Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857800 | XP_003616526.1 | 97.049 | 576 | 17 | 0 | 1 | 576 | 1 | 576 | 0.0 | 1159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857800 | sp|F4K295|ROGF5_ARATH | 61.858 | 506 | 181 | 8 | 42 | 537 | 63 | 566 | 0.0 | 612 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857800 | F6LPU5 | 97.049 | 576 | 17 | 0 | 1 | 576 | 1 | 576 | 0.0 | 1159 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020540 | Msa0857800 | 0.817084 | 3.961527e-52 | -8.615850e-47 |
| Msa0032970 | Msa0857800 | 0.821266 | 4.424647e-53 | -8.615850e-47 |
| Msa0032980 | Msa0857800 | 0.814499 | 1.493194e-51 | -8.615850e-47 |
| Msa0062340 | Msa0857800 | 0.808704 | 2.718055e-50 | -8.615850e-47 |
| Msa0089460 | Msa0857800 | 0.811300 | 7.500331e-51 | -8.615850e-47 |
| Msa0091350 | Msa0857800 | 0.822797 | 1.954676e-53 | -8.615850e-47 |
| Msa0106630 | Msa0857800 | 0.800922 | 1.147982e-48 | -8.615850e-47 |
| Msa0608350 | Msa0857800 | 0.832030 | 1.192407e-55 | -8.615850e-47 |
| Msa0613630 | Msa0857800 | 0.800951 | 1.132413e-48 | -8.615850e-47 |
| Msa0620500 | Msa0857800 | 0.807750 | 4.339890e-50 | -8.615850e-47 |
| Msa0645340 | Msa0857800 | 0.804427 | 2.171853e-49 | -8.615850e-47 |
| Msa0647050 | Msa0857800 | 0.805907 | 1.063858e-49 | -8.615850e-47 |
| Msa0648760 | Msa0857800 | 0.814575 | 1.436789e-51 | -8.615850e-47 |
| Msa0654740 | Msa0857800 | 0.829838 | 4.114133e-55 | -8.615850e-47 |
| Msa0687090 | Msa0857800 | 0.803539 | 3.321769e-49 | -8.615850e-47 |
| Msa0688620 | Msa0857800 | 0.802881 | 4.544356e-49 | -8.615850e-47 |
| Msa0690320 | Msa0857800 | 0.807765 | 4.308299e-50 | -8.615850e-47 |
| Msa0690740 | Msa0857800 | 0.800648 | 1.305843e-48 | -8.615850e-47 |
| Msa0691270 | Msa0857800 | 0.835770 | 1.382899e-56 | -8.615850e-47 |
| Msa0700500 | Msa0857800 | 0.823231 | 1.548307e-53 | -8.615850e-47 |
| Msa0713920 | Msa0857800 | 0.827028 | 1.961802e-54 | -8.615850e-47 |
| Msa0714520 | Msa0857800 | 0.841579 | 4.362929e-58 | -8.615850e-47 |
| Msa0717900 | Msa0857800 | 0.835332 | 1.784690e-56 | -8.615850e-47 |
| Msa0740710 | Msa0857800 | 0.815089 | 1.105106e-51 | -8.615850e-47 |
| Msa0743440 | Msa0857800 | 0.831503 | 1.608550e-55 | -8.615850e-47 |
| Msa0749190 | Msa0857800 | 0.801162 | 1.025627e-48 | -8.615850e-47 |
| Msa0750520 | Msa0857800 | 0.800007 | 1.763445e-48 | -8.615850e-47 |
| Msa0763550 | Msa0857800 | 0.834188 | 3.462816e-56 | -8.615850e-47 |
| Msa0769730 | Msa0857800 | 0.801436 | 9.012584e-49 | -8.615850e-47 |
| Msa0778550 | Msa0857800 | 0.801060 | 1.076105e-48 | -8.615850e-47 |
| Msa0780910 | Msa0857800 | 0.811873 | 5.631453e-51 | -8.615850e-47 |
| Msa0805680 | Msa0857800 | 0.813487 | 2.497286e-51 | -8.615850e-47 |
| Msa0807160 | Msa0857800 | 0.807524 | 4.846034e-50 | -8.615850e-47 |
| Msa0816080 | Msa0857800 | 0.822651 | 2.113665e-53 | -8.615850e-47 |
| Msa0817360 | Msa0857800 | 0.835596 | 1.530762e-56 | -8.615850e-47 |
| Msa0837460 | Msa0857800 | 0.800980 | 1.117223e-48 | -8.615850e-47 |
| Msa0127340 | Msa0857800 | 0.808834 | 2.549182e-50 | -8.615850e-47 |
| Msa0140380 | Msa0857800 | 0.821428 | 4.059097e-53 | -8.615850e-47 |
| Msa0153210 | Msa0857800 | 0.813456 | 2.536033e-51 | -8.615850e-47 |
| Msa0159590 | Msa0857800 | 0.827811 | 1.272702e-54 | -8.615850e-47 |
| Msa0165830 | Msa0857800 | 0.815640 | 8.335213e-52 | -8.615850e-47 |
| Msa0165840 | Msa0857800 | 0.800639 | 1.311287e-48 | -8.615850e-47 |
| Msa0232760 | Msa0857800 | 0.823393 | 1.419206e-53 | -8.615850e-47 |
| Msa0368860 | Msa0857800 | 0.821347 | 4.238498e-53 | -8.615850e-47 |
| Msa0373170 | Msa0857800 | 0.816188 | 6.290001e-52 | -8.615850e-47 |
| Msa0383000 | Msa0857800 | 0.817261 | 3.614927e-52 | -8.615850e-47 |
| Msa0412130 | Msa0857800 | 0.816142 | 6.439850e-52 | -8.615850e-47 |
| Msa0421750 | Msa0857800 | 0.815667 | 8.222104e-52 | -8.615850e-47 |
| Msa0433150 | Msa0857800 | 0.815598 | 8.517015e-52 | -8.615850e-47 |
| Msa0433760 | Msa0857800 | 0.827883 | 1.223223e-54 | -8.615850e-47 |
| Msa0466520 | Msa0857800 | 0.826806 | 2.216838e-54 | -8.615850e-47 |
| Msa0467690 | Msa0857800 | 0.814256 | 1.690058e-51 | -8.615850e-47 |
| Msa0477630 | Msa0857800 | 0.818165 | 2.260054e-52 | -8.615850e-47 |
| Msa0480730 | Msa0857800 | 0.820281 | 7.451536e-53 | -8.615850e-47 |
| Msa0272260 | Msa0857800 | 0.809445 | 1.885239e-50 | -8.615850e-47 |
| Msa0281540 | Msa0857800 | 0.802242 | 6.157648e-49 | -8.615850e-47 |
| Msa0344110 | Msa0857800 | 0.800754 | 1.242397e-48 | -8.615850e-47 |
| Msa0507810 | Msa0857800 | 0.804420 | 2.178645e-49 | -8.615850e-47 |
| Msa0507920 | Msa0857800 | 0.808704 | 2.717326e-50 | -8.615850e-47 |
| Msa0512530 | Msa0857800 | 0.803024 | 4.247127e-49 | -8.615850e-47 |
| Msa0514020 | Msa0857800 | 0.813685 | 2.258320e-51 | -8.615850e-47 |
| Msa0520870 | Msa0857800 | 0.805332 | 1.405236e-49 | -8.615850e-47 |
| Msa0521680 | Msa0857800 | 0.839877 | 1.218457e-57 | -8.615850e-47 |
| Msa0524520 | Msa0857800 | 0.805614 | 1.225993e-49 | -8.615850e-47 |
| Msa0554300 | Msa0857800 | 0.810219 | 1.285137e-50 | -8.615850e-47 |
| Msa0559100 | Msa0857800 | 0.808166 | 3.538637e-50 | -8.615850e-47 |
| Msa0561560 | Msa0857800 | 0.825671 | 4.127550e-54 | -8.615850e-47 |
| Msa0563740 | Msa0857800 | 0.818768 | 1.650022e-52 | -8.615850e-47 |
| Msa0563900 | Msa0857800 | 0.806434 | 8.243546e-50 | -8.615850e-47 |
| Msa0563980 | Msa0857800 | 0.829360 | 5.376767e-55 | -8.615850e-47 |
| Msa0564980 | Msa0857800 | 0.838041 | 3.639576e-57 | -8.615850e-47 |
| Msa0855230 | Msa0857800 | 0.802124 | 6.510419e-49 | -8.615850e-47 |
| Msa0857800 | Msa0857890 | 0.856904 | 2.347204e-62 | -8.615850e-47 |
| Msa0857800 | Msa0909760 | 0.815355 | 9.643849e-52 | -8.615850e-47 |
| Msa0857800 | Msa0924430 | 0.827145 | 1.839215e-54 | -8.615850e-47 |
| Msa0857800 | Msa0989370 | 0.805861 | 1.088162e-49 | -8.615850e-47 |
| Msa0857800 | Msa1008670 | 0.818538 | 1.860598e-52 | -8.615850e-47 |
| Msa0857800 | Msa1015250 | 0.800669 | 1.293112e-48 | -8.615850e-47 |
| Msa0857800 | Msa1060900 | 0.807702 | 4.443649e-50 | -8.615850e-47 |
| Msa0857800 | Msa1071410 | 0.803622 | 3.192918e-49 | -8.615850e-47 |
| Msa0857800 | Msa1078880 | 0.833887 | 4.119797e-56 | -8.615850e-47 |
| Msa0857800 | Msa1078970 | 0.829991 | 3.775257e-55 | -8.615850e-47 |
| Msa0857800 | Msa1082380 | 0.816832 | 4.512017e-52 | -8.615850e-47 |
| Msa0857800 | Msa1116660 | 0.805263 | 1.452785e-49 | -8.615850e-47 |
| Msa0857800 | Msa1116740 | 0.821481 | 3.946618e-53 | -8.615850e-47 |
| Msa0857800 | Msa1127280 | 0.803117 | 4.063294e-49 | -8.615850e-47 |
| Msa0857800 | Msa1148630 | 0.813125 | 2.999157e-51 | -8.615850e-47 |
| Msa0857800 | Msa1162180 | 0.812898 | 3.362027e-51 | -8.615850e-47 |
| Msa0857800 | Msa1162880 | 0.814780 | 1.294201e-51 | -8.615850e-47 |
| Msa0857800 | Msa1165480 | 0.806786 | 6.944220e-50 | -8.615850e-47 |
| Msa0857800 | Msa1169190 | 0.827720 | 1.338784e-54 | -8.615850e-47 |
| Msa0857800 | Msa1213830 | 0.842805 | 2.065715e-58 | -8.615850e-47 |
| Msa0857800 | Msa1214350 | 0.823877 | 1.093452e-53 | -8.615850e-47 |
| Msa0857800 | Msa1215980 | 0.808113 | 3.631869e-50 | -8.615850e-47 |
| Msa0857800 | Msa1219770 | 0.815421 | 9.324358e-52 | -8.615850e-47 |
| Msa0857800 | Msa1252790 | 0.802396 | 5.721665e-49 | -8.615850e-47 |
| Msa0857800 | Msa1254540 | 0.827951 | 1.177781e-54 | -8.615850e-47 |
| Msa0857800 | Msa1263740 | 0.817888 | 2.609769e-52 | -8.615850e-47 |
| Msa0857800 | Msa1263780 | 0.839530 | 1.499875e-57 | -8.615850e-47 |
| Msa0857800 | Msa1268540 | 0.803941 | 2.741488e-49 | -8.615850e-47 |
| Msa0857800 | Msa1294460 | 0.859128 | 5.125310e-63 | -8.615850e-47 |
| Msa0857800 | Msa1294790 | 0.832750 | 7.910746e-56 | -8.615850e-47 |
| Msa0857800 | Msa1296330 | 0.807454 | 5.015481e-50 | -8.615850e-47 |
| Msa0857800 | Msa1300460 | 0.820888 | 5.406379e-53 | -8.615850e-47 |
| Msa0857800 | Msa1305920 | 0.810999 | 8.716844e-51 | -8.615850e-47 |
| Msa0857800 | Msa1332950 | 0.815854 | 7.469688e-52 | -8.615850e-47 |
| Msa0857800 | Msa1361930 | 0.801313 | 9.552817e-49 | -8.615850e-47 |
| Msa0857800 | Msa1364410 | 0.804192 | 2.430633e-49 | -8.615850e-47 |
| Msa0857800 | Msa1381470 | 0.830192 | 3.373189e-55 | -8.615850e-47 |
| Msa0857800 | Msa1381800 | 0.807317 | 5.363466e-50 | -8.615850e-47 |
| Msa0857800 | Msa1406720 | 0.821009 | 5.070812e-53 | -8.615850e-47 |
| Msa0857800 | Msa1434640 | 0.805252 | 1.460235e-49 | -8.615850e-47 |
| Msa0857800 | Msa1450190 | 0.812810 | 3.515880e-51 | -8.615850e-47 |
| Msa0857800 | Msa1457840 | 0.811937 | 5.453375e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857800 | MtrunA17_Chr5g0436141 | 97.049 | 576 | 17 | 0 | 1 | 576 | 1 | 576 | 0.0 | 1159 |
| Msa0857800 | MtrunA17_Chr3g0112731 | 67.987 | 606 | 147 | 13 | 1 | 572 | 1 | 593 | 0.0 | 769 |
| Msa0857800 | MtrunA17_Chr7g0240501 | 64.333 | 457 | 158 | 2 | 84 | 539 | 186 | 638 | 0.0 | 619 |
| Msa0857800 | MtrunA17_Chr4g0008771 | 61.806 | 432 | 155 | 3 | 42 | 469 | 54 | 479 | 0.0 | 536 |
| Msa0857800 | MtrunA17_Chr4g0038651 | 52.490 | 482 | 201 | 7 | 84 | 558 | 89 | 549 | 6.98e-161 | 471 |
| Msa0857800 | MtrunA17_Chr8g0348921 | 56.000 | 375 | 144 | 4 | 84 | 445 | 99 | 465 | 9.16e-136 | 403 |
| Msa0857800 | MtrunA17_Chr4g0004771 | 50.272 | 368 | 162 | 4 | 84 | 450 | 92 | 439 | 1.15e-127 | 385 |
| Msa0857800 | MtrunA17_Chr7g0247761 | 50.957 | 418 | 141 | 4 | 84 | 445 | 115 | 524 | 1.01e-126 | 382 |
| Msa0857800 | MtrunA17_Chr6g0485861 | 48.974 | 390 | 171 | 6 | 84 | 464 | 98 | 468 | 6.57e-125 | 378 |
| Msa0857800 | MtrunA17_Chr2g0331631 | 49.036 | 363 | 166 | 4 | 84 | 445 | 88 | 432 | 5.95e-121 | 367 |
| Msa0857800 | MtrunA17_Chr5g0408591 | 45.553 | 371 | 192 | 2 | 75 | 445 | 111 | 471 | 6.87e-105 | 327 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857800 | AT5G05940.1 | 61.858 | 506 | 181 | 8 | 42 | 537 | 63 | 566 | 0.0 | 612 |
| Msa0857800 | AT5G02010.1 | 69.192 | 396 | 113 | 4 | 63 | 455 | 52 | 441 | 0.0 | 578 |
| Msa0857800 | AT3G55660.1 | 53.244 | 524 | 199 | 9 | 42 | 534 | 71 | 579 | 4.96e-174 | 505 |
| Msa0857800 | AT5G05940.2 | 65.067 | 375 | 126 | 3 | 42 | 413 | 63 | 435 | 7.53e-174 | 501 |
| Msa0857800 | AT4G38430.1 | 55.711 | 429 | 174 | 5 | 67 | 491 | 80 | 496 | 2.67e-160 | 469 |
| Msa0857800 | AT3G55660.2 | 59.524 | 378 | 136 | 5 | 42 | 413 | 71 | 437 | 5.65e-151 | 441 |
| Msa0857800 | AT4G00460.2 | 55.959 | 386 | 155 | 5 | 74 | 452 | 96 | 473 | 2.73e-140 | 415 |
| Msa0857800 | AT4G00460.4 | 55.959 | 386 | 155 | 5 | 74 | 452 | 96 | 473 | 2.73e-140 | 415 |
| Msa0857800 | AT1G01700.1 | 57.447 | 376 | 145 | 5 | 77 | 445 | 111 | 478 | 3.85e-139 | 413 |
| Msa0857800 | AT1G01700.4 | 53.202 | 406 | 145 | 6 | 77 | 445 | 111 | 508 | 1.19e-132 | 397 |
| Msa0857800 | AT3G24620.1 | 51.233 | 365 | 158 | 4 | 84 | 447 | 87 | 432 | 1.78e-129 | 389 |
| Msa0857800 | AT2G45890.1 | 51.187 | 379 | 164 | 6 | 84 | 452 | 95 | 462 | 1.86e-124 | 374 |
| Msa0857800 | AT4G13240.1 | 48.774 | 367 | 168 | 4 | 84 | 449 | 76 | 423 | 2.21e-123 | 374 |
| Msa0857800 | AT1G52240.1 | 50.815 | 368 | 158 | 5 | 84 | 450 | 106 | 451 | 7.87e-121 | 368 |
| Msa0857800 | AT1G79860.1 | 49.311 | 363 | 163 | 5 | 84 | 445 | 94 | 436 | 1.90e-120 | 366 |
| Msa0857800 | AT4G00460.3 | 53.666 | 341 | 143 | 5 | 119 | 452 | 8 | 340 | 2.69e-118 | 354 |
| Msa0857800 | AT1G01700.3 | 53.803 | 355 | 142 | 6 | 77 | 417 | 111 | 457 | 2.52e-116 | 353 |
| Msa0857800 | AT3G16130.1 | 48.641 | 368 | 171 | 5 | 84 | 450 | 92 | 442 | 6.44e-115 | 352 |
| Msa0857800 | AT5G19560.1 | 47.411 | 367 | 175 | 4 | 84 | 449 | 46 | 395 | 5.14e-114 | 348 |
| Msa0857800 | AT5G19560.5 | 47.411 | 367 | 175 | 4 | 84 | 449 | 46 | 395 | 5.14e-114 | 348 |
| Msa0857800 | AT5G19560.4 | 47.411 | 367 | 175 | 4 | 84 | 449 | 65 | 414 | 7.37e-114 | 348 |
| Msa0857800 | AT5G19560.2 | 45.921 | 331 | 161 | 4 | 84 | 413 | 65 | 378 | 2.62e-98 | 304 |
| Msa0857800 | AT1G31650.2 | 41.351 | 370 | 198 | 3 | 84 | 448 | 110 | 465 | 4.81e-95 | 301 |
| Msa0857800 | AT1G31650.1 | 41.351 | 370 | 198 | 3 | 84 | 448 | 138 | 493 | 2.30e-94 | 300 |
| Msa0857800 | AT4G00460.1 | 56.723 | 238 | 98 | 3 | 74 | 308 | 96 | 331 | 1.38e-80 | 256 |
| Msa0857800 | AT1G01700.5 | 59.729 | 221 | 86 | 2 | 77 | 294 | 111 | 331 | 1.17e-79 | 255 |
| Msa0857800 | AT1G01700.2 | 59.729 | 221 | 86 | 2 | 77 | 294 | 111 | 331 | 1.17e-79 | 255 |
| Msa0857800 | AT5G19560.3 | 44.604 | 278 | 136 | 4 | 173 | 449 | 5 | 265 | 5.34e-76 | 246 |
Find 128 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATGGCTGCTTTCAGTATT+TGG | 0.134248 | 5_4:+54316156 | None:intergenic |
| TAACATGGTTTCACAGAAAA+AGG | 0.190047 | 5_4:-54315138 | Msa0857800:CDS |
| TTCATCTGATTTGCTGCATT+TGG | 0.225466 | 5_4:+54317805 | None:intergenic |
| GGTCTTCTTCATTTCCTATT+AGG | 0.245693 | 5_4:-54317841 | Msa0857800:CDS |
| ACTCAACACAAAGCAAAATT+TGG | 0.247443 | 5_4:-54315083 | Msa0857800:CDS |
| TCTTGAGTAGCTTTCTAGTA+TGG | 0.255785 | 5_4:+54315265 | None:intergenic |
| ACACAACTGTTGCTATTTCT+AGG | 0.263163 | 5_4:+54314543 | None:intergenic |
| CAACATGTAGGAACTGTATT+TGG | 0.265120 | 5_4:-54317273 | Msa0857800:intron |
| AAACCTCAACGTCGCGGTTT+TGG | 0.279389 | 5_4:-54314972 | Msa0857800:CDS |
| TTGTTGAGTTAATGCCTTCT+TGG | 0.293497 | 5_4:-54317161 | Msa0857800:CDS |
| TTGTTATTGTTGTGGATAAA+AGG | 0.311337 | 5_4:+54315005 | None:intergenic |
| GAACTGTATTTGGACAATTA+TGG | 0.318046 | 5_4:-54317263 | Msa0857800:CDS |
| GCAAGGGGAACACGGGGTAC+TGG | 0.319386 | 5_4:+54316233 | None:intergenic |
| GTTGCACTGCTATGGAGTTT+TGG | 0.323799 | 5_4:-54316346 | Msa0857800:CDS |
| CAGCATTGCTTTGGATGAAA+TGG | 0.326844 | 5_4:-54316126 | Msa0857800:CDS |
| AGAAAGCTACTCAAGAGTTT+TGG | 0.328969 | 5_4:-54315258 | Msa0857800:CDS |
| TGGAAATCTATCTGAATGTT+TGG | 0.339488 | 5_4:+54315175 | None:intergenic |
| TATTTCCAATTGTCCTTCAA+TGG | 0.344917 | 5_4:+54314570 | None:intergenic |
| GACATAGTGCCCTTCCTAAT+AGG | 0.352007 | 5_4:+54317827 | None:intergenic |
| TTCATTGAAGCAGCGCTTCC+CGG | 0.357161 | 5_4:-54315594 | Msa0857800:CDS |
| TTATCATCAACTTGAGAAAC+AGG | 0.378270 | 5_4:+54317770 | None:intergenic |
| AGAAAAGTGGCAGAGAGAAA+TGG | 0.381993 | 5_4:-54317211 | Msa0857800:CDS |
| GGAAGTTCCAGAGTCCTATC+TGG | 0.382134 | 5_4:-54316105 | Msa0857800:CDS |
| GTCTATCAACAGCATTGCTT+TGG | 0.387793 | 5_4:-54316135 | Msa0857800:CDS |
| AGAGTGTTGTCAAATTATCT+TGG | 0.399409 | 5_4:-54314942 | Msa0857800:CDS |
| TTTGTTACTCAAAACACAAA+AGG | 0.406060 | 5_4:+54317999 | None:intergenic |
| CTCTAGTGCAACATGTTCAT+TGG | 0.407740 | 5_4:+54315790 | None:intergenic |
| TGAGAACCATTTGTATTAGT+AGG | 0.410346 | 5_4:-54314690 | Msa0857800:three_prime_UTR |
| TCTTAATATTGTCCCATTGA+AGG | 0.412423 | 5_4:-54314583 | Msa0857800:three_prime_UTR |
| TTGTCCCATTGAAGGACAAT+TGG | 0.413993 | 5_4:-54314575 | Msa0857800:three_prime_UTR |
| CATCTGGTGCCACAATTCCT+TGG | 0.414903 | 5_4:+54316315 | None:intergenic |
| CTGATTTCTCTTGCGAAAAG+AGG | 0.416366 | 5_4:+54316280 | None:intergenic |
| GGACATTGTGAAGGACTTCA+TGG | 0.423504 | 5_4:-54315669 | Msa0857800:CDS |
| CATAAATTGCGGCTTCTAAA+CGG | 0.424426 | 5_4:+54315759 | None:intergenic |
| TCTTGAGTTCTCGCTGAGAC+TGG | 0.430135 | 5_4:+54316211 | None:intergenic |
| CCCTTTGAAGGACTAATTAG+TGG | 0.432878 | 5_4:+54315038 | None:intergenic |
| CACAACTGTTGCTATTTCTA+GGG | 0.437779 | 5_4:+54314544 | None:intergenic |
| GTGAAGGACTTCATGGTTGA+TGG | 0.439958 | 5_4:-54315662 | Msa0857800:CDS |
| TAGAAGCCGCAATTTATGTA+TGG | 0.441628 | 5_4:-54315754 | Msa0857800:CDS |
| TTTAGATAGTTGCACTGCTA+TGG | 0.442885 | 5_4:-54316354 | Msa0857800:CDS |
| TCAGAATGGAAGAACGTGCT+TGG | 0.444622 | 5_4:-54315885 | Msa0857800:intron |
| CAAGGGGAACACGGGGTACT+GGG | 0.445741 | 5_4:+54316234 | None:intergenic |
| GGAGTTACCTCTCCCTTTGA+AGG | 0.445840 | 5_4:+54315026 | None:intergenic |
| ATTTCCAATTGTCCTTCAAT+GGG | 0.449132 | 5_4:+54314571 | None:intergenic |
| TCAGGATATGTTTGCCAAGA+AGG | 0.453625 | 5_4:+54317147 | None:intergenic |
| TGAATAAATAAATAAACAAA+TGG | 0.455047 | 5_4:+54314614 | None:intergenic |
| AAAAGGAGTTAGCACTGCTT+TGG | 0.462316 | 5_4:-54317504 | Msa0857800:CDS |
| CAGAATGGAAGAACGTGCTT+GGG | 0.465023 | 5_4:-54315884 | Msa0857800:CDS |
| TGTGAAACCATGTTAACCAT+TGG | 0.466695 | 5_4:+54315146 | None:intergenic |
| GAGGCTGATCCATCTGCATC+TGG | 0.467719 | 5_4:+54316299 | None:intergenic |
| GCAAGCACTCTTGAGAGAAC+TGG | 0.473659 | 5_4:+54315831 | None:intergenic |
| TCATTGAAGCAGCGCTTCCC+GGG | 0.475313 | 5_4:-54315593 | Msa0857800:CDS |
| CTGCTTGGTGAAGATATGTC+AGG | 0.475560 | 5_4:-54317533 | Msa0857800:CDS |
| ATCAGGAGGGGATATGATGA+AGG | 0.476878 | 5_4:-54317573 | Msa0857800:CDS |
| AGCATGAAACCTTGTTGCAT+TGG | 0.478930 | 5_4:+54315537 | None:intergenic |
| CTTGGGAAGGGTATCCAGAT+AGG | 0.479390 | 5_4:+54316091 | None:intergenic |
| ACCTCTTGCTTACTACCATC+AGG | 0.479748 | 5_4:+54317129 | None:intergenic |
| TAGATTTCCATTGGCTCCAA+TGG | 0.482149 | 5_4:-54315162 | Msa0857800:CDS |
| TTCTTCATTTCCTATTAGGA+AGG | 0.485913 | 5_4:-54317837 | Msa0857800:CDS |
| AATGGGTCTTGTAGTTCCAC+TGG | 0.490578 | 5_4:-54317908 | Msa0857800:CDS |
| GGTGAAGATATGTCAGGGTC+TGG | 0.491025 | 5_4:-54317527 | Msa0857800:CDS |
| TTGTTACTCAAAACACAAAA+GGG | 0.498312 | 5_4:+54318000 | None:intergenic |
| TTGTCGAGTTTACGTAGAGC+TGG | 0.504038 | 5_4:+54316482 | None:intergenic |
| TGATATTGTTGTTATTGTTG+TGG | 0.506831 | 5_4:+54314997 | None:intergenic |
| GAGACTGGCAAGGGGAACAC+GGG | 0.508238 | 5_4:+54316226 | None:intergenic |
| ACATTCAGATAGATTTCCAT+TGG | 0.512184 | 5_4:-54315171 | Msa0857800:CDS |
| GAAGTCCTTCACAATGTCCC+AGG | 0.512615 | 5_4:+54315673 | None:intergenic |
| GATATGTCAGGGTCTGGAAA+AGG | 0.513629 | 5_4:-54317521 | Msa0857800:CDS |
| TGAGACTGGCAAGGGGAACA+CGG | 0.513735 | 5_4:+54316225 | None:intergenic |
| ATTTAAGAGAGTGAGTTCAA+TGG | 0.515162 | 5_4:-54314653 | Msa0857800:three_prime_UTR |
| AATCTTCCTACTAATACAAA+TGG | 0.516262 | 5_4:+54314684 | None:intergenic |
| TGGAAAATCAAACCTTGGGA+AGG | 0.522872 | 5_4:+54316078 | None:intergenic |
| ATGTAGTTTGACTTAAACCC+GGG | 0.524605 | 5_4:+54315576 | None:intergenic |
| ACACCAAAACCGCGACGTTG+AGG | 0.531446 | 5_4:+54314969 | None:intergenic |
| GTATATTGACCAAGGAATTG+TGG | 0.532957 | 5_4:-54316324 | Msa0857800:CDS |
| ATCAGCGGCAAGAGGAGAAG+TGG | 0.535708 | 5_4:-54316262 | Msa0857800:CDS |
| ATGTTAACCATTGGAGCCAA+TGG | 0.540862 | 5_4:+54315155 | None:intergenic |
| GCCACTAATTAGTCCTTCAA+AGG | 0.542594 | 5_4:-54315039 | Msa0857800:CDS |
| GTGTTGTCAAATTATCTTGG+AGG | 0.544230 | 5_4:-54314939 | Msa0857800:CDS |
| ATGGATTGGCTTCTTTGTGT+TGG | 0.553290 | 5_4:-54317192 | Msa0857800:CDS |
| TCTTCATTTCCTATTAGGAA+GGG | 0.555428 | 5_4:-54317836 | Msa0857800:CDS |
| ACTTTGTAGTCGAACGGCTA+GGG | 0.555981 | 5_4:+54315699 | None:intergenic |
| CCACTAATTAGTCCTTCAAA+GGG | 0.557284 | 5_4:-54315038 | Msa0857800:CDS |
| AATTAGTCCTTCAAAGGGAG+AGG | 0.557362 | 5_4:-54315033 | Msa0857800:CDS |
| AGTTCTCGCTGAGACTGGCA+AGG | 0.560263 | 5_4:+54316216 | None:intergenic |
| AATTGCGGCTTCTAAACGGT+TGG | 0.562150 | 5_4:+54315763 | None:intergenic |
| GTGGTTTAGAGTGAGATCTC+TGG | 0.563305 | 5_4:+54315729 | None:intergenic |
| GACTTTGTAGTCGAACGGCT+AGG | 0.565228 | 5_4:+54315698 | None:intergenic |
| GGAAAATCAAACCTTGGGAA+GGG | 0.565938 | 5_4:+54316079 | None:intergenic |
| ATTGGCTCCAATGGTTAACA+TGG | 0.571176 | 5_4:-54315153 | Msa0857800:CDS |
| AGTGGCAGAGAGAAATGGAT+TGG | 0.572062 | 5_4:-54317206 | Msa0857800:CDS |
| GGGTTTAAGTCAAACTACAT+TGG | 0.572158 | 5_4:-54315573 | Msa0857800:CDS |
| GAAGGACTAATTAGTGGCAC+AGG | 0.574721 | 5_4:+54315044 | None:intergenic |
| GTCGAACGGCTAGGGTAAAG+TGG | 0.578967 | 5_4:+54315707 | None:intergenic |
| AGGTTTGCGAAGTTACTGCT+TGG | 0.585242 | 5_4:-54317548 | Msa0857800:CDS |
| AACAGTTGTGTGTTTGTGAA+AGG | 0.586920 | 5_4:-54314531 | Msa0857800:three_prime_UTR |
| TTCGACTACAAAGTCACCCT+GGG | 0.587847 | 5_4:-54315690 | Msa0857800:CDS |
| CTATCTGGATACCCTTCCCA+AGG | 0.591679 | 5_4:-54316090 | Msa0857800:intron |
| TATGACTTTGTAGGATCAGG+AGG | 0.593242 | 5_4:-54317587 | Msa0857800:intron |
| CAAGAGAAATCAGCGGCAAG+AGG | 0.598859 | 5_4:-54316270 | Msa0857800:CDS |
| GTTCGACTACAAAGTCACCC+TGG | 0.599211 | 5_4:-54315691 | Msa0857800:CDS |
| CATGTGAAAAGAAAGAAAAG+TGG | 0.603913 | 5_4:-54317224 | Msa0857800:CDS |
| AGGGTATCCAGATAGGACTC+TGG | 0.605877 | 5_4:+54316098 | None:intergenic |
| TGACTTTGTAGGATCAGGAG+GGG | 0.606695 | 5_4:-54317585 | Msa0857800:intron |
| GAGGGGATATGATGAAGGAA+AGG | 0.608465 | 5_4:-54317568 | Msa0857800:CDS |
| AATGTAGTTTGACTTAAACC+CGG | 0.610470 | 5_4:+54315575 | None:intergenic |
| TGCTTGGTGAAGATATGTCA+GGG | 0.618748 | 5_4:-54317532 | Msa0857800:CDS |
| GTGTGTTTGTGAAAGGCGTA+AGG | 0.619703 | 5_4:-54314524 | Msa0857800:three_prime_UTR |
| ATGACTTTGTAGGATCAGGA+GGG | 0.622503 | 5_4:-54317586 | Msa0857800:intron |
| TCCTGATGGTAGTAAGCAAG+AGG | 0.623727 | 5_4:-54317130 | Msa0857800:intron |
| GTTCTCGCTGAGACTGGCAA+GGG | 0.626034 | 5_4:+54316217 | None:intergenic |
| AGGGTGACTTTGTAGTCGAA+CGG | 0.627346 | 5_4:+54315693 | None:intergenic |
| CTGGCGCCATACATAAATTG+CGG | 0.627878 | 5_4:+54315748 | None:intergenic |
| ACAACTGTTGCTATTTCTAG+GGG | 0.628205 | 5_4:+54314545 | None:intergenic |
| TCTTGGCAAACATATCCTGA+TGG | 0.629177 | 5_4:-54317144 | Msa0857800:CDS |
| GTCACCCTGGGACATTGTGA+AGG | 0.632420 | 5_4:-54315678 | Msa0857800:CDS |
| TTCTCGCTGAGACTGGCAAG+GGG | 0.636812 | 5_4:+54316218 | None:intergenic |
| ATCTGAGCAACACGATCCAG+TGG | 0.638385 | 5_4:+54317892 | None:intergenic |
| ATCATTAAACCTCAACGTCG+CGG | 0.638867 | 5_4:-54314978 | Msa0857800:CDS |
| ATTGTGGCACCAGATGCAGA+TGG | 0.645033 | 5_4:-54316308 | Msa0857800:CDS |
| AGCGGCAAGAGGAGAAGTGG+TGG | 0.645482 | 5_4:-54316259 | Msa0857800:CDS |
| AAGTCCTTCACAATGTCCCA+GGG | 0.648270 | 5_4:+54315674 | None:intergenic |
| AGCAATGCTGTTGATAGACA+TGG | 0.660827 | 5_4:+54316139 | None:intergenic |
| TAGCAAGATCCAATGCAACA+AGG | 0.662550 | 5_4:-54315546 | Msa0857800:intron |
| AGACTGGCAAGGGGAACACG+GGG | 0.665916 | 5_4:+54316227 | None:intergenic |
| GCACTCTTGAGAGAACTGGT+CGG | 0.681945 | 5_4:+54315835 | None:intergenic |
| GAACGGCTAGGGTAAAGTGG+TGG | 0.692029 | 5_4:+54315710 | None:intergenic |
| AATGCTATTACTAATCTGTG+TGG | 0.708645 | 5_4:-54317473 | Msa0857800:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTTGGTAAAAA+TGG | - | chr5_4:54314609-54314628 | Msa0857800:three_prime_UTR | 10.0% |
| !! | TTCAATAAAGATTAATAAAT+AGG | - | chr5_4:54315515-54315534 | Msa0857800:intron | 10.0% |
| !! | TTCAATAAAGATTAATAAAT+AGG | - | chr5_4:54315515-54315534 | Msa0857800:intron | 10.0% |
| !!! | ATATTTTTTCTTTTTTTCAT+TGG | + | chr5_4:54317858-54317877 | None:intergenic | 10.0% |
| !! | TGAATAAATAAATAAACAAA+TGG | + | chr5_4:54317970-54317989 | None:intergenic | 10.0% |
| !!! | ACAAAGTCAATTTTTTTTTT+TGG | - | chr5_4:54314600-54314619 | Msa0857800:three_prime_UTR | 15.0% |
| !!! | AATTTTCAAAAGAGAAAAAA+TGG | - | chr5_4:54314655-54314674 | Msa0857800:three_prime_UTR | 15.0% |
| !!! | ATTTTCAAAAGAGAAAAAAT+GGG | - | chr5_4:54314656-54314675 | Msa0857800:three_prime_UTR | 15.0% |
| !!! | TTTTTTTTTGGTAAAAATGG+AGG | - | chr5_4:54314612-54314631 | Msa0857800:three_prime_UTR | 20.0% |
| !! | TACAAAGTCATAACATAATA+AGG | + | chr5_4:54314986-54315005 | None:intergenic | 20.0% |
| !! | TTATTATGTTATGACTTTGT+AGG | - | chr5_4:54314985-54315004 | Msa0857800:CDS | 20.0% |
| !!! | AGAAAATGTTAACTTTTTCT+TGG | - | chr5_4:54315180-54315199 | Msa0857800:CDS | 20.0% |
| !!! | TTTCTTACAATTTGTTCAAT+TGG | - | chr5_4:54315276-54315295 | Msa0857800:CDS | 20.0% |
| !!! | TTCTTACAATTTGTTCAATT+GGG | - | chr5_4:54315277-54315296 | Msa0857800:CDS | 20.0% |
| !! | GTACATTAAATTCACATATA+CGG | + | chr5_4:54315725-54315744 | None:intergenic | 20.0% |
| !! | TTAATTACCCTACTAAATAA+AGG | + | chr5_4:54316003-54316022 | None:intergenic | 20.0% |
| !! | AAGATCTCAATAGATTTATT+TGG | + | chr5_4:54316526-54316545 | None:intergenic | 20.0% |
| !! | ATTGTTGATACTATATAATC+CGG | - | chr5_4:54316594-54316613 | Msa0857800:intron | 20.0% |
| !!! | TGTTTCATTTTAAACATTTC+AGG | - | chr5_4:54317281-54317300 | Msa0857800:intron | 20.0% |
| ! | TTGTTACTCAAAACACAAAA+GGG | + | chr5_4:54314584-54314603 | None:intergenic | 25.0% |
| ! | TTTGTTACTCAAAACACAAA+AGG | + | chr5_4:54314585-54314604 | None:intergenic | 25.0% |
| ! | TTATGTTCTGTTTAGTGTTT+AGG | - | chr5_4:54314889-54314908 | Msa0857800:CDS | 25.0% |
| !! | TTGTAACACATATTGATAGT+AGG | - | chr5_4:54315142-54315161 | Msa0857800:CDS | 25.0% |
| !!! | AATGTTAACTTTTTCTTGGA+TGG | - | chr5_4:54315184-54315203 | Msa0857800:CDS | 25.0% |
| ! | ATGATTCAAATGTTGTGTTA+TGG | - | chr5_4:54315210-54315229 | Msa0857800:CDS | 25.0% |
| ! | GTACATCAAATTCACATATA+AGG | + | chr5_4:54315493-54315512 | None:intergenic | 25.0% |
| ! | AATTATTGATCAAAATCCGA+TGG | - | chr5_4:54315660-54315679 | Msa0857800:CDS | 25.0% |
| ! | GTAGTTTGATTGAAATAGAA+CGG | - | chr5_4:54315830-54315849 | Msa0857800:CDS | 25.0% |
| !!! | CAAATTTCGAGTTTTCAATT+TGG | + | chr5_4:54315887-54315906 | None:intergenic | 25.0% |
| ! | TTGATAAAAATGTCTGATCT+TGG | + | chr5_4:54316075-54316094 | None:intergenic | 25.0% |
| !! | GTATTTTATTCTTCCAATGT+AGG | - | chr5_4:54316141-54316160 | Msa0857800:CDS | 25.0% |
| !! | TACACTTTTCTCTTTGTAAA+AGG | - | chr5_4:54316200-54316219 | Msa0857800:CDS | 25.0% |
| ! | TATTTGGAAAATCAAACCTT+GGG | + | chr5_4:54316510-54316529 | None:intergenic | 25.0% |
| ! | TTATTTGGAAAATCAAACCT+TGG | + | chr5_4:54316511-54316530 | None:intergenic | 25.0% |
| ! | TAATGTATCATGTCTAATAC+CGG | + | chr5_4:54316616-54316635 | None:intergenic | 25.0% |
| ! | AAGTTCAAACAATGTATCAT+GGG | + | chr5_4:54316676-54316695 | None:intergenic | 25.0% |
| ! | AAAGTTCAAACAATGTATCA+TGG | + | chr5_4:54316677-54316696 | None:intergenic | 25.0% |
| ! | AAATAAGCTGAAATGGTTTA+TGG | + | chr5_4:54317167-54317186 | None:intergenic | 25.0% |
| ! | CTTATGAAAATAAGCTGAAA+TGG | + | chr5_4:54317174-54317193 | None:intergenic | 25.0% |
| ! | ATGTTAATGTGAAGTTGTTA+GGG | + | chr5_4:54317262-54317281 | None:intergenic | 25.0% |
| !! | TTTTAAACATTTCAGGATGT+TGG | - | chr5_4:54317288-54317307 | Msa0857800:intron | 25.0% |
| !! | TTGTTATTGTTGTGGATAAA+AGG | + | chr5_4:54317579-54317598 | None:intergenic | 25.0% |
| !! | TGATATTGTTGTTATTGTTG+TGG | + | chr5_4:54317587-54317606 | None:intergenic | 25.0% |
| ! | AATCTTCCTACTAATACAAA+TGG | + | chr5_4:54317900-54317919 | None:intergenic | 25.0% |
| AACAAGCAAAAAATGCAAGA+GGG | - | chr5_4:54314719-54314738 | Msa0857800:three_prime_UTR | 30.0% | |
| TTCTTCATTTCCTATTAGGA+AGG | - | chr5_4:54314744-54314763 | Msa0857800:three_prime_UTR | 30.0% | |
| TCTTCATTTCCTATTAGGAA+GGG | - | chr5_4:54314745-54314764 | Msa0857800:three_prime_UTR | 30.0% | |
| TTATCATCAACTTGAGAAAC+AGG | + | chr5_4:54314814-54314833 | None:intergenic | 30.0% | |
| !! | AGAAATTTTTGAGCTGATAC+TGG | + | chr5_4:54314845-54314864 | None:intergenic | 30.0% |
| AGTATCAGCTCAAAAATTTC+TGG | - | chr5_4:54314844-54314863 | Msa0857800:CDS | 30.0% | |
| ACACTAAACAGAACATAACA+AGG | + | chr5_4:54314887-54314906 | None:intergenic | 30.0% | |
| AATGCTATTACTAATCTGTG+TGG | - | chr5_4:54315108-54315127 | Msa0857800:CDS | 30.0% | |
| TATTACTAATCTGTGTGGTA+TGG | - | chr5_4:54315113-54315132 | Msa0857800:CDS | 30.0% | |
| AACCATAACCATTGTTAAGA+CGG | + | chr5_4:54315242-54315261 | None:intergenic | 30.0% | |
| GAACTGTATTTGGACAATTA+TGG | - | chr5_4:54315318-54315337 | Msa0857800:intron | 30.0% | |
| ! | CACTTTTCTTTCTTTTCACA+TGG | + | chr5_4:54315359-54315378 | None:intergenic | 30.0% |
| CATGTGAAAAGAAAGAAAAG+TGG | - | chr5_4:54315357-54315376 | Msa0857800:intron | 30.0% | |
| ATCATACAAAGTAGAGAGTA+GGG | + | chr5_4:54315541-54315560 | None:intergenic | 30.0% | |
| AATCATACAAAGTAGAGAGT+AGG | + | chr5_4:54315542-54315561 | None:intergenic | 30.0% | |
| ACTCTCTACTTTGTATGATT+AGG | - | chr5_4:54315542-54315561 | Msa0857800:intron | 30.0% | |
| CTCTCTACTTTGTATGATTA+GGG | - | chr5_4:54315543-54315562 | Msa0857800:intron | 30.0% | |
| GTCGTTTGATTGAAATAGAA+CGG | - | chr5_4:54315598-54315617 | Msa0857800:CDS | 30.0% | |
| ATCATACTAAGTAGAGAGTA+GGG | + | chr5_4:54315773-54315792 | None:intergenic | 30.0% | |
| AATCATACTAAGTAGAGAGT+AGG | + | chr5_4:54315774-54315793 | None:intergenic | 30.0% | |
| ACTCTCTACTTAGTATGATT+AGG | - | chr5_4:54315774-54315793 | Msa0857800:CDS | 30.0% | |
| CTCTCTACTTAGTATGATTA+GGG | - | chr5_4:54315775-54315794 | Msa0857800:CDS | 30.0% | |
| AGTAGTAGTAGTACTAGTAA+GGG | + | chr5_4:54315940-54315959 | None:intergenic | 30.0% | |
| TAGTAGTAGTAGTACTAGTA+AGG | + | chr5_4:54315941-54315960 | None:intergenic | 30.0% | |
| ATTACCCTACTAAATAAAGG+TGG | + | chr5_4:54316000-54316019 | None:intergenic | 30.0% | |
| CATTGTTTGAACTTTCAGAA+TGG | - | chr5_4:54316682-54316701 | Msa0857800:intron | 30.0% | |
| ! | AATGTAGTTTGACTTAAACC+CGG | + | chr5_4:54317009-54317028 | None:intergenic | 30.0% |
| ATTGTATCATCAACAGATCT+TGG | - | chr5_4:54317112-54317131 | Msa0857800:intron | 30.0% | |
| CATGTTAATGTGAAGTTGTT+AGG | + | chr5_4:54317263-54317282 | None:intergenic | 30.0% | |
| TGGAAATCTATCTGAATGTT+TGG | + | chr5_4:54317409-54317428 | None:intergenic | 30.0% | |
| ACATTCAGATAGATTTCCAT+TGG | - | chr5_4:54317410-54317429 | Msa0857800:intron | 30.0% | |
| TAACATGGTTTCACAGAAAA+AGG | - | chr5_4:54317443-54317462 | Msa0857800:intron | 30.0% | |
| ACTCAACACAAAGCAAAATT+TGG | - | chr5_4:54317498-54317517 | Msa0857800:CDS | 30.0% | |
| !! | AGAGTGTTGTCAAATTATCT+TGG | - | chr5_4:54317639-54317658 | Msa0857800:intron | 30.0% |
| !! | TCATTTTGTCTTGCTTTTCA+TGG | + | chr5_4:54317775-54317794 | None:intergenic | 30.0% |
| TGAGAACCATTTGTATTAGT+AGG | - | chr5_4:54317891-54317910 | Msa0857800:CDS | 30.0% | |
| ATTTAAGAGAGTGAGTTCAA+TGG | - | chr5_4:54317928-54317947 | Msa0857800:CDS | 30.0% | |
| TCTTAATATTGTCCCATTGA+AGG | - | chr5_4:54317998-54318017 | Msa0857800:five_prime_UTR | 30.0% | |
| ATTTCCAATTGTCCTTCAAT+GGG | + | chr5_4:54318013-54318032 | None:intergenic | 30.0% | |
| TATTTCCAATTGTCCTTCAA+TGG | + | chr5_4:54318014-54318033 | None:intergenic | 30.0% | |
| GAACAAGCAAAAAATGCAAG+AGG | - | chr5_4:54314718-54314737 | Msa0857800:three_prime_UTR | 35.0% | |
| GGTCTTCTTCATTTCCTATT+AGG | - | chr5_4:54314740-54314759 | Msa0857800:three_prime_UTR | 35.0% | |
| !! | TTCATCTGATTTGCTGCATT+TGG | + | chr5_4:54314779-54314798 | None:intergenic | 35.0% |
| TACACAATTGCAGCAAAGTA+TGG | + | chr5_4:54314925-54314944 | None:intergenic | 35.0% | |
| TGTTATGACTTTGTAGGATC+AGG | - | chr5_4:54314991-54315010 | Msa0857800:CDS | 35.0% | |
| TCAAATGTTGTGTTATGGTC+AGG | - | chr5_4:54315215-54315234 | Msa0857800:CDS | 35.0% | |
| CAAATGTTGTGTTATGGTCA+GGG | - | chr5_4:54315216-54315235 | Msa0857800:CDS | 35.0% | |
| CAACATGTAGGAACTGTATT+TGG | - | chr5_4:54315308-54315327 | Msa0857800:intron | 35.0% | |
| TTGTTGAGTTAATGCCTTCT+TGG | - | chr5_4:54315420-54315439 | Msa0857800:intron | 35.0% | |
| AACGGTCGATATTTCATGTT+TGG | - | chr5_4:54315616-54315635 | Msa0857800:CDS | 35.0% | |
| ! | TACCACCACCTTTATTTAGT+AGG | - | chr5_4:54315992-54316011 | Msa0857800:intron | 35.0% |
| ! | ACCACCACCTTTATTTAGTA+GGG | - | chr5_4:54315993-54316012 | Msa0857800:intron | 35.0% |
| TTTAGATAGTTGCACTGCTA+TGG | - | chr5_4:54316227-54316246 | Msa0857800:CDS | 35.0% | |
| !! | GAGTTTTGGTATATTGACCA+AGG | - | chr5_4:54316249-54316268 | Msa0857800:CDS | 35.0% |
| GTATATTGACCAAGGAATTG+TGG | - | chr5_4:54316257-54316276 | Msa0857800:CDS | 35.0% | |
| TGATACATTACAGAACGCTA+TGG | - | chr5_4:54316626-54316645 | Msa0857800:intron | 35.0% | |
| CATAAATTGCGGCTTCTAAA+CGG | + | chr5_4:54316825-54316844 | None:intergenic | 35.0% | |
| TAGAAGCCGCAATTTATGTA+TGG | - | chr5_4:54316827-54316846 | Msa0857800:intron | 35.0% | |
| ! | ATGTAGTTTGACTTAAACCC+GGG | + | chr5_4:54317008-54317027 | None:intergenic | 35.0% |
| GGGTTTAAGTCAAACTACAT+TGG | - | chr5_4:54317008-54317027 | Msa0857800:intron | 35.0% | |
| ATAAAGAGAAGCTTATGCAC+GGG | + | chr5_4:54317209-54317228 | None:intergenic | 35.0% | |
| CATAAAGAGAAGCTTATGCA+CGG | + | chr5_4:54317210-54317229 | None:intergenic | 35.0% | |
| ! | TCTTGAGTAGCTTTCTAGTA+TGG | + | chr5_4:54317319-54317338 | None:intergenic | 35.0% |
| ! | AGAAAGCTACTCAAGAGTTT+TGG | - | chr5_4:54317323-54317342 | Msa0857800:intron | 35.0% |
| TGTGAAACCATGTTAACCAT+TGG | + | chr5_4:54317438-54317457 | None:intergenic | 35.0% | |
| CCACTAATTAGTCCTTCAAA+GGG | - | chr5_4:54317543-54317562 | Msa0857800:CDS | 35.0% | |
| GTGTTGTCAAATTATCTTGG+AGG | - | chr5_4:54317642-54317661 | Msa0857800:intron | 35.0% | |
| ! | TGTTCTGTTCTTTTGCAACT+TGG | + | chr5_4:54317726-54317745 | None:intergenic | 35.0% |
| !! | ACAACTGTTGCTATTTCTAG+GGG | + | chr5_4:54318039-54318058 | None:intergenic | 35.0% |
| !! | CACAACTGTTGCTATTTCTA+GGG | + | chr5_4:54318040-54318059 | None:intergenic | 35.0% |
| !! | ACACAACTGTTGCTATTTCT+AGG | + | chr5_4:54318041-54318060 | None:intergenic | 35.0% |
| AACAGTTGTGTGTTTGTGAA+AGG | - | chr5_4:54318050-54318069 | Msa0857800:five_prime_UTR | 35.0% | |
| TATGACTTTGTAGGATCAGG+AGG | - | chr5_4:54314994-54315013 | Msa0857800:CDS | 40.0% | |
| ATGACTTTGTAGGATCAGGA+GGG | - | chr5_4:54314995-54315014 | Msa0857800:CDS | 40.0% | |
| ! | TGCTTGGTGAAGATATGTCA+GGG | - | chr5_4:54315049-54315068 | Msa0857800:CDS | 40.0% |
| AAAAGGAGTTAGCACTGCTT+TGG | - | chr5_4:54315077-54315096 | Msa0857800:CDS | 40.0% | |
| !! | TGGGATTTGTTGCAACATGT+AGG | - | chr5_4:54315296-54315315 | Msa0857800:intron | 40.0% |
| ! | TCTTTCTTTTCACATGGCAC+AGG | + | chr5_4:54315353-54315372 | None:intergenic | 40.0% |
| AGAAAAGTGGCAGAGAGAAA+TGG | - | chr5_4:54315370-54315389 | Msa0857800:intron | 40.0% | |
| !! | ATGGATTGGCTTCTTTGTGT+TGG | - | chr5_4:54315389-54315408 | Msa0857800:intron | 40.0% |
| TCAGGATATGTTTGCCAAGA+AGG | + | chr5_4:54315437-54315456 | None:intergenic | 40.0% | |
| TCTTGGCAAACATATCCTGA+TGG | - | chr5_4:54315437-54315456 | Msa0857800:intron | 40.0% | |
| TCAAAATCCGATGGTTCAGA+TGG | - | chr5_4:54315669-54315688 | Msa0857800:CDS | 40.0% | |
| CTTACTACCATCTGAACCAT+CGG | + | chr5_4:54315679-54315698 | None:intergenic | 40.0% | |
| TTCAGATGGTAGTAAGCTAG+CGG | - | chr5_4:54315683-54315702 | Msa0857800:CDS | 40.0% | |
| ACCCTACTAAATAAAGGTGG+TGG | + | chr5_4:54315997-54316016 | None:intergenic | 40.0% | |
| TCTAACATGTTCTGTTCTGC+AGG | - | chr5_4:54316035-54316054 | Msa0857800:intron | 40.0% | |
| ! | TTCCAATGTAGGCTAGTTCT+CGG | - | chr5_4:54316152-54316171 | Msa0857800:CDS | 40.0% |
| CTGATTTCTCTTGCGAAAAG+AGG | + | chr5_4:54316304-54316323 | None:intergenic | 40.0% | |
| ! | CTTTTCGCAAGAGAAATCAG+CGG | - | chr5_4:54316304-54316323 | Msa0857800:CDS | 40.0% |
| ! | ACATGGCTGCTTTCAGTATT+TGG | + | chr5_4:54316428-54316447 | None:intergenic | 40.0% |
| ! | AGCAATGCTGTTGATAGACA+TGG | + | chr5_4:54316445-54316464 | None:intergenic | 40.0% |
| GTCTATCAACAGCATTGCTT+TGG | - | chr5_4:54316446-54316465 | Msa0857800:intron | 40.0% | |
| ! | CAGCATTGCTTTGGATGAAA+TGG | - | chr5_4:54316455-54316474 | Msa0857800:intron | 40.0% |
| GGAAAATCAAACCTTGGGAA+GGG | + | chr5_4:54316505-54316524 | None:intergenic | 40.0% | |
| TGGAAAATCAAACCTTGGGA+AGG | + | chr5_4:54316506-54316525 | None:intergenic | 40.0% | |
| CTCTAGTGCAACATGTTCAT+TGG | + | chr5_4:54316794-54316813 | None:intergenic | 40.0% | |
| TAGCAAGATCCAATGCAACA+AGG | - | chr5_4:54317035-54317054 | Msa0857800:intron | 40.0% | |
| AGCATGAAACCTTGTTGCAT+TGG | + | chr5_4:54317047-54317066 | None:intergenic | 40.0% | |
| TAAAGAGAAGCTTATGCACG+GGG | + | chr5_4:54317208-54317227 | None:intergenic | 40.0% | |
| !! | TAGATTTCCATTGGCTCCAA+TGG | - | chr5_4:54317419-54317438 | Msa0857800:intron | 40.0% |
| ATGTTAACCATTGGAGCCAA+TGG | + | chr5_4:54317429-54317448 | None:intergenic | 40.0% | |
| ! | ATTGGCTCCAATGGTTAACA+TGG | - | chr5_4:54317428-54317447 | Msa0857800:intron | 40.0% |
| GCCACTAATTAGTCCTTCAA+AGG | - | chr5_4:54317542-54317561 | Msa0857800:CDS | 40.0% | |
| ! | CCCTTTGAAGGACTAATTAG+TGG | + | chr5_4:54317546-54317565 | None:intergenic | 40.0% |
| AATTAGTCCTTCAAAGGGAG+AGG | - | chr5_4:54317548-54317567 | Msa0857800:CDS | 40.0% | |
| ATCATTAAACCTCAACGTCG+CGG | - | chr5_4:54317603-54317622 | Msa0857800:intron | 40.0% | |
| TTGTCCCATTGAAGGACAAT+TGG | - | chr5_4:54318006-54318025 | Msa0857800:five_prime_UTR | 40.0% | |
| ! | AATGGGTCTTGTAGTTCCAC+TGG | - | chr5_4:54314673-54314692 | Msa0857800:three_prime_UTR | 45.0% |
| GACATAGTGCCCTTCCTAAT+AGG | + | chr5_4:54314757-54314776 | None:intergenic | 45.0% | |
| TGACTTTGTAGGATCAGGAG+GGG | - | chr5_4:54314996-54315015 | Msa0857800:CDS | 45.0% | |
| ATCAGGAGGGGATATGATGA+AGG | - | chr5_4:54315008-54315027 | Msa0857800:CDS | 45.0% | |
| GAGGGGATATGATGAAGGAA+AGG | - | chr5_4:54315013-54315032 | Msa0857800:CDS | 45.0% | |
| AGGTTTGCGAAGTTACTGCT+TGG | - | chr5_4:54315033-54315052 | Msa0857800:CDS | 45.0% | |
| ! | CTGCTTGGTGAAGATATGTC+AGG | - | chr5_4:54315048-54315067 | Msa0857800:CDS | 45.0% |
| GATATGTCAGGGTCTGGAAA+AGG | - | chr5_4:54315060-54315079 | Msa0857800:CDS | 45.0% | |
| GGCCGTCTTAACAATGGTTA+TGG | - | chr5_4:54315237-54315256 | Msa0857800:CDS | 45.0% | |
| AGTGGCAGAGAGAAATGGAT+TGG | - | chr5_4:54315375-54315394 | Msa0857800:intron | 45.0% | |
| TCCTGATGGTAGTAAGCAAG+AGG | - | chr5_4:54315451-54315470 | Msa0857800:intron | 45.0% | |
| ACCTCTTGCTTACTACCATC+AGG | + | chr5_4:54315455-54315474 | None:intergenic | 45.0% | |
| TTGTCGAGTTTACGTAGAGC+TGG | + | chr5_4:54316102-54316121 | None:intergenic | 45.0% | |
| ! | TACCGAGAACTAGCCTACAT+TGG | + | chr5_4:54316157-54316176 | None:intergenic | 45.0% |
| ! | GTTGCACTGCTATGGAGTTT+TGG | - | chr5_4:54316235-54316254 | Msa0857800:CDS | 45.0% |
| TCAGAATGGAAGAACGTGCT+TGG | - | chr5_4:54316696-54316715 | Msa0857800:intron | 45.0% | |
| CAGAATGGAAGAACGTGCTT+GGG | - | chr5_4:54316697-54316716 | Msa0857800:intron | 45.0% | |
| AATTGCGGCTTCTAAACGGT+TGG | + | chr5_4:54316821-54316840 | None:intergenic | 45.0% | |
| CTGGCGCCATACATAAATTG+CGG | + | chr5_4:54316836-54316855 | None:intergenic | 45.0% | |
| ! | GTGGTTTAGAGTGAGATCTC+TGG | + | chr5_4:54316855-54316874 | None:intergenic | 45.0% |
| ACTTTGTAGTCGAACGGCTA+GGG | + | chr5_4:54316885-54316904 | None:intergenic | 45.0% | |
| AGGGTGACTTTGTAGTCGAA+CGG | + | chr5_4:54316891-54316910 | None:intergenic | 45.0% | |
| TTCGACTACAAAGTCACCCT+GGG | - | chr5_4:54316891-54316910 | Msa0857800:intron | 45.0% | |
| AAGTCCTTCACAATGTCCCA+GGG | + | chr5_4:54316910-54316929 | None:intergenic | 45.0% | |
| GGACATTGTGAAGGACTTCA+TGG | - | chr5_4:54316912-54316931 | Msa0857800:intron | 45.0% | |
| GTGAAGGACTTCATGGTTGA+TGG | - | chr5_4:54316919-54316938 | Msa0857800:intron | 45.0% | |
| !!! | CTCAAGAGTTTTGGAGAGCA+TGG | - | chr5_4:54317332-54317351 | Msa0857800:intron | 45.0% |
| GAAGGACTAATTAGTGGCAC+AGG | + | chr5_4:54317540-54317559 | None:intergenic | 45.0% | |
| ATCTGAGCAACACGATCCAG+TGG | + | chr5_4:54314692-54314711 | None:intergenic | 50.0% | |
| GGTGAAGATATGTCAGGGTC+TGG | - | chr5_4:54315054-54315073 | Msa0857800:CDS | 50.0% | |
| !! | CATCTGGTGCCACAATTCCT+TGG | + | chr5_4:54316269-54316288 | None:intergenic | 50.0% |
| ATTGTGGCACCAGATGCAGA+TGG | - | chr5_4:54316273-54316292 | Msa0857800:CDS | 50.0% | |
| CAAGAGAAATCAGCGGCAAG+AGG | - | chr5_4:54316311-54316330 | Msa0857800:CDS | 50.0% | |
| TCTTGAGTTCTCGCTGAGAC+TGG | + | chr5_4:54316373-54316392 | None:intergenic | 50.0% | |
| GGAAGTTCCAGAGTCCTATC+TGG | - | chr5_4:54316476-54316495 | Msa0857800:CDS | 50.0% | |
| ! | AGGGTATCCAGATAGGACTC+TGG | + | chr5_4:54316486-54316505 | None:intergenic | 50.0% |
| !! | CTTGGGAAGGGTATCCAGAT+AGG | + | chr5_4:54316493-54316512 | None:intergenic | 50.0% |
| CTATCTGGATACCCTTCCCA+AGG | - | chr5_4:54316491-54316510 | Msa0857800:CDS | 50.0% | |
| GCACTCTTGAGAGAACTGGT+CGG | + | chr5_4:54316749-54316768 | None:intergenic | 50.0% | |
| GCAAGCACTCTTGAGAGAAC+TGG | + | chr5_4:54316753-54316772 | None:intergenic | 50.0% | |
| GACTTTGTAGTCGAACGGCT+AGG | + | chr5_4:54316886-54316905 | None:intergenic | 50.0% | |
| GTTCGACTACAAAGTCACCC+TGG | - | chr5_4:54316890-54316909 | Msa0857800:intron | 50.0% | |
| GAAGTCCTTCACAATGTCCC+AGG | + | chr5_4:54316911-54316930 | None:intergenic | 50.0% | |
| TTCATTGAAGCAGCGCTTCC+CGG | - | chr5_4:54316987-54317006 | Msa0857800:intron | 50.0% | |
| ! | AAGCTTATGCACGGGGTACT+GGG | + | chr5_4:54317201-54317220 | None:intergenic | 50.0% |
| GGAGTTACCTCTCCCTTTGA+AGG | + | chr5_4:54317558-54317577 | None:intergenic | 50.0% | |
| ! | AAACCTCAACGTCGCGGTTT+TGG | - | chr5_4:54317609-54317628 | Msa0857800:intron | 50.0% |
| GGTCAGGGCCGTCTTAACAA+TGG | - | chr5_4:54315231-54315250 | Msa0857800:CDS | 55.0% | |
| GAGGCTGATCCATCTGCATC+TGG | + | chr5_4:54316285-54316304 | None:intergenic | 55.0% | |
| ATCAGCGGCAAGAGGAGAAG+TGG | - | chr5_4:54316319-54316338 | Msa0857800:CDS | 55.0% | |
| TGAGACTGGCAAGGGGAACA+CGG | + | chr5_4:54316359-54316378 | None:intergenic | 55.0% | |
| TTCTCGCTGAGACTGGCAAG+GGG | + | chr5_4:54316366-54316385 | None:intergenic | 55.0% | |
| GTTCTCGCTGAGACTGGCAA+GGG | + | chr5_4:54316367-54316386 | None:intergenic | 55.0% | |
| AGTTCTCGCTGAGACTGGCA+AGG | + | chr5_4:54316368-54316387 | None:intergenic | 55.0% | |
| GAACGGCTAGGGTAAAGTGG+TGG | + | chr5_4:54316874-54316893 | None:intergenic | 55.0% | |
| GTCGAACGGCTAGGGTAAAG+TGG | + | chr5_4:54316877-54316896 | None:intergenic | 55.0% | |
| GTCACCCTGGGACATTGTGA+AGG | - | chr5_4:54316903-54316922 | Msa0857800:intron | 55.0% | |
| TCATTGAAGCAGCGCTTCCC+GGG | - | chr5_4:54316988-54317007 | Msa0857800:intron | 55.0% | |
| GAAGCTTATGCACGGGGTAC+TGG | + | chr5_4:54317202-54317221 | None:intergenic | 55.0% | |
| ACACCAAAACCGCGACGTTG+AGG | + | chr5_4:54317615-54317634 | None:intergenic | 55.0% | |
| AGCGGCAAGAGGAGAAGTGG+TGG | - | chr5_4:54316322-54316341 | Msa0857800:CDS | 60.0% | |
| ! | CAAGGGGAACACGGGGTACT+GGG | + | chr5_4:54316350-54316369 | None:intergenic | 60.0% |
| AGACTGGCAAGGGGAACACG+GGG | + | chr5_4:54316357-54316376 | None:intergenic | 60.0% | |
| GAGACTGGCAAGGGGAACAC+GGG | + | chr5_4:54316358-54316377 | None:intergenic | 60.0% | |
| GCAAGGGGAACACGGGGTAC+TGG | + | chr5_4:54316351-54316370 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 54314524 | 54318079 | 54314524 | ID=Msa0857800;Name=Msa0857800 |
| chr5_4 | mRNA | 54314524 | 54318079 | 54314524 | ID=Msa0857800-mRNA-1;Parent=Msa0857800;Name=Msa0857800-mRNA-1;_AED=0.05;_eAED=0.05;_QI=104|1|1|1|1|1|7|285|576 |
| chr5_4 | exon | 54314524 | 54315300 | 54314524 | ID=Msa0857800-mRNA-1:exon:16793;Parent=Msa0857800-mRNA-1 |
| chr5_4 | exon | 54315547 | 54315903 | 54315547 | ID=Msa0857800-mRNA-1:exon:16792;Parent=Msa0857800-mRNA-1 |
| chr5_4 | exon | 54316091 | 54316381 | 54316091 | ID=Msa0857800-mRNA-1:exon:16791;Parent=Msa0857800-mRNA-1 |
| chr5_4 | exon | 54316472 | 54316546 | 54316472 | ID=Msa0857800-mRNA-1:exon:16790;Parent=Msa0857800-mRNA-1 |
| chr5_4 | exon | 54317131 | 54317285 | 54317131 | ID=Msa0857800-mRNA-1:exon:16789;Parent=Msa0857800-mRNA-1 |
| chr5_4 | exon | 54317474 | 54317596 | 54317474 | ID=Msa0857800-mRNA-1:exon:16788;Parent=Msa0857800-mRNA-1 |
| chr5_4 | exon | 54317738 | 54318079 | 54317738 | ID=Msa0857800-mRNA-1:exon:16787;Parent=Msa0857800-mRNA-1 |
| chr5_4 | five_prime_UTR | 54317976 | 54318079 | 54317976 | ID=Msa0857800-mRNA-1:five_prime_utr;Parent=Msa0857800-mRNA-1 |
| chr5_4 | CDS | 54317738 | 54317975 | 54317738 | ID=Msa0857800-mRNA-1:cds;Parent=Msa0857800-mRNA-1 |
| chr5_4 | CDS | 54317474 | 54317596 | 54317474 | ID=Msa0857800-mRNA-1:cds;Parent=Msa0857800-mRNA-1 |
| chr5_4 | CDS | 54317131 | 54317285 | 54317131 | ID=Msa0857800-mRNA-1:cds;Parent=Msa0857800-mRNA-1 |
| chr5_4 | CDS | 54316472 | 54316546 | 54316472 | ID=Msa0857800-mRNA-1:cds;Parent=Msa0857800-mRNA-1 |
| chr5_4 | CDS | 54316091 | 54316381 | 54316091 | ID=Msa0857800-mRNA-1:cds;Parent=Msa0857800-mRNA-1 |
| chr5_4 | CDS | 54315547 | 54315903 | 54315547 | ID=Msa0857800-mRNA-1:cds;Parent=Msa0857800-mRNA-1 |
| chr5_4 | CDS | 54314809 | 54315300 | 54314809 | ID=Msa0857800-mRNA-1:cds;Parent=Msa0857800-mRNA-1 |
| chr5_4 | three_prime_UTR | 54314524 | 54314808 | 54314524 | ID=Msa0857800-mRNA-1:three_prime_utr;Parent=Msa0857800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
