Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0959310 | sp|Q945S8|ASHH3_ARATH | 61.649 | 279 | 67 | 5 | 1 | 239 | 1 | 279 | 1.45e-99 | 297 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0959310 | G7KMG0 | 86.742 | 264 | 7 | 2 | 1 | 236 | 1 | 264 | 3.90e-164 | 466 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0959310 | TR | SET |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003700 | Msa0959310 | 0.801158 | 1.027631e-48 | -8.615850e-47 |
| Msa0017510 | Msa0959310 | 0.811993 | 5.300844e-51 | -8.615850e-47 |
| Msa0028640 | Msa0959310 | 0.816438 | 5.530812e-52 | -8.615850e-47 |
| Msa0032090 | Msa0959310 | 0.821998 | 2.996635e-53 | -8.615850e-47 |
| Msa0032430 | Msa0959310 | 0.824074 | 9.830779e-54 | -8.615850e-47 |
| Msa0040450 | Msa0959310 | 0.849978 | 2.285089e-60 | -8.615850e-47 |
| Msa0054440 | Msa0959310 | 0.806321 | 8.707042e-50 | -8.615850e-47 |
| Msa0054480 | Msa0959310 | 0.831311 | 1.794215e-55 | -8.615850e-47 |
| Msa0079380 | Msa0959310 | 0.837262 | 5.764757e-57 | -8.615850e-47 |
| Msa0094140 | Msa0959310 | 0.813714 | 2.225353e-51 | -8.615850e-47 |
| Msa0101700 | Msa0959310 | 0.807680 | 4.490443e-50 | -8.615850e-47 |
| Msa0616220 | Msa0959310 | 0.802726 | 4.893604e-49 | -8.615850e-47 |
| Msa0625720 | Msa0959310 | 0.825988 | 3.470327e-54 | -8.615850e-47 |
| Msa0633700 | Msa0959310 | 0.806566 | 7.729039e-50 | -8.615850e-47 |
| Msa0639430 | Msa0959310 | 0.802982 | 4.332264e-49 | -8.615850e-47 |
| Msa0650020 | Msa0959310 | 0.809396 | 1.931603e-50 | -8.615850e-47 |
| Msa0655560 | Msa0959310 | 0.816859 | 4.449072e-52 | -8.615850e-47 |
| Msa0663390 | Msa0959310 | 0.820344 | 7.208933e-53 | -8.615850e-47 |
| Msa0698770 | Msa0959310 | 0.805575 | 1.249282e-49 | -8.615850e-47 |
| Msa0701900 | Msa0959310 | 0.819165 | 1.339902e-52 | -8.615850e-47 |
| Msa0704600 | Msa0959310 | 0.821361 | 4.206600e-53 | -8.615850e-47 |
| Msa0727710 | Msa0959310 | 0.805285 | 1.436911e-49 | -8.615850e-47 |
| Msa0737570 | Msa0959310 | 0.824200 | 9.180452e-54 | -8.615850e-47 |
| Msa0744040 | Msa0959310 | 0.808529 | 2.962236e-50 | -8.615850e-47 |
| Msa0762970 | Msa0959310 | 0.808422 | 3.122063e-50 | -8.615850e-47 |
| Msa0767300 | Msa0959310 | 0.820645 | 6.148118e-53 | -8.615850e-47 |
| Msa0824660 | Msa0959310 | 0.816319 | 5.880903e-52 | -8.615850e-47 |
| Msa0123100 | Msa0959310 | 0.813443 | 2.553615e-51 | -8.615850e-47 |
| Msa0146260 | Msa0959310 | 0.805596 | 1.236674e-49 | -8.615850e-47 |
| Msa0157290 | Msa0959310 | 0.812427 | 4.262339e-51 | -8.615850e-47 |
| Msa0171290 | Msa0959310 | 0.813856 | 2.070993e-51 | -8.615850e-47 |
| Msa0172070 | Msa0959310 | 0.828672 | 7.893946e-55 | -8.615850e-47 |
| Msa0212990 | Msa0959310 | 0.810058 | 1.392342e-50 | -8.615850e-47 |
| Msa0225740 | Msa0959310 | 0.800937 | 1.139904e-48 | -8.615850e-47 |
| Msa0225760 | Msa0959310 | 0.810985 | 8.778893e-51 | -8.615850e-47 |
| Msa0366240 | Msa0959310 | 0.816926 | 4.298941e-52 | -8.615850e-47 |
| Msa0395870 | Msa0959310 | 0.802882 | 4.544061e-49 | -8.615850e-47 |
| Msa0410500 | Msa0959310 | 0.812049 | 5.155412e-51 | -8.615850e-47 |
| Msa0410650 | Msa0959310 | 0.813202 | 2.884220e-51 | -8.615850e-47 |
| Msa0417270 | Msa0959310 | 0.815792 | 7.710850e-52 | -8.615850e-47 |
| Msa0417880 | Msa0959310 | 0.818320 | 2.084774e-52 | -8.615850e-47 |
| Msa0475790 | Msa0959310 | 0.803973 | 2.699793e-49 | -8.615850e-47 |
| Msa0479170 | Msa0959310 | 0.805405 | 1.356533e-49 | -8.615850e-47 |
| Msa0481530 | Msa0959310 | 0.816083 | 6.639508e-52 | -8.615850e-47 |
| Msa0244860 | Msa0959310 | 0.805402 | 1.357961e-49 | -8.615850e-47 |
| Msa0260610 | Msa0959310 | 0.803995 | 2.670635e-49 | -8.615850e-47 |
| Msa0260670 | Msa0959310 | 0.804036 | 2.619564e-49 | -8.615850e-47 |
| Msa0261340 | Msa0959310 | 0.806263 | 8.956812e-50 | -8.615850e-47 |
| Msa0283450 | Msa0959310 | 0.810563 | 1.082947e-50 | -8.615850e-47 |
| Msa0283520 | Msa0959310 | 0.819790 | 9.654154e-53 | -8.615850e-47 |
| Msa0284410 | Msa0959310 | 0.831049 | 2.080288e-55 | -8.615850e-47 |
| Msa0292120 | Msa0959310 | 0.800874 | 1.174335e-48 | -8.615850e-47 |
| Msa0292400 | Msa0959310 | 0.803393 | 3.560938e-49 | -8.615850e-47 |
| Msa0300690 | Msa0959310 | 0.821792 | 3.344604e-53 | -8.615850e-47 |
| Msa0309770 | Msa0959310 | 0.816717 | 4.789307e-52 | -8.615850e-47 |
| Msa0330340 | Msa0959310 | 0.811843 | 5.714977e-51 | -8.615850e-47 |
| Msa0332000 | Msa0959310 | 0.817422 | 3.325467e-52 | -8.615850e-47 |
| Msa0337620 | Msa0959310 | 0.800090 | 1.696362e-48 | -8.615850e-47 |
| Msa0484780 | Msa0959310 | 0.814048 | 1.878978e-51 | -8.615850e-47 |
| Msa0488560 | Msa0959310 | 0.810144 | 1.333947e-50 | -8.615850e-47 |
| Msa0498060 | Msa0959310 | 0.805292 | 1.432119e-49 | -8.615850e-47 |
| Msa0503060 | Msa0959310 | 0.802031 | 6.803719e-49 | -8.615850e-47 |
| Msa0507680 | Msa0959310 | 0.823525 | 1.321932e-53 | -8.615850e-47 |
| Msa0511310 | Msa0959310 | 0.806643 | 7.444530e-50 | -8.615850e-47 |
| Msa0529890 | Msa0959310 | 0.818380 | 2.020033e-52 | -8.615850e-47 |
| Msa0546680 | Msa0959310 | 0.818710 | 1.700956e-52 | -8.615850e-47 |
| Msa0557070 | Msa0959310 | 0.806481 | 8.056134e-50 | -8.615850e-47 |
| Msa0569200 | Msa0959310 | 0.804145 | 2.485983e-49 | -8.615850e-47 |
| Msa0585560 | Msa0959310 | 0.824022 | 1.010611e-53 | -8.615850e-47 |
| Msa0850960 | Msa0959310 | 0.816557 | 5.202206e-52 | -8.615850e-47 |
| Msa0856910 | Msa0959310 | 0.805745 | 1.150895e-49 | -8.615850e-47 |
| Msa0856920 | Msa0959310 | 0.833813 | 4.297425e-56 | -8.615850e-47 |
| Msa0863930 | Msa0959310 | 0.800159 | 1.642468e-48 | -8.615850e-47 |
| Msa0876060 | Msa0959310 | 0.819022 | 1.444269e-52 | -8.615850e-47 |
| Msa0876200 | Msa0959310 | 0.800495 | 1.402880e-48 | -8.615850e-47 |
| Msa0880140 | Msa0959310 | 0.810732 | 9.959531e-51 | -8.615850e-47 |
| Msa0896750 | Msa0959310 | 0.804053 | 2.598393e-49 | -8.615850e-47 |
| Msa0920610 | Msa0959310 | 0.834734 | 2.524928e-56 | -8.615850e-47 |
| Msa0920870 | Msa0959310 | 0.825475 | 4.594481e-54 | -8.615850e-47 |
| Msa0923330 | Msa0959310 | 0.812346 | 4.439760e-51 | -8.615850e-47 |
| Msa0959310 | Msa0993310 | 0.820399 | 7.002271e-53 | -8.615850e-47 |
| Msa0959310 | Msa1004800 | 0.818742 | 1.672378e-52 | -8.615850e-47 |
| Msa0959310 | Msa1004840 | 0.822567 | 2.210923e-53 | -8.615850e-47 |
| Msa0959310 | Msa1047080 | 0.805004 | 1.645648e-49 | -8.615850e-47 |
| Msa0959310 | Msa1063950 | 0.817055 | 4.022193e-52 | -8.615850e-47 |
| Msa0959310 | Msa1082500 | 0.802360 | 5.821944e-49 | -8.615850e-47 |
| Msa0959310 | Msa1085200 | 0.804680 | 1.923118e-49 | -8.615850e-47 |
| Msa0959310 | Msa1106700 | 0.804401 | 2.198338e-49 | -8.615850e-47 |
| Msa0959310 | Msa1108160 | 0.822547 | 2.234918e-53 | -8.615850e-47 |
| Msa0959310 | Msa1142020 | 0.803126 | 4.045062e-49 | -8.615850e-47 |
| Msa0959310 | Msa1147900 | 0.836797 | 7.578303e-57 | -8.615850e-47 |
| Msa0959310 | Msa1151910 | 0.825603 | 4.284365e-54 | -8.615850e-47 |
| Msa0959310 | Msa1165740 | 0.814056 | 1.870662e-51 | -8.615850e-47 |
| Msa0959310 | Msa1171710 | 0.807702 | 4.442434e-50 | -8.615850e-47 |
| Msa0959310 | Msa1199570 | 0.804607 | 1.991865e-49 | -8.615850e-47 |
| Msa0959310 | Msa1209460 | 0.842696 | 2.208848e-58 | -8.615850e-47 |
| Msa0959310 | Msa1231550 | 0.800350 | 1.502095e-48 | -8.615850e-47 |
| Msa0959310 | Msa1261010 | 0.800245 | 1.577572e-48 | -8.615850e-47 |
| Msa0959310 | Msa1269240 | 0.816599 | 5.089289e-52 | -8.615850e-47 |
| Msa0959310 | Msa1276660 | 0.807632 | 4.598443e-50 | -8.615850e-47 |
| Msa0959310 | Msa1280420 | 0.809627 | 1.723062e-50 | -8.615850e-47 |
| Msa0959310 | Msa1297290 | 0.824024 | 1.009923e-53 | -8.615850e-47 |
| Msa0959310 | Msa1300490 | 0.805725 | 1.162172e-49 | -8.615850e-47 |
| Msa0959310 | Msa1302830 | 0.812422 | 4.274220e-51 | -8.615850e-47 |
| Msa0959310 | Msa1336110 | 0.801866 | 7.356464e-49 | -8.615850e-47 |
| Msa0959310 | Msa1343070 | 0.804533 | 2.063709e-49 | -8.615850e-47 |
| Msa0959310 | Msa1366600 | 0.828397 | 9.196662e-55 | -8.615850e-47 |
| Msa0959310 | Msa1374040 | 0.803809 | 2.919582e-49 | -8.615850e-47 |
| Msa0959310 | Msa1385000 | 0.827618 | 1.416329e-54 | -8.615850e-47 |
| Msa0959310 | Msa1409870 | 0.812250 | 4.660243e-51 | -8.615850e-47 |
| Msa0959310 | Msa1423350 | 0.806616 | 7.544466e-50 | -8.615850e-47 |
| Msa0959310 | Msa1461300 | 0.806214 | 9.172434e-50 | -8.615850e-47 |
| Msa0959310 | Msa1463670 | 0.806151 | 9.452742e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0959310 | MtrunA17_Chr6g0477001 | 86.742 | 264 | 7 | 2 | 1 | 236 | 1 | 264 | 7.51e-168 | 466 |
| Msa0959310 | MtrunA17_Chr2g0305371 | 43.363 | 226 | 94 | 4 | 28 | 225 | 255 | 474 | 4.10e-54 | 181 |
| Msa0959310 | MtrunA17_Chr1g0201621 | 36.574 | 216 | 105 | 5 | 42 | 225 | 11 | 226 | 2.91e-32 | 122 |
| Msa0959310 | MtrunA17_Chr1g0201311 | 36.574 | 216 | 105 | 5 | 42 | 225 | 11 | 226 | 3.75e-32 | 122 |
| Msa0959310 | MtrunA17_Chr3g0125251 | 33.188 | 229 | 119 | 6 | 28 | 224 | 1240 | 1466 | 4.26e-28 | 112 |
| Msa0959310 | MtrunA17_Chr5g0403241 | 34.211 | 152 | 79 | 2 | 84 | 214 | 1325 | 1476 | 4.13e-17 | 80.5 |
| Msa0959310 | MtrunA17_Chr4g0075321 | 34.959 | 123 | 69 | 1 | 84 | 195 | 882 | 1004 | 1.14e-15 | 76.3 |
| Msa0959310 | MtrunA17_Chr8g0373821 | 33.103 | 145 | 88 | 1 | 84 | 219 | 359 | 503 | 2.65e-15 | 74.7 |
| Msa0959310 | MtrunA17_Chr5g0399801 | 31.618 | 136 | 71 | 3 | 86 | 199 | 891 | 1026 | 2.09e-12 | 66.6 |
| Msa0959310 | MtrunA17_Chr7g0255181 | 25.676 | 148 | 96 | 1 | 86 | 219 | 519 | 666 | 4.87e-12 | 65.1 |
| Msa0959310 | MtrunA17_Chr3g0080761 | 28.472 | 144 | 69 | 2 | 86 | 199 | 461 | 600 | 9.54e-12 | 64.3 |
| Msa0959310 | MtrunA17_Chr4g0003511 | 29.412 | 136 | 74 | 2 | 86 | 199 | 854 | 989 | 2.48e-11 | 63.2 |
| Msa0959310 | MtrunA17_Chr2g0297191 | 36.471 | 85 | 54 | 0 | 111 | 195 | 1032 | 1116 | 2.79e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0959310 | AT2G44150.1 | 61.649 | 279 | 67 | 5 | 1 | 239 | 1 | 279 | 1.47e-100 | 297 |
| Msa0959310 | AT3G59960.3 | 56.767 | 266 | 84 | 4 | 1 | 237 | 1 | 264 | 5.61e-83 | 249 |
| Msa0959310 | AT3G59960.2 | 56.767 | 266 | 84 | 4 | 1 | 237 | 1 | 264 | 5.61e-83 | 249 |
| Msa0959310 | AT3G59960.4 | 56.767 | 266 | 84 | 4 | 1 | 237 | 1 | 264 | 5.61e-83 | 249 |
| Msa0959310 | AT3G59960.1 | 56.767 | 266 | 84 | 4 | 1 | 237 | 1 | 264 | 4.92e-82 | 248 |
| Msa0959310 | AT4G30860.1 | 40.637 | 251 | 112 | 5 | 10 | 229 | 227 | 471 | 2.52e-54 | 182 |
| Msa0959310 | AT1G76710.2 | 35.556 | 225 | 113 | 4 | 33 | 225 | 7 | 231 | 4.61e-32 | 122 |
| Msa0959310 | AT1G76710.1 | 35.556 | 225 | 113 | 4 | 33 | 225 | 7 | 231 | 4.61e-32 | 122 |
| Msa0959310 | AT1G76710.4 | 35.556 | 225 | 113 | 4 | 33 | 225 | 7 | 231 | 4.62e-32 | 122 |
| Msa0959310 | AT1G76710.3 | 35.556 | 225 | 113 | 4 | 33 | 225 | 7 | 231 | 4.92e-32 | 122 |
| Msa0959310 | AT1G77300.1 | 34.722 | 216 | 109 | 5 | 43 | 226 | 955 | 1170 | 1.41e-28 | 114 |
| Msa0959310 | AT1G77300.2 | 34.722 | 216 | 109 | 5 | 43 | 226 | 955 | 1170 | 2.03e-28 | 113 |
| Msa0959310 | AT2G35160.5 | 37.719 | 114 | 67 | 1 | 86 | 199 | 586 | 695 | 3.51e-16 | 77.8 |
| Msa0959310 | AT2G35160.2 | 37.719 | 114 | 67 | 1 | 86 | 199 | 622 | 731 | 3.76e-16 | 77.8 |
| Msa0959310 | AT2G35160.3 | 37.719 | 114 | 67 | 1 | 86 | 199 | 622 | 731 | 3.76e-16 | 77.8 |
| Msa0959310 | AT2G35160.1 | 37.719 | 114 | 67 | 1 | 86 | 199 | 622 | 731 | 3.76e-16 | 77.8 |
| Msa0959310 | AT2G35160.4 | 37.719 | 114 | 67 | 1 | 86 | 199 | 622 | 731 | 3.76e-16 | 77.8 |
| Msa0959310 | AT2G23740.1 | 31.515 | 165 | 91 | 3 | 84 | 227 | 1190 | 1353 | 4.65e-15 | 74.7 |
| Msa0959310 | AT2G23740.3 | 31.515 | 165 | 91 | 3 | 84 | 227 | 1197 | 1360 | 4.93e-15 | 74.7 |
| Msa0959310 | AT2G23740.6 | 31.515 | 165 | 91 | 3 | 84 | 227 | 1197 | 1360 | 4.93e-15 | 74.7 |
| Msa0959310 | AT2G23740.2 | 31.515 | 165 | 91 | 3 | 84 | 227 | 1197 | 1360 | 4.93e-15 | 74.7 |
| Msa0959310 | AT2G22740.2 | 28.283 | 198 | 80 | 7 | 87 | 222 | 592 | 789 | 1.18e-12 | 67.4 |
| Msa0959310 | AT2G22740.1 | 28.283 | 198 | 80 | 7 | 87 | 222 | 592 | 789 | 1.18e-12 | 67.4 |
| Msa0959310 | AT2G23740.4 | 34.454 | 119 | 65 | 2 | 84 | 190 | 1197 | 1314 | 1.31e-11 | 64.7 |
| Msa0959310 | AT2G23740.5 | 34.454 | 119 | 65 | 2 | 84 | 190 | 1197 | 1314 | 1.31e-11 | 64.7 |
| Msa0959310 | AT5G42400.7 | 34.921 | 126 | 55 | 4 | 124 | 222 | 1262 | 1387 | 1.87e-11 | 63.9 |
| Msa0959310 | AT5G42400.2 | 34.921 | 126 | 55 | 4 | 124 | 222 | 1262 | 1387 | 1.87e-11 | 63.9 |
| Msa0959310 | AT5G42400.8 | 34.921 | 126 | 55 | 4 | 124 | 222 | 1262 | 1387 | 1.87e-11 | 63.9 |
| Msa0959310 | AT5G42400.5 | 34.921 | 126 | 55 | 4 | 124 | 222 | 1262 | 1387 | 1.87e-11 | 63.9 |
| Msa0959310 | AT5G42400.4 | 34.921 | 126 | 55 | 4 | 124 | 222 | 1262 | 1387 | 1.87e-11 | 63.9 |
| Msa0959310 | AT5G42400.1 | 34.921 | 126 | 55 | 4 | 124 | 222 | 1262 | 1387 | 1.87e-11 | 63.9 |
| Msa0959310 | AT5G42400.3 | 34.921 | 126 | 55 | 4 | 124 | 222 | 1262 | 1387 | 1.87e-11 | 63.9 |
| Msa0959310 | AT5G42400.6 | 34.921 | 126 | 55 | 4 | 124 | 222 | 1262 | 1387 | 1.87e-11 | 63.9 |
| Msa0959310 | AT3G03750.2 | 33.043 | 115 | 65 | 2 | 90 | 192 | 170 | 284 | 3.78e-11 | 62.4 |
Find 73 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAAATTGATGAAAATTT+AGG | 0.173069 | 6_3:+75870540 | Msa0959310:intron |
| AAAGGATACTGCGCTTTATA+TGG | 0.211128 | 6_3:-75871542 | None:intergenic |
| AGTTATCAAAATGCGGTTAT+TGG | 0.214523 | 6_3:+75870697 | Msa0959310:five_prime_UTR |
| ACCTGATATGCCACTAATTT+AGG | 0.249497 | 6_3:-75873493 | None:intergenic |
| CATAGCAGGTTTGTTCAATT+TGG | 0.254145 | 6_3:+75873403 | Msa0959310:intron |
| TGACTTTACAATTTGCTTAG+AGG | 0.261492 | 6_3:+75870751 | Msa0959310:five_prime_UTR |
| CATTTCTGCATCTCAGTATT+CGG | 0.269242 | 6_3:-75872778 | None:intergenic |
| GTTTCATTAGACTATTGATT+AGG | 0.285911 | 6_3:+75873647 | Msa0959310:three_prime_UTR |
| TTCAATGCCCATCATGAAAA+AGG | 0.289802 | 6_3:+75871105 | Msa0959310:exon |
| GCCTAAATTAGTGGCATATC+AGG | 0.297012 | 6_3:+75873492 | Msa0959310:CDS |
| TTTCATTAGACTATTGATTA+GGG | 0.314838 | 6_3:+75873648 | Msa0959310:three_prime_UTR |
| CAAATTGTTCTTCATGCTAT+AGG | 0.320033 | 6_3:+75871040 | Msa0959310:five_prime_UTR |
| ACTCTGTTGGACAGTCTAAA+AGG | 0.320983 | 6_3:+75870848 | Msa0959310:five_prime_UTR |
| TCAGGGTGATACAGAATTAA+AGG | 0.338735 | 6_3:-75870826 | None:intergenic |
| CTTCTGTCTAGCTGTTCTTC+AGG | 0.341155 | 6_3:+75872087 | Msa0959310:CDS |
| CAGTATTCGGGCAGCAACTA+TGG | 0.356191 | 6_3:-75872765 | None:intergenic |
| GTGATAGATGCGACAAATAA+AGG | 0.361111 | 6_3:+75872721 | Msa0959310:CDS |
| CCGAACATCTTTCCGCTGTT+AGG | 0.371687 | 6_3:+75870879 | Msa0959310:five_prime_UTR |
| TCTGTATTGTTCTTCTATAC+AGG | 0.378050 | 6_3:+75870606 | Msa0959310:five_prime_UTR |
| TTAGACTGTCCAACAGAGTC+AGG | 0.379744 | 6_3:-75870844 | None:intergenic |
| TGTTCAATGTAGGCGTAAGC+TGG | 0.427738 | 6_3:+75873453 | Msa0959310:CDS |
| AAACATGCGAACAGAGGCTT+TGG | 0.435383 | 6_3:+75872641 | Msa0959310:CDS |
| TATGAAAATGTGAGATAAGA+TGG | 0.441091 | 6_3:+75870724 | Msa0959310:five_prime_UTR |
| ATGCGAAATCAATCGAGATA+TGG | 0.441968 | 6_3:+75872699 | Msa0959310:CDS |
| CGAATACTGAGATGCAGAAA+TGG | 0.448001 | 6_3:+75872779 | Msa0959310:CDS |
| TAGGAAGAGAATACCTTTGA+AGG | 0.448746 | 6_3:+75871059 | Msa0959310:five_prime_UTR |
| ACCTACCAAGCCTAAATTAG+TGG | 0.455934 | 6_3:+75873483 | Msa0959310:CDS |
| GGCAAGAGAAAGAGTGATGA+TGG | 0.457143 | 6_3:+75871805 | Msa0959310:CDS |
| CTAAAATATATGTTCATAGC+TGG | 0.463897 | 6_3:+75873813 | Msa0959310:three_prime_UTR |
| GACTTTCTTGCTTCCTTCAA+AGG | 0.464506 | 6_3:-75871072 | None:intergenic |
| CAGATGAAGATATAAAGCTT+GGG | 0.468240 | 6_3:+75872479 | Msa0959310:CDS |
| TAGACTGAGAAATGTGGATC+TGG | 0.471672 | 6_3:+75872448 | Msa0959310:intron |
| TCAGTATAATCGACGATGGT+TGG | 0.472557 | 6_3:+75873698 | Msa0959310:three_prime_UTR |
| AGATATATATCTCACTAAGA+AGG | 0.474007 | 6_3:+75871783 | Msa0959310:intron |
| AAGGATACTGCGCTTTATAT+GGG | 0.477321 | 6_3:-75871541 | None:intergenic |
| ATTTCTGCATCTCAGTATTC+GGG | 0.478549 | 6_3:-75872777 | None:intergenic |
| GCAGATGAAGATATAAAGCT+TGG | 0.481699 | 6_3:+75872478 | Msa0959310:CDS |
| ACGAAGCTGATGAACAATCT+TGG | 0.488292 | 6_3:+75871462 | Msa0959310:CDS |
| TGTTCTTCAGGCTGCAAATG+TGG | 0.494922 | 6_3:+75872099 | Msa0959310:CDS |
| ATATGCCACTAATTTAGGCT+TGG | 0.510433 | 6_3:-75873488 | None:intergenic |
| CCTAACAGCGGAAAGATGTT+CGG | 0.525790 | 6_3:-75870879 | None:intergenic |
| GTTCTTCAGGCTGCAAATGT+GGG | 0.537608 | 6_3:+75872100 | Msa0959310:CDS |
| GATATATATCTCACTAAGAA+GGG | 0.539250 | 6_3:+75871784 | Msa0959310:intron |
| CTGTATCACCCTGACTCTGT+TGG | 0.540631 | 6_3:+75870835 | Msa0959310:five_prime_UTR |
| GTAATTGAATATGTCGGAGA+AGG | 0.545438 | 6_3:+75872508 | Msa0959310:CDS |
| TTGATATTATTGAAAAGACA+TGG | 0.552835 | 6_3:-75873554 | None:intergenic |
| AACAAATCATTCAACATAGG+AGG | 0.555618 | 6_3:-75873676 | None:intergenic |
| CTGAACAAATCATTCAACAT+AGG | 0.562463 | 6_3:-75873679 | None:intergenic |
| GACGGTTAATCTAAAATGAA+CGG | 0.563412 | 6_3:-75870804 | None:intergenic |
| GCCACTAATTTAGGCTTGGT+AGG | 0.568833 | 6_3:-75873484 | None:intergenic |
| ACTGTGGTGCTGTTCAATGT+AGG | 0.576878 | 6_3:+75873443 | Msa0959310:CDS |
| GAAGCAAGAAAGTCTTGTTG+TGG | 0.583896 | 6_3:+75871081 | Msa0959310:five_prime_UTR |
| AAGAACAATACAGATCCTAC+AGG | 0.585263 | 6_3:-75870597 | None:intergenic |
| TCTGATTCTACTGCTGTATG+TGG | 0.586087 | 6_3:+75871850 | Msa0959310:CDS |
| GAGTTTGTAATTGAATATGT+CGG | 0.587237 | 6_3:+75872502 | Msa0959310:CDS |
| TGATACAAACTAAGTCCTGT+AGG | 0.601721 | 6_3:+75870582 | Msa0959310:five_prime_UTR |
| TAGACTGTCCAACAGAGTCA+GGG | 0.604290 | 6_3:-75870843 | None:intergenic |
| GTTCAATGTAGGCGTAAGCT+GGG | 0.608277 | 6_3:+75873454 | Msa0959310:CDS |
| CTTTGGAATATGAAAGATCG+TGG | 0.610205 | 6_3:+75872658 | Msa0959310:CDS |
| TTGTTCAGTATAATCGACGA+TGG | 0.627706 | 6_3:+75873694 | Msa0959310:three_prime_UTR |
| TTTGGAATATGAAAGATCGT+GGG | 0.627929 | 6_3:+75872659 | Msa0959310:CDS |
| ATGATAAAACATGCGAACAG+AGG | 0.637191 | 6_3:+75872635 | Msa0959310:CDS |
| AGATGAAGATATAAAGCTTG+GGG | 0.642869 | 6_3:+75872480 | Msa0959310:CDS |
| GTGGTAGAGATTGCCACTGT+GGG | 0.651295 | 6_3:+75871869 | Msa0959310:CDS |
| GAAATGTGGATCTGGAATTG+TGG | 0.670067 | 6_3:+75872456 | Msa0959310:CDS |
| GGTGATACAGAATTAAAGGA+CGG | 0.682280 | 6_3:-75870822 | None:intergenic |
| TGTGGTAGAGATTGCCACTG+TGG | 0.693149 | 6_3:+75871868 | Msa0959310:CDS |
| TTGGAATATGAAAGATCGTG+GGG | 0.693630 | 6_3:+75872660 | Msa0959310:CDS |
| GCAGATCAAGATTGCCACTG+TGG | 0.694777 | 6_3:+75873427 | Msa0959310:CDS |
| TACATTGAACAGCACCACAG+TGG | 0.726690 | 6_3:-75873441 | None:intergenic |
| AACAAGACAAAACCTAACAG+CGG | 0.732533 | 6_3:-75870891 | None:intergenic |
| ACTTAGTTACTTACCCACAG+TGG | 0.732787 | 6_3:-75871882 | None:intergenic |
| TGCTTGTAGACTGAGAAATG+TGG | 0.734376 | 6_3:+75872442 | Msa0959310:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAATTTCATCTTTTTAAT+AGG | - | chr6_3:75872159-75872178 | None:intergenic | 10.0% |
| !!! | TAAATTATATTTCTGTATGT+TGG | + | chr6_3:75870381-75870400 | Msa0959310:intron | 15.0% |
| !! | ATTGAAATTGATGAAAATTT+AGG | + | chr6_3:75870540-75870559 | Msa0959310:intron | 15.0% |
| !! | TAAAAATAGTTATCAAAATG+CGG | + | chr6_3:75870690-75870709 | Msa0959310:five_prime_UTR | 15.0% |
| !!! | TTTTAAGTAAAACTAATTCA+AGG | - | chr6_3:75871016-75871035 | None:intergenic | 15.0% |
| !! | TGAAACATAAATAGAATATA+AGG | - | chr6_3:75871171-75871190 | None:intergenic | 15.0% |
| !! | TAAAAAGATGAAATTAATCA+AGG | + | chr6_3:75872161-75872180 | Msa0959310:CDS | 15.0% |
| !!! | ATTTTAGAGAAACTTTATTT+AGG | + | chr6_3:75872356-75872375 | Msa0959310:intron | 15.0% |
| !! | AATTGTTAACAGATAAAAAG+TGG | + | chr6_3:75870656-75870675 | Msa0959310:five_prime_UTR | 20.0% |
| !!! | TGGTCTTTTAAAATTTAAGA+TGG | + | chr6_3:75871234-75871253 | Msa0959310:intron | 20.0% |
| !!! | ACCTTTTTAGATTTTACTTT+TGG | + | chr6_3:75871368-75871387 | Msa0959310:intron | 20.0% |
| !! | ACCAAAAGTAAAATCTAAAA+AGG | - | chr6_3:75871372-75871391 | None:intergenic | 20.0% |
| !!! | ATTTCATCTTTTTAATAGGA+CGG | - | chr6_3:75872155-75872174 | None:intergenic | 20.0% |
| !!! | AAGTAGGTCTAAAATAAAAT+AGG | - | chr6_3:75872580-75872599 | None:intergenic | 20.0% |
| !!! | TTCTAATTTTTATTCACACA+TGG | + | chr6_3:75872808-75872827 | Msa0959310:intron | 20.0% |
| !!! | TCTAATTTTTATTCACACAT+GGG | + | chr6_3:75872809-75872828 | Msa0959310:intron | 20.0% |
| !! | ATTCATCTATCAAATAATGT+AGG | - | chr6_3:75872861-75872880 | None:intergenic | 20.0% |
| !! | TATTTGATAGATGAATAGTT+AGG | + | chr6_3:75872865-75872884 | Msa0959310:intron | 20.0% |
| !! | TTAAATAAGTTAATCCAAAC+AGG | + | chr6_3:75873285-75873304 | Msa0959310:intron | 20.0% |
| !! | TTGATATTATTGAAAAGACA+TGG | - | chr6_3:75873557-75873576 | None:intergenic | 20.0% |
| !!! | TTTCATTAGACTATTGATTA+GGG | + | chr6_3:75873648-75873667 | Msa0959310:three_prime_UTR | 20.0% |
| !!! | GAACATATATTTTAGAGTAT+AGG | - | chr6_3:75873808-75873827 | None:intergenic | 20.0% |
| ! | TATGAAAATGTGAGATAAGA+TGG | + | chr6_3:75870724-75870743 | Msa0959310:five_prime_UTR | 25.0% |
| ! | ATATAAGGAACTCAAATAGA+AGG | - | chr6_3:75871156-75871175 | None:intergenic | 25.0% |
| ! | TCACTATATATATGTGCTTA+TGG | + | chr6_3:75871311-75871330 | Msa0959310:intron | 25.0% |
| !!! | ATTTTACTTTTGGTTTGCTA+AGG | + | chr6_3:75871378-75871397 | Msa0959310:intron | 25.0% |
| !!! | TTTTACTTTTGGTTTGCTAA+GGG | + | chr6_3:75871379-75871398 | Msa0959310:intron | 25.0% |
| ! | AGATATATATCTCACTAAGA+AGG | + | chr6_3:75871783-75871802 | Msa0959310:intron | 25.0% |
| ! | GATATATATCTCACTAAGAA+GGG | + | chr6_3:75871784-75871803 | Msa0959310:intron | 25.0% |
| ! | ATTCATAGTTAAAATGGAGT+AGG | - | chr6_3:75871956-75871975 | None:intergenic | 25.0% |
| ! | ATGTTCGTGATTCATAAAAT+AGG | - | chr6_3:75871982-75872001 | None:intergenic | 25.0% |
| ! | TTGAATCACACACATAAAAT+AGG | - | chr6_3:75872007-75872026 | None:intergenic | 25.0% |
| !! | ATTTTATGTGTGTGATTCAA+TGG | + | chr6_3:75872007-75872026 | Msa0959310:intron | 25.0% |
| !! | TTTTATGTGTGTGATTCAAT+GGG | + | chr6_3:75872008-75872027 | Msa0959310:intron | 25.0% |
| ! | AAAAATAATCCTGATTCAGA+AGG | - | chr6_3:75872192-75872211 | None:intergenic | 25.0% |
| !! | TTCTGAATCAGGATTATTTT+TGG | + | chr6_3:75872191-75872210 | Msa0959310:intron | 25.0% |
| !!! | TCTGAATCAGGATTATTTTT+GGG | + | chr6_3:75872192-75872211 | Msa0959310:intron | 25.0% |
| !! | ATGATTTTCTTATTGCAAGT+TGG | + | chr6_3:75872307-75872326 | Msa0959310:intron | 25.0% |
| ! | GAGTTTGTAATTGAATATGT+CGG | + | chr6_3:75872502-75872521 | Msa0959310:CDS | 25.0% |
| ! | TAACAACAACAATCAAAAGT+AGG | - | chr6_3:75872596-75872615 | None:intergenic | 25.0% |
| ! | TTCTTTGATTACACTCTTTA+AGG | + | chr6_3:75873031-75873050 | Msa0959310:intron | 25.0% |
| ! | TTAATCTATTTACCCAAACA+AGG | - | chr6_3:75873057-75873076 | None:intergenic | 25.0% |
| !! | CTAAATTTTATAAGCTCTCT+AGG | - | chr6_3:75873180-75873199 | None:intergenic | 25.0% |
| ! | TTAGAGAGAACTTACAAAAA+TGG | - | chr6_3:75873230-75873249 | None:intergenic | 25.0% |
| !! | GTTTCATTAGACTATTGATT+AGG | + | chr6_3:75873647-75873666 | Msa0959310:three_prime_UTR | 25.0% |
| ! | CTAAAATATATGTTCATAGC+TGG | + | chr6_3:75873813-75873832 | Msa0959310:three_prime_UTR | 25.0% |
| !! | TTTTCTCTTGTTTGTGTGAA+GGG | + | chr6_3:75870329-75870348 | Msa0959310:intron | 30.0% |
| !!! | TTTCTCTTTTTTGAGAGTGA+TGG | + | chr6_3:75870417-75870436 | Msa0959310:intron | 30.0% |
| !!! | TTCTCTTTTTTGAGAGTGAT+GGG | + | chr6_3:75870418-75870437 | Msa0959310:intron | 30.0% |
| TCTGTATTGTTCTTCTATAC+AGG | + | chr6_3:75870606-75870625 | Msa0959310:five_prime_UTR | 30.0% | |
| AGTTATCAAAATGCGGTTAT+TGG | + | chr6_3:75870697-75870716 | Msa0959310:five_prime_UTR | 30.0% | |
| ! | TGACTTTACAATTTGCTTAG+AGG | + | chr6_3:75870751-75870770 | Msa0959310:five_prime_UTR | 30.0% |
| !!! | TGCTTAGAGGTTTTTAGTTA+TGG | + | chr6_3:75870764-75870783 | Msa0959310:five_prime_UTR | 30.0% |
| ! | GACGGTTAATCTAAAATGAA+CGG | - | chr6_3:75870807-75870826 | None:intergenic | 30.0% |
| CAAATTGTTCTTCATGCTAT+AGG | + | chr6_3:75871040-75871059 | Msa0959310:five_prime_UTR | 30.0% | |
| !! | GAAACAACCTTTTTCATGAT+GGG | - | chr6_3:75871115-75871134 | None:intergenic | 30.0% |
| !! | TGAAACAACCTTTTTCATGA+TGG | - | chr6_3:75871116-75871135 | None:intergenic | 30.0% |
| TCTGATAAACAGAGAATCAA+AGG | - | chr6_3:75871410-75871429 | None:intergenic | 30.0% | |
| TTCCAGATTCGATTAAAAAC+AGG | + | chr6_3:75871505-75871524 | Msa0959310:CDS | 30.0% | |
| AATCTGACCAACACTAATAA+AGG | - | chr6_3:75871563-75871582 | None:intergenic | 30.0% | |
| TAAAGACATTCATCAAGCAA+GGG | - | chr6_3:75871625-75871644 | None:intergenic | 30.0% | |
| ATAAAGACATTCATCAAGCA+AGG | - | chr6_3:75871626-75871645 | None:intergenic | 30.0% | |
| GGCTAAATACAGAAAAAATG+AGG | - | chr6_3:75871694-75871713 | None:intergenic | 30.0% | |
| AGGCAGATTCATAGTTAAAA+TGG | - | chr6_3:75871962-75871981 | None:intergenic | 30.0% | |
| ACAACTCATTATGTCAAATG+TGG | - | chr6_3:75872415-75872434 | None:intergenic | 30.0% | |
| CAGATGAAGATATAAAGCTT+GGG | + | chr6_3:75872479-75872498 | Msa0959310:CDS | 30.0% | |
| AGATGAAGATATAAAGCTTG+GGG | + | chr6_3:75872480-75872499 | Msa0959310:CDS | 30.0% | |
| ! | TTTGGAATATGAAAGATCGT+GGG | + | chr6_3:75872659-75872678 | Msa0959310:CDS | 30.0% |
| !!! | CTTTCTTGTTTTCCATCTTT+AGG | + | chr6_3:75872917-75872936 | Msa0959310:intron | 30.0% |
| !! | TCCATCTTTAGGATAATAGA+TGG | + | chr6_3:75872928-75872947 | Msa0959310:intron | 30.0% |
| ACCATCTATTATCCTAAAGA+TGG | - | chr6_3:75872932-75872951 | None:intergenic | 30.0% | |
| ATAGATGGTGAAACTAGAAT+TGG | + | chr6_3:75872943-75872962 | Msa0959310:intron | 30.0% | |
| !! | ATCAAAGAAAGTACTCATAC+TGG | - | chr6_3:75873020-75873039 | None:intergenic | 30.0% |
| TACTTATATGATGAGCACTT+AGG | - | chr6_3:75873094-75873113 | None:intergenic | 30.0% | |
| TTAGAAGAGAGTTCAACTTA+TGG | - | chr6_3:75873311-75873330 | None:intergenic | 30.0% | |
| ACTCTCTTCTAATGAAAGTT+TGG | + | chr6_3:75873319-75873338 | Msa0959310:intron | 30.0% | |
| !! | TCTAATGAAAGTTTGGTGTT+TGG | + | chr6_3:75873326-75873345 | Msa0959310:intron | 30.0% |
| AACAAATCATTCAACATAGG+AGG | - | chr6_3:75873679-75873698 | None:intergenic | 30.0% | |
| CTGAACAAATCATTCAACAT+AGG | - | chr6_3:75873682-75873701 | None:intergenic | 30.0% | |
| !! | CTTTTCTCTTGTTTGTGTGA+AGG | + | chr6_3:75870328-75870347 | Msa0959310:intron | 35.0% |
| TGATACAAACTAAGTCCTGT+AGG | + | chr6_3:75870582-75870601 | Msa0959310:five_prime_UTR | 35.0% | |
| AAGAACAATACAGATCCTAC+AGG | - | chr6_3:75870600-75870619 | None:intergenic | 35.0% | |
| GGTGATACAGAATTAAAGGA+CGG | - | chr6_3:75870825-75870844 | None:intergenic | 35.0% | |
| TCAGGGTGATACAGAATTAA+AGG | - | chr6_3:75870829-75870848 | None:intergenic | 35.0% | |
| AACAAGACAAAACCTAACAG+CGG | - | chr6_3:75870894-75870913 | None:intergenic | 35.0% | |
| TAGGAAGAGAATACCTTTGA+AGG | + | chr6_3:75871059-75871078 | Msa0959310:five_prime_UTR | 35.0% | |
| TTCAATGCCCATCATGAAAA+AGG | + | chr6_3:75871105-75871124 | Msa0959310:exon | 35.0% | |
| ACTTAACAGAATACAACAGC+AGG | - | chr6_3:75871214-75871233 | None:intergenic | 35.0% | |
| GCTGTTGTATTCTGTTAAGT+TGG | + | chr6_3:75871214-75871233 | Msa0959310:intron | 35.0% | |
| TCTCAAGAAATACTGTACTC+TGG | + | chr6_3:75871261-75871280 | Msa0959310:intron | 35.0% | |
| !!! | GTCCTGTTTTTAATCGAATC+TGG | - | chr6_3:75871510-75871529 | None:intergenic | 35.0% |
| AAGGATACTGCGCTTTATAT+GGG | - | chr6_3:75871544-75871563 | None:intergenic | 35.0% | |
| AAAGGATACTGCGCTTTATA+TGG | - | chr6_3:75871545-75871564 | None:intergenic | 35.0% | |
| GCAGTATCCTTTATTAGTGT+TGG | + | chr6_3:75871553-75871572 | Msa0959310:intron | 35.0% | |
| AAGGGCAATACTGTAAACAT+CGG | - | chr6_3:75871607-75871626 | None:intergenic | 35.0% | |
| AACAGACAAACTGTGTAACA+GGG | - | chr6_3:75871715-75871734 | None:intergenic | 35.0% | |
| AAACAGACAAACTGTGTAAC+AGG | - | chr6_3:75871716-75871735 | None:intergenic | 35.0% | |
| ! | GCTTTACACTTTTCATGTGT+TGG | + | chr6_3:75871909-75871928 | Msa0959310:intron | 35.0% |
| AAGGTATAACCTTCTGAATC+AGG | + | chr6_3:75872180-75872199 | Msa0959310:intron | 35.0% | |
| GCAGATGAAGATATAAAGCT+TGG | + | chr6_3:75872478-75872497 | Msa0959310:CDS | 35.0% | |
| GTAATTGAATATGTCGGAGA+AGG | + | chr6_3:75872508-75872527 | Msa0959310:CDS | 35.0% | |
| ATGATAAAACATGCGAACAG+AGG | + | chr6_3:75872635-75872654 | Msa0959310:CDS | 35.0% | |
| !! | CTTTGGAATATGAAAGATCG+TGG | + | chr6_3:75872658-75872677 | Msa0959310:CDS | 35.0% |
| TTGGAATATGAAAGATCGTG+GGG | + | chr6_3:75872660-75872679 | Msa0959310:CDS | 35.0% | |
| ATGCGAAATCAATCGAGATA+TGG | + | chr6_3:75872699-75872718 | Msa0959310:CDS | 35.0% | |
| GTGATAGATGCGACAAATAA+AGG | + | chr6_3:75872721-75872740 | Msa0959310:CDS | 35.0% | |
| ATTTCTGCATCTCAGTATTC+GGG | - | chr6_3:75872780-75872799 | None:intergenic | 35.0% | |
| CATTTCTGCATCTCAGTATT+CGG | - | chr6_3:75872781-75872800 | None:intergenic | 35.0% | |
| TGCAAGTCGTGATATAAAGA+AGG | + | chr6_3:75872972-75872991 | Msa0959310:intron | 35.0% | |
| GCAAGTCGTGATATAAAGAA+GGG | + | chr6_3:75872973-75872992 | Msa0959310:intron | 35.0% | |
| ! | GGTGGATTCTAAGTTTCTAA+CGG | + | chr6_3:75873380-75873399 | Msa0959310:intron | 35.0% |
| ! | CATAGCAGGTTTGTTCAATT+TGG | + | chr6_3:75873403-75873422 | Msa0959310:intron | 35.0% |
| ATATGCCACTAATTTAGGCT+TGG | - | chr6_3:75873491-75873510 | None:intergenic | 35.0% | |
| ACCTGATATGCCACTAATTT+AGG | - | chr6_3:75873496-75873515 | None:intergenic | 35.0% | |
| TTGTTCAGTATAATCGACGA+TGG | + | chr6_3:75873694-75873713 | Msa0959310:three_prime_UTR | 35.0% | |
| ACTCTGTTGGACAGTCTAAA+AGG | + | chr6_3:75870848-75870867 | Msa0959310:five_prime_UTR | 40.0% | |
| GACTTTCTTGCTTCCTTCAA+AGG | - | chr6_3:75871075-75871094 | None:intergenic | 40.0% | |
| !! | GAAGCAAGAAAGTCTTGTTG+TGG | + | chr6_3:75871081-75871100 | Msa0959310:five_prime_UTR | 40.0% |
| !! | TACTGTACTCTGGTTCTGAT+AGG | + | chr6_3:75871271-75871290 | Msa0959310:intron | 40.0% |
| ACGAAGCTGATGAACAATCT+TGG | + | chr6_3:75871462-75871481 | Msa0959310:CDS | 40.0% | |
| TCTGATTCTACTGCTGTATG+TGG | + | chr6_3:75871850-75871869 | Msa0959310:CDS | 40.0% | |
| ACTTAGTTACTTACCCACAG+TGG | - | chr6_3:75871885-75871904 | None:intergenic | 40.0% | |
| TGTGTGTGATTCAATGGGAA+TGG | + | chr6_3:75872013-75872032 | Msa0959310:intron | 40.0% | |
| GTGTGTGATTCAATGGGAAT+GGG | + | chr6_3:75872014-75872033 | Msa0959310:intron | 40.0% | |
| TGCTTGTAGACTGAGAAATG+TGG | + | chr6_3:75872442-75872461 | Msa0959310:intron | 40.0% | |
| TAGACTGAGAAATGTGGATC+TGG | + | chr6_3:75872448-75872467 | Msa0959310:intron | 40.0% | |
| ! | GAAATGTGGATCTGGAATTG+TGG | + | chr6_3:75872456-75872475 | Msa0959310:CDS | 40.0% |
| TCATCGATAACTGCAGAAAG+AGG | - | chr6_3:75872619-75872638 | None:intergenic | 40.0% | |
| CGAATACTGAGATGCAGAAA+TGG | + | chr6_3:75872779-75872798 | Msa0959310:CDS | 40.0% | |
| !! | ACACTCTTTAAGGCCTTGTT+TGG | + | chr6_3:75873041-75873060 | Msa0959310:intron | 40.0% |
| !! | CACTCTTTAAGGCCTTGTTT+GGG | + | chr6_3:75873042-75873061 | Msa0959310:intron | 40.0% |
| AGTTCAACTTATGGCCTGTT+TGG | - | chr6_3:75873302-75873321 | None:intergenic | 40.0% | |
| GTATGACTCTGTTGTAGTGA+TGG | + | chr6_3:75873359-75873378 | Msa0959310:intron | 40.0% | |
| TAAGTTTCTAACGGCATAGC+AGG | + | chr6_3:75873389-75873408 | Msa0959310:intron | 40.0% | |
| ACCTACCAAGCCTAAATTAG+TGG | + | chr6_3:75873483-75873502 | Msa0959310:CDS | 40.0% | |
| GCCTAAATTAGTGGCATATC+AGG | + | chr6_3:75873492-75873511 | Msa0959310:CDS | 40.0% | |
| TCAGTATAATCGACGATGGT+TGG | + | chr6_3:75873698-75873717 | Msa0959310:three_prime_UTR | 40.0% | |
| TAGACTGTCCAACAGAGTCA+GGG | - | chr6_3:75870846-75870865 | None:intergenic | 45.0% | |
| TTAGACTGTCCAACAGAGTC+AGG | - | chr6_3:75870847-75870866 | None:intergenic | 45.0% | |
| CCTAACAGCGGAAAGATGTT+CGG | - | chr6_3:75870882-75870901 | None:intergenic | 45.0% | |
| GGCAAGAGAAAGAGTGATGA+TGG | + | chr6_3:75871805-75871824 | Msa0959310:CDS | 45.0% | |
| !! | CTAGACAGAAGCATCCTACA+GGG | - | chr6_3:75872078-75872097 | None:intergenic | 45.0% |
| CTTCTGTCTAGCTGTTCTTC+AGG | + | chr6_3:75872087-75872106 | Msa0959310:CDS | 45.0% | |
| TGTTCTTCAGGCTGCAAATG+TGG | + | chr6_3:75872099-75872118 | Msa0959310:CDS | 45.0% | |
| GTTCTTCAGGCTGCAAATGT+GGG | + | chr6_3:75872100-75872119 | Msa0959310:CDS | 45.0% | |
| ATATGTCGGAGAAGGTGATG+TGG | + | chr6_3:75872516-75872535 | Msa0959310:intron | 45.0% | |
| AAACATGCGAACAGAGGCTT+TGG | + | chr6_3:75872641-75872660 | Msa0959310:CDS | 45.0% | |
| TGACTCTGTTGTAGTGATGG+TGG | + | chr6_3:75873362-75873381 | Msa0959310:intron | 45.0% | |
| TACATTGAACAGCACCACAG+TGG | - | chr6_3:75873444-75873463 | None:intergenic | 45.0% | |
| !! | ACTGTGGTGCTGTTCAATGT+AGG | + | chr6_3:75873443-75873462 | Msa0959310:CDS | 45.0% |
| TGTTCAATGTAGGCGTAAGC+TGG | + | chr6_3:75873453-75873472 | Msa0959310:CDS | 45.0% | |
| GTTCAATGTAGGCGTAAGCT+GGG | + | chr6_3:75873454-75873473 | Msa0959310:CDS | 45.0% | |
| ! | GCCACTAATTTAGGCTTGGT+AGG | - | chr6_3:75873487-75873506 | None:intergenic | 45.0% |
| ! | GTGAGCTAGTGCTTTTGAAC+AGG | + | chr6_3:75873602-75873621 | Msa0959310:three_prime_UTR | 45.0% |
| CTGTATCACCCTGACTCTGT+TGG | + | chr6_3:75870835-75870854 | Msa0959310:five_prime_UTR | 50.0% | |
| CCGAACATCTTTCCGCTGTT+AGG | + | chr6_3:75870879-75870898 | Msa0959310:five_prime_UTR | 50.0% | |
| TGTGGTAGAGATTGCCACTG+TGG | + | chr6_3:75871868-75871887 | Msa0959310:CDS | 50.0% | |
| GTGGTAGAGATTGCCACTGT+GGG | + | chr6_3:75871869-75871888 | Msa0959310:CDS | 50.0% | |
| CTTATGCTCACTGTCCCTGT+AGG | + | chr6_3:75872061-75872080 | Msa0959310:intron | 50.0% | |
| !! | GCTAGACAGAAGCATCCTAC+AGG | - | chr6_3:75872079-75872098 | None:intergenic | 50.0% |
| CAGTATTCGGGCAGCAACTA+TGG | - | chr6_3:75872768-75872787 | None:intergenic | 50.0% | |
| GCAGATCAAGATTGCCACTG+TGG | + | chr6_3:75873427-75873446 | Msa0959310:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 75870304 | 75873913 | 75870304 | ID=Msa0959310;Name=Msa0959310 |
| chr6_3 | mRNA | 75870304 | 75873913 | 75870304 | ID=Msa0959310-mRNA-1;Parent=Msa0959310;Name=Msa0959310-mRNA-1;_AED=0.13;_eAED=0.13;_QI=695|0.87|1|1|0.75|0.66|9|376|242 |
| chr6_3 | exon | 75870304 | 75870341 | 75870304 | ID=Msa0959310-mRNA-1:exon:13607;Parent=Msa0959310-mRNA-1 |
| chr6_3 | exon | 75870430 | 75870519 | 75870430 | ID=Msa0959310-mRNA-1:exon:13608;Parent=Msa0959310-mRNA-1 |
| chr6_3 | exon | 75870542 | 75871126 | 75870542 | ID=Msa0959310-mRNA-1:exon:13609;Parent=Msa0959310-mRNA-1 |
| chr6_3 | exon | 75871429 | 75871555 | 75871429 | ID=Msa0959310-mRNA-1:exon:13610;Parent=Msa0959310-mRNA-1 |
| chr6_3 | exon | 75871785 | 75871890 | 75871785 | ID=Msa0959310-mRNA-1:exon:13611;Parent=Msa0959310-mRNA-1 |
| chr6_3 | exon | 75872083 | 75872182 | 75872083 | ID=Msa0959310-mRNA-1:exon:13612;Parent=Msa0959310-mRNA-1 |
| chr6_3 | exon | 75872451 | 75872529 | 75872451 | ID=Msa0959310-mRNA-1:exon:13613;Parent=Msa0959310-mRNA-1 |
| chr6_3 | exon | 75872629 | 75872800 | 75872629 | ID=Msa0959310-mRNA-1:exon:13614;Parent=Msa0959310-mRNA-1 |
| chr6_3 | exon | 75873411 | 75873913 | 75873411 | ID=Msa0959310-mRNA-1:exon:13615;Parent=Msa0959310-mRNA-1 |
| chr6_3 | five_prime_UTR | 75870304 | 75870341 | 75870304 | ID=Msa0959310-mRNA-1:five_prime_utr;Parent=Msa0959310-mRNA-1 |
| chr6_3 | five_prime_UTR | 75870430 | 75870519 | 75870430 | ID=Msa0959310-mRNA-1:five_prime_utr;Parent=Msa0959310-mRNA-1 |
| chr6_3 | five_prime_UTR | 75870542 | 75871108 | 75870542 | ID=Msa0959310-mRNA-1:five_prime_utr;Parent=Msa0959310-mRNA-1 |
| chr6_3 | CDS | 75871109 | 75871126 | 75871109 | ID=Msa0959310-mRNA-1:cds;Parent=Msa0959310-mRNA-1 |
| chr6_3 | CDS | 75871429 | 75871555 | 75871429 | ID=Msa0959310-mRNA-1:cds;Parent=Msa0959310-mRNA-1 |
| chr6_3 | CDS | 75871785 | 75871890 | 75871785 | ID=Msa0959310-mRNA-1:cds;Parent=Msa0959310-mRNA-1 |
| chr6_3 | CDS | 75872083 | 75872182 | 75872083 | ID=Msa0959310-mRNA-1:cds;Parent=Msa0959310-mRNA-1 |
| chr6_3 | CDS | 75872451 | 75872529 | 75872451 | ID=Msa0959310-mRNA-1:cds;Parent=Msa0959310-mRNA-1 |
| chr6_3 | CDS | 75872629 | 75872800 | 75872629 | ID=Msa0959310-mRNA-1:cds;Parent=Msa0959310-mRNA-1 |
| chr6_3 | CDS | 75873411 | 75873537 | 75873411 | ID=Msa0959310-mRNA-1:cds;Parent=Msa0959310-mRNA-1 |
| chr6_3 | three_prime_UTR | 75873538 | 75873913 | 75873538 | ID=Msa0959310-mRNA-1:three_prime_utr;Parent=Msa0959310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
