Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1168770 | XP_003625636.2 | 99.545 | 220 | 1 | 0 | 1 | 220 | 1 | 220 | 1.26e-161 | 455 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1168770 | sp|Q8L8B8|LOG3_ARATH | 87.019 | 208 | 27 | 0 | 1 | 208 | 1 | 208 | 2.40e-135 | 381 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1168770 | A0A072TU87 | 99.545 | 220 | 1 | 0 | 1 | 220 | 1 | 220 | 6.01e-162 | 455 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003370 | Msa1168770 | 0.802509 | 5.424554e-49 | -8.615850e-47 |
| Msa0035090 | Msa1168770 | 0.813284 | 2.767079e-51 | -8.615850e-47 |
| Msa0050400 | Msa1168770 | 0.801679 | 8.036755e-49 | -8.615850e-47 |
| Msa0059960 | Msa1168770 | -0.809299 | 2.026942e-50 | -8.615850e-47 |
| Msa0075850 | Msa1168770 | 0.808844 | 2.535886e-50 | -8.615850e-47 |
| Msa0083570 | Msa1168770 | 0.804633 | 1.966719e-49 | -8.615850e-47 |
| Msa0089410 | Msa1168770 | 0.802740 | 4.859946e-49 | -8.615850e-47 |
| Msa0094060 | Msa1168770 | 0.843136 | 1.686670e-58 | -8.615850e-47 |
| Msa0094420 | Msa1168770 | 0.803441 | 3.480678e-49 | -8.615850e-47 |
| Msa0099830 | Msa1168770 | 0.809186 | 2.143229e-50 | -8.615850e-47 |
| Msa0619060 | Msa1168770 | 0.804169 | 2.457246e-49 | -8.615850e-47 |
| Msa0619480 | Msa1168770 | 0.830573 | 2.722050e-55 | -8.615850e-47 |
| Msa0620270 | Msa1168770 | 0.817629 | 2.986095e-52 | -8.615850e-47 |
| Msa0622390 | Msa1168770 | 0.803166 | 3.968523e-49 | -8.615850e-47 |
| Msa0624890 | Msa1168770 | 0.832422 | 9.541280e-56 | -8.615850e-47 |
| Msa0626890 | Msa1168770 | 0.812710 | 3.697722e-51 | -8.615850e-47 |
| Msa0640880 | Msa1168770 | 0.835104 | 2.037678e-56 | -8.615850e-47 |
| Msa0641970 | Msa1168770 | 0.815132 | 1.081377e-51 | -8.615850e-47 |
| Msa0659640 | Msa1168770 | 0.845841 | 3.157366e-59 | -8.615850e-47 |
| Msa0679270 | Msa1168770 | 0.815434 | 9.264941e-52 | -8.615850e-47 |
| Msa0681040 | Msa1168770 | 0.841297 | 5.174298e-58 | -8.615850e-47 |
| Msa0698880 | Msa1168770 | 0.810741 | 9.915093e-51 | -8.615850e-47 |
| Msa0704750 | Msa1168770 | 0.820598 | 6.302552e-53 | -8.615850e-47 |
| Msa0718900 | Msa1168770 | 0.811214 | 7.828323e-51 | -8.615850e-47 |
| Msa0736330 | Msa1168770 | 0.845629 | 3.604810e-59 | -8.615850e-47 |
| Msa0746640 | Msa1168770 | 0.803677 | 3.110015e-49 | -8.615850e-47 |
| Msa0778060 | Msa1168770 | 0.838782 | 2.343808e-57 | -8.615850e-47 |
| Msa0792860 | Msa1168770 | 0.808136 | 3.591323e-50 | -8.615850e-47 |
| Msa0821490 | Msa1168770 | 0.840740 | 7.246141e-58 | -8.615850e-47 |
| Msa0123940 | Msa1168770 | 0.833617 | 4.813010e-56 | -8.615850e-47 |
| Msa0130120 | Msa1168770 | 0.806843 | 6.757069e-50 | -8.615850e-47 |
| Msa0175900 | Msa1168770 | 0.820803 | 5.653746e-53 | -8.615850e-47 |
| Msa0207220 | Msa1168770 | 0.831060 | 2.067133e-55 | -8.615850e-47 |
| Msa0207530 | Msa1168770 | 0.812337 | 4.461029e-51 | -8.615850e-47 |
| Msa0224700 | Msa1168770 | 0.856898 | 2.356072e-62 | -8.615850e-47 |
| Msa0227490 | Msa1168770 | 0.804478 | 2.119264e-49 | -8.615850e-47 |
| Msa0230400 | Msa1168770 | 0.804189 | 2.433928e-49 | -8.615850e-47 |
| Msa0370510 | Msa1168770 | 0.820375 | 7.090708e-53 | -8.615850e-47 |
| Msa0377460 | Msa1168770 | 0.823554 | 1.301058e-53 | -8.615850e-47 |
| Msa0392450 | Msa1168770 | 0.801415 | 9.101128e-49 | -8.615850e-47 |
| Msa0418480 | Msa1168770 | 0.801338 | 9.440410e-49 | -8.615850e-47 |
| Msa0421790 | Msa1168770 | 0.828898 | 6.957415e-55 | -8.615850e-47 |
| Msa0426860 | Msa1168770 | 0.810278 | 1.247869e-50 | -8.615850e-47 |
| Msa0426890 | Msa1168770 | 0.812136 | 4.934244e-51 | -8.615850e-47 |
| Msa0439780 | Msa1168770 | 0.822166 | 2.739162e-53 | -8.615850e-47 |
| Msa0450860 | Msa1168770 | 0.801118 | 1.046924e-48 | -8.615850e-47 |
| Msa0465860 | Msa1168770 | 0.800019 | 1.754048e-48 | -8.615850e-47 |
| Msa0467890 | Msa1168770 | 0.824145 | 9.458778e-54 | -8.615850e-47 |
| Msa0467970 | Msa1168770 | 0.827335 | 1.655622e-54 | -8.615850e-47 |
| Msa0473320 | Msa1168770 | 0.803176 | 3.949723e-49 | -8.615850e-47 |
| Msa1030280 | Msa1168770 | 0.803574 | 3.267468e-49 | -8.615850e-47 |
| Msa1041620 | Msa1168770 | 0.847308 | 1.255257e-59 | -8.615850e-47 |
| Msa1069600 | Msa1168770 | 0.922633 | 7.628997e-89 | -8.615850e-47 |
| Msa1079300 | Msa1168770 | 0.903245 | 4.233553e-79 | -8.615850e-47 |
| Msa0253410 | Msa1168770 | 0.865649 | 5.066589e-65 | -8.615850e-47 |
| Msa0263430 | Msa1168770 | 0.805473 | 1.312473e-49 | -8.615850e-47 |
| Msa0263470 | Msa1168770 | 0.821121 | 4.778330e-53 | -8.615850e-47 |
| Msa0265780 | Msa1168770 | 0.843001 | 1.832077e-58 | -8.615850e-47 |
| Msa0273710 | Msa1168770 | 0.809928 | 1.485002e-50 | -8.615850e-47 |
| Msa0274780 | Msa1168770 | 0.803242 | 3.828154e-49 | -8.615850e-47 |
| Msa0288270 | Msa1168770 | 0.829806 | 4.189179e-55 | -8.615850e-47 |
| Msa0288280 | Msa1168770 | 0.827021 | 1.968517e-54 | -8.615850e-47 |
| Msa0295520 | Msa1168770 | 0.823481 | 1.353427e-53 | -8.615850e-47 |
| Msa0301800 | Msa1168770 | 0.809194 | 2.134289e-50 | -8.615850e-47 |
| Msa0303780 | Msa1168770 | 0.865854 | 4.366258e-65 | -8.615850e-47 |
| Msa0304870 | Msa1168770 | 0.802666 | 5.034646e-49 | -8.615850e-47 |
| Msa0307490 | Msa1168770 | 0.822943 | 1.806924e-53 | -8.615850e-47 |
| Msa0331780 | Msa1168770 | 0.819627 | 1.051841e-52 | -8.615850e-47 |
| Msa0338610 | Msa1168770 | 0.801951 | 7.067625e-49 | -8.615850e-47 |
| Msa0341260 | Msa1168770 | 0.804758 | 1.852304e-49 | -8.615850e-47 |
| Msa0344070 | Msa1168770 | 0.812305 | 4.531700e-51 | -8.615850e-47 |
| Msa0358230 | Msa1168770 | 0.812420 | 4.278162e-51 | -8.615850e-47 |
| Msa1125150 | Msa1168770 | 0.801601 | 8.336220e-49 | -8.615850e-47 |
| Msa1166520 | Msa1168770 | 0.855878 | 4.692963e-62 | -8.615850e-47 |
| Msa1168770 | Msa1168840 | 0.976052 | 4.295876e-141 | -8.615850e-47 |
| Msa1168770 | Msa1173020 | 0.809942 | 1.474629e-50 | -8.615850e-47 |
| Msa1168770 | Msa1173410 | 0.810256 | 1.261764e-50 | -8.615850e-47 |
| Msa1168770 | Msa1178470 | 0.835363 | 1.752854e-56 | -8.615850e-47 |
| Msa1168770 | Msa1195860 | 0.811058 | 8.463119e-51 | -8.615850e-47 |
| Msa1168770 | Msa1208510 | 0.842556 | 2.405742e-58 | -8.615850e-47 |
| Msa1168770 | Msa1209900 | 0.818069 | 2.375724e-52 | -8.615850e-47 |
| Msa1168770 | Msa1211100 | 0.800623 | 1.321373e-48 | -8.615850e-47 |
| Msa1168770 | Msa1211120 | 0.807149 | 5.821102e-50 | -8.615850e-47 |
| Msa1168770 | Msa1213170 | 0.826688 | 2.364713e-54 | -8.615850e-47 |
| Msa1168770 | Msa1214870 | 0.801049 | 1.081579e-48 | -8.615850e-47 |
| Msa1168770 | Msa1218720 | 0.802022 | 6.831940e-49 | -8.615850e-47 |
| Msa1168770 | Msa1232860 | 0.851808 | 6.973500e-61 | -8.615850e-47 |
| Msa1168770 | Msa1245300 | 0.805898 | 1.068773e-49 | -8.615850e-47 |
| Msa1168770 | Msa1254770 | 0.814149 | 1.784573e-51 | -8.615850e-47 |
| Msa1168770 | Msa1254800 | 0.817881 | 2.620499e-52 | -8.615850e-47 |
| Msa1168770 | Msa1261340 | 0.811472 | 6.881329e-51 | -8.615850e-47 |
| Msa1168770 | Msa1261360 | 0.800130 | 1.664815e-48 | -8.615850e-47 |
| Msa1168770 | Msa1261370 | 0.806702 | 7.234807e-50 | -8.615850e-47 |
| Msa1168770 | Msa1264230 | 0.801706 | 7.935212e-49 | -8.615850e-47 |
| Msa1168770 | Msa1275290 | 0.868791 | 5.019288e-66 | -8.615850e-47 |
| Msa1168770 | Msa1302920 | 0.821820 | 3.294583e-53 | -8.615850e-47 |
| Msa1168770 | Msa1313460 | 0.860075 | 2.659371e-63 | -8.615850e-47 |
| Msa1168770 | Msa1327820 | 0.802412 | 5.678620e-49 | -8.615850e-47 |
| Msa1168770 | Msa1328310 | 0.806660 | 7.385180e-50 | -8.615850e-47 |
| Msa1168770 | Msa1330240 | 0.829064 | 6.344343e-55 | -8.615850e-47 |
| Msa1168770 | Msa1343540 | 0.821152 | 4.700745e-53 | -8.615850e-47 |
| Msa1168770 | Msa1351560 | 0.816917 | 4.318668e-52 | -8.615850e-47 |
| Msa1168770 | Msa1352820 | 0.825790 | 3.869043e-54 | -8.615850e-47 |
| Msa1168770 | Msa1357760 | 0.815614 | 8.446384e-52 | -8.615850e-47 |
| Msa1168770 | Msa1367810 | 0.833132 | 6.356317e-56 | -8.615850e-47 |
| Msa1168770 | Msa1369860 | 0.838979 | 2.084345e-57 | -8.615850e-47 |
| Msa1168770 | Msa1373500 | 0.808216 | 3.454362e-50 | -8.615850e-47 |
| Msa1168770 | Msa1385940 | 0.800977 | 1.118862e-48 | -8.615850e-47 |
| Msa1168770 | Msa1426870 | 0.800559 | 1.361568e-48 | -8.615850e-47 |
| Msa1168770 | Msa1442300 | 0.817943 | 2.536841e-52 | -8.615850e-47 |
| Msa0487620 | Msa1168770 | 0.803964 | 2.711365e-49 | -8.615850e-47 |
| Msa0510230 | Msa1168770 | 0.822567 | 2.211309e-53 | -8.615850e-47 |
| Msa0514280 | Msa1168770 | 0.825786 | 3.877087e-54 | -8.615850e-47 |
| Msa0517400 | Msa1168770 | 0.823237 | 1.543409e-53 | -8.615850e-47 |
| Msa0542030 | Msa1168770 | 0.805495 | 1.298875e-49 | -8.615850e-47 |
| Msa0544780 | Msa1168770 | 0.829654 | 4.560643e-55 | -8.615850e-47 |
| Msa0545910 | Msa1168770 | 0.823976 | 1.036336e-53 | -8.615850e-47 |
| Msa0571070 | Msa1168770 | 0.823003 | 1.750272e-53 | -8.615850e-47 |
| Msa0577140 | Msa1168770 | 0.821593 | 3.717811e-53 | -8.615850e-47 |
| Msa0587060 | Msa1168770 | 0.814373 | 1.592115e-51 | -8.615850e-47 |
| Msa0600390 | Msa1168770 | 0.822512 | 2.277151e-53 | -8.615850e-47 |
| Msa0601710 | Msa1168770 | 0.840404 | 8.872816e-58 | -8.615850e-47 |
| Msa0851870 | Msa1168770 | 0.806381 | 8.455147e-50 | -8.615850e-47 |
| Msa0855490 | Msa1168770 | 0.862765 | 4.018817e-64 | -8.615850e-47 |
| Msa0880520 | Msa1168770 | 0.805748 | 1.148925e-49 | -8.615850e-47 |
| Msa0923910 | Msa1168770 | 0.800105 | 1.684815e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1168770 | MtrunA17_Chr7g0264181 | 99.545 | 220 | 1 | 0 | 1 | 220 | 1 | 220 | 1.16e-165 | 455 |
| Msa1168770 | MtrunA17_Chr1g0181131 | 94.444 | 216 | 12 | 0 | 5 | 220 | 4 | 219 | 6.55e-156 | 430 |
| Msa1168770 | MtrunA17_Chr2g0326841 | 85.854 | 205 | 29 | 0 | 4 | 208 | 3 | 207 | 4.37e-132 | 370 |
| Msa1168770 | MtrunA17_Chr4g0028871 | 89.119 | 193 | 21 | 0 | 13 | 205 | 12 | 204 | 6.92e-128 | 359 |
| Msa1168770 | MtrunA17_Chr3g0142491 | 77.143 | 210 | 48 | 0 | 11 | 220 | 12 | 221 | 3.15e-122 | 345 |
| Msa1168770 | MtrunA17_Chr1g0177391 | 73.206 | 209 | 54 | 1 | 11 | 219 | 6 | 212 | 2.20e-113 | 323 |
| Msa1168770 | MtrunA17_Chr1g0151201 | 67.157 | 204 | 65 | 1 | 12 | 213 | 7 | 210 | 9.84e-102 | 293 |
| Msa1168770 | MtrunA17_Chr1g0156401 | 65.179 | 112 | 18 | 1 | 41 | 131 | 1 | 112 | 1.10e-43 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1168770 | AT2G37210.1 | 87.019 | 208 | 27 | 0 | 1 | 208 | 1 | 208 | 2.44e-136 | 381 |
| Msa1168770 | AT3G53450.1 | 86.058 | 208 | 29 | 0 | 1 | 208 | 1 | 208 | 3.10e-134 | 376 |
| Msa1168770 | AT2G28305.1 | 85.238 | 210 | 30 | 1 | 11 | 220 | 5 | 213 | 1.63e-130 | 366 |
| Msa1168770 | AT2G37210.2 | 77.586 | 232 | 28 | 1 | 1 | 208 | 1 | 232 | 2.40e-130 | 367 |
| Msa1168770 | AT2G28305.3 | 90.503 | 179 | 17 | 0 | 11 | 189 | 5 | 183 | 8.04e-120 | 338 |
| Msa1168770 | AT5G06300.1 | 79.208 | 202 | 42 | 0 | 11 | 212 | 6 | 207 | 2.48e-119 | 338 |
| Msa1168770 | AT5G03270.1 | 83.871 | 186 | 30 | 0 | 11 | 196 | 16 | 201 | 3.61e-113 | 322 |
| Msa1168770 | AT4G35190.1 | 71.921 | 203 | 57 | 0 | 7 | 209 | 2 | 204 | 7.53e-110 | 315 |
| Msa1168770 | AT5G03270.2 | 83.978 | 181 | 29 | 0 | 11 | 191 | 16 | 196 | 2.06e-109 | 312 |
| Msa1168770 | AT2G35990.1 | 72.165 | 194 | 54 | 0 | 11 | 204 | 6 | 199 | 2.52e-108 | 310 |
| Msa1168770 | AT4G35190.2 | 73.575 | 193 | 49 | 1 | 7 | 199 | 2 | 192 | 8.88e-104 | 298 |
| Msa1168770 | AT5G11950.1 | 66.010 | 203 | 69 | 0 | 11 | 213 | 7 | 209 | 1.13e-101 | 293 |
| Msa1168770 | AT5G11950.2 | 66.010 | 203 | 69 | 0 | 11 | 213 | 7 | 209 | 1.13e-101 | 293 |
| Msa1168770 | AT5G11950.3 | 66.010 | 203 | 69 | 0 | 11 | 213 | 7 | 209 | 1.13e-101 | 293 |
| Msa1168770 | AT2G28305.2 | 90.909 | 132 | 12 | 0 | 11 | 142 | 5 | 136 | 4.40e-86 | 252 |
| Msa1168770 | AT2G35990.3 | 71.429 | 147 | 42 | 0 | 58 | 204 | 1 | 147 | 1.89e-78 | 233 |
| Msa1168770 | AT2G35990.2 | 71.429 | 147 | 42 | 0 | 58 | 204 | 1 | 147 | 1.89e-78 | 233 |
| Msa1168770 | AT5G11950.4 | 66.026 | 156 | 53 | 0 | 58 | 213 | 1 | 156 | 7.39e-75 | 224 |
| Msa1168770 | AT5G26140.2 | 52.318 | 151 | 50 | 1 | 85 | 213 | 6 | 156 | 2.30e-47 | 154 |
| Msa1168770 | AT5G26140.1 | 51.095 | 137 | 45 | 1 | 99 | 213 | 1 | 137 | 5.06e-40 | 134 |
| Msa1168770 | AT5G26140.3 | 54.717 | 106 | 48 | 0 | 108 | 213 | 17 | 122 | 8.82e-36 | 123 |
Find 66 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAACATTGATCTTGTTTA+TGG | 0.168735 | 7_4:+61587743 | Msa1168770:CDS |
| GTCATCGCAACAACGGAAAT+TGG | 0.246190 | 7_4:-61591051 | None:intergenic |
| TAATTTACATAAGAAATTAA+AGG | 0.265324 | 7_4:-61590786 | None:intergenic |
| GACCATATGATATAGAATTT+TGG | 0.265482 | 7_4:+61590706 | Msa1168770:three_prime_UTR |
| TTAACTTATGCAGGTGGATA+TGG | 0.277547 | 7_4:+61589795 | Msa1168770:intron |
| ACTAATCAACATTAAATAAT+AGG | 0.279626 | 7_4:-61590914 | None:intergenic |
| ATTTGTTAGTTGGAATAAAA+AGG | 0.292300 | 7_4:-61586953 | None:intergenic |
| CAATTCATTGCCAAGGTTCA+TGG | 0.335336 | 7_4:-61587074 | None:intergenic |
| GCTTTGTTGCTACTACTCTT+TGG | 0.335661 | 7_4:-61586827 | None:intergenic |
| ATAAGTAATTTAACTTTCAT+AGG | 0.351644 | 7_4:-61590825 | None:intergenic |
| ACAATTATGTGACGAGCATT+TGG | 0.366388 | 7_4:-61590061 | None:intergenic |
| ACTCACGCAATGGTGAAATA+AGG | 0.394030 | 7_4:+61586978 | Msa1168770:CDS |
| GATGGCGGTCGCCATGTCAT+TGG | 0.405743 | 7_4:+61587812 | Msa1168770:CDS |
| GTTGGATTAGTAAATGTTGA+TGG | 0.409542 | 7_4:+61589980 | Msa1168770:CDS |
| CTCCAAAATTCTATATCATA+TGG | 0.431525 | 7_4:-61590708 | None:intergenic |
| CTCTCGAGGCATGAGTGTCT+TGG | 0.437050 | 7_4:-61588043 | None:intergenic |
| ATGGCGGTCGCCATGTCATT+GGG | 0.438706 | 7_4:+61587813 | Msa1168770:CDS |
| ATTGACAAAGCTGTGGAAGA+AGG | 0.461566 | 7_4:+61590028 | Msa1168770:CDS |
| GCGTGAGTCCATTTGTTAGT+TGG | 0.464138 | 7_4:-61586963 | None:intergenic |
| TCTCGAGGCATGAGTGTCTT+GGG | 0.468747 | 7_4:-61588042 | None:intergenic |
| CATGAACCTTGGCAATGAAT+TGG | 0.469550 | 7_4:+61587075 | Msa1168770:CDS |
| TTCCATCTGCCAGCTCAACT+TGG | 0.470523 | 7_4:-61590604 | None:intergenic |
| TTGAGATGTCATAATCTTGA+GGG | 0.471297 | 7_4:-61590641 | None:intergenic |
| GTCATAACATGGGCTCAACT+TGG | 0.475221 | 7_4:+61589840 | Msa1168770:CDS |
| ATTGATCTTGTTTATGGAGG+AGG | 0.482065 | 7_4:+61587749 | Msa1168770:CDS |
| CAAGGTTCATGGCAGCATCT+TGG | 0.485744 | 7_4:-61587063 | None:intergenic |
| AAAAGAGTTAGTTAAGAAGT+TGG | 0.487121 | 7_4:+61590099 | Msa1168770:CDS |
| AAAGATGAGGATGACTCTTA+AGG | 0.487617 | 7_4:-61590956 | None:intergenic |
| AGGAGGAAGCATTGGTCTCA+TGG | 0.491447 | 7_4:+61587766 | Msa1168770:CDS |
| GTTTATGGAGGAGGAAGCAT+TGG | 0.504128 | 7_4:+61587758 | Msa1168770:CDS |
| GTTTCTCAAGCTGTTCATGA+TGG | 0.505960 | 7_4:+61587794 | Msa1168770:CDS |
| GTGTTGCTTCCAAGTTGAGC+TGG | 0.509075 | 7_4:+61590595 | Msa1168770:CDS |
| TGCTAAGTGCTAACCTGGTA+AGG | 0.510169 | 7_4:-61588502 | None:intergenic |
| AGAGTTAGTTAAGAAGTTGG+AGG | 0.516344 | 7_4:+61590102 | Msa1168770:CDS |
| TTGACAAAGCTGTGGAAGAA+GGG | 0.531943 | 7_4:+61590029 | Msa1168770:CDS |
| AACATTGATCTTGTTTATGG+AGG | 0.533518 | 7_4:+61587746 | Msa1168770:CDS |
| CAAGATGCTGCCATGAACCT+TGG | 0.535202 | 7_4:+61587064 | Msa1168770:CDS |
| CTCAAGATTATGACATCTCA+AGG | 0.546895 | 7_4:+61590643 | Msa1168770:CDS |
| GCATCAAAGGAAAGCTGAGA+TGG | 0.549979 | 7_4:+61588455 | Msa1168770:CDS |
| GGAGGAAGCATTGGTCTCAT+GGG | 0.550392 | 7_4:+61587767 | Msa1168770:CDS |
| TACATACCAATTCATTGCCA+AGG | 0.561261 | 7_4:-61587081 | None:intergenic |
| TTCCAAGTTGAGCTGGCAGA+TGG | 0.564883 | 7_4:+61590602 | Msa1168770:CDS |
| CAGCTAACTGGTGAAACAGT+AGG | 0.567165 | 7_4:+61588408 | Msa1168770:intron |
| CTGTTGCTGATATGCATCAA+AGG | 0.573128 | 7_4:+61588442 | Msa1168770:CDS |
| CTTGAGATGTCATAATCTTG+AGG | 0.576949 | 7_4:-61590642 | None:intergenic |
| TAACAAATGGACTCACGCAA+TGG | 0.580220 | 7_4:+61586968 | Msa1168770:exon |
| ACAGTGAAAGACAAAGATGA+AGG | 0.582119 | 7_4:-61586889 | None:intergenic |
| CTATGTTTACTTCACTTGCA+AGG | 0.592333 | 7_4:+61590676 | Msa1168770:three_prime_UTR |
| GAAGCAACACCCTCATGACA+TGG | 0.600653 | 7_4:-61590582 | None:intergenic |
| AACTTCTTGAAGTCATAACA+TGG | 0.604120 | 7_4:+61589829 | Msa1168770:CDS |
| CTTGATCAACACAAAAGATG+AGG | 0.611603 | 7_4:-61590969 | None:intergenic |
| TACTAGACAAATACCTCTCG+AGG | 0.614675 | 7_4:-61588057 | None:intergenic |
| ACTTGGAATTCATGACAAGC+CGG | 0.616968 | 7_4:+61589857 | Msa1168770:CDS |
| GGAGTATGTTCCATGTCATG+AGG | 0.617100 | 7_4:+61590572 | Msa1168770:intron |
| GTTCATGGCAGCATCTTGGT+AGG | 0.620771 | 7_4:-61587059 | None:intergenic |
| TCTCAAGCTGTTCATGATGG+CGG | 0.622957 | 7_4:+61587797 | Msa1168770:CDS |
| TGAAACAGTAGGAGAAGTGA+AGG | 0.624185 | 7_4:+61588419 | Msa1168770:CDS |
| CAAGACACTCATGCCTCGAG+AGG | 0.636692 | 7_4:+61588044 | Msa1168770:CDS |
| GTCATTCATTGACAAAGCTG+TGG | 0.639783 | 7_4:+61590021 | Msa1168770:CDS |
| GAGTATGTTCCATGTCATGA+GGG | 0.646303 | 7_4:+61590573 | Msa1168770:CDS |
| TGTATTTGTCATCGCAACAA+CGG | 0.652612 | 7_4:-61591058 | None:intergenic |
| TAAAATCAAAGTTTATAACA+AGG | 0.654833 | 7_4:-61590853 | None:intergenic |
| GTGTTATATACCCAATGACA+TGG | 0.655296 | 7_4:-61587823 | None:intergenic |
| AGGTGGATATGGAACTCTAG+AGG | 0.671132 | 7_4:+61589806 | Msa1168770:intron |
| TTTGTCAATGAATGACAACA+AGG | 0.686987 | 7_4:-61590014 | None:intergenic |
| ACTTCTTGAAGTCATAACAT+GGG | 0.690032 | 7_4:+61589830 | Msa1168770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAATATGAAAATGT+CGG | - | chr7_4:61588625-61588644 | None:intergenic | 10.0% |
| !! | TTTAAAAATGAAAGATAAAA+AGG | - | chr7_4:61588766-61588785 | None:intergenic | 10.0% |
| !!! | TCCAATATTTTATATTTTAA+GGG | - | chr7_4:61589121-61589140 | None:intergenic | 10.0% |
| !!! | AATATTATTTTTTTTGACAA+TGG | - | chr7_4:61590215-61590234 | None:intergenic | 10.0% |
| !! | TTAATTAATAAGTATACAAT+TGG | - | chr7_4:61590496-61590515 | None:intergenic | 10.0% |
| !! | TAATTTACATAAGAAATTAA+AGG | - | chr7_4:61590789-61590808 | None:intergenic | 10.0% |
| !!! | TTAATTTTTTGTTGTTTACT+TGG | + | chr7_4:61588636-61588655 | Msa1168770:intron | 15.0% |
| !!! | TTTTAAAACAACATGATTTA+AGG | - | chr7_4:61588922-61588941 | None:intergenic | 15.0% |
| !!! | ATTTTATATTTTAAGGGATA+AGG | - | chr7_4:61589115-61589134 | None:intergenic | 15.0% |
| !! | TCCCTTAAAATATAAAATAT+TGG | + | chr7_4:61589117-61589136 | Msa1168770:intron | 15.0% |
| !!! | GTCCAATATTTTATATTTTA+AGG | - | chr7_4:61589122-61589141 | None:intergenic | 15.0% |
| !! | ATACTCAAAATAAATTACTT+AGG | - | chr7_4:61589395-61589414 | None:intergenic | 15.0% |
| !! | TTATCATTTATGAATTAATC+TGG | + | chr7_4:61589936-61589955 | Msa1168770:intron | 15.0% |
| !!! | AAGATTTGAAATTAATTTAC+AGG | + | chr7_4:61590551-61590570 | Msa1168770:intron | 15.0% |
| !!! | ATAAGTAATTTAACTTTCAT+AGG | - | chr7_4:61590828-61590847 | None:intergenic | 15.0% |
| !! | TAAAATCAAAGTTTATAACA+AGG | - | chr7_4:61590856-61590875 | None:intergenic | 15.0% |
| !! | ACTAATCAACATTAAATAAT+AGG | - | chr7_4:61590917-61590936 | None:intergenic | 15.0% |
| !!! | TAGTAGTTTTTATATTTAAC+TGG | + | chr7_4:61590933-61590952 | Msa1168770:three_prime_UTR | 15.0% |
| !!! | AAGATTTTAAATTGTTATCA+TGG | + | chr7_4:61590989-61591008 | Msa1168770:three_prime_UTR | 15.0% |
| !! | TAATGAAGAAAAAGAAGAAA+AGG | - | chr7_4:61586868-61586887 | None:intergenic | 20.0% |
| !! | AATAAAAAGGTAACTAACTA+GGG | - | chr7_4:61586943-61586962 | None:intergenic | 20.0% |
| !!! | ATTTGTTAGTTGGAATAAAA+AGG | - | chr7_4:61586956-61586975 | None:intergenic | 20.0% |
| !!! | TTTTTATTCCAACTAACAAA+TGG | + | chr7_4:61586955-61586974 | Msa1168770:exon | 20.0% |
| !!! | ACACTTTGATTAATGTTTTT+GGG | - | chr7_4:61587374-61587393 | None:intergenic | 20.0% |
| !!! | AACACTTTGATTAATGTTTT+TGG | - | chr7_4:61587375-61587394 | None:intergenic | 20.0% |
| !!! | TCCATTTTTGTTTCATATTA+AGG | + | chr7_4:61587411-61587430 | Msa1168770:intron | 20.0% |
| !! | ACCTTAATATGAAACAAAAA+TGG | - | chr7_4:61587415-61587434 | None:intergenic | 20.0% |
| !! | TGTTAATTAATGAGTAAAAG+AGG | - | chr7_4:61587982-61588001 | None:intergenic | 20.0% |
| !!! | GTCAACTTTTTCTTATAATA+AGG | - | chr7_4:61588094-61588113 | None:intergenic | 20.0% |
| !!! | TAAGAAAAAGTTGACTTTTT+AGG | + | chr7_4:61588099-61588118 | Msa1168770:intron | 20.0% |
| !!! | TAAGAAACAATTGACTTTTT+TGG | - | chr7_4:61588186-61588205 | None:intergenic | 20.0% |
| !!! | GTCAATTGTTTCTTATAATA+AGG | + | chr7_4:61588191-61588210 | Msa1168770:intron | 20.0% |
| !! | TTTAATAACAGAAGGTAAAA+GGG | - | chr7_4:61588240-61588259 | None:intergenic | 20.0% |
| !!! | AAAAATGTTGTTTATGTCTT+TGG | + | chr7_4:61588370-61588389 | Msa1168770:intron | 20.0% |
| !!! | GAAACAATTGTTTTTTTCAA+AGG | - | chr7_4:61588601-61588620 | None:intergenic | 20.0% |
| !!! | TTGTTTTTGTTGATTTGATT+TGG | + | chr7_4:61588802-61588821 | Msa1168770:intron | 20.0% |
| !! | TCCAATGTTTATGATTAATA+AGG | + | chr7_4:61589033-61589052 | Msa1168770:intron | 20.0% |
| !! | TCCTTATTAATCATAAACAT+TGG | - | chr7_4:61589037-61589056 | None:intergenic | 20.0% |
| !! | TTATATACAAATCATTCCTT+GGG | - | chr7_4:61589504-61589523 | None:intergenic | 20.0% |
| !! | TTTATATACAAATCATTCCT+TGG | - | chr7_4:61589505-61589524 | None:intergenic | 20.0% |
| !! | TACAATTCAGATTATAATCA+TGG | + | chr7_4:61589733-61589752 | Msa1168770:intron | 20.0% |
| ! | GAATAAAAAGGTAACTAACT+AGG | - | chr7_4:61586944-61586963 | None:intergenic | 25.0% |
| !! | AAAAGAATTTGTGTTTTCTG+TGG | + | chr7_4:61587013-61587032 | Msa1168770:CDS | 25.0% |
| ! | AACTCACTTATTGAAAAATG+TGG | - | chr7_4:61587175-61587194 | None:intergenic | 25.0% |
| !! | TTTCAATAAGTGAGTTGAAA+TGG | + | chr7_4:61587179-61587198 | Msa1168770:intron | 25.0% |
| !! | AGTGAATTTCAGTTTTTGTA+AGG | + | chr7_4:61587285-61587304 | Msa1168770:intron | 25.0% |
| ! | AAGGTTATATACTCTGTATT+TGG | + | chr7_4:61587304-61587323 | Msa1168770:intron | 25.0% |
| ! | TTTGGGCTTAATGTATATAA+TGG | - | chr7_4:61587357-61587376 | None:intergenic | 25.0% |
| !! | TTTTCTTTTCTTTCATCACA+TGG | + | chr7_4:61587602-61587621 | Msa1168770:intron | 25.0% |
| !! | TTTCTTTTCTTTCATCACAT+GGG | + | chr7_4:61587603-61587622 | Msa1168770:intron | 25.0% |
| ! | GAAACAAGAAAACCAAATAA+CGG | - | chr7_4:61587675-61587694 | None:intergenic | 25.0% |
| ! | AGAGAACAAAAATTAACACT+TGG | + | chr7_4:61587924-61587943 | Msa1168770:intron | 25.0% |
| !! | CTTTTTCTTATAATAAGGAC+CGG | - | chr7_4:61588089-61588108 | None:intergenic | 25.0% |
| !! | TTGTTTCTTATAATAAGGAC+CGG | + | chr7_4:61588196-61588215 | Msa1168770:intron | 25.0% |
| ! | TTAATAACAGAAGGTAAAAG+GGG | - | chr7_4:61588239-61588258 | None:intergenic | 25.0% |
| ! | CTTTAATAACAGAAGGTAAA+AGG | - | chr7_4:61588241-61588260 | None:intergenic | 25.0% |
| ! | TAGTACACTTTAATAACAGA+AGG | - | chr7_4:61588248-61588267 | None:intergenic | 25.0% |
| ! | TCTAAACATAAGAGAAAATC+AGG | - | chr7_4:61588341-61588360 | None:intergenic | 25.0% |
| ! | TCAAAGTTATTCATTACTTG+TGG | - | chr7_4:61588837-61588856 | None:intergenic | 25.0% |
| ! | TAATTCGTAAACAACTTTCA+TGG | + | chr7_4:61588995-61589014 | Msa1168770:intron | 25.0% |
| !!! | ATTATCAAGTAAGCTTTGAA+GGG | - | chr7_4:61589067-61589086 | None:intergenic | 25.0% |
| !!! | ATATTTTAAGGGATAAGGTA+AGG | - | chr7_4:61589110-61589129 | None:intergenic | 25.0% |
| !! | AACAAAAGTAGTGGAAAAAA+TGG | - | chr7_4:61589197-61589216 | None:intergenic | 25.0% |
| ! | ACTATACTAACTAAATACCA+TGG | + | chr7_4:61589588-61589607 | Msa1168770:intron | 25.0% |
| ! | TATGATATTGTAGAGAATTG+CGG | + | chr7_4:61589641-61589660 | Msa1168770:intron | 25.0% |
| ! | TTGTAACATCAATGTTTGTT+AGG | - | chr7_4:61589718-61589737 | None:intergenic | 25.0% |
| ! | ATTCAGATTATAATCATGGA+TGG | + | chr7_4:61589737-61589756 | Msa1168770:intron | 25.0% |
| !! | TTTTCTGAATTAACTTATGC+AGG | + | chr7_4:61589786-61589805 | Msa1168770:intron | 25.0% |
| ! | AGATATAGATTCCTCAAAAT+TGG | - | chr7_4:61589898-61589917 | None:intergenic | 25.0% |
| ! | GCTTATAATTACAAACTTGT+AGG | + | chr7_4:61589958-61589977 | Msa1168770:intron | 25.0% |
| ! | ATAATTACAAACTTGTAGGT+TGG | + | chr7_4:61589962-61589981 | Msa1168770:intron | 25.0% |
| ! | AAAAGAGTTAGTTAAGAAGT+TGG | + | chr7_4:61590099-61590118 | Msa1168770:CDS | 25.0% |
| !! | TACCTATAGTTTTCTTAGTT+AGG | - | chr7_4:61590140-61590159 | None:intergenic | 25.0% |
| !! | GACCATATGATATAGAATTT+TGG | + | chr7_4:61590706-61590725 | Msa1168770:three_prime_UTR | 25.0% |
| ! | CTCCAAAATTCTATATCATA+TGG | - | chr7_4:61590711-61590730 | None:intergenic | 25.0% |
| !! | CATATGATATAGAATTTTGG+AGG | + | chr7_4:61590709-61590728 | Msa1168770:three_prime_UTR | 25.0% |
| ! | TTTTAGTCCGTACAAATGTT+TGG | - | chr7_4:61587461-61587480 | None:intergenic | 30.0% |
| !!! | TGATGTTGTTTGTTTTGTGA+AGG | + | chr7_4:61587715-61587734 | Msa1168770:intron | 30.0% |
| !!! | TTTGTTTTGTGAAGGTTTCA+AGG | + | chr7_4:61587723-61587742 | Msa1168770:intron | 30.0% |
| ! | AGGAACATTGATCTTGTTTA+TGG | + | chr7_4:61587743-61587762 | Msa1168770:CDS | 30.0% |
| ! | AACATTGATCTTGTTTATGG+AGG | + | chr7_4:61587746-61587765 | Msa1168770:CDS | 30.0% |
| TCTCTCAAAGTTGTACTATT+TGG | + | chr7_4:61587887-61587906 | Msa1168770:intron | 30.0% | |
| CTCTCAAAGTTGTACTATTT+GGG | + | chr7_4:61587888-61587907 | Msa1168770:intron | 30.0% | |
| AAAAGAGGTTAACAAAAGCT+TGG | - | chr7_4:61587967-61587986 | None:intergenic | 30.0% | |
| AGGAATCAAACAATGAGATA+TGG | - | chr7_4:61588581-61588600 | None:intergenic | 30.0% | |
| ATGAATAACTTTGACTAGTG+TGG | + | chr7_4:61588843-61588862 | Msa1168770:intron | 30.0% | |
| ! | CATTATCAAGTAAGCTTTGA+AGG | - | chr7_4:61589068-61589087 | None:intergenic | 30.0% |
| !! | ACTTGCTTCATTTGATAATG+AGG | + | chr7_4:61589241-61589260 | Msa1168770:intron | 30.0% |
| !! | CTTGCTTCATTTGATAATGA+GGG | + | chr7_4:61589242-61589261 | Msa1168770:intron | 30.0% |
| AATGAGGGAAAGTAAAGAAA+AGG | + | chr7_4:61589257-61589276 | Msa1168770:intron | 30.0% | |
| CAGTAGAAAGGTTATTGAAA+AGG | - | chr7_4:61589336-61589355 | None:intergenic | 30.0% | |
| ! | AGTTTTCAATCACTCTTTCT+TGG | + | chr7_4:61589456-61589475 | Msa1168770:intron | 30.0% |
| ! | GTTTTCAATCACTCTTTCTT+GGG | + | chr7_4:61589457-61589476 | Msa1168770:intron | 30.0% |
| CCACGATTTAAATAAATCCA+TGG | - | chr7_4:61589608-61589627 | None:intergenic | 30.0% | |
| CCATGGATTTATTTAAATCG+TGG | + | chr7_4:61589605-61589624 | Msa1168770:intron | 30.0% | |
| AACTTCTTGAAGTCATAACA+TGG | + | chr7_4:61589829-61589848 | Msa1168770:CDS | 30.0% | |
| ACTTCTTGAAGTCATAACAT+GGG | + | chr7_4:61589830-61589849 | Msa1168770:CDS | 30.0% | |
| TTGGACATGTCAATTATTAC+CGG | - | chr7_4:61589879-61589898 | None:intergenic | 30.0% | |
| ! | AATTGACATGTCCAATTTTG+AGG | + | chr7_4:61589884-61589903 | Msa1168770:intron | 30.0% |
| !! | GTTGGATTAGTAAATGTTGA+TGG | + | chr7_4:61589980-61589999 | Msa1168770:CDS | 30.0% |
| TTTGTCAATGAATGACAACA+AGG | - | chr7_4:61590017-61590036 | None:intergenic | 30.0% | |
| ! | TTAACTAACTCTTTTGCAGT+TGG | - | chr7_4:61590094-61590113 | None:intergenic | 30.0% |
| GTCCTAACTAAGAAAACTAT+AGG | + | chr7_4:61590135-61590154 | Msa1168770:intron | 30.0% | |
| TTGGATAAACTAGAGGATAT+TGG | - | chr7_4:61590245-61590264 | None:intergenic | 30.0% | |
| TTGTGAGAATCAGATTGAAA+AGG | - | chr7_4:61590311-61590330 | None:intergenic | 30.0% | |
| CAAAGAAAGTGATTTCACAT+GGG | - | chr7_4:61590348-61590367 | None:intergenic | 30.0% | |
| TCAAAGAAAGTGATTTCACA+TGG | - | chr7_4:61590349-61590368 | None:intergenic | 30.0% | |
| TTGAGATGTCATAATCTTGA+GGG | - | chr7_4:61590644-61590663 | None:intergenic | 30.0% | |
| !! | ATGATATAGAATTTTGGAGG+TGG | + | chr7_4:61590712-61590731 | Msa1168770:three_prime_UTR | 30.0% |
| ACAGTGAAAGACAAAGATGA+AGG | - | chr7_4:61586892-61586911 | None:intergenic | 35.0% | |
| !!! | TGGTAGGTAGTTTTTTTACC+AGG | - | chr7_4:61587046-61587065 | None:intergenic | 35.0% |
| TACATACCAATTCATTGCCA+AGG | - | chr7_4:61587084-61587103 | None:intergenic | 35.0% | |
| ! | GTGAGTTGAAATGGTGTATA+TGG | + | chr7_4:61587188-61587207 | Msa1168770:intron | 35.0% |
| CTCTGAACCAAACATTTGTA+CGG | + | chr7_4:61587451-61587470 | Msa1168770:intron | 35.0% | |
| GAAGGTAAAAAGTGAGAAGA+AGG | - | chr7_4:61587528-61587547 | None:intergenic | 35.0% | |
| !! | CTTTGAAATGCAAACAGTGA+AGG | - | chr7_4:61587546-61587565 | None:intergenic | 35.0% |
| ACAAGAAAACCAAATAACGG+TGG | - | chr7_4:61587672-61587691 | None:intergenic | 35.0% | |
| ! | ATTGATCTTGTTTATGGAGG+AGG | + | chr7_4:61587749-61587768 | Msa1168770:CDS | 35.0% |
| GTGTTATATACCCAATGACA+TGG | - | chr7_4:61587826-61587845 | None:intergenic | 35.0% | |
| TATTTGTCTAGTACTTCCTC+CGG | + | chr7_4:61588067-61588086 | Msa1168770:intron | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | - | chr7_4:61588199-61588218 | None:intergenic | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | + | chr7_4:61588199-61588218 | Msa1168770:intron | 35.0% | |
| TTCTTATAATAAGGACCGGA+GGG | + | chr7_4:61588200-61588219 | Msa1168770:intron | 35.0% | |
| CGCTCAAAATTTGATGTATC+TGG | + | chr7_4:61588274-61588293 | Msa1168770:intron | 35.0% | |
| !!! | TGGTTGCTTTTTAGACAGAA+TGG | + | chr7_4:61588656-61588675 | Msa1168770:intron | 35.0% |
| ! | CAACTGTTGTTGTGTTTTGT+GGG | + | chr7_4:61588722-61588741 | Msa1168770:intron | 35.0% |
| ! | AACTGTTGTTGTGTTTTGTG+GGG | + | chr7_4:61588723-61588742 | Msa1168770:intron | 35.0% |
| ! | GTTTGAAGCAATGAGAAAAG+AGG | - | chr7_4:61588966-61588985 | None:intergenic | 35.0% |
| TTAAGGGATAAGGTAAGGTA+AGG | - | chr7_4:61589105-61589124 | None:intergenic | 35.0% | |
| TGTGTCTCTGATCAACTATA+TGG | + | chr7_4:61589158-61589177 | Msa1168770:intron | 35.0% | |
| TCTGATCAACTATATGGTTC+AGG | + | chr7_4:61589164-61589183 | Msa1168770:intron | 35.0% | |
| CACTGTTCAAACAAAAGTAG+TGG | - | chr7_4:61589206-61589225 | None:intergenic | 35.0% | |
| !! | CACTACTTTTGTTTGAACAG+TGG | + | chr7_4:61589204-61589223 | Msa1168770:intron | 35.0% |
| GAAAAGGATGAAACAATGTC+AGG | - | chr7_4:61589320-61589339 | None:intergenic | 35.0% | |
| AACTAGTACTAGCAGTAGAA+AGG | - | chr7_4:61589348-61589367 | None:intergenic | 35.0% | |
| AAAATTAGTGACAGAGAGAG+TGG | + | chr7_4:61589417-61589436 | Msa1168770:intron | 35.0% | |
| ! | TGGGAATCAATTTTCTTAGG+AGG | - | chr7_4:61589485-61589504 | None:intergenic | 35.0% |
| ! | CCTTGGGAATCAATTTTCTT+AGG | - | chr7_4:61589488-61589507 | None:intergenic | 35.0% |
| ! | CCTAAGAAAATTGATTCCCA+AGG | + | chr7_4:61589485-61589504 | Msa1168770:intron | 35.0% |
| TCCAAATGTAGCTATGGATA+TGG | - | chr7_4:61589557-61589576 | None:intergenic | 35.0% | |
| TTTGTGTCCAAATGTAGCTA+TGG | - | chr7_4:61589563-61589582 | None:intergenic | 35.0% | |
| TTATTTAAATCGTGGTCGCA+TGG | + | chr7_4:61589613-61589632 | Msa1168770:intron | 35.0% | |
| GTTTGATGTAGCTTCAATTG+TGG | + | chr7_4:61589672-61589691 | Msa1168770:intron | 35.0% | |
| TCTGAATTAACTTATGCAGG+TGG | + | chr7_4:61589789-61589808 | Msa1168770:intron | 35.0% | |
| TTAACTTATGCAGGTGGATA+TGG | + | chr7_4:61589795-61589814 | Msa1168770:intron | 35.0% | |
| ACAATTATGTGACGAGCATT+TGG | - | chr7_4:61590064-61590083 | None:intergenic | 35.0% | |
| AGAGTTAGTTAAGAAGTTGG+AGG | + | chr7_4:61590102-61590121 | Msa1168770:CDS | 35.0% | |
| GAACTTCTTGGATAAACTAG+AGG | - | chr7_4:61590252-61590271 | None:intergenic | 35.0% | |
| CTTGAGATGTCATAATCTTG+AGG | - | chr7_4:61590645-61590664 | None:intergenic | 35.0% | |
| CTCAAGATTATGACATCTCA+AGG | + | chr7_4:61590643-61590662 | Msa1168770:CDS | 35.0% | |
| CTATGTTTACTTCACTTGCA+AGG | + | chr7_4:61590676-61590695 | Msa1168770:three_prime_UTR | 35.0% | |
| AAAGATGAGGATGACTCTTA+AGG | - | chr7_4:61590959-61590978 | None:intergenic | 35.0% | |
| CTTGATCAACACAAAAGATG+AGG | - | chr7_4:61590972-61590991 | None:intergenic | 35.0% | |
| ! | GCTTTGTTGCTACTACTCTT+TGG | - | chr7_4:61586830-61586849 | None:intergenic | 40.0% |
| ! | TAACAAATGGACTCACGCAA+TGG | + | chr7_4:61586968-61586987 | Msa1168770:exon | 40.0% |
| ACTCACGCAATGGTGAAATA+AGG | + | chr7_4:61586978-61586997 | Msa1168770:CDS | 40.0% | |
| CAATTCATTGCCAAGGTTCA+TGG | - | chr7_4:61587077-61587096 | None:intergenic | 40.0% | |
| CATGAACCTTGGCAATGAAT+TGG | + | chr7_4:61587075-61587094 | Msa1168770:CDS | 40.0% | |
| TCATAGTCACCACCGTTATT+TGG | + | chr7_4:61587660-61587679 | Msa1168770:intron | 40.0% | |
| GTTTCTCAAGCTGTTCATGA+TGG | + | chr7_4:61587794-61587813 | Msa1168770:CDS | 40.0% | |
| TACTAGACAAATACCTCTCG+AGG | - | chr7_4:61588060-61588079 | None:intergenic | 40.0% | |
| ! | GGTTAAACTTTTACTCCCTC+CGG | - | chr7_4:61588218-61588237 | None:intergenic | 40.0% |
| !!! | GATGTCATTTTGCAGCTAAC+TGG | + | chr7_4:61588396-61588415 | Msa1168770:intron | 40.0% |
| TGAAACAGTAGGAGAAGTGA+AGG | + | chr7_4:61588419-61588438 | Msa1168770:CDS | 40.0% | |
| CTGTTGCTGATATGCATCAA+AGG | + | chr7_4:61588442-61588461 | Msa1168770:CDS | 40.0% | |
| ! | GATGCTTTTATTGCCTTACC+AGG | + | chr7_4:61588489-61588508 | Msa1168770:CDS | 40.0% |
| CCACAAAACACAACAACAGT+TGG | - | chr7_4:61588724-61588743 | None:intergenic | 40.0% | |
| ! | CCAACTGTTGTTGTGTTTTG+TGG | + | chr7_4:61588721-61588740 | Msa1168770:intron | 40.0% |
| CCTTTCTTGTCCTCAATGAA+TGG | - | chr7_4:61588870-61588889 | None:intergenic | 40.0% | |
| CCATTCATTGAGGACAAGAA+AGG | + | chr7_4:61588867-61588886 | Msa1168770:intron | 40.0% | |
| GCCATATCCATAGCTACATT+TGG | + | chr7_4:61589553-61589572 | Msa1168770:intron | 40.0% | |
| ! | TGTTTGTTAGGTCTATGCGA+CGG | - | chr7_4:61589706-61589725 | None:intergenic | 40.0% |
| ACTTGGAATTCATGACAAGC+CGG | + | chr7_4:61589857-61589876 | Msa1168770:CDS | 40.0% | |
| GTCATTCATTGACAAAGCTG+TGG | + | chr7_4:61590021-61590040 | Msa1168770:CDS | 40.0% | |
| ATTGACAAAGCTGTGGAAGA+AGG | + | chr7_4:61590028-61590047 | Msa1168770:CDS | 40.0% | |
| TTGACAAAGCTGTGGAAGAA+GGG | + | chr7_4:61590029-61590048 | Msa1168770:CDS | 40.0% | |
| AAACACTGGCAAGAACTTCT+TGG | - | chr7_4:61590264-61590283 | None:intergenic | 40.0% | |
| AAGTTCTTGCCAGTGTTTGT+TGG | + | chr7_4:61590266-61590285 | Msa1168770:intron | 40.0% | |
| GTAATAGTGCCAACAAACAC+TGG | - | chr7_4:61590278-61590297 | None:intergenic | 40.0% | |
| GAGTATGTTCCATGTCATGA+GGG | + | chr7_4:61590573-61590592 | Msa1168770:CDS | 40.0% | |
| ! | GCGTGAGTCCATTTGTTAGT+TGG | - | chr7_4:61586966-61586985 | None:intergenic | 45.0% |
| ! | GTTTTCTGTGGAAGTAGTCC+TGG | + | chr7_4:61587025-61587044 | Msa1168770:CDS | 45.0% |
| ! | GTTTATGGAGGAGGAAGCAT+TGG | + | chr7_4:61587758-61587777 | Msa1168770:CDS | 45.0% |
| TCTCAAGCTGTTCATGATGG+CGG | + | chr7_4:61587797-61587816 | Msa1168770:CDS | 45.0% | |
| CAGCTAACTGGTGAAACAGT+AGG | + | chr7_4:61588408-61588427 | Msa1168770:intron | 45.0% | |
| GCATCAAAGGAAAGCTGAGA+TGG | + | chr7_4:61588455-61588474 | Msa1168770:CDS | 45.0% | |
| TGCTAAGTGCTAACCTGGTA+AGG | - | chr7_4:61588505-61588524 | None:intergenic | 45.0% | |
| TTGCATGCTAAGTGCTAACC+TGG | - | chr7_4:61588510-61588529 | None:intergenic | 45.0% | |
| CTAGTGTGGTCCATTCATTG+AGG | + | chr7_4:61588857-61588876 | Msa1168770:intron | 45.0% | |
| GATGAAACAATGTCAGGTGC+AGG | - | chr7_4:61589314-61589333 | None:intergenic | 45.0% | |
| ATTAGTGACAGAGAGAGTGG+AGG | + | chr7_4:61589420-61589439 | Msa1168770:intron | 45.0% | |
| TATGGATATGGCAGTGTCAG+GGG | - | chr7_4:61589545-61589564 | None:intergenic | 45.0% | |
| CTATGGATATGGCAGTGTCA+GGG | - | chr7_4:61589546-61589565 | None:intergenic | 45.0% | |
| TTTAAATCGTGGTCGCATGG+CGG | + | chr7_4:61589616-61589635 | Msa1168770:intron | 45.0% | |
| AGGTGGATATGGAACTCTAG+AGG | + | chr7_4:61589806-61589825 | Msa1168770:intron | 45.0% | |
| GTCATAACATGGGCTCAACT+TGG | + | chr7_4:61589840-61589859 | Msa1168770:CDS | 45.0% | |
| GGAGTATGTTCCATGTCATG+AGG | + | chr7_4:61590572-61590591 | Msa1168770:intron | 45.0% | |
| GTCATCGCAACAACGGAAAT+TGG | - | chr7_4:61591054-61591073 | None:intergenic | 45.0% | |
| GTTCATGGCAGCATCTTGGT+AGG | - | chr7_4:61587062-61587081 | None:intergenic | 50.0% | |
| CAAGGTTCATGGCAGCATCT+TGG | - | chr7_4:61587066-61587085 | None:intergenic | 50.0% | |
| CAAGATGCTGCCATGAACCT+TGG | + | chr7_4:61587064-61587083 | Msa1168770:CDS | 50.0% | |
| !! | AGGAGGAAGCATTGGTCTCA+TGG | + | chr7_4:61587766-61587785 | Msa1168770:CDS | 50.0% |
| !! | GGAGGAAGCATTGGTCTCAT+GGG | + | chr7_4:61587767-61587786 | Msa1168770:CDS | 50.0% |
| TCTCGAGGCATGAGTGTCTT+GGG | - | chr7_4:61588045-61588064 | None:intergenic | 50.0% | |
| TGTCAGGTGCAGGTGCTAAT+TGG | - | chr7_4:61589304-61589323 | None:intergenic | 50.0% | |
| ATATGGCAGTGTCAGGGGAA+AGG | - | chr7_4:61589540-61589559 | None:intergenic | 50.0% | |
| GCTATGGATATGGCAGTGTC+AGG | - | chr7_4:61589547-61589566 | None:intergenic | 50.0% | |
| GAAGCAACACCCTCATGACA+TGG | - | chr7_4:61590585-61590604 | None:intergenic | 50.0% | |
| !! | GTGTTGCTTCCAAGTTGAGC+TGG | + | chr7_4:61590595-61590614 | Msa1168770:CDS | 50.0% |
| ! | TTCCAAGTTGAGCTGGCAGA+TGG | + | chr7_4:61590602-61590621 | Msa1168770:CDS | 50.0% |
| TTCCATCTGCCAGCTCAACT+TGG | - | chr7_4:61590607-61590626 | None:intergenic | 50.0% | |
| ATGGCGGTCGCCATGTCATT+GGG | + | chr7_4:61587813-61587832 | Msa1168770:CDS | 55.0% | |
| CTCTCGAGGCATGAGTGTCT+TGG | - | chr7_4:61588046-61588065 | None:intergenic | 55.0% | |
| CAAGACACTCATGCCTCGAG+AGG | + | chr7_4:61588044-61588063 | Msa1168770:CDS | 55.0% | |
| ! | GATGGCGGTCGCCATGTCAT+TGG | + | chr7_4:61587812-61587831 | Msa1168770:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 61586826 | 61591077 | 61586826 | ID=Msa1168770;Name=Msa1168770 |
| chr7_4 | mRNA | 61586826 | 61591077 | 61586826 | ID=Msa1168770-mRNA-1;Parent=Msa1168770;Name=Msa1168770-mRNA-1;_AED=0.09;_eAED=0.09;_QI=148|1|1|1|1|1|7|409|220 |
| chr7_4 | exon | 61586826 | 61587096 | 61586826 | ID=Msa1168770-mRNA-1:exon:19468;Parent=Msa1168770-mRNA-1 |
| chr7_4 | exon | 61587737 | 61587834 | 61587737 | ID=Msa1168770-mRNA-1:exon:19469;Parent=Msa1168770-mRNA-1 |
| chr7_4 | exon | 61588035 | 61588065 | 61588035 | ID=Msa1168770-mRNA-1:exon:19470;Parent=Msa1168770-mRNA-1 |
| chr7_4 | exon | 61588411 | 61588510 | 61588411 | ID=Msa1168770-mRNA-1:exon:19471;Parent=Msa1168770-mRNA-1 |
| chr7_4 | exon | 61589808 | 61589878 | 61589808 | ID=Msa1168770-mRNA-1:exon:19472;Parent=Msa1168770-mRNA-1 |
| chr7_4 | exon | 61589980 | 61590123 | 61589980 | ID=Msa1168770-mRNA-1:exon:19473;Parent=Msa1168770-mRNA-1 |
| chr7_4 | exon | 61590573 | 61591077 | 61590573 | ID=Msa1168770-mRNA-1:exon:19474;Parent=Msa1168770-mRNA-1 |
| chr7_4 | five_prime_UTR | 61586826 | 61586973 | 61586826 | ID=Msa1168770-mRNA-1:five_prime_utr;Parent=Msa1168770-mRNA-1 |
| chr7_4 | CDS | 61586974 | 61587096 | 61586974 | ID=Msa1168770-mRNA-1:cds;Parent=Msa1168770-mRNA-1 |
| chr7_4 | CDS | 61587737 | 61587834 | 61587737 | ID=Msa1168770-mRNA-1:cds;Parent=Msa1168770-mRNA-1 |
| chr7_4 | CDS | 61588035 | 61588065 | 61588035 | ID=Msa1168770-mRNA-1:cds;Parent=Msa1168770-mRNA-1 |
| chr7_4 | CDS | 61588411 | 61588510 | 61588411 | ID=Msa1168770-mRNA-1:cds;Parent=Msa1168770-mRNA-1 |
| chr7_4 | CDS | 61589808 | 61589878 | 61589808 | ID=Msa1168770-mRNA-1:cds;Parent=Msa1168770-mRNA-1 |
| chr7_4 | CDS | 61589980 | 61590123 | 61589980 | ID=Msa1168770-mRNA-1:cds;Parent=Msa1168770-mRNA-1 |
| chr7_4 | CDS | 61590573 | 61590668 | 61590573 | ID=Msa1168770-mRNA-1:cds;Parent=Msa1168770-mRNA-1 |
| chr7_4 | three_prime_UTR | 61590669 | 61591077 | 61590669 | ID=Msa1168770-mRNA-1:three_prime_utr;Parent=Msa1168770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
