 Msa0850460:CDS
ATAGCTCCAATAACAGTCTT+TGG 0.331343 5_4:+39539069 Msa0850460:CDS
TTGAGATGCACTAGATCCTT+TGG 0.331702 5_4:-39540238 None:intergenic
GTGGCGAGGTACGCGGCAAT+TGG 0.336066 5_4:-39537697 None:intergenic
TGGAGTAAGAGATTTGTTTC+AGG 0.338181 5_4:+39539245 Msa0850460:CDS
AGAATTTCATTTCATGTTGT+TGG 0.340210 5_4:+39539105 Msa0850460:CDS
GTTTCTGATTTCATCTCATA+TGG 0.344154 5_4:-39537514 None:intergenic
GATGACAATGTAAATTTATA+TGG 0.344686 5_4:+39540796 Msa0850460:three_prime_UTR
GCACTAGATCCTTTGGGAAT+AGG 0.348016 5_4:-39540231 None:intergenic
AGGAAGCCAAATTGGTTACT+AGG 0.351167 5_4:+39539265 Msa0850460:CDS
CGGTTTGTTTGGTGGTAAGA+TGG 0.354936 5_4:+39539443 Msa0850460:CDS
CCAGACCAAAATGTTTCCTT+TGG 0.360236 5_4:-39539225 None:intergenic
TTTGTTTCAGGAAGCCAAAT+TGG 0.377141 5_4:+39539257 Msa0850460:CDS
GTTCTATTACAATCCATGTT+TGG 0.379424 5_4:-39540666 None:intergenic
AAAATTTCGTGTTTGCTTAG+TGG 0.384197 5_4:+39540599 Msa0850460:three_prime_UTR
GGTGAACCTAGCTGGAATAA+TGG 0.387038 5_4:+39537552 Msa0850460:CDS
AAGTCTCTTTACACAGCAAT+AGG 0.390577 5_4:+39540300 Msa0850460:CDS
GCAACTAGGGACTGAATTGC+AGG 0.392494 5_4:-39538949 None:intergenic
AAAATGTTTCCTTTGGAACT+TGG 0.393994 5_4:-39539218 None:intergenic
TGGGAAATTGGGAGTTTGAC+TGG 0.396796 5_4:-39537409 None:intergenic
CCAGGCATCTTCCAAATTCA+GGG 0.398791 5_4:+39539478 Msa0850460:CDS
AAGTTCCAAAGGAAACATTT+TGG 0.400153 5_4:+39539220 Msa0850460:CDS
CCATGTGACAATGCTGTAGA+TGG 0.404429 5_4:-39539579 None:intergenic
GTGTTACTGGTTCCTTTCCT+TGG 0.407195 5_4:+39539319 Msa0850460:CDS
AAGAAAATATATTGCTCTAC+AGG 0.410601 5_4:+39540517 Msa0850460:CDS
AGAAACATTAACACTTGTTC+TGG 0.412465 5_4:+39537531 Msa0850460:CDS
TGAGATGCACTAGATCCTTT+GGG 0.413888 5_4:-39540237 None:intergenic
AGTTCTGTTGGCGGTTTGTT+TGG 0.415841 5_4:+39539432 Msa0850460:CDS
TACTGGTTCCTTTCCTTGGT+CGG 0.418609 5_4:+39539323 Msa0850460:CDS
ATCAGTAGAGTCTGCAACTA+GGG 0.418717 5_4:-39538962 None:intergenic
AACAACTGAACCGAGATTTC+CGG 0.419784 5_4:-39539025 None:intergenic
TTTAGAAATCTTGATGGGTT+GGG 0.420453 5_4:-39537428 None:intergenic
CGTGCTCATGTTATTGCTCT+TGG 0.420574 5_4:+39537730 Msa0850460:CDS
TTTGGATGGCTTCAACTAAC+CGG 0.430482 5_4:+39539006 Msa0850460:CDS
CAGTTTCGCGAGGGTTAAAT+GGG 0.432134 5_4:+39538905 Msa0850460:CDS
GTTTAGAAATCTTGATGGGT+TGG 0.432186 5_4:-39537429 None:intergenic
GGATTAATAAGCATTATAGT+TGG 0.436151 5_4:+39539126 Msa0850460:CDS
AGATCCACATTTCGAAGATA+AGG 0.439343 5_4:+39539173 Msa0850460:CDS
CAATGTAAATTTATATGGTC+TGG 0.440457 5_4:+39540801 Msa0850460:three_prime_UTR
GGGAAATTGGGAGTTTGACT+GGG 0.441250 5_4:-39537408 None:intergenic
CCCTGAATTTGGAAGATGCC+TGG 0.441254 5_4:-39539478 None:intergenic
CTAATGCATACACACTTGTC+CGG 0.443519 5_4:-39540128 None:intergenic
AATGACCTAATCAGCTAAGT+TGG 0.447237 5_4:-39540553 None:intergenic
GGAAATCTCGGTTCAGTTGT+TGG 0.447400 5_4:+39539027 Msa0850460:CDS
TGATGGTTTAGAAATCTTGA+TGG 0.447501 5_4:-39537434 None:intergenic
ACACTTGTCCGGGATCTCTC+TGG 0.448101 5_4:-39540117 None:intergenic
ATAAGTGAAAGATAAAACTA+TGG 0.449330 5_4:-39540720 None:intergenic
AAGTCCGAGGAATTGTCTAT+TGG 0.454075 5_4:+39540459 Msa0850460:CDS
AGATGGGAGATATCCTTTCC+AGG 0.454599 5_4:+39539460 Msa0850460:CDS
CTTGTTCTGGTGAACCTAGC+TGG 0.454878 5_4:+39537544 Msa0850460:CDS
TTTCCTCATAGCTTTGTTTG+TGG 0.459951 5_4:+39539404 Msa0850460:CDS
CCGAGAGAATGCTTCATCAT+TGG 0.462160 5_4:+39540275 Msa0850460:CDS
TTTCCAGATAATTGTTGCAC+AGG 0.468519 5_4:+39539296 Msa0850460:CDS
TGGCGAGGTACGCGGCAATT+GGG 0.470863 5_4:-39537696 None:intergenic
GATCCACATTTCGAAGATAA+GGG 0.476377 5_4:+39539174 Msa0850460:CDS
GGGCTCTTTATATCTTGGAA+TGG 0.479081 5_4:+39539621 Msa0850460:CDS
AGATAGTTCCAGAGAGATCC+CGG 0.480678 5_4:+39540109 Msa0850460:CDS
ATAACAGTCTTTGGTATCGC+TGG 0.482588 5_4:+39539078 Msa0850460:CDS
GGTTTGTTTGGTGGTAAGAT+GGG 0.486167 5_4:+39539444 Msa0850460:CDS
TCGCGAGGGTTAAATGGGAT+TGG 0.488492 5_4:+39538910 Msa0850460:CDS
ATTAAACAGCATAGAGCCAT+TGG 0.492469 5_4:-39540327 None:intergenic
AATACATACTTATTTGTAGC+AGG 0.492841 5_4:-39539645 None:intergenic
CATTCAAAAGTTTATAGAGA+AGG 0.500746 5_4:+39540572 Msa0850460:three_prime_UTR
GATGGAGGCTTTAATAGAAT+CGG 0.503156 5_4:+39540398 Msa0850460:CDS
CTCTGGATCCGCGATCCCCT+TGG 0.505511 5_4:+39539524 Msa0850460:CDS
ATTCTAGCACAGATAAGCTC+TGG 0.506952 5_4:+39539507 Msa0850460:CDS
CATCAGTAGAGTCTGCAACT+AGG 0.509031 5_4:-39538963 None:intergenic
ATGCATTACCTGAAAGAAAG+TGG 0.511225 5_4:-39537797 None:intergenic
TCTTTCTCTGTCTCTCGGAT+AGG 0.515677 5_4:-39540370 None:intergenic
CCAACTTCTTTGTATACACC+GGG 0.516438 5_4:-39537598 None:intergenic
ATTCAAAAGTTTATAGAGAA+GGG 0.517026 5_4:+39540573 Msa0850460:three_prime_UTR
AATGCTGTAGATGGATCATC+TGG 0.517085 5_4:-39539570 None:intergenic
AGACAGAGAAAGAGCTAGGA+TGG 0.519279 5_4:+39540380 Msa0850460:CDS
TCTGTTGGCGGTTTGTTTGG+TGG 0.520282 5_4:+39539435 Msa0850460:CDS
CAGCAAAAGAATCGCTGCCA+AGG 0.521565 5_4:-39539541 None:intergenic
CTAGCTCTTTCTCTGTCTCT+CGG 0.528162 5_4:-39540375 None:intergenic
ACCAACTTCTTTGTATACAC+CGG 0.530901 5_4:-39537599 None:intergenic
TTGTCTATTGGAGATTATGA+TGG 0.531968 5_4:+39540471 Msa0850460:CDS
ATGCAGCATATTGAATCAGA+TGG 0.533581 5_4:+39540423 Msa0850460:CDS
GTAAGAGAACCGAGTCCTGT+AGG 0.534030 5_4:-39537640 None:intergenic
TTTGTGGTTGCAAGTTCTGT+TGG 0.534891 5_4:+39539420 Msa0850460:CDS
ATTTCGTGTTTGCTTAGTGG+TGG 0.536496 5_4:+39540602 Msa0850460:three_prime_UTR
CGAGAGACAGAGAAAGAGCT+AGG 0.537790 5_4:+39540376 Msa0850460:CDS
GATGGTTTAGAAATCTTGAT+GGG 0.539183 5_4:-39537433 None:intergenic
TAAGAGAACCGAGTCCTGTA+GGG 0.540280 5_4:-39537639 None:intergenic
GTGGTTGCAAGTTCTGTTGG+CGG 0.543374 5_4:+39539423 Msa0850460:CDS
AGCAAAAGAATCGCTGCCAA+GGG 0.555323 5_4:-39539540 None:intergenic
CTTCAACTAACCGGAAATCT+CGG 0.558373 5_4:+39539015 Msa0850460:CDS
ATCTCCAATAGACAATTCCT+CGG 0.558786 5_4:-39540463 None:intergenic
CTGAAAGAAAGTGGAGGAGA+AGG 0.560090 5_4:-39537788 None:intergenic
TGAGACAAAATTCCCACTGC+AGG 0.563509 5_4:-39540189 None:intergenic
CCCGGTGTATACAAAGAAGT+TGG 0.563732 5_4:+39537598 Msa0850460:CDS
CATACTGACCCTACAGGACT+CGG 0.564862 5_4:+39537631 Msa0850460:CDS
CCAATGATGAAGCATTCTCT+CGG 0.572353 5_4:-39540275 None:intergenic
GACAAAATTCCCACTGCAGG+AGG 0.575397 5_4:-39540186 None:intergenic
CAGTCTTTGGTATCGCTGGT+TGG 0.575840 5_4:+39539082 Msa0850460:CDS
CCGATGTGGTTAGAGCTGAC+TGG 0.580559 5_4:+39539360 Msa0850460:CDS
TAATGCATACACACTTGTCC+GGG 0.580587 5_4:-39540127 None:intergenic
GCTCTTCATACTGACCCTAC+AGG 0.582844 5_4:+39537625 Msa0850460:CDS
AATCTCGGTTCAGTTGTTGG+TGG 0.587237 5_4:+39539030 Msa0850460:CDS
TTGTGTACAGTGTTATACAT+AGG 0.588288 5_4:+39540774 Msa0850460:three_prime_UTR
TTATCTTTCACTTATGAGGG+AGG 0.590654 5_4:+39540728 Msa0850460:three_prime_UTR
AAGAAGCTTGAACAATTGAT+CGG 0.593332 5_4:-39537669 None:intergenic
CCATCTACAGCATTGTCACA+TGG 0.595436 5_4:+39539579 Msa0850460:CDS
CACAGCAATAGGAATTCCAA+TGG 0.596815 5_4:+39540311 Msa0850460:CDS
GCAAACGACAAAGCCGACCA+AGG 0.597047 5_4:-39539336 None:intergenic
CGACAAAGCCGACCAAGGAA+AGG 0.597478 5_4:-39539331 None:intergenic
AGATAGCAACCAAGTTCCAA+AGG 0.597801 5_4:+39539209 Msa0850460:CDS
TGCAGCATATTGAATCAGAT+GGG 0.597818 5_4:+39540424 Msa0850460:CDS
CAACCACAAACAAAGCTATG+AGG 0.601313 5_4:-39539407 None:intergenic
TTCCAGATAATTGTTGCACA+GGG 0.601749 5_4:+39539297 Msa0850460:CDS
AATTTGGAAGATGCCTGGAA+AGG 0.607041 5_4:-39539473 None:intergenic
CAGAGAAAGAGCTAGGATGG+AGG 0.611762 5_4:+39540383 Msa0850460:CDS
AATCGCTGCCAAGGGGATCG+CGG 0.612360 5_4:-39539532 None:intergenic
CAAGTGTGTATGCATTAGAT+CGG 0.615142 5_4:+39540133 Msa0850460:CDS
TGATGATAACAATCGTGGCA+TGG 0.616961 5_4:+39538981 Msa0850460:CDS
TGAATCAGATGGGTTAGTCG+TGG 0.624199 5_4:+39540434 Msa0850460:CDS
TTTAGGTAGCAGTTTCGCGA+GGG 0.624574 5_4:+39538896 Msa0850460:intron
ATTGGAGATTATGATGGTGA+TGG 0.625170 5_4:+39540477 Msa0850460:CDS
CTTTGTCGTTTGCGCCGATG+TGG 0.625789 5_4:+39539346 Msa0850460:CDS
ATGACGCGTGGCGAGGTACG+CGG 0.626064 5_4:-39537704 None:intergenic
CACGATTATGACGCGTGGCG+AGG 0.626809 5_4:-39537711 None:intergenic
GAGCTATCAACACTGAGAAG+AGG 0.645148 5_4:-39539053 None:intergenic
GGGTATAAGCCTATTCCCAA+AGG 0.648713 5_4:+39540222 Msa0850460:CDS
GTGCCCTTATCTTCGAAATG+TGG 0.654369 5_4:-39539177 None:intergenic
GCAAAAGAATCGCTGCCAAG+GGG 0.681579 5_4:-39539539 None:intergenic
GCTGACGAGTCATTACTCCC+CGG 0.685025 5_4:+39537580 Msa0850460:CDS
ATGAGCACGATTATGACGCG+TGG 0.687791 5_4:-39537716 None:intergenic
CCAGTCAGCTCTAACCACAT+CGG 0.691053 5_4:-39539360 None:intergenic
TCTACTGATGATAACAATCG+TGG 0.698441 5_4:+39538976 Msa0850460:CDS
GTTAGTCGTGGATAAGTCCG+AGG 0.702927 5_4:+39540446 Msa0850460:CDS
CATTACCTGAAAGAAAGTGG+AGG 0.707669 5_4:-39537794 None:intergenic
GGCATCTTCCAAATTCAGGG+AGG 0.742143 5_4:+39539481 Msa0850460:CDS
CAACTTCTTTGTATACACCG+GGG 0.767528 5_4:-39537597 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGAAATGTTAATAATTT+AGG + chr5_4:39538773-39538792 Msa0850460:intron 10.0%
!!! TTTGAAATGTTAATAATTTA+GGG + chr5_4:39538774-39538793 Msa0850460:intron 10.0%
!!! ATCTTTTGTTAGTAATTTAA+TGG + chr5_4:39538221-39538240 Msa0850460:intron 15.0%
!!! ATTAATCTTCTAAAAAAACT+TGG - chr5_4:39539792-39539811 None:intergenic 15.0%
!! TTTATGCAATATATGAAGAA+AGG - chr5_4:39538160-39538179 None:intergenic 20.0%
!!! GTTTCTCTTATAGTTTTTTT+AGG - chr5_4:39538604-39538623 None:intergenic 20.0%
!!! ATTGTTTTTGATAAACACTA+TGG + chr5_4:39538666-39538685 Msa0850460:intron 20.0%
!! TTTCAAAATAGTAGCTAAAT+TGG - chr5_4:39538761-39538780 None:intergenic 20.0%
!!! TTTGAAGTCAATTGTATTTT+AGG + chr5_4:39538879-39538898 Msa0850460:intron 20.0%
!! TCAATGATTACATAATTGTT+TGG + chr5_4:39539906-39539925 Msa0850460:intron 20.0%
!! ATGTTTGTGCATAATTTAAT+TGG + chr5_4:39540052-39540071 Msa0850460:intron 20.0%
!! ATTTAATTGGTTAAACTTTG+TGG + chr5_4:39540065-39540084 Msa0850460:intron 20.0%
!! TTTAATTGGTTAAACTTTGT+GGG + chr5_4:39540066-39540085 Msa0850460:intron 20.0%
!! ATTCAAAAGTTTATAGAGAA+GGG + chr5_4:39540573-39540592 Msa0850460:three_prime_UTR 20.0%
!!! AATGACATTTTGATCAATTT+TGG + chr5_4:39540637-39540656 Msa0850460:three_prime_UTR 20.0%
!! ATAAGTGAAAGATAAAACTA+TGG - chr5_4:39540723-39540742 None:intergenic 20.0%
!! GATGACAATGTAAATTTATA+TGG + chr5_4:39540796-39540815 Msa0850460:three_prime_UTR 20.0%
!!! TTATTTTTGGTTGATGGAAT+GGG - chr5_4:39537464-39537483 None:intergenic 25.0%
! ATGTAGTAAAGAGATTGATA+AGG + chr5_4:39537933-39537952 Msa0850460:intron 25.0%
! TGTAGTAAAGAGATTGATAA+GGG + chr5_4:39537934-39537953 Msa0850460:intron 25.0%
!! ACAAAAGATAAGCTTTTATG+TGG - chr5_4:39538210-39538229 None:intergenic 25.0%
! GATAAAATTTGGTTGTTGTA+TGG + chr5_4:39538725-39538744 Msa0850460:intron 25.0%
! TACAATTTCAGGGATTAAAT+TGG + chr5_4:39538812-39538831 Msa0850460:intron 25.0%
! AGAATTTCATTTCATGTTGT+TGG + chr5_4:39539105-39539124 Msa0850460:CDS 25.0%
! GGATTAATAAGCATTATAGT+TGG + chr5_4:39539126-39539145 Msa0850460:CDS 25.0%
! AATACATACTTATTTGTAGC+AGG - chr5_4:39539648-39539667 None:intergenic 25.0%
!! CGAATTTAGGATAATGAATT+GGG - chr5_4:39539717-39539736 None:intergenic 25.0%
!! ACGAATTTAGGATAATGAAT+TGG - chr5_4:39539718-39539737 None:intergenic 25.0%
! AAGCATTTGAAAAATGTTCA+TGG - chr5_4:39539759-39539778 None:intergenic 25.0%
!!! GAGTATTTTTGTTTACTTTG+TGG + chr5_4:39539945-39539964 Msa0850460:intron 25.0%
! AAGAAAATATATTGCTCTAC+AGG + chr5_4:39540517-39540536 Msa0850460:CDS 25.0%
! CATTCAAAAGTTTATAGAGA+AGG + chr5_4:39540572-39540591 Msa0850460:three_prime_UTR 25.0%
! ATGGTGAAAGATAAAAACTA+TGG - chr5_4:39540704-39540723 None:intergenic 25.0%
!!! AGTTTTATCTTTCACTTATG+AGG + chr5_4:39540724-39540743 Msa0850460:three_prime_UTR 25.0%
!! GTTTTATCTTTCACTTATGA+GGG + chr5_4:39540725-39540744 Msa0850460:three_prime_UTR 25.0%
! CAATGTAAATTTATATGGTC+TGG + chr5_4:39540801-39540820 Msa0850460:three_prime_UTR 25.0%
!! TTTAGAAATCTTGATGGGTT+GGG - chr5_4:39537431-39537450 None:intergenic 30.0%
GATGGTTTAGAAATCTTGAT+GGG - chr5_4:39537436-39537455 None:intergenic 30.0%
TGATGGTTTAGAAATCTTGA+TGG - chr5_4:39537437-39537456 None:intergenic 30.0%
!!! GTTATTTTTGGTTGATGGAA+TGG - chr5_4:39537465-39537484 None:intergenic 30.0%
!!! GTTGTGTTATTTTTGGTTGA+TGG - chr5_4:39537470-39537489 None:intergenic 30.0%
!!! CGTCTATGTTGTGTTATTTT+TGG - chr5_4:39537477-39537496 None:intergenic 30.0%
GTTTCTGATTTCATCTCATA+TGG - chr5_4:39537517-39537536 None:intergenic 30.0%
AGAAACATTAACACTTGTTC+TGG + chr5_4:39537531-39537550 Msa0850460:CDS 30.0%
AAGAAGCTTGAACAATTGAT+CGG - chr5_4:39537672-39537691 None:intergenic 30.0%
! AAGAGATTGATAAGGGTATA+TGG + chr5_4:39537941-39537960 Msa0850460:intron 30.0%
! TAAGGGTATATGGTAAATAG+TGG + chr5_4:39537951-39537970 Msa0850460:intron 30.0%
! AAGGGTATATGGTAAATAGT+GGG + chr5_4:39537952-39537971 Msa0850460:intron 30.0%
AAGAAAGGAAAACCATAGAA+GGG - chr5_4:39538145-39538164 None:intergenic 30.0%
CCAAATTAACTTACGAAAGA+CGG + chr5_4:39538270-39538289 Msa0850460:intron 30.0%
ACATTAAAGAGAGAGAAAGT+TGG + chr5_4:39538442-39538461 Msa0850460:intron 30.0%
CATTAAAGAGAGAGAAAGTT+GGG + chr5_4:39538443-39538462 Msa0850460:intron 30.0%
ATTAAAGAGAGAGAAAGTTG+GGG + chr5_4:39538444-39538463 Msa0850460:intron 30.0%
! TCTACCATCTTTTCTACTAT+AGG - chr5_4:39538475-39538494 None:intergenic 30.0%
ACTATAAGAGAAACTATCGA+AGG + chr5_4:39538610-39538629 Msa0850460:intron 30.0%
! AAATTTTATCCCACTAAGTG+AGG - chr5_4:39538715-39538734 None:intergenic 30.0%
TCACTTAGTGGGATAAAATT+TGG + chr5_4:39538714-39538733 Msa0850460:intron 30.0%
AGTTGACATCTTACAATTTC+AGG + chr5_4:39538801-39538820 Msa0850460:intron 30.0%
GTTGACATCTTACAATTTCA+GGG + chr5_4:39538802-39538821 Msa0850460:intron 30.0%
!! AAAATGTTTCCTTTGGAACT+TGG - chr5_4:39539221-39539240 None:intergenic 30.0%
! AAGTTCCAAAGGAAACATTT+TGG + chr5_4:39539220-39539239 Msa0850460:CDS 30.0%
TAGGATAATGAATTGGGATT+GGG - chr5_4:39539711-39539730 None:intergenic 30.0%
TTAGGATAATGAATTGGGAT+TGG - chr5_4:39539712-39539731 None:intergenic 30.0%
GGAAACTACTAAACGAATTT+AGG - chr5_4:39539730-39539749 None:intergenic 30.0%
ACCAATTATGTGTGTACATA+TGG + chr5_4:39539977-39539996 Msa0850460:intron 30.0%
TCCATATGTACACACATAAT+TGG - chr5_4:39539981-39540000 None:intergenic 30.0%
! ATTTTGTCTCAGCATGTTTA+CGG + chr5_4:39540201-39540220 Msa0850460:CDS 30.0%
TTGTCTATTGGAGATTATGA+TGG + chr5_4:39540471-39540490 Msa0850460:CDS 30.0%
AAAATTTCGTGTTTGCTTAG+TGG + chr5_4:39540599-39540618 Msa0850460:three_prime_UTR 30.0%
GTTCTATTACAATCCATGTT+TGG - chr5_4:39540669-39540688 None:intergenic 30.0%
TTGTGTACAGTGTTATACAT+AGG + chr5_4:39540774-39540793 Msa0850460:three_prime_UTR 30.0%
! GTTTAGAAATCTTGATGGGT+TGG - chr5_4:39537432-39537451 None:intergenic 35.0%
! TTGATGGAATGGGATTTTGA+TGG - chr5_4:39537454-39537473 None:intergenic 35.0%
! CTTTTTCCATTATTCCAGCT+AGG - chr5_4:39537561-39537580 None:intergenic 35.0%
ACCAACTTCTTTGTATACAC+CGG - chr5_4:39537602-39537621 None:intergenic 35.0%
ATGCATTACCTGAAAGAAAG+TGG - chr5_4:39537800-39537819 None:intergenic 35.0%
AGGGTATATGGTAAATAGTG+GGG + chr5_4:39537953-39537972 Msa0850460:intron 35.0%
! TATATGGTAAATAGTGGGGT+AGG + chr5_4:39537957-39537976 Msa0850460:intron 35.0%
TGATGGTAATCCAAGAAGAT+TGG + chr5_4:39538039-39538058 Msa0850460:intron 35.0%
TGGAGTGAACCATTATGATT+AGG + chr5_4:39538059-39538078 Msa0850460:intron 35.0%
TTGAGTTTCTTTCCCTTCTA+TGG + chr5_4:39538130-39538149 Msa0850460:intron 35.0%
GAAGAAAGGAAAACCATAGA+AGG - chr5_4:39538146-39538165 None:intergenic 35.0%
CCGTCTTTCGTAAGTTAATT+TGG - chr5_4:39538273-39538292 None:intergenic 35.0%
! TTTTGGTACTTCATTGTGTG+AGG - chr5_4:39538381-39538400 None:intergenic 35.0%
! CACACAATGAAGTACCAAAA+TGG + chr5_4:39538381-39538400 Msa0850460:intron 35.0%
! GAGAAAGTAGACAACCATTT+TGG - chr5_4:39538398-39538417 None:intergenic 35.0%
TGTCTACTTTCTCAGTAGTA+TGG + chr5_4:39538405-39538424 Msa0850460:intron 35.0%
CAGTAGTATGGTTGAGAAAA+AGG + chr5_4:39538417-39538436 Msa0850460:intron 35.0%
AGCACCTATAGTAGAAAAGA+TGG + chr5_4:39538468-39538487 Msa0850460:intron 35.0%
AGATGGTAGAAACTAGACTT+AGG + chr5_4:39538485-39538504 Msa0850460:intron 35.0%
AAACTAGACTTAGGTGGTTT+GGG + chr5_4:39538494-39538513 Msa0850460:intron 35.0%
TAAGAGAAACTATCGAAGGA+TGG + chr5_4:39538614-39538633 Msa0850460:intron 35.0%
AAGAGAAACTATCGAAGGAT+GGG + chr5_4:39538615-39538634 Msa0850460:intron 35.0%
GGGTCTAGAGATTAATAAGT+TGG + chr5_4:39538635-39538654 Msa0850460:intron 35.0%
TCTACTGATGATAACAATCG+TGG + chr5_4:39538976-39538995 Msa0850460:CDS 35.0%
ATAGCTCCAATAACAGTCTT+TGG + chr5_4:39539069-39539088 Msa0850460:CDS 35.0%
ATCTTCGAAATGTGGATCTT+TGG - chr5_4:39539172-39539191 None:intergenic 35.0%
AGATCCACATTTCGAAGATA+AGG + chr5_4:39539173-39539192 Msa0850460:CDS 35.0%
GATCCACATTTCGAAGATAA+GGG + chr5_4:39539174-39539193 Msa0850460:CDS 35.0%
! TGGAGTAAGAGATTTGTTTC+AGG + chr5_4:39539245-39539264 Msa0850460:CDS 35.0%
TTTGTTTCAGGAAGCCAAAT+TGG + chr5_4:39539257-39539276 Msa0850460:CDS 35.0%
CGAAATCCTAGTAACCAATT+TGG - chr5_4:39539274-39539293 None:intergenic 35.0%
TTTCCAGATAATTGTTGCAC+AGG + chr5_4:39539296-39539315 Msa0850460:CDS 35.0%
TTCCAGATAATTGTTGCACA+GGG + chr5_4:39539297-39539316 Msa0850460:CDS 35.0%
!! TTTCCTCATAGCTTTGTTTG+TGG + chr5_4:39539404-39539423 Msa0850460:CDS 35.0%
AGAATTATCCTCCCTGAATT+TGG - chr5_4:39539492-39539511 None:intergenic 35.0%
!! TGGTTTGATGCTTGTCATTT+TGG + chr5_4:39539599-39539618 Msa0850460:CDS 35.0%
!!! GGTTTGATGCTTGTCATTTT+GGG + chr5_4:39539600-39539619 Msa0850460:CDS 35.0%
!!! GTTTGATGCTTGTCATTTTG+GGG + chr5_4:39539601-39539620 Msa0850460:CDS 35.0%
!!! TTTTGGGGCTCTTTATATCT+TGG + chr5_4:39539616-39539635 Msa0850460:CDS 35.0%
GAAAAATGTTCATGGCAAGT+TGG - chr5_4:39539751-39539770 None:intergenic 35.0%
! CAATGCTTGTTGCAATACAT+TGG + chr5_4:39539832-39539851 Msa0850460:intron 35.0%
AAATGAAGCATACAGCTATG+TGG + chr5_4:39540003-39540022 Msa0850460:intron 35.0%
GGAACTATCTCTGCAAAAAT+TGG - chr5_4:39540099-39540118 None:intergenic 35.0%
CAAGTGTGTATGCATTAGAT+CGG + chr5_4:39540133-39540152 Msa0850460:CDS 35.0%
! TTTTGTCTCAGCATGTTTAC+GGG + chr5_4:39540202-39540221 Msa0850460:CDS 35.0%
AAGTCTCTTTACACAGCAAT+AGG + chr5_4:39540300-39540319 Msa0850460:CDS 35.0%
ATTAAACAGCATAGAGCCAT+TGG - chr5_4:39540330-39540349 None:intergenic 35.0%
! GATGGAGGCTTTAATAGAAT+CGG + chr5_4:39540398-39540417 Msa0850460:CDS 35.0%
ATGCAGCATATTGAATCAGA+TGG + chr5_4:39540423-39540442 Msa0850460:CDS 35.0%
TGCAGCATATTGAATCAGAT+GGG + chr5_4:39540424-39540443 Msa0850460:CDS 35.0%
ATCTCCAATAGACAATTCCT+CGG - chr5_4:39540466-39540485 None:intergenic 35.0%
! ATTGGAGATTATGATGGTGA+TGG + chr5_4:39540477-39540496 Msa0850460:CDS 35.0%
ATTCTCCAACTTAGCTGATT+AGG + chr5_4:39540548-39540567 Msa0850460:CDS 35.0%
AATGACCTAATCAGCTAAGT+TGG - chr5_4:39540556-39540575 None:intergenic 35.0%
!! ATTTTGGCATCAACCAAACA+TGG + chr5_4:39540653-39540672 Msa0850460:three_prime_UTR 35.0%
TTATCTTTCACTTATGAGGG+AGG + chr5_4:39540728-39540747 Msa0850460:three_prime_UTR 35.0%
!! TCTTGATGGGTTGGGAAATT+GGG - chr5_4:39537423-39537442 None:intergenic 40.0%
!! ATCTTGATGGGTTGGGAAAT+TGG - chr5_4:39537424-39537443 None:intergenic 40.0%
CAACTTCTTTGTATACACCG+GGG - chr5_4:39537600-39537619 None:intergenic 40.0%
CCAACTTCTTTGTATACACC+GGG - chr5_4:39537601-39537620 None:intergenic 40.0%
!!! TTGCTCTTGGTGCTTTTCTT+TGG + chr5_4:39537743-39537762 Msa0850460:CDS 40.0%
!!! TGCTCTTGGTGCTTTTCTTT+GGG + chr5_4:39537744-39537763 Msa0850460:CDS 40.0%
CATTACCTGAAAGAAAGTGG+AGG - chr5_4:39537797-39537816 None:intergenic 40.0%
CCTCACGTTCTATACTACTA+AGG - chr5_4:39538008-39538027 None:intergenic 40.0%
CCTTAGTAGTATAGAACGTG+AGG + chr5_4:39538005-39538024 Msa0850460:intron 40.0%
ATGGTTCACTCCAATCTTCT+TGG - chr5_4:39538052-39538071 None:intergenic 40.0%
AGAGTTCTATCCTTCTCCAA+GGG + chr5_4:39538089-39538108 Msa0850460:intron 40.0%
GCATCTCATGCTATTCACTT+TGG - chr5_4:39538306-39538325 None:intergenic 40.0%
TGAATAGCATGAGATGCACT+TGG + chr5_4:39538309-39538328 Msa0850460:intron 40.0%
GAATAGCATGAGATGCACTT+GGG + chr5_4:39538310-39538329 Msa0850460:intron 40.0%
TGGTAGAAACTAGACTTAGG+TGG + chr5_4:39538488-39538507 Msa0850460:intron 40.0%
GAAACTAGACTTAGGTGGTT+TGG + chr5_4:39538493-39538512 Msa0850460:intron 40.0%
GACCTGTAGATTCTGTAGTA+AGG + chr5_4:39538530-39538549 Msa0850460:intron 40.0%
CTCCTTACTACAGAATCTAC+AGG - chr5_4:39538535-39538554 None:intergenic 40.0%
! AGTAAGGAGAGTTGATCAGA+TGG + chr5_4:39538546-39538565 Msa0850460:intron 40.0%
TTTATCCCACTAAGTGAGGT+CGG - chr5_4:39538711-39538730 None:intergenic 40.0%
ATCAGTAGAGTCTGCAACTA+GGG - chr5_4:39538965-39538984 None:intergenic 40.0%
TGATGATAACAATCGTGGCA+TGG + chr5_4:39538981-39539000 Msa0850460:CDS 40.0%
TTTGGATGGCTTCAACTAAC+CGG + chr5_4:39539006-39539025 Msa0850460:CDS 40.0%
CTTCAACTAACCGGAAATCT+CGG + chr5_4:39539015-39539034 Msa0850460:CDS 40.0%
AACAACTGAACCGAGATTTC+CGG - chr5_4:39539028-39539047 None:intergenic 40.0%
GCGATACCAAAGACTGTTAT+TGG - chr5_4:39539078-39539097 None:intergenic 40.0%
ATAACAGTCTTTGGTATCGC+TGG + chr5_4:39539078-39539097 Msa0850460:CDS 40.0%
AGATAGCAACCAAGTTCCAA+AGG + chr5_4:39539209-39539228 Msa0850460:CDS 40.0%
CCAGACCAAAATGTTTCCTT+TGG - chr5_4:39539228-39539247 None:intergenic 40.0%
!! CCAAAGGAAACATTTTGGTC+TGG + chr5_4:39539225-39539244 Msa0850460:CDS 40.0%
AGGAAGCCAAATTGGTTACT+AGG + chr5_4:39539265-39539284 Msa0850460:CDS 40.0%
CAACCACAAACAAAGCTATG+AGG - chr5_4:39539410-39539429 None:intergenic 40.0%
TTTGTGGTTGCAAGTTCTGT+TGG + chr5_4:39539420-39539439 Msa0850460:CDS 40.0%
! GGTTTGTTTGGTGGTAAGAT+GGG + chr5_4:39539444-39539463 Msa0850460:CDS 40.0%
AATTTGGAAGATGCCTGGAA+AGG - chr5_4:39539476-39539495 None:intergenic 40.0%
ATTCTAGCACAGATAAGCTC+TGG + chr5_4:39539507-39539526 Msa0850460:CDS 40.0%
AATGCTGTAGATGGATCATC+TGG - chr5_4:39539573-39539592 None:intergenic 40.0%
GGGCTCTTTATATCTTGGAA+TGG + chr5_4:39539621-39539640 Msa0850460:CDS 40.0%
! TGCTTGTTGCAATACATTGG+TGG + chr5_4:39539835-39539854 Msa0850460:intron 40.0%
TAATGCATACACACTTGTCC+GGG - chr5_4:39540130-39540149 None:intergenic 40.0%
CTAATGCATACACACTTGTC+CGG - chr5_4:39540131-39540150 None:intergenic 40.0%
TGAGATGCACTAGATCCTTT+GGG - chr5_4:39540240-39540259 None:intergenic 40.0%
TTGAGATGCACTAGATCCTT+TGG - chr5_4:39540241-39540260 None:intergenic 40.0%
! CCAATGATGAAGCATTCTCT+CGG - chr5_4:39540278-39540297 None:intergenic 40.0%
CACAGCAATAGGAATTCCAA+TGG + chr5_4:39540311-39540330 Msa0850460:CDS 40.0%
AAGTCCGAGGAATTGTCTAT+TGG + chr5_4:39540459-39540478 Msa0850460:CDS 40.0%
ATTTCGTGTTTGCTTAGTGG+TGG + chr5_4:39540602-39540621 Msa0850460:three_prime_UTR 40.0%
GGGAAATTGGGAGTTTGACT+GGG - chr5_4:39537411-39537430 None:intergenic 45.0%
TGGGAAATTGGGAGTTTGAC+TGG - chr5_4:39537412-39537431 None:intergenic 45.0%
GGTGAACCTAGCTGGAATAA+TGG + chr5_4:39537552-39537571 Msa0850460:CDS 45.0%
CCCGGTGTATACAAAGAAGT+TGG + chr5_4:39537598-39537617 Msa0850460:CDS 45.0%
TAAGAGAACCGAGTCCTGTA+GGG - chr5_4:39537642-39537661 None:intergenic 45.0%
CGTGCTCATGTTATTGCTCT+TGG + chr5_4:39537730-39537749 Msa0850460:CDS 45.0%
CTGAAAGAAAGTGGAGGAGA+AGG - chr5_4:39537791-39537810 None:intergenic 45.0%
CTTCTCCTCCACTTTCTTTC+AGG + chr5_4:39537789-39537808 Msa0850460:CDS 45.0%
TGTGATTGAGACCCAAGTGA+GGG + chr5_4:39537887-39537906 Msa0850460:intron 45.0%
TGAGGGCTGATAAGGGAAAA+AGG + chr5_4:39537904-39537923 Msa0850460:intron 45.0%
GAGGGCTGATAAGGGAAAAA+GGG + chr5_4:39537905-39537924 Msa0850460:intron 45.0%
AGGGCTGATAAGGGAAAAAG+GGG + chr5_4:39537906-39537925 Msa0850460:intron 45.0%
AGTATAGAACGTGAGGTGTG+TGG + chr5_4:39538012-39538031 Msa0850460:intron 45.0%
CTCTCTGCGCCTAATCATAA+TGG - chr5_4:39538071-39538090 None:intergenic 45.0%
GAGAGTTCTATCCTTCTCCA+AGG + chr5_4:39538088-39538107 Msa0850460:intron 45.0%
GAGTTCTATCCTTCTCCAAG+GGG + chr5_4:39538090-39538109 Msa0850460:intron 45.0%
TACCATAGAGTCAATCCCCT+TGG - chr5_4:39538108-39538127 None:intergenic 45.0%
!!! GCACTTGGGTATGGTTTTGT+AGG + chr5_4:39538324-39538343 Msa0850460:intron 45.0%
! AGGCACTGTCACAATAGTCT+CGG - chr5_4:39538361-39538380 None:intergenic 45.0%
! AAGGAGAGTTGATCAGATGG+AGG + chr5_4:39538549-39538568 Msa0850460:intron 45.0%
! AGGAGAGTTGATCAGATGGA+GGG + chr5_4:39538550-39538569 Msa0850460:intron 45.0%
ATGTATCCGACCTCACTTAG+TGG + chr5_4:39538702-39538721 Msa0850460:intron 45.0%
TGTATCCGACCTCACTTAGT+GGG + chr5_4:39538703-39538722 Msa0850460:intron 45.0%
!! TTTTAGGTAGCAGTTTCGCG+AGG + chr5_4:39538895-39538914 Msa0850460:intron 45.0%
TTTAGGTAGCAGTTTCGCGA+GGG + chr5_4:39538896-39538915 Msa0850460:intron 45.0%
CAGTTTCGCGAGGGTTAAAT+GGG + chr5_4:39538905-39538924 Msa0850460:CDS 45.0%
CATCAGTAGAGTCTGCAACT+AGG - chr5_4:39538966-39538985 None:intergenic 45.0%
! AACAATCGTGGCATGGCTTT+TGG + chr5_4:39538988-39539007 Msa0850460:CDS 45.0%
GGAAATCTCGGTTCAGTTGT+TGG + chr5_4:39539027-39539046 Msa0850460:CDS 45.0%
AATCTCGGTTCAGTTGTTGG+TGG + chr5_4:39539030-39539049 Msa0850460:CDS 45.0%
GAGCTATCAACACTGAGAAG+AGG - chr5_4:39539056-39539075 None:intergenic 45.0%
GTGCCCTTATCTTCGAAATG+TGG - chr5_4:39539180-39539199 None:intergenic 45.0%
CACCCTGTGCAACAATTATC+TGG - chr5_4:39539302-39539321 None:intergenic 45.0%
! ATTGTTGCACAGGGTGTTAC+TGG + chr5_4:39539306-39539325 Msa0850460:CDS 45.0%
!! GTGTTACTGGTTCCTTTCCT+TGG + chr5_4:39539319-39539338 Msa0850460:CDS 45.0%
!! TACTGGTTCCTTTCCTTGGT+CGG + chr5_4:39539323-39539342 Msa0850460:CDS 45.0%
! AGTTCTGTTGGCGGTTTGTT+TGG + chr5_4:39539432-39539451 Msa0850460:CDS 45.0%
! CGGTTTGTTTGGTGGTAAGA+TGG + chr5_4:39539443-39539462 Msa0850460:CDS 45.0%
AGATGGGAGATATCCTTTCC+AGG + chr5_4:39539460-39539479 Msa0850460:CDS 45.0%
TCCAGGCATCTTCCAAATTC+AGG + chr5_4:39539477-39539496 Msa0850460:CDS 45.0%
CCAGGCATCTTCCAAATTCA+GGG + chr5_4:39539478-39539497 Msa0850460:CDS 45.0%
AGCAAAAGAATCGCTGCCAA+GGG - chr5_4:39539543-39539562 None:intergenic 45.0%
! TTGGCAGCGATTCTTTTGCT+GGG + chr5_4:39539543-39539562 Msa0850460:CDS 45.0%
CCATGTGACAATGCTGTAGA+TGG - chr5_4:39539582-39539601 None:intergenic 45.0%
CCATCTACAGCATTGTCACA+TGG + chr5_4:39539579-39539598 Msa0850460:CDS 45.0%
AGATAGTTCCAGAGAGATCC+CGG + chr5_4:39540109-39540128 Msa0850460:CDS 45.0%
TGAGACAAAATTCCCACTGC+AGG - chr5_4:39540192-39540211 None:intergenic 45.0%
GGGTATAAGCCTATTCCCAA+AGG + chr5_4:39540222-39540241 Msa0850460:CDS 45.0%
! GCACTAGATCCTTTGGGAAT+AGG - chr5_4:39540234-39540253 None:intergenic 45.0%
CCGAGAGAATGCTTCATCAT+TGG + chr5_4:39540275-39540294 Msa0850460:CDS 45.0%
TCTTTCTCTGTCTCTCGGAT+AGG - chr5_4:39540373-39540392 None:intergenic 45.0%
! CTAGCTCTTTCTCTGTCTCT+CGG - chr5_4:39540378-39540397 None:intergenic 45.0%
AGACAGAGAAAGAGCTAGGA+TGG + chr5_4:39540380-39540399 Msa0850460:CDS 45.0%
!! TGAATCAGATGGGTTAGTCG+TGG + chr5_4:39540434-39540453 Msa0850460:CDS 45.0%
CTTGTTCTGGTGAACCTAGC+TGG + chr5_4:39537544-39537563 Msa0850460:CDS 50.0%
GCTCTTCATACTGACCCTAC+AGG + chr5_4:39537625-39537644 Msa0850460:CDS 50.0%
CATACTGACCCTACAGGACT+CGG + chr5_4:39537631-39537650 Msa0850460:CDS 50.0%
GTAAGAGAACCGAGTCCTGT+AGG - chr5_4:39537643-39537662 None:intergenic 50.0%
ATGAGCACGATTATGACGCG+TGG - chr5_4:39537719-39537738 None:intergenic 50.0%
GTGTGATTGAGACCCAAGTG+AGG + chr5_4:39537886-39537905 Msa0850460:intron 50.0%
ACCCAAGTGAGGGCTGATAA+GGG + chr5_4:39537897-39537916 Msa0850460:intron 50.0%
TCCCTTATCAGCCCTCACTT+GGG - chr5_4:39537901-39537920 None:intergenic 50.0%
TTCCCTTATCAGCCCTCACT+TGG - chr5_4:39537902-39537921 None:intergenic 50.0%
! GTGAGGTGTGTGGATTGTGA+TGG + chr5_4:39538022-39538041 Msa0850460:intron 50.0%
AGAGTCAATCCCCTTGGAGA+AGG - chr5_4:39538102-39538121 None:intergenic 50.0%
! CTCCAAGGGGATTGACTCTA+TGG + chr5_4:39538103-39538122 Msa0850460:intron 50.0%
GCATGAGATGCACTTGGGTA+TGG + chr5_4:39538315-39538334 Msa0850460:intron 50.0%
! GGAGAGTTGATCAGATGGAG+GGG + chr5_4:39538551-39538570 Msa0850460:intron 50.0%
ATGGAGGGGACTCAAATCAC+TGG + chr5_4:39538565-39538584 Msa0850460:intron 50.0%
GCAGTTTCGCGAGGGTTAAA+TGG + chr5_4:39538904-39538923 Msa0850460:CDS 50.0%
TCGCGAGGGTTAAATGGGAT+TGG + chr5_4:39538910-39538929 Msa0850460:CDS 50.0%
GCAACTAGGGACTGAATTGC+AGG - chr5_4:39538952-39538971 None:intergenic 50.0%
! ATCGTGGCATGGCTTTTGGA+TGG + chr5_4:39538992-39539011 Msa0850460:CDS 50.0%
CAGTCTTTGGTATCGCTGGT+TGG + chr5_4:39539082-39539101 Msa0850460:CDS 50.0%
! CCAGTCAGCTCTAACCACAT+CGG - chr5_4:39539363-39539382 None:intergenic 50.0%
GTGGTTGCAAGTTCTGTTGG+CGG + chr5_4:39539423-39539442 Msa0850460:CDS 50.0%
! TCTGTTGGCGGTTTGTTTGG+TGG + chr5_4:39539435-39539454 Msa0850460:CDS 50.0%
CCCTGAATTTGGAAGATGCC+TGG - chr5_4:39539481-39539500 None:intergenic 50.0%
GGCATCTTCCAAATTCAGGG+AGG + chr5_4:39539481-39539500 Msa0850460:CDS 50.0%
GCAAAAGAATCGCTGCCAAG+GGG - chr5_4:39539542-39539561 None:intergenic 50.0%
CAGCAAAAGAATCGCTGCCA+AGG - chr5_4:39539544-39539563 None:intergenic 50.0%
! CTTGGCAGCGATTCTTTTGC+TGG + chr5_4:39539542-39539561 Msa0850460:CDS 50.0%
! ATCTTTTGCTCCTCCTGCAG+TGG + chr5_4:39540176-39540195 Msa0850460:CDS 50.0%
! TCTTTTGCTCCTCCTGCAGT+GGG + chr5_4:39540177-39540196 Msa0850460:CDS 50.0%
GACAAAATTCCCACTGCAGG+AGG - chr5_4:39540189-39540208 None:intergenic 50.0%
CGAGAGACAGAGAAAGAGCT+AGG + chr5_4:39540376-39540395 Msa0850460:CDS 50.0%
CAGAGAAAGAGCTAGGATGG+AGG + chr5_4:39540383-39540402 Msa0850460:CDS 50.0%
GTTAGTCGTGGATAAGTCCG+AGG + chr5_4:39540446-39540465 Msa0850460:CDS 50.0%
GCTGACGAGTCATTACTCCC+CGG + chr5_4:39537580-39537599 Msa0850460:CDS 55.0%
GACCCAAGTGAGGGCTGATA+AGG + chr5_4:39537896-39537915 Msa0850460:intron 55.0%
GAGGGGACTCAAATCACTGG+TGG + chr5_4:39538568-39538587 Msa0850460:intron 55.0%
CGACAAAGCCGACCAAGGAA+AGG - chr5_4:39539334-39539353 None:intergenic 55.0%
GCAAACGACAAAGCCGACCA+AGG - chr5_4:39539339-39539358 None:intergenic 55.0%
! CTTTGTCGTTTGCGCCGATG+TGG + chr5_4:39539346-39539365 Msa0850460:CDS 55.0%
CCGATGTGGTTAGAGCTGAC+TGG + chr5_4:39539360-39539379 Msa0850460:CDS 55.0%
ACACTTGTCCGGGATCTCTC+TGG - chr5_4:39540120-39540139 None:intergenic 55.0%
TGGCGAGGTACGCGGCAATT+GGG - chr5_4:39537699-39537718 None:intergenic 60.0%
CACGATTATGACGCGTGGCG+AGG - chr5_4:39537714-39537733 None:intergenic 60.0%
AATCGCTGCCAAGGGGATCG+CGG - chr5_4:39539535-39539554 None:intergenic 60.0%
GTGGCGAGGTACGCGGCAAT+TGG - chr5_4:39537700-39537719 None:intergenic 65.0%
ATGACGCGTGGCGAGGTACG+CGG - chr5_4:39537707-39537726 None:intergenic 65.0%
CTCTGGATCCGCGATCCCCT+TGG + chr5_4:39539524-39539543 Msa0850460:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 39537405 39540824 39537405 ID=Msa0850460;Name=Msa0850460
chr5_4 mRNA 39537405 39540824 39537405 ID=Msa0850460-mRNA-1;Parent=Msa0850460;Name=Msa0850460-mRNA-1;_AED=0.01;_eAED=0.01;_QI=118|1|1|1|1|1|3|255|506
chr5_4 exon 39537405 39537810 39537405 ID=Msa0850460-mRNA-1:exon:12582;Parent=Msa0850460-mRNA-1
chr5_4 exon 39538901 39539658 39538901 ID=Msa0850460-mRNA-1:exon:12583;Parent=Msa0850460-mRNA-1
chr5_4 exon 39540095 39540824 39540095 ID=Msa0850460-mRNA-1:exon:12584;Parent=Msa0850460-mRNA-1
chr5_4 five_prime_UTR 39537405 39537522 39537405 ID=Msa0850460-mRNA-1:five_prime_utr;Parent=Msa0850460-mRNA-1
chr5_4 CDS 39537523 39537810 39537523 ID=Msa0850460-mRNA-1:cds;Parent=Msa0850460-mRNA-1
chr5_4 CDS 39538901 39539658 39538901 ID=Msa0850460-mRNA-1:cds;Parent=Msa0850460-mRNA-1
chr5_4 CDS 39540095 39540569 39540095 ID=Msa0850460-mRNA-1:cds;Parent=Msa0850460-mRNA-1
chr5_4 three_prime_UTR 39540570 39540824 39540570 ID=Msa0850460-mRNA-1:three_prime_utr;Parent=Msa0850460-mRNA-1
Gene Sequence

>Msa0850460

ATGAAATCAGAAACATTAACACTTGTTCTGGTGAACCTAGCTGGAATAATGGAAAAAGCTGACGAGTCATTACTCCCCGGTGTATACAAAGAAGTTGGTGCTGCTCTTCATACTGACCCTACAGGACTCGGTTCTCTTACTCTTTTCCGATCAATTGTTCAAGCTTCTTGTTACCCAATTGCCGCGTACCTCGCCACGCGTCATAATCGTGCTCATGTTATTGCTCTTGGTGCTTTTCTTTGGGCTGCTGCTACTTTTCTTGTTGCCTTCTCCTCCACTTTCTTTCAGGTAGCAGTTTCGCGAGGGTTAAATGGGATTGGTCTTGCACTTGTAACTCCTGCAATTCAGTCCCTAGTTGCAGACTCTACTGATGATAACAATCGTGGCATGGCTTTTGGATGGCTTCAACTAACCGGAAATCTCGGTTCAGTTGTTGGTGGCCTCTTCTCAGTGTTGATAGCTCCAATAACAGTCTTTGGTATCGCTGGTTGGAGAATTTCATTTCATGTTGTTGGATTAATAAGCATTATAGTTGGCACTTTAGTTTACATCTTTGCCAAAGATCCACATTTCGAAGATAAGGGCACGCTTGCAAAAGATAGCAACCAAGTTCCAAAGGAAACATTTTGGTCTGGAGTAAGAGATTTGTTTCAGGAAGCCAAATTGGTTACTAGGATTTCGTCTTTCCAGATAATTGTTGCACAGGGTGTTACTGGTTCCTTTCCTTGGTCGGCTTTGTCGTTTGCGCCGATGTGGTTAGAGCTGACTGGCTTTTCACATGCAAAAACTGCTTTCCTCATAGCTTTGTTTGTGGTTGCAAGTTCTGTTGGCGGTTTGTTTGGTGGTAAGATGGGAGATATCCTTTCCAGGCATCTTCCAAATTCAGGGAGGATAATTCTAGCACAGATAAGCTCTGGATCCGCGATCCCCTTGGCAGCGATTCTTTTGCTGGGTTTACCAGATGATCCATCTACAGCATTGTCACATGGTTTGATGCTTGTCATTTTGGGGCTCTTTATATCTTGGAATGGTCCTGCTACAAATAATCCAATTTTTGCAGAGATAGTTCCAGAGAGATCCCGGACAAGTGTGTATGCATTAGATCGGTCTTTTGAGTCTATACTATCATCTTTTGCTCCTCCTGCAGTGGGAATTTTGTCTCAGCATGTTTACGGGTATAAGCCTATTCCCAAAGGATCTAGTGCATCTCAAGAGATTTTAACAGACCGAGAGAATGCTTCATCATTGGCAAAGTCTCTTTACACAGCAATAGGAATTCCAATGGCTCTATGCTGTTTAATCTATTCATTTCTTTATAAGACCTATCCGAGAGACAGAGAAAGAGCTAGGATGGAGGCTTTAATAGAATCGGAGATGCAGCATATTGAATCAGATGGGTTAGTCGTGGATAAGTCCGAGGAATTGTCTATTGGAGATTATGATGGTGATGGTGCTGATCTTGATGATGAAGAAAATATATTGCTCTACAGGCAGTTGACATTCTCCAACTTAGCTGATTAG

Protein sequence

>Msa0850460

MKSETLTLVLVNLAGIMEKADESLLPGVYKEVGAALHTDPTGLGSLTLFRSIVQASCYPIAAYLATRHNRAHVIALGAFLWAAATFLVAFSSTFFQVAVSRGLNGIGLALVTPAIQSLVADSTDDNNRGMAFGWLQLTGNLGSVVGGLFSVLIAPITVFGIAGWRISFHVVGLISIIVGTLVYIFAKDPHFEDKGTLAKDSNQVPKETFWSGVRDLFQEAKLVTRISSFQIIVAQGVTGSFPWSALSFAPMWLELTGFSHAKTAFLIALFVVASSVGGLFGGKMGDILSRHLPNSGRIILAQISSGSAIPLAAILLLGLPDDPSTALSHGLMLVILGLFISWNGPATNNPIFAEIVPERSRTSVYALDRSFESILSSFAPPAVGILSQHVYGYKPIPKGSSASQEILTDRENASSLAKSLYTAIGIPMALCCLIYSFLYKTYPRDRERARMEALIESEMQHIESDGLVVDKSEELSIGDYDGDGADLDDEENILLYRQLTFSNLAD*