AlfalfaGEDB | Msa0165840

M. sativa cultivar zhongmu-4 / Msa0165840

KEGG: K18636
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0165840	PNY02321.1	85.588	340	45	2	1	336	1	340	0.0	559

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0165840	sp\|Q84M91\|TANB_ARATH	50.133	377	126	10	1	321	1	371	8.20e-101	307

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0165840	A0A2K3NH04	85.588	340	45	2	1	336	1	340	0.0	559

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0015570	Msa0165840	0.802428	5.638070e-49	-8.615850e-47
Msa0016530	Msa0165840	0.818272	2.137899e-52	-8.615850e-47
Msa0027800	Msa0165840	0.823630	1.249306e-53	-8.615850e-47
Msa0030070	Msa0165840	0.834545	2.818172e-56	-8.615850e-47
Msa0030690	Msa0165840	0.807250	5.540803e-50	-8.615850e-47
Msa0032970	Msa0165840	0.894376	2.612977e-75	-8.615850e-47
Msa0032980	Msa0165840	0.834317	3.214989e-56	-8.615850e-47
Msa0040640	Msa0165840	0.829711	4.417517e-55	-8.615850e-47
Msa0050150	Msa0165840	0.824033	1.004703e-53	-8.615850e-47
Msa0063190	Msa0165840	0.801586	8.397665e-49	-8.615850e-47
Msa0067380	Msa0165840	0.807699	4.448499e-50	-8.615850e-47
Msa0078130	Msa0165840	0.813986	1.938535e-51	-8.615850e-47
Msa0090440	Msa0165840	0.815228	1.029348e-51	-8.615850e-47
Msa0091350	Msa0165840	0.858304	9.028805e-63	-8.615850e-47
Msa0093860	Msa0165840	0.805218	1.484195e-49	-8.615850e-47
Msa0094180	Msa0165840	0.806140	9.506185e-50	-8.615850e-47
Msa0100600	Msa0165840	0.815915	7.238433e-52	-8.615850e-47
Msa0106630	Msa0165840	0.838728	2.420233e-57	-8.615850e-47
Msa0125590	Msa0165840	0.858695	6.906995e-63	-8.615850e-47
Msa0127340	Msa0165840	0.858845	6.228948e-63	-8.615850e-47
Msa0140380	Msa0165840	0.821871	3.205945e-53	-8.615850e-47
Msa0153210	Msa0165840	0.838119	3.474675e-57	-8.615850e-47
Msa0156050	Msa0165840	0.804093	2.548347e-49	-8.615850e-47
Msa0156090	Msa0165840	0.810803	9.612341e-51	-8.615850e-47
Msa0165830	Msa0165840	0.827244	1.741482e-54	-8.615850e-47
Msa0165840	Msa0170070	0.836279	1.027152e-56	-8.615850e-47
Msa0165840	Msa0184700	0.831282	1.823841e-55	-8.615850e-47
Msa0165840	Msa0186180	0.800940	1.138623e-48	-8.615850e-47
Msa0165840	Msa0204970	0.828860	7.108721e-55	-8.615850e-47
Msa0165840	Msa0225800	0.818694	1.715226e-52	-8.615850e-47
Msa0165840	Msa0249870	0.814454	1.528358e-51	-8.615850e-47
Msa0165840	Msa0260630	0.826263	2.985517e-54	-8.615850e-47
Msa0165840	Msa0272260	0.809629	1.721218e-50	-8.615850e-47
Msa0165840	Msa0281540	0.857548	1.513974e-62	-8.615850e-47
Msa0165840	Msa0320580	0.850928	1.236355e-60	-8.615850e-47
Msa0165840	Msa0341680	0.820199	7.783196e-53	-8.615850e-47
Msa0165840	Msa0344110	0.853427	2.407362e-61	-8.615850e-47
Msa0165840	Msa0373170	0.839597	1.441089e-57	-8.615850e-47
Msa0165840	Msa0373590	0.813485	2.499946e-51	-8.615850e-47
Msa0165840	Msa0383000	0.803830	2.891213e-49	-8.615850e-47
Msa0165840	Msa0412130	0.811862	5.661036e-51	-8.615850e-47
Msa0165840	Msa0415820	0.805472	1.313122e-49	-8.615850e-47
Msa0165840	Msa0420430	0.827724	1.335654e-54	-8.615850e-47
Msa0165840	Msa0421130	0.809125	2.208507e-50	-8.615850e-47
Msa0165840	Msa0421750	0.825024	5.871470e-54	-8.615850e-47
Msa0165840	Msa0433150	0.815718	8.007457e-52	-8.615850e-47
Msa0165840	Msa0433760	0.857258	1.844646e-62	-8.615850e-47
Msa0165840	Msa0461550	0.820914	5.331039e-53	-8.615850e-47
Msa0165840	Msa0466520	0.847475	1.129956e-59	-8.615850e-47
Msa0165840	Msa0467690	0.847652	1.009602e-59	-8.615850e-47
Msa0165840	Msa0477630	0.854149	1.491942e-61	-8.615850e-47
Msa0165840	Msa0478140	0.822542	2.240580e-53	-8.615850e-47
Msa0165840	Msa0478200	0.818164	2.261003e-52	-8.615850e-47
Msa0165840	Msa0480730	0.844652	6.621139e-59	-8.615850e-47
Msa0165840	Msa0503990	0.801742	7.798616e-49	-8.615850e-47
Msa0165840	Msa0506880	0.814624	1.401412e-51	-8.615850e-47
Msa0165840	Msa0507810	0.853635	2.097844e-61	-8.615850e-47
Msa0165840	Msa0507820	0.864414	1.237264e-64	-8.615850e-47
Msa0165840	Msa0507920	0.845431	4.077788e-59	-8.615850e-47
Msa0165840	Msa0512530	0.808011	3.819617e-50	-8.615850e-47
Msa0165840	Msa0513080	0.828392	9.221430e-55	-8.615850e-47
Msa0165840	Msa0513560	0.801281	9.694573e-49	-8.615850e-47
Msa0165840	Msa0514020	0.842558	2.402864e-58	-8.615850e-47
Msa0165840	Msa0520870	0.808519	2.975850e-50	-8.615850e-47
Msa0165840	Msa0521680	0.841534	4.483329e-58	-8.615850e-47
Msa0165840	Msa0527850	0.825396	4.796502e-54	-8.615850e-47
Msa0165840	Msa0541740	0.845066	5.120852e-59	-8.615850e-47
Msa0165840	Msa0544410	0.850622	1.507719e-60	-8.615850e-47
Msa0165840	Msa0553750	0.825775	3.899913e-54	-8.615850e-47
Msa0165840	Msa0554300	0.879447	1.236590e-69	-8.615850e-47
Msa0165840	Msa0557850	0.810740	9.918567e-51	-8.615850e-47
Msa0165840	Msa0559100	0.811820	5.780778e-51	-8.615850e-47
Msa0165840	Msa0560570	0.806095	9.713760e-50	-8.615850e-47
Msa0165840	Msa0561560	0.870892	1.035030e-66	-8.615850e-47
Msa0165840	Msa0563900	0.801626	8.239709e-49	-8.615850e-47
Msa0165840	Msa0564980	0.833767	4.414402e-56	-8.615850e-47
Msa0165840	Msa0572830	0.851039	1.150190e-60	-8.615850e-47
Msa0165840	Msa0575710	0.822014	2.971474e-53	-8.615850e-47
Msa0165840	Msa0582460	0.828426	9.050354e-55	-8.615850e-47
Msa0165840	Msa0586200	0.823772	1.156640e-53	-8.615850e-47
Msa0165840	Msa0607330	0.822583	2.191748e-53	-8.615850e-47
Msa0165840	Msa0607800	0.805386	1.368741e-49	-8.615850e-47
Msa0165840	Msa0608350	0.861236	1.182631e-63	-8.615850e-47
Msa0165840	Msa0613630	0.837746	4.333985e-57	-8.615850e-47
Msa0165840	Msa0615630	0.829698	4.450926e-55	-8.615850e-47
Msa0165840	Msa0620500	0.844084	9.409186e-59	-8.615850e-47
Msa0165840	Msa0620510	0.805061	1.601366e-49	-8.615850e-47
Msa0165840	Msa0639190	0.801457	8.924628e-49	-8.615850e-47
Msa0165840	Msa0640800	0.824411	8.190509e-54	-8.615850e-47
Msa0165840	Msa0645340	0.801463	8.896507e-49	-8.615850e-47
Msa0165840	Msa0647440	0.863684	2.087521e-64	-8.615850e-47
Msa0165840	Msa0648040	0.809497	1.838115e-50	-8.615850e-47
Msa0165840	Msa0648760	0.888217	7.182331e-73	-8.615850e-47
Msa0165840	Msa0653160	0.814796	1.283754e-51	-8.615850e-47
Msa0165840	Msa0654740	0.847303	1.259652e-59	-8.615850e-47
Msa0165840	Msa0657210	0.833006	6.830822e-56	-8.615850e-47
Msa0165840	Msa0659200	0.802034	6.793530e-49	-8.615850e-47
Msa0165840	Msa0663290	0.812416	4.286883e-51	-8.615850e-47
Msa0165840	Msa0664070	0.813618	2.336994e-51	-8.615850e-47
Msa0165840	Msa0687090	0.801889	7.277114e-49	-8.615850e-47
Msa0165840	Msa0688620	0.863263	2.821034e-64	-8.615850e-47
Msa0165840	Msa0690320	0.868059	8.652563e-66	-8.615850e-47
Msa0165840	Msa0690740	0.817221	3.689947e-52	-8.615850e-47
Msa0165840	Msa0691270	0.879142	1.585454e-69	-8.615850e-47
Msa0165840	Msa0701250	0.841921	3.542605e-58	-8.615850e-47
Msa0165840	Msa0707260	0.814878	1.231320e-51	-8.615850e-47
Msa0165840	Msa0714520	0.819637	1.046055e-52	-8.615850e-47
Msa0165840	Msa0717900	0.860533	1.933236e-63	-8.615850e-47
Msa0165840	Msa0718040	0.813699	2.242980e-51	-8.615850e-47
Msa0165840	Msa0720280	0.844007	9.870636e-59	-8.615850e-47
Msa0165840	Msa0749190	0.858267	9.265378e-63	-8.615850e-47
Msa0165840	Msa0750520	0.861799	7.960614e-64	-8.615850e-47
Msa0165840	Msa0780910	0.802600	5.194634e-49	-8.615850e-47
Msa0165840	Msa0803140	0.842645	2.278695e-58	-8.615850e-47
Msa0165840	Msa0816080	0.861422	1.037661e-63	-8.615850e-47
Msa0165840	Msa0817360	0.826809	2.213066e-54	-8.615850e-47
Msa0165840	Msa0821160	0.819033	1.436280e-52	-8.615850e-47
Msa0165840	Msa0837680	0.845520	3.859397e-59	-8.615850e-47
Msa0165840	Msa0841500	0.831940	1.255640e-55	-8.615850e-47
Msa0165840	Msa0857800	0.800639	1.311287e-48	-8.615850e-47
Msa0165840	Msa0857890	0.819278	1.263440e-52	-8.615850e-47
Msa0165840	Msa0861440	0.840462	8.570481e-58	-8.615850e-47
Msa0165840	Msa0879920	0.814655	1.379526e-51	-8.615850e-47
Msa0165840	Msa0900090	0.848406	6.254849e-60	-8.615850e-47
Msa0165840	Msa0909760	0.836649	8.268331e-57	-8.615850e-47
Msa0165840	Msa0965470	0.827590	1.438421e-54	-8.615850e-47
Msa0165840	Msa0999950	0.815474	9.074631e-52	-8.615850e-47
Msa0165840	Msa1000780	0.801043	1.084607e-48	-8.615850e-47
Msa0165840	Msa1000970	0.817202	3.726398e-52	-8.615850e-47
Msa0165840	Msa1008670	0.844829	5.933784e-59	-8.615850e-47
Msa0165840	Msa1033920	0.819549	1.095591e-52	-8.615850e-47
Msa0165840	Msa1035570	0.805667	1.194957e-49	-8.615850e-47
Msa0165840	Msa1060900	0.805587	1.242327e-49	-8.615850e-47
Msa0165840	Msa1071410	0.862039	6.720606e-64	-8.615850e-47
Msa0165840	Msa1076020	0.819234	1.292751e-52	-8.615850e-47
Msa0165840	Msa1078990	0.803572	3.269294e-49	-8.615850e-47
Msa0165840	Msa1079640	0.809257	2.069184e-50	-8.615850e-47
Msa0165840	Msa1082380	0.852971	3.251180e-61	-8.615850e-47
Msa0165840	Msa1098060	0.802177	6.349597e-49	-8.615850e-47
Msa0165840	Msa1104220	0.812327	4.482262e-51	-8.615850e-47
Msa0165840	Msa1106220	0.842966	1.872660e-58	-8.615850e-47
Msa0165840	Msa1124470	0.815413	9.364013e-52	-8.615850e-47
Msa0165840	Msa1127280	0.841382	4.915639e-58	-8.615850e-47
Msa0165840	Msa1144990	0.801554	8.524269e-49	-8.615850e-47
Msa0165840	Msa1148630	0.806762	7.028782e-50	-8.615850e-47
Msa0165840	Msa1149450	0.809390	1.937960e-50	-8.615850e-47
Msa0165840	Msa1162880	0.845648	3.561591e-59	-8.615850e-47
Msa0165840	Msa1163180	0.806235	9.078283e-50	-8.615850e-47
Msa0165840	Msa1165480	0.840621	7.789255e-58	-8.615850e-47
Msa0165840	Msa1169170	0.804688	1.915864e-49	-8.615850e-47
Msa0165840	Msa1215980	0.844273	8.374568e-59	-8.615850e-47
Msa0165840	Msa1215990	0.806125	9.573340e-50	-8.615850e-47
Msa0165840	Msa1219770	0.811491	6.819387e-51	-8.615850e-47
Msa0165840	Msa1223390	0.827931	1.190778e-54	-8.615850e-47
Msa0165840	Msa1254420	0.840848	6.789710e-58	-8.615850e-47
Msa0165840	Msa1254540	0.859396	4.256883e-63	-8.615850e-47
Msa0165840	Msa1263740	0.844381	7.830401e-59	-8.615850e-47
Msa0165840	Msa1263780	0.843236	1.586332e-58	-8.615850e-47
Msa0165840	Msa1266690	0.804141	2.491261e-49	-8.615850e-47
Msa0165840	Msa1267930	0.840936	6.437065e-58	-8.615850e-47
Msa0165840	Msa1294460	0.874717	5.430258e-68	-8.615850e-47
Msa0165840	Msa1294790	0.861532	9.601522e-64	-8.615850e-47
Msa0165840	Msa1296330	0.811928	5.478477e-51	-8.615850e-47
Msa0165840	Msa1301820	0.829392	5.283101e-55	-8.615850e-47
Msa0165840	Msa1305920	0.818483	1.914308e-52	-8.615850e-47
Msa0165840	Msa1332950	0.819809	9.556931e-53	-8.615850e-47
Msa0165840	Msa1333360	0.805445	1.330472e-49	-8.615850e-47
Msa0165840	Msa1339170	0.800245	1.577579e-48	-8.615850e-47
Msa0165840	Msa1342810	0.831842	1.327267e-55	-8.615850e-47
Msa0165840	Msa1361930	0.845864	3.112798e-59	-8.615850e-47
Msa0165840	Msa1381470	0.836024	1.192151e-56	-8.615850e-47
Msa0165840	Msa1381800	0.861367	1.078005e-63	-8.615850e-47
Msa0165840	Msa1387500	0.825310	5.026290e-54	-8.615850e-47
Msa0165840	Msa1389820	0.803762	2.986077e-49	-8.615850e-47
Msa0165840	Msa1393560	0.822206	2.681811e-53	-8.615850e-47
Msa0165840	Msa1399190	0.801258	9.800608e-49	-8.615850e-47
Msa0165840	Msa1406720	0.847517	1.099699e-59	-8.615850e-47
Msa0165840	Msa1424590	0.802110	6.553943e-49	-8.615850e-47
Msa0165840	Msa1426320	0.824033	1.005150e-53	-8.615850e-47
Msa0165840	Msa1432520	0.804818	1.799892e-49	-8.615850e-47
Msa0165840	Msa1434640	0.808182	3.511499e-50	-8.615850e-47
Msa0165840	Msa1442260	0.809143	2.189352e-50	-8.615850e-47
Msa0165840	Msa1457840	0.835707	1.434481e-56	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0165840	MtrunA17_Chr7g0272861	56.977	430	97	12	1	351	1	421	1.46e-143	413
Msa0165840	MtrunA17_Chr1g0191861	98.551	69	1	0	28	96	9	77	2.06e-42	142
Msa0165840	MtrunA17_Chr1g0191871	96.970	66	2	0	101	166	1	66	7.05e-38	130

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0165840	AT3G05330.1	50.133	377	126	10	1	321	1	371	8.33e-102	307

Find 89 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTATCAAATTCTTTAACTTT+TGG	0.200274	1_4:-46641391	None:intergenic
CCAGGTTAGTTTCACCATTA+AGG	0.232654	1_4:+46641770	Msa0165840:CDS
CCTCGATTTCTTGAAATAAT+AGG	0.244583	1_4:-46641568	None:intergenic
ACCAAAAGCAAAACAGGTTT+GGG	0.298728	1_4:+46640127	Msa0165840:five_prime_UTR
AGAAACCTTAAAAGTGATTC+TGG	0.299979	1_4:-46641365	None:intergenic
GGGAATTGAACTGTTGATAC+TGG	0.334992	1_4:-46641847	None:intergenic
GTTTCTCCTACAAGCATTGC+AGG	0.339255	1_4:-46641127	None:intergenic
CCTTACATTCTTCTACTAGA+AGG	0.358404	1_4:-46641868	None:intergenic
AACCAAAAGCAAAACAGGTT+TGG	0.361926	1_4:+46640126	Msa0165840:five_prime_UTR
AGTATTTGTCTTCGGCGAAT+AGG	0.362928	1_4:+46641425	Msa0165840:CDS
GTATTTGTCTTCGGCGAATA+GGG	0.372487	1_4:+46641426	Msa0165840:CDS
CATTGAGTTGACTTGAACAA+AGG	0.398174	1_4:-46641499	None:intergenic
GGTGGAAACAAGGTTGTGTC+AGG	0.399457	1_4:+46640441	Msa0165840:CDS
GCTAAAGTTCTCTTAAGCTT+TGG	0.399461	1_4:-46640227	None:intergenic
TTAGCCCATGGCCTATTCCT+TGG	0.403064	1_4:-46641454	None:intergenic
TCTGAAACCAAAAGCAAAAC+AGG	0.416963	1_4:+46640121	Msa0165840:five_prime_UTR
TTGCTTGGCCTTTGAGACAT+TGG	0.421229	1_4:-46641241	None:intergenic
GAACTTCAGAACACTGCAAC+TGG	0.423038	1_4:+46640420	Msa0165840:CDS
GTTGACTTGAACAAAGGGTT+GGG	0.423813	1_4:-46641493	None:intergenic
AGTGTTTCTCTAATGAGAAC+AGG	0.433239	1_4:-46640260	None:intergenic
CTTATATTTATACAGGTGAA+TGG	0.441165	1_4:+46641089	Msa0165840:intron
ACACACAACTTAAGTCTAGA+AGG	0.442768	1_4:+46641281	Msa0165840:CDS
AGAGAAATTGTTTCAGCAGT+TGG	0.447693	1_4:+46641184	Msa0165840:CDS
TCGTTGCCTGCAATGCTTGT+AGG	0.448297	1_4:+46641121	Msa0165840:CDS
ATAGGGTATCTCCAAGGAAT+AGG	0.448663	1_4:+46641443	Msa0165840:CDS
AAGTTCTCTTAAGCTTTGGT+GGG	0.451535	1_4:-46640223	None:intergenic
TCAGACCCTCCTTCTGAAGA+TGG	0.453599	1_4:+46640190	Msa0165840:exon
ATCTTGACTTTGGAGTTTGA+AGG	0.460114	1_4:-46641628	None:intergenic
AAAGTTCTCTTAAGCTTTGG+TGG	0.470882	1_4:-46640224	None:intergenic
AAGCAACAAGTATTTGTCTT+CGG	0.479578	1_4:+46641417	Msa0165840:CDS
CTCCATCGAGACTAGCTACC+AGG	0.480651	1_4:+46641752	Msa0165840:CDS
AAGAGAAACTGACCTGTGTT+TGG	0.481868	1_4:-46640669	None:intergenic
CCTTCTAGTAGAAGAATGTA+AGG	0.492120	1_4:+46641868	Msa0165840:CDS
ATTGAGTTGACTTGAACAAA+GGG	0.497713	1_4:-46641498	None:intergenic
GTTATCTCAAAACTAGTCTC+AGG	0.503294	1_4:+46640493	Msa0165840:CDS
AGTTGACTTGAACAAAGGGT+TGG	0.503335	1_4:-46641494	None:intergenic
CTTACATTCTTCTACTAGAA+GGG	0.503894	1_4:-46641867	None:intergenic
AAAAGTGATGGAATTGTAAG+TGG	0.506447	1_4:+46641811	Msa0165840:CDS
CACTGCAACTGGTGGAAACA+AGG	0.518087	1_4:+46640431	Msa0165840:CDS
TGACCTGTGTTTGGCGTAGA+GGG	0.523038	1_4:-46640660	None:intergenic
CCTTAATGGTGAAACTAACC+TGG	0.524129	1_4:-46641770	None:intergenic
ACTTAAGTCTAGAAGGAAGA+AGG	0.529704	1_4:+46641288	Msa0165840:CDS
ATGCTTGTAGGAGAAACTCT+TGG	0.537823	1_4:+46641133	Msa0165840:CDS
GCTCAAACTTGCAAGTCGTG+TGG	0.539109	1_4:-46641680	None:intergenic
AGTTCTCTTAAGCTTTGGTG+GGG	0.545383	1_4:-46640222	None:intergenic
ATTCTCTGAAGGGTCAAGAA+TGG	0.547174	1_4:+46640606	Msa0165840:intron
CGCAACCATCTTCAGAAGGA+GGG	0.549046	1_4:-46640195	None:intergenic
CTGACCTGTGTTTGGCGTAG+AGG	0.555004	1_4:-46640661	None:intergenic
TATCTCCAAGGAATAGGCCA+TGG	0.556210	1_4:+46641449	Msa0165840:CDS
TTGACTTTGGAGTTTGAAGG+TGG	0.556654	1_4:-46641625	None:intergenic
CTCAAACTTGCAAGTCGTGT+GGG	0.558102	1_4:-46641679	None:intergenic
ATACAGAACAAAGAATGCTA+TGG	0.559439	1_4:-46641989	None:intergenic
TCTCTCTCTCTAACAGAGAC+GGG	0.559920	1_4:-46640159	None:intergenic
CAAACCGTTACTCATACACT+TGG	0.562775	1_4:+46640053	Msa0165840:five_prime_UTR
AAAACTGCACAGAAAAGTGA+TGG	0.564152	1_4:+46641799	Msa0165840:CDS
ATAGTGACAAAATACAATCA+AGG	0.568852	1_4:-46641900	None:intergenic
ATCTCCAAGGAATAGGCCAT+GGG	0.568882	1_4:+46641450	Msa0165840:CDS
CAAAGAATGCTATGGACACA+AGG	0.572605	1_4:-46641981	None:intergenic
GGAACGAGCTCTTTGAAGTG+AGG	0.574082	1_4:-46641344	None:intergenic
CTTAGCCCACGAAGTACCAT+AGG	0.574788	1_4:+46640471	Msa0165840:CDS
CTTCAGAACACTGCAACTGG+TGG	0.586535	1_4:+46640423	Msa0165840:CDS
GAACGAGCTCTTTGAAGTGA+GGG	0.590066	1_4:-46641343	None:intergenic
GGAATTGAACTGTTGATACT+GGG	0.592270	1_4:-46641846	None:intergenic
AGATAACCTATGGTACTTCG+TGG	0.597724	1_4:-46640477	None:intergenic
TCGCAACCATCTTCAGAAGG+AGG	0.603339	1_4:-46640196	None:intergenic
TTCTCGCAACCATCTTCAGA+AGG	0.603673	1_4:-46640199	None:intergenic
GTGGAAACAAGGTTGTGTCA+GGG	0.603682	1_4:+46640442	Msa0165840:CDS
CTCTAACAGAGACGGGAACA+CGG	0.604510	1_4:-46640152	None:intergenic
TTTGAAGGTGGATCAATGCA+TGG	0.607711	1_4:+46640386	Msa0165840:intron
TTGACTTGAACAAAGGGTTG+GGG	0.609764	1_4:-46641492	None:intergenic
TGGAAACAAGGTTGTGTCAG+GGG	0.610201	1_4:+46640443	Msa0165840:CDS
AACCTGGTAGCTAGTCTCGA+TGG	0.615814	1_4:-46641754	None:intergenic
CCTATTATTTCAAGAAATCG+AGG	0.617068	1_4:+46641568	Msa0165840:CDS
GATAACCTATGGTACTTCGT+GGG	0.618590	1_4:-46640476	None:intergenic
CATTAGAGAAACACTCAACA+AGG	0.623747	1_4:+46640268	Msa0165840:CDS
CACACCAAGTGTATGAGTAA+CGG	0.626837	1_4:-46640057	None:intergenic
AGGTGGATCAATGCATGGCT+CGG	0.628242	1_4:+46640391	Msa0165840:intron
CAAACTAAACTACACAATGA+CGG	0.631209	1_4:+46641316	Msa0165840:CDS
GGGTCAAGAATGGTGCCACA+AGG	0.631810	1_4:+46640616	Msa0165840:intron
TGCCACAAGGAAATCTCCTG+TGG	0.632439	1_4:+46640629	Msa0165840:CDS
GTAGAGGGAAACTTTCCCAC+AGG	0.636539	1_4:-46640645	None:intergenic
GCCACAAGGAAATCTCCTGT+GGG	0.643915	1_4:+46640630	Msa0165840:CDS
ATATTTATACAGGTGAATGG+AGG	0.648586	1_4:+46641092	Msa0165840:intron
GGTGCAAGCAAGAATCACTC+AGG	0.650537	1_4:+46640514	Msa0165840:CDS
TTTCCCTCTACGCCAAACAC+AGG	0.653931	1_4:+46640657	Msa0165840:CDS
CGGCGAATAGGGTATCTCCA+AGG	0.666411	1_4:+46641437	Msa0165840:CDS
TCGATGGAGAGAAAGATCGA+CGG	0.679326	1_4:-46641738	None:intergenic
TCCCACAGGAGATTTCCTTG+TGG	0.705582	1_4:-46640631	None:intergenic
CCAAAAGCAAAACAGGTTTG+GGG	0.721954	1_4:+46640128	Msa0165840:five_prime_UTR

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ACAAAAATTAAACTAAAATA+TGG	-	chr1_4:46640575-46640594	None:intergenic	10.0%
!!	ACAAAAATTAAACTAAAATA+TGG	-	chr1_4:46640575-46640594	None:intergenic	10.0%
!!!	AAACATTTTACATTAATCTA+AGG	-	chr1_4:46640355-46640374	None:intergenic	15.0%
!!!	TAATGTAAAATGTTTCTTTT+TGG	+	chr1_4:46640360-46640379	Msa0165840:intron	15.0%
!!!	AATGTAAAATGTTTCTTTTT+GGG	+	chr1_4:46640361-46640380	Msa0165840:intron	15.0%
!!!	AAACATTTTACATTAATCTA+AGG	-	chr1_4:46640355-46640374	None:intergenic	15.0%
!!!	TAATGTAAAATGTTTCTTTT+TGG	+	chr1_4:46640360-46640379	Msa0165840:intron	15.0%
!!!	AATGTAAAATGTTTCTTTTT+GGG	+	chr1_4:46640361-46640380	Msa0165840:intron	15.0%
!!!	GTTTGGAATTAAATTTACTT+CGG	-	chr1_4:46640702-46640721	None:intergenic	20.0%
!!!	AATTTAGAATCATAGATCTT+AGG	+	chr1_4:46640994-46641013	Msa0165840:intron	20.0%
!!	ATTCACCTGTATAAATATAA+GGG	-	chr1_4:46641090-46641109	None:intergenic	20.0%
!!!	CTATCAAATTCTTTAACTTT+TGG	-	chr1_4:46641394-46641413	None:intergenic	20.0%
!!	CTGTTCAACAAAAAATATAA+AGG	+	chr1_4:46642013-46642032	Msa0165840:three_prime_UTR	20.0%
!!!	GTTTGGAATTAAATTTACTT+CGG	-	chr1_4:46640702-46640721	None:intergenic	20.0%
!!!	AATTTAGAATCATAGATCTT+AGG	+	chr1_4:46640994-46641013	Msa0165840:intron	20.0%
!!	ATTCACCTGTATAAATATAA+GGG	-	chr1_4:46641090-46641109	None:intergenic	20.0%
!!!	CTATCAAATTCTTTAACTTT+TGG	-	chr1_4:46641394-46641413	None:intergenic	20.0%
!!	CTGTTCAACAAAAAATATAA+AGG	+	chr1_4:46642013-46642032	Msa0165840:three_prime_UTR	20.0%
!	TGAAATAATTAAGTCGAATG+CGG	-	chr1_4:46640797-46640816	None:intergenic	25.0%
!!	ATTTCATTTTCTCAGATTAC+TGG	+	chr1_4:46640811-46640830	Msa0165840:intron	25.0%
!!!	CTGGTTTTAAATTGTGATTT+CGG	+	chr1_4:46640874-46640893	Msa0165840:intron	25.0%
!	TAAGTCAGACACAATTTATA+AGG	-	chr1_4:46640954-46640973	None:intergenic	25.0%
!	CATTCACCTGTATAAATATA+AGG	-	chr1_4:46641091-46641110	None:intergenic	25.0%
!	CTTATATTTATACAGGTGAA+TGG	+	chr1_4:46641089-46641108	Msa0165840:intron	25.0%
!!!	TCAAATTCTTTAACTTTTGG+AGG	-	chr1_4:46641391-46641410	None:intergenic	25.0%
!	GATTTAATCAAAAACTTGTG+TGG	-	chr1_4:46641604-46641623	None:intergenic	25.0%
!	ATAGTGACAAAATACAATCA+AGG	-	chr1_4:46641903-46641922	None:intergenic	25.0%
!!	TTGATTGTATTTTGTCACTA+TGG	+	chr1_4:46641902-46641921	Msa0165840:three_prime_UTR	25.0%
!	TGAAATAATTAAGTCGAATG+CGG	-	chr1_4:46640797-46640816	None:intergenic	25.0%
!!	ATTTCATTTTCTCAGATTAC+TGG	+	chr1_4:46640811-46640830	Msa0165840:intron	25.0%
!!!	CTGGTTTTAAATTGTGATTT+CGG	+	chr1_4:46640874-46640893	Msa0165840:intron	25.0%
!	TAAGTCAGACACAATTTATA+AGG	-	chr1_4:46640954-46640973	None:intergenic	25.0%
!	CATTCACCTGTATAAATATA+AGG	-	chr1_4:46641091-46641110	None:intergenic	25.0%
!	CTTATATTTATACAGGTGAA+TGG	+	chr1_4:46641089-46641108	Msa0165840:intron	25.0%
!!!	TCAAATTCTTTAACTTTTGG+AGG	-	chr1_4:46641391-46641410	None:intergenic	25.0%
!	GATTTAATCAAAAACTTGTG+TGG	-	chr1_4:46641604-46641623	None:intergenic	25.0%
!	ATAGTGACAAAATACAATCA+AGG	-	chr1_4:46641903-46641922	None:intergenic	25.0%
!!	TTGATTGTATTTTGTCACTA+TGG	+	chr1_4:46641902-46641921	Msa0165840:three_prime_UTR	25.0%
!!!	ACTAGTTTTGAGATAACCTA+TGG	-	chr1_4:46640490-46640509	None:intergenic	30.0%
!!!	GGTACTTTTTCTTTTCTTCA+TGG	+	chr1_4:46640535-46640554	Msa0165840:intron	30.0%
	ATAATGTTCAAGCGAAAGTT+TGG	-	chr1_4:46640719-46640738	None:intergenic	30.0%
	CGCTTGAACATTATTTAACA+TGG	+	chr1_4:46640725-46640744	Msa0165840:intron	30.0%
!	TGCGAGTGTTATTACTTATT+AGG	+	chr1_4:46641020-46641039	Msa0165840:intron	30.0%
	GTATAAATATAAGGGTTCAC+AGG	-	chr1_4:46641082-46641101	None:intergenic	30.0%
	GTGAACCCTTATATTTATAC+AGG	+	chr1_4:46641082-46641101	Msa0165840:intron	30.0%
	ATATTTATACAGGTGAATGG+AGG	+	chr1_4:46641092-46641111	Msa0165840:intron	30.0%
!	AACTCTTGGAGAAATTTTAC+AGG	+	chr1_4:46641147-46641166	Msa0165840:CDS	30.0%
!!	TTTGAGACATTGGTGTTTTT+GGG	-	chr1_4:46641234-46641253	None:intergenic	30.0%
	CAAACTAAACTACACAATGA+CGG	+	chr1_4:46641316-46641335	Msa0165840:CDS	30.0%
	AGAAACCTTAAAAGTGATTC+TGG	-	chr1_4:46641368-46641387	None:intergenic	30.0%
	AAGCAACAAGTATTTGTCTT+CGG	+	chr1_4:46641417-46641436	Msa0165840:CDS	30.0%
!!	ATTGAGTTGACTTGAACAAA+GGG	-	chr1_4:46641501-46641520	None:intergenic	30.0%
	CCTCGATTTCTTGAAATAAT+AGG	-	chr1_4:46641571-46641590	None:intergenic	30.0%
	CCTATTATTTCAAGAAATCG+AGG	+	chr1_4:46641568-46641587	Msa0165840:CDS	30.0%
!	AAAAGTGATGGAATTGTAAG+TGG	+	chr1_4:46641811-46641830	Msa0165840:CDS	30.0%
	CTTACATTCTTCTACTAGAA+GGG	-	chr1_4:46641870-46641889	None:intergenic	30.0%
!!!	CTTGAGAGATTTTGTTGTTA+AGG	+	chr1_4:46641952-46641971	Msa0165840:three_prime_UTR	30.0%
	ATACAGAACAAAGAATGCTA+TGG	-	chr1_4:46641992-46642011	None:intergenic	30.0%
!!!	ACTAGTTTTGAGATAACCTA+TGG	-	chr1_4:46640490-46640509	None:intergenic	30.0%
!!!	GGTACTTTTTCTTTTCTTCA+TGG	+	chr1_4:46640535-46640554	Msa0165840:intron	30.0%
	ATAATGTTCAAGCGAAAGTT+TGG	-	chr1_4:46640719-46640738	None:intergenic	30.0%
	CGCTTGAACATTATTTAACA+TGG	+	chr1_4:46640725-46640744	Msa0165840:intron	30.0%
!	TGCGAGTGTTATTACTTATT+AGG	+	chr1_4:46641020-46641039	Msa0165840:intron	30.0%
	GTATAAATATAAGGGTTCAC+AGG	-	chr1_4:46641082-46641101	None:intergenic	30.0%
	GTGAACCCTTATATTTATAC+AGG	+	chr1_4:46641082-46641101	Msa0165840:intron	30.0%
	ATATTTATACAGGTGAATGG+AGG	+	chr1_4:46641092-46641111	Msa0165840:intron	30.0%
!	AACTCTTGGAGAAATTTTAC+AGG	+	chr1_4:46641147-46641166	Msa0165840:CDS	30.0%
!!	TTTGAGACATTGGTGTTTTT+GGG	-	chr1_4:46641234-46641253	None:intergenic	30.0%
	CAAACTAAACTACACAATGA+CGG	+	chr1_4:46641316-46641335	Msa0165840:CDS	30.0%
	AGAAACCTTAAAAGTGATTC+TGG	-	chr1_4:46641368-46641387	None:intergenic	30.0%
	AAGCAACAAGTATTTGTCTT+CGG	+	chr1_4:46641417-46641436	Msa0165840:CDS	30.0%
!!	ATTGAGTTGACTTGAACAAA+GGG	-	chr1_4:46641501-46641520	None:intergenic	30.0%
	CCTCGATTTCTTGAAATAAT+AGG	-	chr1_4:46641571-46641590	None:intergenic	30.0%
	CCTATTATTTCAAGAAATCG+AGG	+	chr1_4:46641568-46641587	Msa0165840:CDS	30.0%
!	AAAAGTGATGGAATTGTAAG+TGG	+	chr1_4:46641811-46641830	Msa0165840:CDS	30.0%
	CTTACATTCTTCTACTAGAA+GGG	-	chr1_4:46641870-46641889	None:intergenic	30.0%
!!!	CTTGAGAGATTTTGTTGTTA+AGG	+	chr1_4:46641952-46641971	Msa0165840:three_prime_UTR	30.0%
	ATACAGAACAAAGAATGCTA+TGG	-	chr1_4:46641992-46642011	None:intergenic	30.0%
!!	GAGTAACGGTTTGTTTTCAA+CGG	-	chr1_4:46640046-46640065	None:intergenic	35.0%
!!!	TTGCTTTTGGTTTCAGAGTT+TGG	-	chr1_4:46640118-46640137	None:intergenic	35.0%
!	TCTGAAACCAAAAGCAAAAC+AGG	+	chr1_4:46640121-46640140	Msa0165840:five_prime_UTR	35.0%
	AACCAAAAGCAAAACAGGTT+TGG	+	chr1_4:46640126-46640145	Msa0165840:five_prime_UTR	35.0%
	ACCAAAAGCAAAACAGGTTT+GGG	+	chr1_4:46640127-46640146	Msa0165840:five_prime_UTR	35.0%
!	AAGTTCTCTTAAGCTTTGGT+GGG	-	chr1_4:46640226-46640245	None:intergenic	35.0%
!	AAAGTTCTCTTAAGCTTTGG+TGG	-	chr1_4:46640227-46640246	None:intergenic	35.0%
	GCTAAAGTTCTCTTAAGCTT+TGG	-	chr1_4:46640230-46640249	None:intergenic	35.0%
	AGTGTTTCTCTAATGAGAAC+AGG	-	chr1_4:46640263-46640282	None:intergenic	35.0%
	CATTAGAGAAACACTCAACA+AGG	+	chr1_4:46640268-46640287	Msa0165840:CDS	35.0%
!!!	GTTTCTTTTTGGGTCTTTGA+AGG	+	chr1_4:46640371-46640390	Msa0165840:intron	35.0%
!	GTTATCTCAAAACTAGTCTC+AGG	+	chr1_4:46640493-46640512	Msa0165840:CDS	35.0%
!	TTTTGTTCCCATTCTCTGAA+GGG	+	chr1_4:46640596-46640615	Msa0165840:intron	35.0%
	CTTCTAATCGAAGATGTGTA+AGG	+	chr1_4:46640751-46640770	Msa0165840:intron	35.0%
!	AGTGCTTCATAGTCTTAATC+TGG	+	chr1_4:46640855-46640874	Msa0165840:intron	35.0%
	AGAGAAATTGTTTCAGCAGT+TGG	+	chr1_4:46641184-46641203	Msa0165840:CDS	35.0%
!!!	CTTTGAGACATTGGTGTTTT+TGG	-	chr1_4:46641235-46641254	None:intergenic	35.0%
	CAAAAACACCAATGTCTCAA+AGG	+	chr1_4:46641233-46641252	Msa0165840:CDS	35.0%
!!	TCGAGGTTTATTTTCTTGCT+TGG	-	chr1_4:46641259-46641278	None:intergenic	35.0%
!!	ACTTAAGTTGTGTGTTTTCG+AGG	-	chr1_4:46641276-46641295	None:intergenic	35.0%
	ACACACAACTTAAGTCTAGA+AGG	+	chr1_4:46641281-46641300	Msa0165840:CDS	35.0%
	ACTTAAGTCTAGAAGGAAGA+AGG	+	chr1_4:46641288-46641307	Msa0165840:CDS	35.0%
!!	TCGTTCCAGAATCACTTTTA+AGG	+	chr1_4:46641360-46641379	Msa0165840:CDS	35.0%
!!!	AGTACAGTTTTTTTAGCCCA+TGG	-	chr1_4:46641469-46641488	None:intergenic	35.0%
!!	CATTGAGTTGACTTGAACAA+AGG	-	chr1_4:46641502-46641521	None:intergenic	35.0%
!	AACAGCAGTTTTGCAAAACA+AGG	+	chr1_4:46641542-46641561	Msa0165840:CDS	35.0%
!!	AAAAACTTGTGTGGTGTTGT+TGG	-	chr1_4:46641595-46641614	None:intergenic	35.0%
!!	ATCTTGACTTTGGAGTTTGA+AGG	-	chr1_4:46641631-46641650	None:intergenic	35.0%
!	AGTGCTTTTGATCTTGACTT+TGG	-	chr1_4:46641641-46641660	None:intergenic	35.0%
	AAAACTGCACAGAAAAGTGA+TGG	+	chr1_4:46641799-46641818	Msa0165840:CDS	35.0%
	GGAATTGAACTGTTGATACT+GGG	-	chr1_4:46641849-46641868	None:intergenic	35.0%
	CCTTACATTCTTCTACTAGA+AGG	-	chr1_4:46641871-46641890	None:intergenic	35.0%
	CCTTCTAGTAGAAGAATGTA+AGG	+	chr1_4:46641868-46641887	Msa0165840:CDS	35.0%
!!	GAGTAACGGTTTGTTTTCAA+CGG	-	chr1_4:46640046-46640065	None:intergenic	35.0%
!!!	TTGCTTTTGGTTTCAGAGTT+TGG	-	chr1_4:46640118-46640137	None:intergenic	35.0%
!	TCTGAAACCAAAAGCAAAAC+AGG	+	chr1_4:46640121-46640140	Msa0165840:five_prime_UTR	35.0%
	AACCAAAAGCAAAACAGGTT+TGG	+	chr1_4:46640126-46640145	Msa0165840:five_prime_UTR	35.0%
	ACCAAAAGCAAAACAGGTTT+GGG	+	chr1_4:46640127-46640146	Msa0165840:five_prime_UTR	35.0%
!	AAGTTCTCTTAAGCTTTGGT+GGG	-	chr1_4:46640226-46640245	None:intergenic	35.0%
!	AAAGTTCTCTTAAGCTTTGG+TGG	-	chr1_4:46640227-46640246	None:intergenic	35.0%
	GCTAAAGTTCTCTTAAGCTT+TGG	-	chr1_4:46640230-46640249	None:intergenic	35.0%
	AGTGTTTCTCTAATGAGAAC+AGG	-	chr1_4:46640263-46640282	None:intergenic	35.0%
	CATTAGAGAAACACTCAACA+AGG	+	chr1_4:46640268-46640287	Msa0165840:CDS	35.0%
!!!	GTTTCTTTTTGGGTCTTTGA+AGG	+	chr1_4:46640371-46640390	Msa0165840:intron	35.0%
!	GTTATCTCAAAACTAGTCTC+AGG	+	chr1_4:46640493-46640512	Msa0165840:CDS	35.0%
!	TTTTGTTCCCATTCTCTGAA+GGG	+	chr1_4:46640596-46640615	Msa0165840:intron	35.0%
	CTTCTAATCGAAGATGTGTA+AGG	+	chr1_4:46640751-46640770	Msa0165840:intron	35.0%
!	AGTGCTTCATAGTCTTAATC+TGG	+	chr1_4:46640855-46640874	Msa0165840:intron	35.0%
	AGAGAAATTGTTTCAGCAGT+TGG	+	chr1_4:46641184-46641203	Msa0165840:CDS	35.0%
!!!	CTTTGAGACATTGGTGTTTT+TGG	-	chr1_4:46641235-46641254	None:intergenic	35.0%
	CAAAAACACCAATGTCTCAA+AGG	+	chr1_4:46641233-46641252	Msa0165840:CDS	35.0%
!!	TCGAGGTTTATTTTCTTGCT+TGG	-	chr1_4:46641259-46641278	None:intergenic	35.0%
!!	ACTTAAGTTGTGTGTTTTCG+AGG	-	chr1_4:46641276-46641295	None:intergenic	35.0%
	ACACACAACTTAAGTCTAGA+AGG	+	chr1_4:46641281-46641300	Msa0165840:CDS	35.0%
	ACTTAAGTCTAGAAGGAAGA+AGG	+	chr1_4:46641288-46641307	Msa0165840:CDS	35.0%
!!	TCGTTCCAGAATCACTTTTA+AGG	+	chr1_4:46641360-46641379	Msa0165840:CDS	35.0%
!!!	AGTACAGTTTTTTTAGCCCA+TGG	-	chr1_4:46641469-46641488	None:intergenic	35.0%
!!	CATTGAGTTGACTTGAACAA+AGG	-	chr1_4:46641502-46641521	None:intergenic	35.0%
!	AACAGCAGTTTTGCAAAACA+AGG	+	chr1_4:46641542-46641561	Msa0165840:CDS	35.0%
!!	AAAAACTTGTGTGGTGTTGT+TGG	-	chr1_4:46641595-46641614	None:intergenic	35.0%
!!	ATCTTGACTTTGGAGTTTGA+AGG	-	chr1_4:46641631-46641650	None:intergenic	35.0%
!	AGTGCTTTTGATCTTGACTT+TGG	-	chr1_4:46641641-46641660	None:intergenic	35.0%
	AAAACTGCACAGAAAAGTGA+TGG	+	chr1_4:46641799-46641818	Msa0165840:CDS	35.0%
	GGAATTGAACTGTTGATACT+GGG	-	chr1_4:46641849-46641868	None:intergenic	35.0%
	CCTTACATTCTTCTACTAGA+AGG	-	chr1_4:46641871-46641890	None:intergenic	35.0%
	CCTTCTAGTAGAAGAATGTA+AGG	+	chr1_4:46641868-46641887	Msa0165840:CDS	35.0%
!!	AACGGTTTGTTTTCAACGGT+CGG	-	chr1_4:46640042-46640061	None:intergenic	40.0%
	CAAACCGTTACTCATACACT+TGG	+	chr1_4:46640053-46640072	Msa0165840:five_prime_UTR	40.0%
	CACACCAAGTGTATGAGTAA+CGG	-	chr1_4:46640060-46640079	None:intergenic	40.0%
	CCAAAAGCAAAACAGGTTTG+GGG	+	chr1_4:46640128-46640147	Msa0165840:five_prime_UTR	40.0%
!	AGTTCTCTTAAGCTTTGGTG+GGG	-	chr1_4:46640225-46640244	None:intergenic	40.0%
!!!	TCTTTTTGGGTCTTTGAAGG+TGG	+	chr1_4:46640374-46640393	Msa0165840:intron	40.0%
	TTTGAAGGTGGATCAATGCA+TGG	+	chr1_4:46640386-46640405	Msa0165840:intron	40.0%
	GATAACCTATGGTACTTCGT+GGG	-	chr1_4:46640479-46640498	None:intergenic	40.0%
	AGATAACCTATGGTACTTCG+TGG	-	chr1_4:46640480-46640499	None:intergenic	40.0%
!!	GTTTTGTTCCCATTCTCTGA+AGG	+	chr1_4:46640595-46640614	Msa0165840:intron	40.0%
	TTCTTGACCCTTCAGAGAAT+GGG	-	chr1_4:46640606-46640625	None:intergenic	40.0%
	ATTCTTGACCCTTCAGAGAA+TGG	-	chr1_4:46640607-46640626	None:intergenic	40.0%
!	ATTCTCTGAAGGGTCAAGAA+TGG	+	chr1_4:46640606-46640625	Msa0165840:intron	40.0%
	AAGAGAAACTGACCTGTGTT+TGG	-	chr1_4:46640672-46640691	None:intergenic	40.0%
	ATAAGGGTTCACAGGTGAAT+AGG	-	chr1_4:46641074-46641093	None:intergenic	40.0%
	ATGCTTGTAGGAGAAACTCT+TGG	+	chr1_4:46641133-46641152	Msa0165840:CDS	40.0%
!!!	GTTTTTGGGTCATCTTTGGA+GGG	-	chr1_4:46641220-46641239	None:intergenic	40.0%
!!!	TGTTTTTGGGTCATCTTTGG+AGG	-	chr1_4:46641221-46641240	None:intergenic	40.0%
!!!	TGGTGTTTTTGGGTCATCTT+TGG	-	chr1_4:46641224-46641243	None:intergenic	40.0%
	AGTATTTGTCTTCGGCGAAT+AGG	+	chr1_4:46641425-46641444	Msa0165840:CDS	40.0%
	GTATTTGTCTTCGGCGAATA+GGG	+	chr1_4:46641426-46641445	Msa0165840:CDS	40.0%
!	ATAGGGTATCTCCAAGGAAT+AGG	+	chr1_4:46641443-46641462	Msa0165840:CDS	40.0%
!	TTGACTTGAACAAAGGGTTG+GGG	-	chr1_4:46641495-46641514	None:intergenic	40.0%
!!	GTTGACTTGAACAAAGGGTT+GGG	-	chr1_4:46641496-46641515	None:intergenic	40.0%
!!	AGTTGACTTGAACAAAGGGT+TGG	-	chr1_4:46641497-46641516	None:intergenic	40.0%
!!	TTGACTTTGGAGTTTGAAGG+TGG	-	chr1_4:46641628-46641647	None:intergenic	40.0%
	TTCTCCAAAAAGATCGACTG+CGG	+	chr1_4:46641708-46641727	Msa0165840:CDS	40.0%
	CCTTAATGGTGAAACTAACC+TGG	-	chr1_4:46641773-46641792	None:intergenic	40.0%
!!	CCAGGTTAGTTTCACCATTA+AGG	+	chr1_4:46641770-46641789	Msa0165840:CDS	40.0%
!	GCAGTTTTCTTGCTCCTTAA+TGG	-	chr1_4:46641787-46641806	None:intergenic	40.0%
	GGGAATTGAACTGTTGATAC+TGG	-	chr1_4:46641850-46641869	None:intergenic	40.0%
	CAAAGAATGCTATGGACACA+AGG	-	chr1_4:46641984-46642003	None:intergenic	40.0%
!!	AACGGTTTGTTTTCAACGGT+CGG	-	chr1_4:46640042-46640061	None:intergenic	40.0%
	CAAACCGTTACTCATACACT+TGG	+	chr1_4:46640053-46640072	Msa0165840:five_prime_UTR	40.0%
	CACACCAAGTGTATGAGTAA+CGG	-	chr1_4:46640060-46640079	None:intergenic	40.0%
	CCAAAAGCAAAACAGGTTTG+GGG	+	chr1_4:46640128-46640147	Msa0165840:five_prime_UTR	40.0%
!	AGTTCTCTTAAGCTTTGGTG+GGG	-	chr1_4:46640225-46640244	None:intergenic	40.0%
!!!	TCTTTTTGGGTCTTTGAAGG+TGG	+	chr1_4:46640374-46640393	Msa0165840:intron	40.0%
	TTTGAAGGTGGATCAATGCA+TGG	+	chr1_4:46640386-46640405	Msa0165840:intron	40.0%
	GATAACCTATGGTACTTCGT+GGG	-	chr1_4:46640479-46640498	None:intergenic	40.0%
	AGATAACCTATGGTACTTCG+TGG	-	chr1_4:46640480-46640499	None:intergenic	40.0%
!!	GTTTTGTTCCCATTCTCTGA+AGG	+	chr1_4:46640595-46640614	Msa0165840:intron	40.0%
	TTCTTGACCCTTCAGAGAAT+GGG	-	chr1_4:46640606-46640625	None:intergenic	40.0%
	ATTCTTGACCCTTCAGAGAA+TGG	-	chr1_4:46640607-46640626	None:intergenic	40.0%
!	ATTCTCTGAAGGGTCAAGAA+TGG	+	chr1_4:46640606-46640625	Msa0165840:intron	40.0%
	AAGAGAAACTGACCTGTGTT+TGG	-	chr1_4:46640672-46640691	None:intergenic	40.0%
	ATAAGGGTTCACAGGTGAAT+AGG	-	chr1_4:46641074-46641093	None:intergenic	40.0%
	ATGCTTGTAGGAGAAACTCT+TGG	+	chr1_4:46641133-46641152	Msa0165840:CDS	40.0%
!!!	GTTTTTGGGTCATCTTTGGA+GGG	-	chr1_4:46641220-46641239	None:intergenic	40.0%
!!!	TGTTTTTGGGTCATCTTTGG+AGG	-	chr1_4:46641221-46641240	None:intergenic	40.0%
!!!	TGGTGTTTTTGGGTCATCTT+TGG	-	chr1_4:46641224-46641243	None:intergenic	40.0%
	AGTATTTGTCTTCGGCGAAT+AGG	+	chr1_4:46641425-46641444	Msa0165840:CDS	40.0%
	GTATTTGTCTTCGGCGAATA+GGG	+	chr1_4:46641426-46641445	Msa0165840:CDS	40.0%
!	ATAGGGTATCTCCAAGGAAT+AGG	+	chr1_4:46641443-46641462	Msa0165840:CDS	40.0%
!	TTGACTTGAACAAAGGGTTG+GGG	-	chr1_4:46641495-46641514	None:intergenic	40.0%
!!	GTTGACTTGAACAAAGGGTT+GGG	-	chr1_4:46641496-46641515	None:intergenic	40.0%
!!	AGTTGACTTGAACAAAGGGT+TGG	-	chr1_4:46641497-46641516	None:intergenic	40.0%
!!	TTGACTTTGGAGTTTGAAGG+TGG	-	chr1_4:46641628-46641647	None:intergenic	40.0%
	TTCTCCAAAAAGATCGACTG+CGG	+	chr1_4:46641708-46641727	Msa0165840:CDS	40.0%
	CCTTAATGGTGAAACTAACC+TGG	-	chr1_4:46641773-46641792	None:intergenic	40.0%
!!	CCAGGTTAGTTTCACCATTA+AGG	+	chr1_4:46641770-46641789	Msa0165840:CDS	40.0%
!	GCAGTTTTCTTGCTCCTTAA+TGG	-	chr1_4:46641787-46641806	None:intergenic	40.0%
	GGGAATTGAACTGTTGATAC+TGG	-	chr1_4:46641850-46641869	None:intergenic	40.0%
	CAAAGAATGCTATGGACACA+AGG	-	chr1_4:46641984-46642003	None:intergenic	40.0%
!	CCCCAAACCTGTTTTGCTTT+TGG	-	chr1_4:46640131-46640150	None:intergenic	45.0%
	TCTCTCTCTCTAACAGAGAC+GGG	-	chr1_4:46640162-46640181	None:intergenic	45.0%
	CTCTCTCTCTCTAACAGAGA+CGG	-	chr1_4:46640163-46640182	None:intergenic	45.0%
	TTCTCGCAACCATCTTCAGA+AGG	-	chr1_4:46640202-46640221	None:intergenic	45.0%
	GAACTTCAGAACACTGCAAC+TGG	+	chr1_4:46640420-46640439	Msa0165840:CDS	45.0%
	GTGGAAACAAGGTTGTGTCA+GGG	+	chr1_4:46640442-46640461	Msa0165840:CDS	45.0%
	TGGAAACAAGGTTGTGTCAG+GGG	+	chr1_4:46640443-46640462	Msa0165840:CDS	45.0%
!	GTTTCTCCTACAAGCATTGC+AGG	-	chr1_4:46641130-46641149	None:intergenic	45.0%
!!	TTGCTTGGCCTTTGAGACAT+TGG	-	chr1_4:46641244-46641263	None:intergenic	45.0%
!!	GAACGAGCTCTTTGAAGTGA+GGG	-	chr1_4:46641346-46641365	None:intergenic	45.0%
	TATCTCCAAGGAATAGGCCA+TGG	+	chr1_4:46641449-46641468	Msa0165840:CDS	45.0%
	ATCTCCAAGGAATAGGCCAT+GGG	+	chr1_4:46641450-46641469	Msa0165840:CDS	45.0%
	CTCAAACTTGCAAGTCGTGT+GGG	-	chr1_4:46641682-46641701	None:intergenic	45.0%
!	TTAGCCGCAGTCGATCTTTT+TGG	-	chr1_4:46641715-46641734	None:intergenic	45.0%
	TCGATGGAGAGAAAGATCGA+CGG	-	chr1_4:46641741-46641760	None:intergenic	45.0%
!	CCCCAAACCTGTTTTGCTTT+TGG	-	chr1_4:46640131-46640150	None:intergenic	45.0%
	TCTCTCTCTCTAACAGAGAC+GGG	-	chr1_4:46640162-46640181	None:intergenic	45.0%
	CTCTCTCTCTCTAACAGAGA+CGG	-	chr1_4:46640163-46640182	None:intergenic	45.0%
	TTCTCGCAACCATCTTCAGA+AGG	-	chr1_4:46640202-46640221	None:intergenic	45.0%
	GAACTTCAGAACACTGCAAC+TGG	+	chr1_4:46640420-46640439	Msa0165840:CDS	45.0%
	GTGGAAACAAGGTTGTGTCA+GGG	+	chr1_4:46640442-46640461	Msa0165840:CDS	45.0%
	TGGAAACAAGGTTGTGTCAG+GGG	+	chr1_4:46640443-46640462	Msa0165840:CDS	45.0%
!	GTTTCTCCTACAAGCATTGC+AGG	-	chr1_4:46641130-46641149	None:intergenic	45.0%
!!	TTGCTTGGCCTTTGAGACAT+TGG	-	chr1_4:46641244-46641263	None:intergenic	45.0%
!!	GAACGAGCTCTTTGAAGTGA+GGG	-	chr1_4:46641346-46641365	None:intergenic	45.0%
	TATCTCCAAGGAATAGGCCA+TGG	+	chr1_4:46641449-46641468	Msa0165840:CDS	45.0%
	ATCTCCAAGGAATAGGCCAT+GGG	+	chr1_4:46641450-46641469	Msa0165840:CDS	45.0%
	CTCAAACTTGCAAGTCGTGT+GGG	-	chr1_4:46641682-46641701	None:intergenic	45.0%
!	TTAGCCGCAGTCGATCTTTT+TGG	-	chr1_4:46641715-46641734	None:intergenic	45.0%
	TCGATGGAGAGAAAGATCGA+CGG	-	chr1_4:46641741-46641760	None:intergenic	45.0%
	CTCTAACAGAGACGGGAACA+CGG	-	chr1_4:46640155-46640174	None:intergenic	50.0%
!	TCAGACCCTCCTTCTGAAGA+TGG	+	chr1_4:46640190-46640209	Msa0165840:exon	50.0%
	CGCAACCATCTTCAGAAGGA+GGG	-	chr1_4:46640198-46640217	None:intergenic	50.0%
	TCGCAACCATCTTCAGAAGG+AGG	-	chr1_4:46640199-46640218	None:intergenic	50.0%
	AGGTGGATCAATGCATGGCT+CGG	+	chr1_4:46640391-46640410	Msa0165840:intron	50.0%
	CTTCAGAACACTGCAACTGG+TGG	+	chr1_4:46640423-46640442	Msa0165840:CDS	50.0%
	CACTGCAACTGGTGGAAACA+AGG	+	chr1_4:46640431-46640450	Msa0165840:CDS	50.0%
	GGTGGAAACAAGGTTGTGTC+AGG	+	chr1_4:46640441-46640460	Msa0165840:CDS	50.0%
!	CTTAGCCCACGAAGTACCAT+AGG	+	chr1_4:46640471-46640490	Msa0165840:CDS	50.0%
	GGTGCAAGCAAGAATCACTC+AGG	+	chr1_4:46640514-46640533	Msa0165840:CDS	50.0%
	TGCCACAAGGAAATCTCCTG+TGG	+	chr1_4:46640629-46640648	Msa0165840:CDS	50.0%
	GCCACAAGGAAATCTCCTGT+GGG	+	chr1_4:46640630-46640649	Msa0165840:CDS	50.0%
	TCCCACAGGAGATTTCCTTG+TGG	-	chr1_4:46640634-46640653	None:intergenic	50.0%
	GTAGAGGGAAACTTTCCCAC+AGG	-	chr1_4:46640648-46640667	None:intergenic	50.0%
	TTTCCCTCTACGCCAAACAC+AGG	+	chr1_4:46640657-46640676	Msa0165840:CDS	50.0%
	TGACCTGTGTTTGGCGTAGA+GGG	-	chr1_4:46640663-46640682	None:intergenic	50.0%
	TCGTTGCCTGCAATGCTTGT+AGG	+	chr1_4:46641121-46641140	Msa0165840:CDS	50.0%
!!	GGAACGAGCTCTTTGAAGTG+AGG	-	chr1_4:46641347-46641366	None:intergenic	50.0%
	TTAGCCCATGGCCTATTCCT+TGG	-	chr1_4:46641457-46641476	None:intergenic	50.0%
	GCTCAAACTTGCAAGTCGTG+TGG	-	chr1_4:46641683-46641702	None:intergenic	50.0%
!	AACCTGGTAGCTAGTCTCGA+TGG	-	chr1_4:46641757-46641776	None:intergenic	50.0%
	CTCTAACAGAGACGGGAACA+CGG	-	chr1_4:46640155-46640174	None:intergenic	50.0%
!	TCAGACCCTCCTTCTGAAGA+TGG	+	chr1_4:46640190-46640209	Msa0165840:exon	50.0%
	CGCAACCATCTTCAGAAGGA+GGG	-	chr1_4:46640198-46640217	None:intergenic	50.0%
	TCGCAACCATCTTCAGAAGG+AGG	-	chr1_4:46640199-46640218	None:intergenic	50.0%
	AGGTGGATCAATGCATGGCT+CGG	+	chr1_4:46640391-46640410	Msa0165840:intron	50.0%
	CTTCAGAACACTGCAACTGG+TGG	+	chr1_4:46640423-46640442	Msa0165840:CDS	50.0%
	CACTGCAACTGGTGGAAACA+AGG	+	chr1_4:46640431-46640450	Msa0165840:CDS	50.0%
	GGTGGAAACAAGGTTGTGTC+AGG	+	chr1_4:46640441-46640460	Msa0165840:CDS	50.0%
!	CTTAGCCCACGAAGTACCAT+AGG	+	chr1_4:46640471-46640490	Msa0165840:CDS	50.0%
	GGTGCAAGCAAGAATCACTC+AGG	+	chr1_4:46640514-46640533	Msa0165840:CDS	50.0%
	TGCCACAAGGAAATCTCCTG+TGG	+	chr1_4:46640629-46640648	Msa0165840:CDS	50.0%
	GCCACAAGGAAATCTCCTGT+GGG	+	chr1_4:46640630-46640649	Msa0165840:CDS	50.0%
	TCCCACAGGAGATTTCCTTG+TGG	-	chr1_4:46640634-46640653	None:intergenic	50.0%
	GTAGAGGGAAACTTTCCCAC+AGG	-	chr1_4:46640648-46640667	None:intergenic	50.0%
	TTTCCCTCTACGCCAAACAC+AGG	+	chr1_4:46640657-46640676	Msa0165840:CDS	50.0%
	TGACCTGTGTTTGGCGTAGA+GGG	-	chr1_4:46640663-46640682	None:intergenic	50.0%
	TCGTTGCCTGCAATGCTTGT+AGG	+	chr1_4:46641121-46641140	Msa0165840:CDS	50.0%
!!	GGAACGAGCTCTTTGAAGTG+AGG	-	chr1_4:46641347-46641366	None:intergenic	50.0%
	TTAGCCCATGGCCTATTCCT+TGG	-	chr1_4:46641457-46641476	None:intergenic	50.0%
	GCTCAAACTTGCAAGTCGTG+TGG	-	chr1_4:46641683-46641702	None:intergenic	50.0%
!	AACCTGGTAGCTAGTCTCGA+TGG	-	chr1_4:46641757-46641776	None:intergenic	50.0%
!!	GGGTCAAGAATGGTGCCACA+AGG	+	chr1_4:46640616-46640635	Msa0165840:intron	55.0%
	CTGACCTGTGTTTGGCGTAG+AGG	-	chr1_4:46640664-46640683	None:intergenic	55.0%
!	CGGCGAATAGGGTATCTCCA+AGG	+	chr1_4:46641437-46641456	Msa0165840:CDS	55.0%
!	CTCCATCGAGACTAGCTACC+AGG	+	chr1_4:46641752-46641771	Msa0165840:CDS	55.0%
!!	GGGTCAAGAATGGTGCCACA+AGG	+	chr1_4:46640616-46640635	Msa0165840:intron	55.0%
	CTGACCTGTGTTTGGCGTAG+AGG	-	chr1_4:46640664-46640683	None:intergenic	55.0%
!	CGGCGAATAGGGTATCTCCA+AGG	+	chr1_4:46641437-46641456	Msa0165840:CDS	55.0%
!	CTCCATCGAGACTAGCTACC+AGG	+	chr1_4:46641752-46641771	Msa0165840:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	46640037	46642052	46640037	ID=Msa0165840;Name=Msa0165840
chr1_4	mRNA	46640037	46642052	46640037	ID=Msa0165840-mRNA-1;Parent=Msa0165840;Name=Msa0165840-mRNA-1;_AED=0.11;_eAED=0.11;_QI=172\|1\|1\|1\|1\|1\|4\|164\|356
chr1_4	exon	46640037	46640289	46640037	ID=Msa0165840-mRNA-1:exon:13447;Parent=Msa0165840-mRNA-1
chr1_4	exon	46640393	46640535	46640393	ID=Msa0165840-mRNA-1:exon:13448;Parent=Msa0165840-mRNA-1
chr1_4	exon	46640617	46640678	46640617	ID=Msa0165840-mRNA-1:exon:13449;Parent=Msa0165840-mRNA-1
chr1_4	exon	46641104	46642052	46641104	ID=Msa0165840-mRNA-1:exon:13450;Parent=Msa0165840-mRNA-1
chr1_4	five_prime_UTR	46640037	46640208	46640037	ID=Msa0165840-mRNA-1:five_prime_utr;Parent=Msa0165840-mRNA-1
chr1_4	CDS	46640209	46640289	46640209	ID=Msa0165840-mRNA-1:cds;Parent=Msa0165840-mRNA-1
chr1_4	CDS	46640393	46640535	46640393	ID=Msa0165840-mRNA-1:cds;Parent=Msa0165840-mRNA-1
chr1_4	CDS	46640617	46640678	46640617	ID=Msa0165840-mRNA-1:cds;Parent=Msa0165840-mRNA-1
chr1_4	CDS	46641104	46641888	46641104	ID=Msa0165840-mRNA-1:cds;Parent=Msa0165840-mRNA-1
chr1_4	three_prime_UTR	46641889	46642052	46641889	ID=Msa0165840-mRNA-1:three_prime_utr;Parent=Msa0165840-mRNA-1

Gene Sequence

>Msa0165840

ATGGTTGCGAGAACCCCACCAAAGCTTAAGAGAACTTTAGCTGCTCTAAATCCTGTTCTCATTAGAGAAACACTCAACAAGGTGGATCAATGCATGGCTCGGCTGCAAGAACTTCAGAACACTGCAACTGGTGGAAACAAGGTTGTGTCAGGGGTCAATCTTAGCCCACGAAGTACCATAGGTTATCTCAAAACTAGTCTCAGGTGCAAGCAAGAATCACTCAGGGTCAAGAATGGTGCCACAAGGAAATCTCCTGTGGGAAAGTTTCCCTCTACGCCAAACACAGGTGAATGGAGGCGAATGTCGTTGCCTGCAATGCTTGTAGGAGAAACTCTTGGAGAAATTTTACAGGCTAGTCAATTTGCAAGAGAAATTGTTTCAGCAGTTGGTGACAAAACTCCCTCCAAAGATGACCCAAAAACACCAATGTCTCAAAGGCCAAGCAAGAAAATAAACCTCGAAAACACACAACTTAAGTCTAGAAGGAAGAAGGAGAAACAAACTAAACTACACAATGACGGTTCTCCCTCACTTCAAAGAGCTCGTTCCAGAATCACTTTTAAGGTTTCTCCTCCAAAAGTTAAAGAATTTGATAGAGAAAGCAACAAGTATTTGTCTTCGGCGAATAGGGTATCTCCAAGGAATAGGCCATGGGCTAAAAAAACTGTACTTTTCCCCAACCCTTTGTTCAAGTCAACTCAATGTTCTTCATCACAGTCACAGCAACAGCAGTTTTGCAAAACAAGGTCTCCTATTATTTCAAGAAATCGAGGACCAACAACACCACACAAGTTTTTGATTAAATCTCCACCTTCAAACTCCAAAGTCAAGATCAAAAGCACTACAACTGTGTCTATTTCACCCACACGACTTGCAAGTTTGAGCAAGAATTCTCCAAAAAGATCGACTGCGGCTAAACTCCGTCGATCTTTCTCTCCATCGAGACTAGCTACCAGGTTAGTTTCACCATTAAGGAGCAAGAAAACTGCACAGAAAAGTGATGGAATTGTAAGTGGACTGAAACAGCGCCCAGTATCAACAGTTCAATTCCCTTCTAGTAGAAGAATGTAA

Protein sequence

>Msa0165840

MVARTPPKLKRTLAALNPVLIRETLNKVDQCMARLQELQNTATGGNKVVSGVNLSPRSTIGYLKTSLRCKQESLRVKNGATRKSPVGKFPSTPNTGEWRRMSLPAMLVGETLGEILQASQFAREIVSAVGDKTPSKDDPKTPMSQRPSKKINLENTQLKSRRKKEKQTKLHNDGSPSLQRARSRITFKVSPPKVKEFDRESNKYLSSANRVSPRNRPWAKKTVLFPNPLFKSTQCSSSQSQQQQFCKTRSPIISRNRGPTTPHKFLIKSPPSNSKVKIKSTTTVSISPTRLASLSKNSPKRSTAAKLRRSFSPSRLATRLVSPLRSKKTAQKSDGIVSGLKQRPVSTVQFPSSRRM*