AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0003370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0003370 MtrunA17_Chr1g0155591 96.667 240 8 0 1 240 1 240 3.51e-176 483
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0003370 AT1G35180.1 62.719 228 83 1 2 227 3 230 5.16e-110 316
Msa0003370 AT1G35170.1 63.033 211 76 1 16 226 19 227 3.24e-100 291
Msa0003370 AT1G45010.1 62.115 227 84 1 2 226 3 229 5.25e-100 291
Msa0003370 AT1G35170.4 62.431 181 68 0 16 196 19 199 1.39e-84 251
Msa0003370 AT1G45010.3 60.622 193 74 1 2 192 3 195 1.50e-81 243
Msa0003370 AT1G45010.2 64.706 153 54 0 74 226 1 153 7.88e-73 219
Msa0003370 AT1G35170.2 65.753 146 50 0 16 161 19 164 2.24e-71 216
Msa0003370 AT1G35170.3 65.753 146 50 0 16 161 19 164 2.24e-71 216
Msa0003370 AT1G45010.4 62.346 162 59 1 2 161 3 164 1.28e-68 209

Find 75 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACAAAATCTGAATGATTTA+TGG 0.135522 1_1:+5879910 None:intergenic
GAGAAATCAAATGAACATTT+TGG 0.163912 1_1:+5883004 None:intergenic
TTACATCTGCAGTCAAATTA+AGG 0.189859 1_1:+5881409 None:intergenic
TATTCATTGGACAATAATTT+AGG 0.228489 1_1:-5880151 Msa0003370:three_prime_UTR
TGATGCGATAACATCATATT+TGG 0.229936 1_1:-5880069 Msa0003370:three_prime_UTR
CTTGATGAGAAATGGGTTAT+TGG 0.254552 1_1:+5880577 None:intergenic
TTTGAAGCCACTGGACAAAT+TGG 0.271253 1_1:+5882905 None:intergenic
TTTGGATGATGATGATTTCT+TGG 0.316280 1_1:+5880350 None:intergenic
GTCCCACAATGCTTACTAAA+TGG 0.321372 1_1:+5882644 None:intergenic
ATTTCATAGCTATATTTATA+CGG 0.323646 1_1:-5883444 Msa0003370:five_prime_UTR
CTACTTTATCTGTTCAAGAT+TGG 0.324800 1_1:-5882934 Msa0003370:CDS
ATTCTACATCAATCAGTGTT+TGG 0.326066 1_1:-5880273 Msa0003370:three_prime_UTR
TATTATACCTTGATGAGAAA+TGG 0.337195 1_1:+5880569 None:intergenic
ATTTGATCAGATGGAAGTTC+TGG 0.337359 1_1:-5882746 Msa0003370:intron
CAGAGATGGTGGGAGCAGTA+TGG 0.350230 1_1:-5881503 Msa0003370:CDS
TTTCGTACATATATATTCAT+TGG 0.352894 1_1:-5880164 Msa0003370:three_prime_UTR
TGCAGCTGGTAAGTACATTC+TGG 0.354832 1_1:-5880410 Msa0003370:CDS
CTATTACAGGCTATGGGATT+GGG 0.373800 1_1:-5880435 Msa0003370:intron
CATTTCACAAGCTTTGAGTT+TGG 0.374521 1_1:-5880026 Msa0003370:three_prime_UTR
TTCTACATCAATCAGTGTTT+GGG 0.376016 1_1:-5880272 Msa0003370:three_prime_UTR
TTGAAGAGAATATAGAGAAA+TGG 0.376482 1_1:-5883104 Msa0003370:exon
AATCTGAATGATTTATGGTT+AGG 0.380485 1_1:+5879915 None:intergenic
ACAATAATTTAGGAGGAGAT+TGG 0.391152 1_1:-5880141 Msa0003370:three_prime_UTR
ACATTTGCTAGGATGATGAT+TGG 0.391517 1_1:-5880629 Msa0003370:CDS
AATACTTTATTATACAACTA+TGG 0.392789 1_1:+5883247 None:intergenic
TACATCTGCAGTCAAATTAA+GGG 0.403745 1_1:+5881410 None:intergenic
AAGTACTTTATATCATTCAT+TGG 0.414126 1_1:+5880237 None:intergenic
ATTATACCTTGATGAGAAAT+GGG 0.416729 1_1:+5880570 None:intergenic
AGCTCCCTCAAATGCAAGAA+TGG 0.423674 1_1:+5881462 None:intergenic
ACTATTACAGGCTATGGGAT+TGG 0.428555 1_1:-5880436 Msa0003370:intron
GTTCATTTGATTTCTCCAAC+AGG 0.436461 1_1:-5882997 Msa0003370:CDS
TTCAAATTCTTCTTACAGAC+AGG 0.438036 1_1:-5882888 Msa0003370:intron
CAAGCCCATTCTTGCATTTG+AGG 0.445389 1_1:-5881467 Msa0003370:CDS
TCTAAAGGAGCTTGGTTACA+AGG 0.454047 1_1:-5881439 Msa0003370:CDS
GCATTTGAGGGAGCTTCTAA+AGG 0.464317 1_1:-5881454 Msa0003370:CDS
AAGCCCATTCTTGCATTTGA+GGG 0.465855 1_1:-5881466 Msa0003370:CDS
CACCATTTAGTAAGCATTGT+GGG 0.466117 1_1:-5882646 Msa0003370:CDS
CAATAACCCATTTCTCATCA+AGG 0.469006 1_1:-5880576 Msa0003370:intron
TATGGGATTGGGTTTGCAGC+TGG 0.477409 1_1:-5880424 Msa0003370:CDS
AGCATTGTGGGACTGATAGC+TGG 0.478228 1_1:-5882634 Msa0003370:CDS
GCTCCCTCAAATGCAAGAAT+GGG 0.481370 1_1:+5881463 None:intergenic
ACACCACCAACATCAAAAGC+AGG 0.487485 1_1:-5880314 Msa0003370:CDS
CTTCGACTATTACAGGCTAT+GGG 0.490448 1_1:-5880441 Msa0003370:intron
ATGCTATGGTTGCATCTAAG+AGG 0.491529 1_1:+5883311 None:intergenic
AGGGAGCTTCTAAAGGAGCT+TGG 0.499104 1_1:-5881447 Msa0003370:CDS
ATTGACTCTATTCCACTTGG+TGG 0.502846 1_1:+5879964 None:intergenic
TAAGAAGAATTTGAAGCCAC+TGG 0.506715 1_1:+5882896 None:intergenic
ACAAGCAAAATAATGATTGA+AGG 0.508742 1_1:+5880204 None:intergenic
AGCTGGCTTATGCTATCAAA+AGG 0.510458 1_1:-5882617 Msa0003370:intron
CTTCAATATTTACATTTGCT+AGG 0.511008 1_1:-5880640 Msa0003370:CDS
AGAGATGGTGGGAGCAGTAT+GGG 0.512111 1_1:-5881502 Msa0003370:CDS
GTGAAAGCAAAATTTGTGAA+TGG 0.514429 1_1:+5879859 None:intergenic
TAAGAGAATATGCTATGCTA+TGG 0.517220 1_1:+5883297 None:intergenic
ATTCAAAAGACAATTGTGGT+TGG 0.543048 1_1:-5883073 Msa0003370:CDS
CTAATTGACTCTATTCCACT+TGG 0.545263 1_1:+5879961 None:intergenic
GATCATAAATTAGATATGAC+AGG 0.545515 1_1:+5882716 None:intergenic
TCATTGGACAATAATTTAGG+AGG 0.547156 1_1:-5880148 Msa0003370:three_prime_UTR
CAAGCAAAATAATGATTGAA+GGG 0.550272 1_1:+5880205 None:intergenic
TGCTATGGTTGCATCTAAGA+GGG 0.555572 1_1:+5883312 None:intergenic
ATTGGAAGTTAATGTTACGT+AGG 0.557867 1_1:+5880595 None:intergenic
AATTGTAGAGACAATCCTGT+TGG 0.571539 1_1:+5882982 None:intergenic
TTCATCAAGATTCCACCAAG+TGG 0.577786 1_1:-5879976 Msa0003370:three_prime_UTR
ACTTTATTATACAACTATGG+TGG 0.581264 1_1:+5883250 None:intergenic
GAAATGTCCAATTTGTCCAG+TGG 0.588096 1_1:-5882912 Msa0003370:CDS
CCACAATGCTTACTAAATGG+TGG 0.601229 1_1:+5882647 None:intergenic
CCACCATTTAGTAAGCATTG+TGG 0.612304 1_1:-5882647 Msa0003370:CDS
AATGTTACGTAGGTGATACA+AGG 0.616770 1_1:+5880605 None:intergenic
ATATATTCAAAAGACAATTG+TGG 0.625016 1_1:-5883077 Msa0003370:CDS
ACATCTGCAGTCAAATTAAG+GGG 0.627723 1_1:+5881411 None:intergenic
TGATATAAAGTACTTCAAAG+TGG 0.630502 1_1:-5880229 Msa0003370:three_prime_UTR
AAGCAAAATAATGATTGAAG+GGG 0.632171 1_1:+5880206 None:intergenic
TCAGTGTGGCTCAGAGATGG+TGG 0.640532 1_1:-5881514 Msa0003370:intron
CAGTGTGGCTCAGAGATGGT+GGG 0.652161 1_1:-5881513 Msa0003370:CDS
TGATCAGTGTGGCTCAGAGA+TGG 0.653705 1_1:-5881517 Msa0003370:intron
GCTATGGTTGCATCTAAGAG+GGG 0.683081 1_1:+5883313 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATTTTTTTAAAAATTT+TGG + chr1_1:5882488-5882507 None:intergenic 0.0%
!! TTAAAATAAAATATGCAAAT+TGG + chr1_1:5881672-5881691 None:intergenic 10.0%
!! GTACAAAATAAATAAATATT+TGG + chr1_1:5881939-5881958 None:intergenic 10.0%
!!! GTTTAAAATATAAAAACTAA+GGG + chr1_1:5882775-5882794 None:intergenic 10.0%
!!! TGTTTAAAATATAAAAACTA+AGG + chr1_1:5882776-5882795 None:intergenic 10.0%
!! AATACTTTATTATACAACTA+TGG + chr1_1:5880056-5880075 None:intergenic 15.0%
!! ATATATCATTTGTACTTAAT+TGG - chr1_1:5880508-5880527 Msa0003370:intron 15.0%
!! TATTTGATGAAAAATTCAAT+TGG - chr1_1:5880619-5880638 Msa0003370:CDS 15.0%
!! ATTTGATGAAAAATTCAATT+GGG - chr1_1:5880620-5880639 Msa0003370:CDS 15.0%
!!! CTCAAAAATCTAATATTTTA+AGG - chr1_1:5881332-5881351 Msa0003370:intron 15.0%
!!! AATCTAATATTTTAAGGTTT+TGG - chr1_1:5881338-5881357 Msa0003370:intron 15.0%
!! TTTAATAATATGATACTCAT+TGG - chr1_1:5882810-5882829 Msa0003370:intron 15.0%
!! TAGATAAATAGAAACTTCAA+TGG + chr1_1:5880096-5880115 None:intergenic 20.0%
!! ATATATTCAAAAGACAATTG+TGG - chr1_1:5880223-5880242 Msa0003370:three_prime_UTR 20.0%
!! AAACTCTAAATTATTCTAAC+AGG + chr1_1:5880879-5880898 None:intergenic 20.0%
!! TCAAGAAATTTAATGCATTA+AGG - chr1_1:5880967-5880986 Msa0003370:intron 20.0%
!!! ATTCTATCCAACTTTTTATT+GGG + chr1_1:5881447-5881466 None:intergenic 20.0%
!!! AATTCTATCCAACTTTTTAT+TGG + chr1_1:5881448-5881467 None:intergenic 20.0%
!! AAACATTTAATCTATCTACA+TGG + chr1_1:5881591-5881610 None:intergenic 20.0%
!! ATGTAGATAGATTAAATGTT+TGG - chr1_1:5881590-5881609 Msa0003370:intron 20.0%
!!! CTTTTGTGTTAATTAATATG+AGG - chr1_1:5881722-5881741 Msa0003370:intron 20.0%
!! TGTTAATTAATATGAGGATT+TGG - chr1_1:5881728-5881747 Msa0003370:intron 20.0%
!!! TTTGGTTGATTTAAAAATAG+AGG + chr1_1:5882078-5882097 None:intergenic 20.0%
!! ATTGAAAATAGAACTAGATT+TGG + chr1_1:5882096-5882115 None:intergenic 20.0%
!! AATGGAAAAACAAGATATTT+AGG + chr1_1:5882128-5882147 None:intergenic 20.0%
!!! AATAGTTTGAAACAATATGA+TGG - chr1_1:5882365-5882384 Msa0003370:intron 20.0%
!! TTATAAATCATGACACTAAT+TGG + chr1_1:5882541-5882560 None:intergenic 20.0%
!! AAGTACTTTATATCATTCAT+TGG + chr1_1:5883066-5883085 None:intergenic 20.0%
!! TTTCGTACATATATATTCAT+TGG - chr1_1:5883136-5883155 Msa0003370:intron 20.0%
!! TATTCATTGGACAATAATTT+AGG - chr1_1:5883149-5883168 Msa0003370:intron 20.0%
! ACTTTATTATACAACTATGG+TGG + chr1_1:5880053-5880072 None:intergenic 25.0%
! TTGAAGAGAATATAGAGAAA+TGG - chr1_1:5880196-5880215 Msa0003370:three_prime_UTR 25.0%
!! GAGAAATCAAATGAACATTT+TGG + chr1_1:5880299-5880318 None:intergenic 25.0%
!! ATGTTTGAAATTTGATCAGA+TGG - chr1_1:5880545-5880564 Msa0003370:intron 25.0%
! GATCATAAATTAGATATGAC+AGG + chr1_1:5880587-5880606 None:intergenic 25.0%
!!! TGAGTGTTGAAAATATGTAA+AGG - chr1_1:5880939-5880958 Msa0003370:intron 25.0%
! TCAAACTCAATGGTTAATAA+AGG - chr1_1:5881087-5881106 Msa0003370:intron 25.0%
! CAAACTCAATGGTTAATAAA+GGG - chr1_1:5881088-5881107 Msa0003370:intron 25.0%
! AAACTCAATGGTTAATAAAG+GGG - chr1_1:5881089-5881108 Msa0003370:intron 25.0%
!!! AGGTTTTGGATAAAAAAATG+TGG - chr1_1:5881352-5881371 Msa0003370:intron 25.0%
!!! CAAGTTTGCTAGTAAAATTT+TGG - chr1_1:5881617-5881636 Msa0003370:intron 25.0%
! ATGTAAGTAAACCACTATTA+AGG - chr1_1:5881908-5881927 Msa0003370:intron 25.0%
! TAAGAAAGTGATAGAGTTTA+CGG - chr1_1:5881986-5882005 Msa0003370:intron 25.0%
! TTAGGTATATATCTTATTCC+AGG - chr1_1:5882010-5882029 Msa0003370:intron 25.0%
!!! TGTTGAGCAAGTAATTTTTT+TGG - chr1_1:5882040-5882059 Msa0003370:intron 25.0%
!!! TCATCTGTTAGCTTATTTTA+AGG + chr1_1:5882615-5882634 None:intergenic 25.0%
! CTTCAATATTTACATTTGCT+AGG - chr1_1:5882660-5882679 Msa0003370:CDS 25.0%
! ATTATACCTTGATGAGAAAT+GGG + chr1_1:5882733-5882752 None:intergenic 25.0%
! TATTATACCTTGATGAGAAA+TGG + chr1_1:5882734-5882753 None:intergenic 25.0%
! AAATCATCATCATCCAAAAA+TGG - chr1_1:5882955-5882974 Msa0003370:CDS 25.0%
!! TGATATAAAGTACTTCAAAG+TGG - chr1_1:5883071-5883090 Msa0003370:CDS 25.0%
! AAGCAAAATAATGATTGAAG+GGG + chr1_1:5883097-5883116 None:intergenic 25.0%
! CAAGCAAAATAATGATTGAA+GGG + chr1_1:5883098-5883117 None:intergenic 25.0%
! ACAAGCAAAATAATGATTGA+AGG + chr1_1:5883099-5883118 None:intergenic 25.0%
! AATCTGAATGATTTATGGTT+AGG + chr1_1:5883388-5883407 None:intergenic 25.0%
! GACAAAATCTGAATGATTTA+TGG + chr1_1:5883393-5883412 None:intergenic 25.0%
TAAGAGAATATGCTATGCTA+TGG + chr1_1:5880006-5880025 None:intergenic 30.0%
ATTCAAAAGACAATTGTGGT+TGG - chr1_1:5880227-5880246 Msa0003370:three_prime_UTR 30.0%
! CAACAACTTTTCTTGTAATG+AGG - chr1_1:5880264-5880283 Msa0003370:three_prime_UTR 30.0%
!! TGCAATTTTAGCAGTAACAT+TGG - chr1_1:5880343-5880362 Msa0003370:CDS 30.0%
CTACTTTATCTGTTCAAGAT+TGG - chr1_1:5880366-5880385 Msa0003370:CDS 30.0%
TTCAAATTCTTCTTACAGAC+AGG - chr1_1:5880412-5880431 Msa0003370:CDS 30.0%
!! TAGTTGAAAGTGTTGTGAAT+TGG - chr1_1:5880907-5880926 Msa0003370:intron 30.0%
AGATATCCAACTCATTTATG+TGG - chr1_1:5881006-5881025 Msa0003370:intron 30.0%
AAACAACCACATAAATGAGT+TGG + chr1_1:5881015-5881034 None:intergenic 30.0%
TGTTACACCCAATAAAAAGT+TGG - chr1_1:5881437-5881456 Msa0003370:CDS 30.0%
!! AATATGAGGATTTGGTGATA+AGG - chr1_1:5881736-5881755 Msa0003370:intron 30.0%
CTATAAACATATGATCAGTG+TGG - chr1_1:5881772-5881791 Msa0003370:intron 30.0%
TACATCTGCAGTCAAATTAA+GGG + chr1_1:5881893-5881912 None:intergenic 30.0%
TTACATCTGCAGTCAAATTA+AGG + chr1_1:5881894-5881913 None:intergenic 30.0%
ATTTGGTATGTCCTTAATAG+TGG + chr1_1:5881922-5881941 None:intergenic 30.0%
ATTACACATGCAATGTTCTT+TGG + chr1_1:5881961-5881980 None:intergenic 30.0%
CATTTCTTAGCATGTAAGAA+TGG - chr1_1:5882262-5882281 Msa0003370:intron 30.0%
AGTTAGAAGAAGGAAAACTT+TGG - chr1_1:5882287-5882306 Msa0003370:intron 30.0%
ATTGGAAGTTAATGTTACGT+AGG + chr1_1:5882708-5882727 None:intergenic 30.0%
! TTTGGATGATGATGATTTCT+TGG + chr1_1:5882953-5882972 None:intergenic 30.0%
ATTCTACATCAATCAGTGTT+TGG - chr1_1:5883027-5883046 Msa0003370:CDS 30.0%
TTCTACATCAATCAGTGTTT+GGG - chr1_1:5883028-5883047 Msa0003370:CDS 30.0%
TCATTGGACAATAATTTAGG+AGG - chr1_1:5883152-5883171 Msa0003370:intron 30.0%
ACAATAATTTAGGAGGAGAT+TGG - chr1_1:5883159-5883178 Msa0003370:intron 30.0%
TGATGCGATAACATCATATT+TGG - chr1_1:5883231-5883250 Msa0003370:intron 30.0%
GTGAAAGCAAAATTTGTGAA+TGG + chr1_1:5883444-5883463 None:intergenic 30.0%
!!! TTGTGGTTGGAGTTTTTTCA+TGG - chr1_1:5880240-5880259 Msa0003370:three_prime_UTR 35.0%
! GTTCATTTGATTTCTCCAAC+AGG - chr1_1:5880303-5880322 Msa0003370:CDS 35.0%
AATTGTAGAGACAATCCTGT+TGG + chr1_1:5880321-5880340 None:intergenic 35.0%
! TAAGAAGAATTTGAAGCCAC+TGG + chr1_1:5880407-5880426 None:intergenic 35.0%
ATTTGATCAGATGGAAGTTC+TGG - chr1_1:5880554-5880573 Msa0003370:intron 35.0%
! CACCATTTAGTAAGCATTGT+GGG - chr1_1:5880654-5880673 Msa0003370:intron 35.0%
!! TTGAAAGTGTTGTGAATTGG+AGG - chr1_1:5880910-5880929 Msa0003370:intron 35.0%
!!! TGGTTGTTTTTGACTCAATG+TGG - chr1_1:5881026-5881045 Msa0003370:intron 35.0%
!!! GGTTGTTTTTGACTCAATGT+GGG - chr1_1:5881027-5881046 Msa0003370:intron 35.0%
GAAATTCTTTCCGACAATAG+TGG - chr1_1:5881127-5881146 Msa0003370:intron 35.0%
AATGGATGATCTTACGTTTG+AGG - chr1_1:5881242-5881261 Msa0003370:intron 35.0%
ATGGATGATCTTACGTTTGA+GGG - chr1_1:5881243-5881262 Msa0003370:intron 35.0%
ATTGTTGTGTCAAGTGTGAT+TGG - chr1_1:5881270-5881289 Msa0003370:intron 35.0%
TTATTGGGTGTAACAGCTTA+GGG + chr1_1:5881432-5881451 None:intergenic 35.0%
TTTATTGGGTGTAACAGCTT+AGG + chr1_1:5881433-5881452 None:intergenic 35.0%
ACATCTGCAGTCAAATTAAG+GGG + chr1_1:5881892-5881911 None:intergenic 35.0%
AGAACATTGCATGTGTAATC+TGG - chr1_1:5881962-5881981 Msa0003370:intron 35.0%
AGTGATAGAGTTTACGGTTT+AGG - chr1_1:5881992-5882011 Msa0003370:intron 35.0%
CGAGTACTTTAGATAGGAAA+TGG + chr1_1:5882146-5882165 None:intergenic 35.0%
! TTTCCTATCTAAAGTACTCG+AGG - chr1_1:5882146-5882165 Msa0003370:intron 35.0%
! TTCCTATCTAAAGTACTCGA+GGG - chr1_1:5882147-5882166 Msa0003370:intron 35.0%
AAGAATGGAGAGTTAGAAGA+AGG - chr1_1:5882277-5882296 Msa0003370:intron 35.0%
AGCTAACAGATGAGTTTGTA+TGG - chr1_1:5882622-5882641 Msa0003370:CDS 35.0%
! ACATTTGCTAGGATGATGAT+TGG - chr1_1:5882671-5882690 Msa0003370:CDS 35.0%
AATGTTACGTAGGTGATACA+AGG + chr1_1:5882698-5882717 None:intergenic 35.0%
!! CTTGATGAGAAATGGGTTAT+TGG + chr1_1:5882726-5882745 None:intergenic 35.0%
CAATAACCCATTTCTCATCA+AGG - chr1_1:5882724-5882743 Msa0003370:CDS 35.0%
!! CATTTCACAAGCTTTGAGTT+TGG - chr1_1:5883274-5883293 Msa0003370:five_prime_UTR 35.0%
! CTAATTGACTCTATTCCACT+TGG + chr1_1:5883342-5883361 None:intergenic 35.0%
TGCTATGGTTGCATCTAAGA+GGG + chr1_1:5879991-5880010 None:intergenic 40.0%
ATGCTATGGTTGCATCTAAG+AGG + chr1_1:5879992-5880011 None:intergenic 40.0%
GAAATGTCCAATTTGTCCAG+TGG - chr1_1:5880388-5880407 Msa0003370:CDS 40.0%
! TTTGAAGCCACTGGACAAAT+TGG + chr1_1:5880398-5880417 None:intergenic 40.0%
CCACAATGCTTACTAAATGG+TGG + chr1_1:5880656-5880675 None:intergenic 40.0%
! CCACCATTTAGTAAGCATTG+TGG - chr1_1:5880653-5880672 Msa0003370:CDS 40.0%
GTCCCACAATGCTTACTAAA+TGG + chr1_1:5880659-5880678 None:intergenic 40.0%
! AGCTGGCTTATGCTATCAAA+AGG - chr1_1:5880683-5880702 Msa0003370:intron 40.0%
GTGTTGTGAATTGGAGGAAA+AGG - chr1_1:5880916-5880935 Msa0003370:intron 40.0%
! ACTCAATGTGGGTGATCTTT+TGG - chr1_1:5881038-5881057 Msa0003370:intron 40.0%
TTGAGTTTGACACCACGTTT+GGG + chr1_1:5881077-5881096 None:intergenic 40.0%
ATTGAGTTTGACACCACGTT+TGG + chr1_1:5881078-5881097 None:intergenic 40.0%
! AAACGTGGTGTCAAACTCAA+TGG - chr1_1:5881077-5881096 Msa0003370:intron 40.0%
AGAATTTCGACACAAGGAGT+CGG + chr1_1:5881115-5881134 None:intergenic 40.0%
TCGGAAAGAATTTCGACACA+AGG + chr1_1:5881121-5881140 None:intergenic 40.0%
ACATACACTTGCATTGCCAT+TGG + chr1_1:5881180-5881199 None:intergenic 40.0%
AATGGCAATGCAAGTGTATG+TGG - chr1_1:5881179-5881198 Msa0003370:intron 40.0%
ATGAAAAAGCTTCCACTCGA+GGG - chr1_1:5881202-5881221 Msa0003370:intron 40.0%
CGTAAGATCATCCATTCATC+CGG + chr1_1:5881238-5881257 None:intergenic 40.0%
TTGTGTCAAGTGTGATTGGA+TGG - chr1_1:5881274-5881293 Msa0003370:intron 40.0%
AAGCCCATTCTTGCATTTGA+GGG - chr1_1:5881834-5881853 Msa0003370:intron 40.0%
TCTAAAGGAGCTTGGTTACA+AGG - chr1_1:5881861-5881880 Msa0003370:intron 40.0%
CTTGCTCAACAAAAATAGCC+TGG + chr1_1:5882031-5882050 None:intergenic 40.0%
AACCCTCGAGTACTTTAGAT+AGG + chr1_1:5882152-5882171 None:intergenic 40.0%
CCTGTAATAGTCGAAGGAAT+TGG + chr1_1:5882855-5882874 None:intergenic 40.0%
CCAATTCCTTCGACTATTAC+AGG - chr1_1:5882852-5882871 Msa0003370:intron 40.0%
CTTCGACTATTACAGGCTAT+GGG - chr1_1:5882859-5882878 Msa0003370:intron 40.0%
ACTATTACAGGCTATGGGAT+TGG - chr1_1:5882864-5882883 Msa0003370:intron 40.0%
CTATTACAGGCTATGGGATT+GGG - chr1_1:5882865-5882884 Msa0003370:intron 40.0%
TTCATCAAGATTCCACCAAG+TGG - chr1_1:5883324-5883343 Msa0003370:five_prime_UTR 40.0%
! ATTGACTCTATTCCACTTGG+TGG + chr1_1:5883339-5883358 None:intergenic 40.0%
GCTATGGTTGCATCTAAGAG+GGG + chr1_1:5879990-5880009 None:intergenic 45.0%
TTCCGACAATAGTGGTCAAG+CGG - chr1_1:5881135-5881154 Msa0003370:intron 45.0%
GATGAAAAAGCTTCCACTCG+AGG - chr1_1:5881201-5881220 Msa0003370:intron 45.0%
TGAAAAAGCTTCCACTCGAG+GGG - chr1_1:5881203-5881222 Msa0003370:intron 45.0%
TCCAGTTTAGATGATCCCTC+AGG - chr1_1:5881404-5881423 Msa0003370:intron 45.0%
CAAGCCCATTCTTGCATTTG+AGG - chr1_1:5881833-5881852 Msa0003370:intron 45.0%
GCTCCCTCAAATGCAAGAAT+GGG + chr1_1:5881840-5881859 None:intergenic 45.0%
AGCTCCCTCAAATGCAAGAA+TGG + chr1_1:5881841-5881860 None:intergenic 45.0%
GCATTTGAGGGAGCTTCTAA+AGG - chr1_1:5881846-5881865 Msa0003370:intron 45.0%
CCATAGCCTGTAATAGTCGA+AGG + chr1_1:5882861-5882880 None:intergenic 45.0%
CCTTCGACTATTACAGGCTA+TGG - chr1_1:5882858-5882877 Msa0003370:intron 45.0%
TGCAGCTGGTAAGTACATTC+TGG - chr1_1:5882890-5882909 Msa0003370:CDS 45.0%
!!! GGTGTGCTTGATGCCATTTT+TGG + chr1_1:5882971-5882990 None:intergenic 45.0%
ACACCACCAACATCAAAAGC+AGG - chr1_1:5882986-5883005 Msa0003370:CDS 45.0%
!! TGTCCTGCTTTTGATGTTGG+TGG + chr1_1:5882992-5883011 None:intergenic 45.0%
!! AGCTGTCCTGCTTTTGATGT+TGG + chr1_1:5882995-5883014 None:intergenic 45.0%
!!! TATTTTAAAAATATTCTTTA+TGG - chr1_1:5881684-5881703 Msa0003370:intron 5.0%
!! AATAACTTAATTATAATATA+AGG - chr1_1:5882445-5882464 Msa0003370:intron 5.0%
!! ATAACTTAATTATAATATAA+GGG - chr1_1:5882446-5882465 Msa0003370:intron 5.0%
AGCATTGTGGGACTGATAGC+TGG - chr1_1:5880666-5880685 Msa0003370:intron 50.0%
CACCACGTTTGGGTAGTGAA+GGG + chr1_1:5881067-5881086 None:intergenic 50.0%
ACACCACGTTTGGGTAGTGA+AGG + chr1_1:5881068-5881087 None:intergenic 50.0%
TTGCCATTGGACGCGTTCAA+TGG + chr1_1:5881167-5881186 None:intergenic 50.0%
GAAAAAGCTTCCACTCGAGG+GGG - chr1_1:5881204-5881223 Msa0003370:intron 50.0%
AAAAAGCTTCCACTCGAGGG+GGG - chr1_1:5881205-5881224 Msa0003370:intron 50.0%
GCCTGAGGGATCATCTAAAC+TGG + chr1_1:5881408-5881427 None:intergenic 50.0%
TAACAGCTTAGGGAGCCTGA+GGG + chr1_1:5881422-5881441 None:intergenic 50.0%
TGATCAGTGTGGCTCAGAGA+TGG - chr1_1:5881783-5881802 Msa0003370:intron 50.0%
!! AGAGATGGTGGGAGCAGTAT+GGG - chr1_1:5881798-5881817 Msa0003370:intron 50.0%
! AGGGAGCTTCTAAAGGAGCT+TGG - chr1_1:5881853-5881872 Msa0003370:intron 50.0%
TATGGGATTGGGTTTGCAGC+TGG - chr1_1:5882876-5882895 Msa0003370:intron 50.0%
CTCCCTTCACTACCCAAACG+TGG - chr1_1:5881062-5881081 Msa0003370:intron 55.0%
CGCCGCTTGACCACTATTGT+CGG + chr1_1:5881140-5881159 None:intergenic 55.0%
GCTCCATTGAACGCGTCCAA+TGG - chr1_1:5881161-5881180 Msa0003370:intron 55.0%
GTAACAGCTTAGGGAGCCTG+AGG + chr1_1:5881423-5881442 None:intergenic 55.0%
TCAGTGTGGCTCAGAGATGG+TGG - chr1_1:5881786-5881805 Msa0003370:intron 55.0%
CAGTGTGGCTCAGAGATGGT+GGG - chr1_1:5881787-5881806 Msa0003370:intron 55.0%
!! CAGAGATGGTGGGAGCAGTA+TGG - chr1_1:5881797-5881816 Msa0003370:intron 55.0%
GGGGTGCATAGCCGGATGAA+TGG - chr1_1:5881224-5881243 Msa0003370:intron 60.0%
! ACTCGAGGGGGGTGCATAGC+CGG - chr1_1:5881216-5881235 Msa0003370:intron 65.0%
GGCTATGCACCCCCCTCGAG+TGG + chr1_1:5881217-5881236 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 5879858 5883464 5879858 ID=Msa0003370;Name=Msa0003370
chr1_1 mRNA 5879858 5883464 5879858 ID=Msa0003370-mRNA-1;Parent=Msa0003370;Name=Msa0003370-mRNA-1;_AED=0.15;_eAED=0.15;_QI=232|1|1|1|0.8|0.66|6|444|240
chr1_1 exon 5879858 5880448 5879858 ID=Msa0003370-mRNA-1:exon:1848;Parent=Msa0003370-mRNA-1
chr1_1 exon 5880577 5880672 5880577 ID=Msa0003370-mRNA-1:exon:1847;Parent=Msa0003370-mRNA-1
chr1_1 exon 5881413 5881532 5881413 ID=Msa0003370-mRNA-1:exon:1846;Parent=Msa0003370-mRNA-1
chr1_1 exon 5882618 5882758 5882618 ID=Msa0003370-mRNA-1:exon:1845;Parent=Msa0003370-mRNA-1
chr1_1 exon 5882889 5883126 5882889 ID=Msa0003370-mRNA-1:exon:1844;Parent=Msa0003370-mRNA-1
chr1_1 exon 5883252 5883464 5883252 ID=Msa0003370-mRNA-1:exon:1843;Parent=Msa0003370-mRNA-1
chr1_1 five_prime_UTR 5883252 5883464 5883252 ID=Msa0003370-mRNA-1:five_prime_utr;Parent=Msa0003370-mRNA-1
chr1_1 five_prime_UTR 5883108 5883126 5883108 ID=Msa0003370-mRNA-1:five_prime_utr;Parent=Msa0003370-mRNA-1
chr1_1 CDS 5882889 5883107 5882889 ID=Msa0003370-mRNA-1:cds;Parent=Msa0003370-mRNA-1
chr1_1 CDS 5882618 5882758 5882618 ID=Msa0003370-mRNA-1:cds;Parent=Msa0003370-mRNA-1
chr1_1 CDS 5881413 5881532 5881413 ID=Msa0003370-mRNA-1:cds;Parent=Msa0003370-mRNA-1
chr1_1 CDS 5880577 5880672 5880577 ID=Msa0003370-mRNA-1:cds;Parent=Msa0003370-mRNA-1
chr1_1 CDS 5880302 5880448 5880302 ID=Msa0003370-mRNA-1:cds;Parent=Msa0003370-mRNA-1
chr1_1 three_prime_UTR 5879858 5880301 5879858 ID=Msa0003370-mRNA-1:three_prime_utr;Parent=Msa0003370-mRNA-1
Gene Sequence

>Msa0003370

ATGGAAGAATATATTCAAAAGACAATTGTGGTTGGAGTTTTTTCATGGACAACAACTTTTCTTGTAATGAGGAAAATCTTTCCAAAATGTTCATTTGATTTCTCCAACAGGATTGTCTCTACAATTCATGCAATTTTAGCAGTAACATTGGCTACTTTATCTGTTCAAGATTGGAAATGTCCAATTTGTCCAGTGGCTTCAAATTCTTCTTACAGACAGATGGAAGTTCTGGCAGTGAGCCTGTCATATCTAATTTATGATCTAGTGTGTTGTTTATTTGATGAAAAATTCAATTGGGACAACACTATCCACCATTTAGTAAGCATTGTGGGACTGATAGCTGGCTTATGCTATCAAAAGTGTGGCTCAGAGATGGTGGGAGCAGTATGGGTAACAGAGATGTCAAGCCCATTCTTGCATTTGAGGGAGCTTCTAAAGGAGCTTGGTTACAAGGACACTCCCCTTAATTTGACTGCAGATATTTTATTTGCTTCAATATTTACATTTGCTAGGATGATGATTGGACCTTGTATCACCTACGTAACATTAACTTCCAATAACCCATTTCTCATCAAGGCTATGGGATTGGGTTTGCAGCTGGTAAGTACATTCTGGTTCTTCAAAATTGTAAGAATGATGAGATACAAACTAACCAAGAAATCATCATCATCCAAAAATGGCATCAAGCACACCACCAACATCAAAAGCAGGACAGCTAGCTAG

Protein sequence

>Msa0003370

MEEYIQKTIVVGVFSWTTTFLVMRKIFPKCSFDFSNRIVSTIHAILAVTLATLSVQDWKCPICPVASNSSYRQMEVLAVSLSYLIYDLVCCLFDEKFNWDNTIHHLVSIVGLIAGLCYQKCGSEMVGAVWVTEMSSPFLHLRELLKELGYKDTPLNLTADILFASIFTFARMMIGPCITYVTLTSNNPFLIKAMGLGLQLVSTFWFFKIVRMMRYKLTKKSSSSKNGIKHTTNIKSRTAS*