AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0729130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0729130 MtrunA17_Chr5g0422401 97.952 293 6 0 1 293 148 440 0.0 589
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0729130 AT1G26090.1 58.503 294 118 2 1 293 165 455 1.12e-123 361

Find 116 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGACTTCTGTCTTGGAATT+TGG 0.162457 5_1:+35593783 None:intergenic
CAAGCTGGTGCTCAAGTTTC+AGG 0.173599 5_1:-35595982 Msa0729130:CDS
CTTTCGAATGATTCTGGTTT+TGG 0.183397 5_1:+35595934 None:intergenic
CAATTCTGCATTACGTTATT+GGG 0.192768 5_1:-35596016 Msa0729130:CDS
TTCTCAAATCCACAGAAATT+TGG 0.216274 5_1:-35596078 Msa0729130:CDS
TCAATTCTGCATTACGTTAT+TGG 0.222888 5_1:-35596017 Msa0729130:CDS
TTTGCTCTTTCGAATGATTC+TGG 0.223719 5_1:+35595928 None:intergenic
GCTCAAGTTTCAGGCGCTTT+TGG 0.247175 5_1:-35595973 Msa0729130:CDS
AACTGATGATGTCATATTAC+TGG 0.259593 5_1:+35595771 None:intergenic
TTGACAGAGGTTGGATTGTT+AGG 0.266572 5_1:+35596036 None:intergenic
TTAATAATCCTCAGCATAAA+AGG 0.279276 5_1:+35593712 None:intergenic
GAGGAGCTTGGCATCCTTCC+TGG 0.297777 5_1:-35596687 Msa0729130:five_prime_UTR
GGACACTTTGGATCAAATTC+TGG 0.320988 5_1:-35596279 Msa0729130:CDS
CTTGCACTTGAGAGGCTTGT+AGG 0.332180 5_1:-35596642 Msa0729130:CDS
TTGGCTGAGAAAACTGAAAT+TGG 0.346531 5_1:-35596401 Msa0729130:CDS
TGTTCGAACTAAACCCCTTT+TGG 0.351193 5_1:-35597470 Msa0729130:five_prime_UTR
CAGGCGTTTAAGATTAGCTT+TGG 0.356329 5_1:-35597548 Msa0729130:five_prime_UTR
TCGATTGGGCTATTTACTAA+TGG 0.357529 5_1:+35595865 None:intergenic
AATTTCGAGCTTCACATTTC+CGG 0.370043 5_1:-35597512 Msa0729130:five_prime_UTR
ATTTGATGTCATAAGAAAAT+CGG 0.374741 5_1:-35595746 Msa0729130:CDS
TAGGGGAGGATCTGAGCTTT+TGG 0.374945 5_1:-35593872 Msa0729130:CDS
CAGCAGCAGGCACTGCCAAA+AGG 0.383011 5_1:+35597455 None:intergenic
GAAAAGATTGAATCCATTCC+AGG 0.386011 5_1:+35596669 None:intergenic
CTGTACATTTGTGCATGAAT+TGG 0.392123 5_1:-35593663 Msa0729130:three_prime_UTR
GCAAGAACCTTTCAGCTGTT+AGG 0.392338 5_1:-35597046 Msa0729130:five_prime_UTR
AGCAGCAGATCTTATTTCAA+TGG 0.400613 5_1:-35596323 Msa0729130:CDS
AGCAGCAGGCACTGCCAAAA+GGG 0.404157 5_1:+35597456 None:intergenic
TATCTACTCAATTGTAAGAT+TGG 0.409599 5_1:-35597089 Msa0729130:five_prime_UTR
AAAACATTGTTCCAATCGAT+TGG 0.414883 5_1:+35595850 None:intergenic
CGCCGCTATCTTCGCCGCTC+AGG 0.428635 5_1:-35597350 Msa0729130:intron
AAGATTAGCTTTGGATTGGA+TGG 0.430982 5_1:-35597539 Msa0729130:five_prime_UTR
TTTCTCGGCAAAGGTGGCTC+TGG 0.432097 5_1:-35597382 Msa0729130:five_prime_UTR
CCTTGAATTTCTTGAGGCAA+AGG 0.436195 5_1:+35593820 None:intergenic
GAAAACTGAAATTGGTAGAT+TGG 0.441363 5_1:-35596393 Msa0729130:CDS
CTTGAATTTCTTGAGGCAAA+GGG 0.442218 5_1:+35593821 None:intergenic
GCTGAGGATTATTAATGTTA+CGG 0.443193 5_1:-35593704 Msa0729130:three_prime_UTR
TCTTGTTGACTCTTTGAAGA+TGG 0.447145 5_1:+35596606 None:intergenic
CGAGGAAACCTTGAGAATCA+TGG 0.447952 5_1:-35596547 Msa0729130:CDS
TAATTACAAGACTTCTGTCT+TGG 0.456853 5_1:+35593776 None:intergenic
TGCCTTGAGTCATATTAAGC+TGG 0.456940 5_1:+35596866 None:intergenic
GAAGAAGAAGAAGCAGCAGC+AGG 0.463529 5_1:+35597442 None:intergenic
TTGCACTTGAGAGGCTTGTA+GGG 0.463616 5_1:-35596641 Msa0729130:CDS
TTCAGAAACATGGGACACTT+TGG 0.465064 5_1:-35596291 Msa0729130:CDS
TGAATTGAATTGATGCAGTC+AGG 0.471598 5_1:-35597567 Msa0729130:five_prime_UTR
GCAGCAGATCTTATTTCAAT+GGG 0.474876 5_1:-35596322 Msa0729130:CDS
AATGCAGAATTGACAGAGGT+TGG 0.475547 5_1:+35596027 None:intergenic
AAACATTGTTCCAATCGATT+GGG 0.477015 5_1:+35595851 None:intergenic
TCGGTTACTCTCTTCATGCC+AGG 0.479429 5_1:-35595727 Msa0729130:CDS
GCTTGGCATCCTTCCTGGAA+TGG 0.479876 5_1:-35596682 Msa0729130:exon
TGGCTTCATCCACAAGTCTC+AGG 0.482093 5_1:+35596357 None:intergenic
GAAGTTGAACGACAAAGAAC+CGG 0.483634 5_1:+35597493 None:intergenic
GCCTCAAGAAATTCAAGGAA+AGG 0.484187 5_1:-35593815 Msa0729130:CDS
CCTTTGCCTCAAGAAATTCA+AGG 0.489134 5_1:-35593820 Msa0729130:CDS
GATGACACGCCTTTGATCTC+CGG 0.493928 5_1:+35593843 None:intergenic
TGTGCCATATAATAGATTGT+CGG 0.495097 5_1:-35596711 Msa0729130:intron
GATAGTCAGCAGTGATGTCT+TGG 0.496239 5_1:+35597108 None:intergenic
ATCTCTGATTTGTCAAAACC+TGG 0.497549 5_1:+35595709 None:intergenic
GTTTAAGATTAGCTTTGGAT+TGG 0.499217 5_1:-35597543 Msa0729130:five_prime_UTR
AGCGGCGAAGATAGCGGCGG+TGG 0.504443 5_1:+35597354 None:intergenic
GAACCTTTCAGCTGTTAGGT+TGG 0.507651 5_1:-35597042 Msa0729130:five_prime_UTR
ATGATGTCATATTACTGGAT+TGG 0.518193 5_1:+35595776 None:intergenic
TGAGATGAAAGCAGAAGGCA+AGG 0.520256 5_1:+35595891 None:intergenic
AGATTAGCTTTGGATTGGAT+GGG 0.521247 5_1:-35597538 Msa0729130:five_prime_UTR
ATGACTCAAGGCACACTTGG+AGG 0.523642 5_1:-35596856 Msa0729130:five_prime_UTR
CCTCAGCATAAAAGGTGAGA+AGG 0.525519 5_1:+35593720 None:intergenic
TCAAGGCACACTTGGAGGGG+TGG 0.525686 5_1:-35596851 Msa0729130:five_prime_UTR
TAGATTGTCGGAGAGGAGCT+TGG 0.527913 5_1:-35596699 Msa0729130:five_prime_UTR
TCCTTCACTCCTGAGACTTG+TGG 0.529663 5_1:-35596366 Msa0729130:CDS
TTAAAATAAATGCAGTATAG+GGG 0.532352 5_1:-35593889 Msa0729130:intron
AATTCTGCATTACGTTATTG+GGG 0.532431 5_1:-35596015 Msa0729130:CDS
ACCTTTCCTTGAATTTCTTG+AGG 0.534279 5_1:+35593814 None:intergenic
CAAGAAATTCAAGGAAAGGT+TGG 0.534618 5_1:-35593811 Msa0729130:CDS
CAAGGCACACTTGGAGGGGT+GGG 0.540818 5_1:-35596850 Msa0729130:intron
TTTCGGTACTTGCACTTGAG+AGG 0.545250 5_1:-35596650 Msa0729130:CDS
TGGTAGAAGCCGGAGATCAA+AGG 0.547294 5_1:-35593852 Msa0729130:CDS
ATTTGGTTGCCTCCTTGTGA+TGG 0.549573 5_1:-35596061 Msa0729130:CDS
TTTAGTTGAAGCAACATCCT+CGG 0.550886 5_1:+35597414 None:intergenic
GATTATTAATGTTACGGCAG+TGG 0.555143 5_1:-35593698 Msa0729130:three_prime_UTR
TTTGACGTAATAATATATGA+TGG 0.555790 5_1:-35596579 Msa0729130:CDS
TATTAATGTTACGGCAGTGG+TGG 0.560519 5_1:-35593695 Msa0729130:three_prime_UTR
TAGTAAATAGCCCAATCGAT+TGG 0.561225 5_1:-35595861 Msa0729130:CDS
TGACTCAAGGCACACTTGGA+GGG 0.565824 5_1:-35596855 Msa0729130:five_prime_UTR
GAGGAAACCTTGAGAATCAT+GGG 0.567213 5_1:-35596546 Msa0729130:CDS
CTCAGCATAAAAGGTGAGAA+GGG 0.570816 5_1:+35593721 None:intergenic
GCCTTGAGTCATATTAAGCT+GGG 0.571410 5_1:+35596867 None:intergenic
GGAGGATGAGTTCAGAAACA+TGG 0.573634 5_1:-35596301 Msa0729130:CDS
GAAATTCAAGGAAAGGTTGG+CGG 0.573892 5_1:-35593808 Msa0729130:CDS
TCCACAAGTCTCAGGAGTGA+AGG 0.574370 5_1:+35596365 None:intergenic
GCTTCCACCCATGATTCTCA+AGG 0.576164 5_1:+35596539 None:intergenic
GACTCAAGGCACACTTGGAG+GGG 0.579696 5_1:-35596854 Msa0729130:five_prime_UTR
GCAGCAGGCACTGCCAAAAG+GGG 0.580736 5_1:+35597457 None:intergenic
AAATTTCTGTGGATTTGAGA+AGG 0.582017 5_1:+35596080 None:intergenic
TTTCCAACCTAACAGCTGAA+AGG 0.590429 5_1:+35597039 None:intergenic
AATATGACTCAAGGCACACT+TGG 0.591609 5_1:-35596859 Msa0729130:five_prime_UTR
TTTAAAATATATCCGCACAT+TGG 0.592995 5_1:-35596420 Msa0729130:CDS
ACACTGTGAATAAAGATGCT+AGG 0.598622 5_1:-35595822 Msa0729130:CDS
GCCCAGCTTAATATGACTCA+AGG 0.605769 5_1:-35596868 Msa0729130:five_prime_UTR
CACTTTGGATCAAATTCTGG+AGG 0.608227 5_1:-35596276 Msa0729130:intron
AGGAGGCAACCAAATTTCTG+TGG 0.612090 5_1:+35596069 None:intergenic
ATTCTGCATTACGTTATTGG+GGG 0.613562 5_1:-35596014 Msa0729130:CDS
GCAGATCTTATTTCAATGGG+AGG 0.614942 5_1:-35596319 Msa0729130:CDS
GGACTTGAGATGAAAGCAGA+AGG 0.626478 5_1:+35595886 None:intergenic
AAATAAATGCAGTATAGGGG+AGG 0.629069 5_1:-35593886 Msa0729130:intron
GAGGATGAGTTCAGAAACAT+GGG 0.643942 5_1:-35596300 Msa0729130:CDS
CATATAATAGATTGTCGGAG+AGG 0.652359 5_1:-35596706 Msa0729130:intron
GAGATGAAAGCAGAAGGCAA+GGG 0.655584 5_1:+35595892 None:intergenic
GATTGTTAGGATCCATCACA+AGG 0.660209 5_1:+35596049 None:intergenic
TGGGTGGAAGCAGTAAAGCA+AGG 0.674055 5_1:-35596527 Msa0729130:intron
AGATTGAATCCATTCCAGGA+AGG 0.674668 5_1:+35596673 None:intergenic
TACCTGAGCGGCGAAGATAG+CGG 0.683068 5_1:+35597348 None:intergenic
GAAACCTTGAGAATCATGGG+TGG 0.699723 5_1:-35596543 Msa0729130:CDS
CTGAGCGGCGAAGATAGCGG+CGG 0.708358 5_1:+35597351 None:intergenic
ACGTAATGCAGAATTGACAG+AGG 0.717466 5_1:+35596023 None:intergenic
TAAAGTTGTACGTACCTGAG+CGG 0.750549 5_1:+35597336 None:intergenic
TGTTAGGATCCATCACAAGG+AGG 0.756186 5_1:+35596052 None:intergenic
ATATGATGGTGTCAGCAGCG+AGG 0.762833 5_1:-35596565 Msa0729130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTCTTTTGTTTTTAT+GGG + chr5_1:35595724-35595743 None:intergenic 10.0%
!!! TAATATTTCTTTTGTTTTTA+TGG + chr5_1:35595725-35595744 None:intergenic 10.0%
!!! AATATTTCTTTTGTTTTTAT+GGG + chr5_1:35595724-35595743 None:intergenic 10.0%
!!! TAATATTTCTTTTGTTTTTA+TGG + chr5_1:35595725-35595744 None:intergenic 10.0%
!!! TTTTGTTTACATAAATAAAA+TGG - chr5_1:35595912-35595931 Msa0729130:CDS 10.0%
!!! TTTTTTTTTTTTTTGTAGTT+TGG - chr5_1:35596832-35596851 Msa0729130:intron 10.0%
!!! TTTTCTATCTATATTTATGA+TGG - chr5_1:35594443-35594462 Msa0729130:intron 15.0%
!! TTTCTATCTATATTTATGAT+GGG - chr5_1:35594444-35594463 Msa0729130:intron 15.0%
!! AAACAAAAGAAATATTACTA+AGG - chr5_1:35595728-35595747 Msa0729130:CDS 15.0%
!! AAACAAAAGAAATATTACTA+AGG - chr5_1:35595728-35595747 Msa0729130:CDS 15.0%
!! AAATTTCTACTCAATAAATA+TGG + chr5_1:35597100-35597119 None:intergenic 15.0%
!!! TATTTATTGAGTAGAAATTT+TGG - chr5_1:35597100-35597119 Msa0729130:five_prime_UTR 15.0%
!!! TTTAAAATAAATGCAGTATA+GGG - chr5_1:35597356-35597375 Msa0729130:five_prime_UTR 15.0%
!! TTTGACGTAATAATATATGA+TGG - chr5_1:35594667-35594686 Msa0729130:intron 20.0%
!! ATTTGATGTCATAAGAAAAT+CGG - chr5_1:35595500-35595519 Msa0729130:intron 20.0%
!! AAATATAAAATGCATGAGAA+AGG + chr5_1:35595590-35595609 None:intergenic 20.0%
!! ATATTCTATGAGAAATAAGA+TGG - chr5_1:35595654-35595673 Msa0729130:intron 20.0%
!! ATATTCTATGAGAAATAAGA+TGG - chr5_1:35595654-35595673 Msa0729130:intron 20.0%
!!! ATATGTTTTTGTAAAATTCC+TGG - chr5_1:35595971-35595990 Msa0729130:CDS 20.0%
!! AGTTAAGAAATTTATTTACC+AGG + chr5_1:35595992-35596011 None:intergenic 20.0%
!! AGATTCCCAAAATAAAAATA+TGG + chr5_1:35596889-35596908 None:intergenic 20.0%
!! TTTACATATTATTGTTCAAC+TGG - chr5_1:35597170-35597189 Msa0729130:intron 20.0%
!!! GTTTAAAATAAATGCAGTAT+AGG - chr5_1:35597355-35597374 Msa0729130:five_prime_UTR 20.0%
!! TTAAAATAAATGCAGTATAG+GGG - chr5_1:35597357-35597376 Msa0729130:five_prime_UTR 20.0%
!!! ACTAAATTACTCACTTTTCT+CGG - chr5_1:35593849-35593868 Msa0729130:CDS 25.0%
!!! TTCAATGATAGATTAGTCTT+GGG - chr5_1:35593937-35593956 Msa0729130:intron 25.0%
! ATTGCATAATATATGCTAGA+TGG - chr5_1:35593985-35594004 Msa0729130:intron 25.0%
! TTGCATAATATATGCTAGAT+GGG - chr5_1:35593986-35594005 Msa0729130:intron 25.0%
! TAGAAATTCACGTGAATAAA+TGG + chr5_1:35594029-35594048 None:intergenic 25.0%
! TATCTACTCAATTGTAAGAT+TGG - chr5_1:35594157-35594176 Msa0729130:intron 25.0%
!! GGAATTTATTCTTTTCATCA+AGG - chr5_1:35594465-35594484 Msa0729130:intron 25.0%
!! TTTAAAATATATCCGCACAT+TGG - chr5_1:35594826-35594845 Msa0729130:intron 25.0%
! AATAAGATGGTTCTTATCTT+TGG - chr5_1:35595667-35595686 Msa0729130:intron 25.0%
!! CTTTGGTTCAAATAAAATGA+TGG - chr5_1:35595684-35595703 Msa0729130:intron 25.0%
!! TCAATTCATCATTTTCTTCA+TGG - chr5_1:35595753-35595772 Msa0729130:CDS 25.0%
! AATAAGATGGTTCTTATCTT+TGG - chr5_1:35595667-35595686 Msa0729130:intron 25.0%
!! CTTTGGTTCAAATAAAATGA+TGG - chr5_1:35595684-35595703 Msa0729130:intron 25.0%
!!! TTAACTTGCAAAATAGATGT+TGG - chr5_1:35596006-35596025 Msa0729130:CDS 25.0%
! GTTAGTTAGAAGAAGATTAT+GGG - chr5_1:35596122-35596141 Msa0729130:intron 25.0%
! GACCTTAATATTATACTGTA+TGG - chr5_1:35596854-35596873 Msa0729130:five_prime_UTR 25.0%
! CTCCATACAGTATAATATTA+AGG + chr5_1:35596859-35596878 None:intergenic 25.0%
!!! TGCACTCCATATTTTTATTT+TGG - chr5_1:35596880-35596899 Msa0729130:five_prime_UTR 25.0%
!!! GCACTCCATATTTTTATTTT+GGG - chr5_1:35596881-35596900 Msa0729130:five_prime_UTR 25.0%
! TCATTAAAGATCAAATAGCT+TGG - chr5_1:35597135-35597154 Msa0729130:five_prime_UTR 25.0%
! TTAATAATCCTCAGCATAAA+AGG + chr5_1:35597537-35597556 None:intergenic 25.0%
!! GTTTAAGATTAGCTTTGGAT+TGG - chr5_1:35593703-35593722 Msa0729130:three_prime_UTR 30.0%
!! GTTCAATGATAGATTAGTCT+TGG - chr5_1:35593936-35593955 Msa0729130:intron 30.0%
TGCATAATATATGCTAGATG+GGG - chr5_1:35593987-35594006 Msa0729130:intron 30.0%
ATATATATAGAGGGAGGAAA+TGG + chr5_1:35594256-35594275 None:intergenic 30.0%
CACAAGGTGATATATATAGA+GGG + chr5_1:35594265-35594284 None:intergenic 30.0%
ACACAAGGTGATATATATAG+AGG + chr5_1:35594266-35594285 None:intergenic 30.0%
!!! CCTTGTGTACATTTTGATTT+CGG - chr5_1:35594278-35594297 Msa0729130:intron 30.0%
TCTATTATATGGCACAAAAG+AGG + chr5_1:35594531-35594550 None:intergenic 30.0%
TGTGCCATATAATAGATTGT+CGG - chr5_1:35594535-35594554 Msa0729130:intron 30.0%
!! TGGAATGGATTCAATCTTTT+CGG - chr5_1:35594579-35594598 Msa0729130:intron 30.0%
TCAAACGAAAGAAAATGTCA+AGG + chr5_1:35594784-35594803 None:intergenic 30.0%
! GTTTGATACTTCGATTTTGT+AGG - chr5_1:35594798-35594817 Msa0729130:intron 30.0%
GAAAACTGAAATTGGTAGAT+TGG - chr5_1:35594853-35594872 Msa0729130:intron 30.0%
!! TCTGCTGCTATTTATTTTCA+TGG + chr5_1:35594912-35594931 None:intergenic 30.0%
AAATTTCTGTGGATTTGAGA+AGG + chr5_1:35595169-35595188 None:intergenic 30.0%
TTCTCAAATCCACAGAAATT+TGG - chr5_1:35595168-35595187 Msa0729130:intron 30.0%
TCAATTCTGCATTACGTTAT+TGG - chr5_1:35595229-35595248 Msa0729130:intron 30.0%
CAATTCTGCATTACGTTATT+GGG - chr5_1:35595230-35595249 Msa0729130:intron 30.0%
AATTCTGCATTACGTTATTG+GGG - chr5_1:35595231-35595250 Msa0729130:intron 30.0%
AAACATTGTTCCAATCGATT+GGG + chr5_1:35595398-35595417 None:intergenic 30.0%
AAAACATTGTTCCAATCGAT+TGG + chr5_1:35595399-35595418 None:intergenic 30.0%
ATGATGTCATATTACTGGAT+TGG + chr5_1:35595473-35595492 None:intergenic 30.0%
! AACTGATGATGTCATATTAC+TGG + chr5_1:35595478-35595497 None:intergenic 30.0%
TATAAAATGCATGAGAAAGG+AGG + chr5_1:35595587-35595606 None:intergenic 30.0%
CCATGAAGAATATGGTAAAA+AGG + chr5_1:35595621-35595640 None:intergenic 30.0%
! CCTTTTTACCATATTCTTCA+TGG - chr5_1:35595618-35595637 Msa0729130:intron 30.0%
! GGTTAGTTAGAAGAAGATTA+TGG - chr5_1:35596121-35596140 Msa0729130:intron 30.0%
ATGGGACTGTTATAAATAGT+AGG - chr5_1:35596140-35596159 Msa0729130:intron 30.0%
GACTGTTATAAATAGTAGGA+GGG - chr5_1:35596144-35596163 Msa0729130:intron 30.0%
GGGATTGTATACCTAAATTA+GGG + chr5_1:35596364-35596383 None:intergenic 30.0%
ATCATGAGAGAATATTTGGT+GGG + chr5_1:35596385-35596404 None:intergenic 30.0%
AATCATGAGAGAATATTTGG+TGG + chr5_1:35596386-35596405 None:intergenic 30.0%
ACCAAATATTCTCTCATGAT+TGG - chr5_1:35596385-35596404 Msa0729130:CDS 30.0%
! TTCAAGAGATCAGTATCTTT+TGG - chr5_1:35596644-35596663 Msa0729130:CDS 30.0%
AAAAGACCTACAGACTTAAA+GGG + chr5_1:35596814-35596833 None:intergenic 30.0%
AAAAAGACCTACAGACTTAA+AGG + chr5_1:35596815-35596834 None:intergenic 30.0%
! TGGGAATCTTTAATTTAGAG+TGG - chr5_1:35596900-35596919 Msa0729130:five_prime_UTR 30.0%
! GGGAATCTTTAATTTAGAGT+GGG - chr5_1:35596901-35596920 Msa0729130:five_prime_UTR 30.0%
TAATTACAAGACTTCTGTCT+TGG + chr5_1:35597473-35597492 None:intergenic 30.0%
GCTGAGGATTATTAATGTTA+CGG - chr5_1:35597542-35597561 Msa0729130:five_prime_UTR 30.0%
TGAATTGAATTGATGCAGTC+AGG - chr5_1:35593679-35593698 Msa0729130:three_prime_UTR 35.0%
!! AAGATTAGCTTTGGATTGGA+TGG - chr5_1:35593707-35593726 Msa0729130:three_prime_UTR 35.0%
!! AGATTAGCTTTGGATTGGAT+GGG - chr5_1:35593708-35593727 Msa0729130:three_prime_UTR 35.0%
AATTTCGAGCTTCACATTTC+CGG - chr5_1:35593734-35593753 Msa0729130:three_prime_UTR 35.0%
TTTAGTTGAAGCAACATCCT+CGG + chr5_1:35593835-35593854 None:intergenic 35.0%
! ACCTCCAATTTTCATTGGTA+GGG - chr5_1:35593960-35593979 Msa0729130:intron 35.0%
ATGTCCCTACCAATGAAAAT+TGG + chr5_1:35593967-35593986 None:intergenic 35.0%
! CACGTGAATTTCTAGACATT+AGG - chr5_1:35594035-35594054 Msa0729130:intron 35.0%
! GATGTTTCAGCATTTTGCAA+TGG - chr5_1:35594084-35594103 Msa0729130:intron 35.0%
AAGGTGATATATATAGAGGG+AGG + chr5_1:35594262-35594281 None:intergenic 35.0%
CCGAAATCAAAATGTACACA+AGG + chr5_1:35594281-35594300 None:intergenic 35.0%
! TGCTTGCTTCAGAAGTTTTA+GGG + chr5_1:35594355-35594374 None:intergenic 35.0%
CTCTCCGACAATCTATTATA+TGG + chr5_1:35594542-35594561 None:intergenic 35.0%
CATATAATAGATTGTCGGAG+AGG - chr5_1:35594540-35594559 Msa0729130:intron 35.0%
GAAAAGATTGAATCCATTCC+AGG + chr5_1:35594580-35594599 None:intergenic 35.0%
!! TCTTGTTGACTCTTTGAAGA+TGG + chr5_1:35594643-35594662 None:intergenic 35.0%
TTGGCTGAGAAAACTGAAAT+TGG - chr5_1:35594845-35594864 Msa0729130:intron 35.0%
! AGCAGCAGATCTTATTTCAA+TGG - chr5_1:35594923-35594942 Msa0729130:intron 35.0%
! GCAGCAGATCTTATTTCAAT+GGG - chr5_1:35594924-35594943 Msa0729130:intron 35.0%
TGGCTACATAGATCAAATGA+CGG + chr5_1:35595044-35595063 None:intergenic 35.0%
TGATTATGTGTTGTCCAGAA+AGG - chr5_1:35595135-35595154 Msa0729130:intron 35.0%
ATTCTGCATTACGTTATTGG+GGG - chr5_1:35595232-35595251 Msa0729130:intron 35.0%
!!! CTTTCGAATGATTCTGGTTT+TGG + chr5_1:35595315-35595334 None:intergenic 35.0%
TTTGCTCTTTCGAATGATTC+TGG + chr5_1:35595321-35595340 None:intergenic 35.0%
TCGATTGGGCTATTTACTAA+TGG + chr5_1:35595384-35595403 None:intergenic 35.0%
TAGTAAATAGCCCAATCGAT+TGG - chr5_1:35595385-35595404 Msa0729130:intron 35.0%
! CGATTGGAACAATGTTTTAC+TGG - chr5_1:35595401-35595420 Msa0729130:intron 35.0%
ACACTGTGAATAAAGATGCT+AGG - chr5_1:35595424-35595443 Msa0729130:intron 35.0%
! ATCTCTGATTTGTCAAAACC+TGG + chr5_1:35595540-35595559 None:intergenic 35.0%
AATGAGTGCCATGAAGAATA+TGG + chr5_1:35595629-35595648 None:intergenic 35.0%
GGACTGTTATAAATAGTAGG+AGG - chr5_1:35596143-35596162 Msa0729130:intron 35.0%
TCCATCCTTTCTCCATTTAT+AGG - chr5_1:35596294-35596313 Msa0729130:CDS 35.0%
GGGGATTGTATACCTAAATT+AGG + chr5_1:35596365-35596384 None:intergenic 35.0%
! TCATGAGAGAATATTTGGTG+GGG + chr5_1:35596384-35596403 None:intergenic 35.0%
GCCAATCATGAGAGAATATT+TGG + chr5_1:35596389-35596408 None:intergenic 35.0%
TCTCATGATTGGCAATGATT+AGG - chr5_1:35596396-35596415 Msa0729130:CDS 35.0%
! TATGTTTGGTACTGAAGGTT+TGG + chr5_1:35596671-35596690 None:intergenic 35.0%
! TTCCTTTTAGGCTTGATACT+CGG + chr5_1:35596698-35596717 None:intergenic 35.0%
GTATCAAGCCTAAAAGGAAA+AGG - chr5_1:35596699-35596718 Msa0729130:five_prime_UTR 35.0%
!! TTAGAGCACCTTTTCCTTTT+AGG + chr5_1:35596710-35596729 None:intergenic 35.0%
! TAATTTAGAGTGGGAGAGAA+TGG - chr5_1:35596910-35596929 Msa0729130:five_prime_UTR 35.0%
CAATTTCTGTACTTCTCACA+TGG - chr5_1:35597269-35597288 Msa0729130:intron 35.0%
! CAAGTTTTTGCATTATGCTC+TGG - chr5_1:35597294-35597313 Msa0729130:intron 35.0%
AAATAAATGCAGTATAGGGG+AGG - chr5_1:35597360-35597379 Msa0729130:five_prime_UTR 35.0%
CTTGAATTTCTTGAGGCAAA+GGG + chr5_1:35597428-35597447 None:intergenic 35.0%
ACCTTTCCTTGAATTTCTTG+AGG + chr5_1:35597435-35597454 None:intergenic 35.0%
CAAGAAATTCAAGGAAAGGT+TGG - chr5_1:35597435-35597454 Msa0729130:five_prime_UTR 35.0%
AAGACTTCTGTCTTGGAATT+TGG + chr5_1:35597466-35597485 None:intergenic 35.0%
GATTATTAATGTTACGGCAG+TGG - chr5_1:35597548-35597567 Msa0729130:five_prime_UTR 35.0%
CTGTACATTTGTGCATGAAT+TGG - chr5_1:35597583-35597602 Msa0729130:five_prime_UTR 35.0%
!! CAGGCGTTTAAGATTAGCTT+TGG - chr5_1:35593698-35593717 Msa0729130:three_prime_UTR 40.0%
GAAGTTGAACGACAAAGAAC+CGG + chr5_1:35593756-35593775 None:intergenic 40.0%
! TGTTCGAACTAAACCCCTTT+TGG - chr5_1:35593776-35593795 Msa0729130:CDS 40.0%
TTCTTCTTCTTCTTCTTCCG+AGG - chr5_1:35593815-35593834 Msa0729130:CDS 40.0%
!! TTACTCACTTTTCTCGGCAA+AGG - chr5_1:35593855-35593874 Msa0729130:CDS 40.0%
TAAAGTTGTACGTACCTGAG+CGG + chr5_1:35593913-35593932 None:intergenic 40.0%
! TTGGGACCTCCAATTTTCAT+TGG - chr5_1:35593955-35593974 Msa0729130:intron 40.0%
! GACCTCCAATTTTCATTGGT+AGG - chr5_1:35593959-35593978 Msa0729130:intron 40.0%
TCCCTACCAATGAAAATTGG+AGG + chr5_1:35593964-35593983 None:intergenic 40.0%
CGTGAATAAATGGAGTGTAC+AGG + chr5_1:35594019-35594038 None:intergenic 40.0%
! TTTCAGCATTTTGCAATGGC+TGG - chr5_1:35594088-35594107 Msa0729130:intron 40.0%
TTTCCAACCTAACAGCTGAA+AGG + chr5_1:35594210-35594229 None:intergenic 40.0%
!! GCTTGCTTCAGAAGTTTTAG+GGG + chr5_1:35594354-35594373 None:intergenic 40.0%
! CTGCTTGCTTCAGAAGTTTT+AGG + chr5_1:35594356-35594375 None:intergenic 40.0%
GCCTTGAGTCATATTAAGCT+GGG + chr5_1:35594382-35594401 None:intergenic 40.0%
TGCCTTGAGTCATATTAAGC+TGG + chr5_1:35594383-35594402 None:intergenic 40.0%
AATATGACTCAAGGCACACT+TGG - chr5_1:35594387-35594406 Msa0729130:intron 40.0%
AAGGTTTCAAACTGCAGTTG+CGG - chr5_1:35594484-35594503 Msa0729130:intron 40.0%
AGATTGAATCCATTCCAGGA+AGG + chr5_1:35594576-35594595 None:intergenic 40.0%
GAGGAAACCTTGAGAATCAT+GGG - chr5_1:35594700-35594719 Msa0729130:intron 40.0%
! GAAGCAGTAAAGCAAGGTTT+TGG - chr5_1:35594725-35594744 Msa0729130:intron 40.0%
! GCAGATCTTATTTCAATGGG+AGG - chr5_1:35594927-35594946 Msa0729130:intron 40.0%
GAGGATGAGTTCAGAAACAT+GGG - chr5_1:35594946-35594965 Msa0729130:intron 40.0%
TTCAGAAACATGGGACACTT+TGG - chr5_1:35594955-35594974 Msa0729130:intron 40.0%
GGACACTTTGGATCAAATTC+TGG - chr5_1:35594967-35594986 Msa0729130:intron 40.0%
CACTTTGGATCAAATTCTGG+AGG - chr5_1:35594970-35594989 Msa0729130:intron 40.0%
CGATCTTTATCCACTGTGTA+GGG + chr5_1:35595068-35595087 None:intergenic 40.0%
CCTACACAGTGGATAAAGAT+CGG - chr5_1:35595066-35595085 Msa0729130:intron 40.0%
GATTGTTAGGATCCATCACA+AGG + chr5_1:35595200-35595219 None:intergenic 40.0%
TTGACAGAGGTTGGATTGTT+AGG + chr5_1:35595213-35595232 None:intergenic 40.0%
AATGCAGAATTGACAGAGGT+TGG + chr5_1:35595222-35595241 None:intergenic 40.0%
ACGTAATGCAGAATTGACAG+AGG + chr5_1:35595226-35595245 None:intergenic 40.0%
TAACAAACTAACCACCTAGC+AGG - chr5_1:35596100-35596119 Msa0729130:intron 40.0%
CTTCTTCTAACTAACCTGCT+AGG + chr5_1:35596117-35596136 None:intergenic 40.0%
TAAATAGTAGGAGGGAAGAG+AGG - chr5_1:35596152-35596171 Msa0729130:intron 40.0%
CTTGTCTGCAAAACAAGTCT+AGG - chr5_1:35596192-35596211 Msa0729130:intron 40.0%
GCCTATAAATGGAGAAAGGA+TGG + chr5_1:35596298-35596317 None:intergenic 40.0%
GAACGCCTATAAATGGAGAA+AGG + chr5_1:35596302-35596321 None:intergenic 40.0%
AGAATCGGAACGCCTATAAA+TGG + chr5_1:35596309-35596328 None:intergenic 40.0%
TTTATAGGCGTTCCGATTCT+AGG - chr5_1:35596309-35596328 Msa0729130:CDS 40.0%
TTATAGGCGTTCCGATTCTA+GGG - chr5_1:35596310-35596329 Msa0729130:CDS 40.0%
TGATTGGCAATGATTAGGTC+AGG - chr5_1:35596401-35596420 Msa0729130:CDS 40.0%
CATATTGTTCAGTACTCAGC+CGG + chr5_1:35596495-35596514 None:intergenic 40.0%
!! GGCTGAGTACTGAACAATAT+GGG - chr5_1:35596494-35596513 Msa0729130:intron 40.0%
!! GCTGAGTACTGAACAATATG+GGG - chr5_1:35596495-35596514 Msa0729130:intron 40.0%
AAGAGGAGTGGTGACTTAAA+GGG + chr5_1:35596547-35596566 None:intergenic 40.0%
AAAGAGGAGTGGTGACTTAA+AGG + chr5_1:35596548-35596567 None:intergenic 40.0%
AAGCTTTACACAAAGAGGAG+TGG + chr5_1:35596559-35596578 None:intergenic 40.0%
GACTGACCATGACAAATGTT+GGG + chr5_1:35596583-35596602 None:intergenic 40.0%
AGACTGACCATGACAAATGT+TGG + chr5_1:35596584-35596603 None:intergenic 40.0%
AGTCTCTAGTCTAGTGATTC+TGG - chr5_1:35596599-35596618 Msa0729130:CDS 40.0%
! TCCTTTTAGGCTTGATACTC+GGG + chr5_1:35596697-35596716 None:intergenic 40.0%
!! AAAGGAAAAGGTGCTCTAAC+TGG - chr5_1:35596711-35596730 Msa0729130:intron 40.0%
TAAGTGCTCTTTGAGCCTTA+AGG + chr5_1:35596960-35596979 None:intergenic 40.0%
TTTACATTTACCTCCCACCA+AGG - chr5_1:35596988-35597007 Msa0729130:intron 40.0%
TTACATTTACCTCCCACCAA+GGG - chr5_1:35596989-35597008 Msa0729130:intron 40.0%
TTACCACTAGGCCAAACAAT+TGG - chr5_1:35597060-35597079 Msa0729130:five_prime_UTR 40.0%
GCAACTCAACTCCAATTGTT+TGG + chr5_1:35597074-35597093 None:intergenic 40.0%
CCTTGAATTTCTTGAGGCAA+AGG + chr5_1:35597429-35597448 None:intergenic 40.0%
CCTTTGCCTCAAGAAATTCA+AGG - chr5_1:35597426-35597445 Msa0729130:five_prime_UTR 40.0%
GCCTCAAGAAATTCAAGGAA+AGG - chr5_1:35597431-35597450 Msa0729130:five_prime_UTR 40.0%
GAAATTCAAGGAAAGGTTGG+CGG - chr5_1:35597438-35597457 Msa0729130:five_prime_UTR 40.0%
CTCAGCATAAAAGGTGAGAA+GGG + chr5_1:35597528-35597547 None:intergenic 40.0%
TATTAATGTTACGGCAGTGG+TGG - chr5_1:35597551-35597570 Msa0729130:five_prime_UTR 40.0%
GATAGTCAGCAGTGATGTCT+TGG + chr5_1:35594141-35594160 None:intergenic 45.0%
GCAAGAACCTTTCAGCTGTT+AGG - chr5_1:35594200-35594219 Msa0729130:intron 45.0%
GAACCTTTCAGCTGTTAGGT+TGG - chr5_1:35594204-35594223 Msa0729130:intron 45.0%
TGGAAAAGCGACACACACTT+TGG + chr5_1:35594236-35594255 None:intergenic 45.0%
GCCCAGCTTAATATGACTCA+AGG - chr5_1:35594378-35594397 Msa0729130:intron 45.0%
! TCAAACTGCAGTTGCGGTTT+TGG - chr5_1:35594490-35594509 Msa0729130:intron 45.0%
TTTCGGTACTTGCACTTGAG+AGG - chr5_1:35594596-35594615 Msa0729130:intron 45.0%
TTGCACTTGAGAGGCTTGTA+GGG - chr5_1:35594605-35594624 Msa0729130:intron 45.0%
! TGAGAGGCTTGTAGGGTTTT+TGG - chr5_1:35594612-35594631 Msa0729130:intron 45.0%
! GAGAGGCTTGTAGGGTTTTT+GGG - chr5_1:35594613-35594632 Msa0729130:intron 45.0%
! AGAGGCTTGTAGGGTTTTTG+GGG - chr5_1:35594614-35594633 Msa0729130:intron 45.0%
CGAGGAAACCTTGAGAATCA+TGG - chr5_1:35594699-35594718 Msa0729130:intron 45.0%
GAAACCTTGAGAATCATGGG+TGG - chr5_1:35594703-35594722 Msa0729130:intron 45.0%
! CAGTTTTCTCAGCCAATGTG+CGG + chr5_1:35594841-35594860 None:intergenic 45.0%
GGAGGATGAGTTCAGAAACA+TGG - chr5_1:35594945-35594964 Msa0729130:intron 45.0%
CTTTATCCACTGTGTAGGGT+TGG + chr5_1:35595064-35595083 None:intergenic 45.0%
CCGATCTTTATCCACTGTGT+AGG + chr5_1:35595069-35595088 None:intergenic 45.0%
ACACAGTGGATAAAGATCGG+TGG - chr5_1:35595069-35595088 Msa0729130:intron 45.0%
AGAAGGCAGAAGATCCTTTC+TGG + chr5_1:35595152-35595171 None:intergenic 45.0%
AGGAGGCAACCAAATTTCTG+TGG + chr5_1:35595180-35595199 None:intergenic 45.0%
ATTTGGTTGCCTCCTTGTGA+TGG - chr5_1:35595185-35595204 Msa0729130:intron 45.0%
TGTTAGGATCCATCACAAGG+AGG + chr5_1:35595197-35595216 None:intergenic 45.0%
!!! TTCTGGTTTTGGTTGCTGAG+TGG + chr5_1:35595304-35595323 None:intergenic 45.0%
GAGATGAAAGCAGAAGGCAA+GGG + chr5_1:35595357-35595376 None:intergenic 45.0%
TGAGATGAAAGCAGAAGGCA+AGG + chr5_1:35595358-35595377 None:intergenic 45.0%
GGACTTGAGATGAAAGCAGA+AGG + chr5_1:35595363-35595382 None:intergenic 45.0%
TAGTTACCCTGTGAGTGGAT+AGG - chr5_1:35596067-35596086 Msa0729130:CDS 45.0%
AGTTACCCTGTGAGTGGATA+GGG - chr5_1:35596068-35596087 Msa0729130:CDS 45.0%
CTTCTAACTAACCTGCTAGG+TGG + chr5_1:35596114-35596133 None:intergenic 45.0%
ACAAGTCTAGGTTGCCATCA+AGG - chr5_1:35596204-35596223 Msa0729130:intron 45.0%
CAAGTCTAGGTTGCCATCAA+GGG - chr5_1:35596205-35596224 Msa0729130:intron 45.0%
! GGCCAATGGTTGGTCAAATT+GGG - chr5_1:35596226-35596245 Msa0729130:intron 45.0%
CTCCCAATTTGACCAACCAT+TGG + chr5_1:35596231-35596250 None:intergenic 45.0%
GTTGAGCCTGACAAAAGAAG+GGG + chr5_1:35596342-35596361 None:intergenic 45.0%
GGTTGAGCCTGACAAAAGAA+GGG + chr5_1:35596343-35596362 None:intergenic 45.0%
GTCAGGCTCAACCCTAATTT+AGG - chr5_1:35596350-35596369 Msa0729130:CDS 45.0%
AGGTACAGAAGATGACCTTG+TGG - chr5_1:35596421-35596440 Msa0729130:CDS 45.0%
!! ACCTTGTGGCTTGTTGCATT+TGG - chr5_1:35596435-35596454 Msa0729130:intron 45.0%
TCCAAATGCAACAAGCCACA+AGG + chr5_1:35596439-35596458 None:intergenic 45.0%
! GGAAGAAGCCTTTTTACCGT+TGG - chr5_1:35596456-35596475 Msa0729130:intron 45.0%
!! CGGCTGAGTACTGAACAATA+TGG - chr5_1:35596493-35596512 Msa0729130:intron 45.0%
!! GAGTACTGAACAATATGGGG+AGG - chr5_1:35596498-35596517 Msa0729130:intron 45.0%
AGAGGAGTGGTGACTTAAAG+GGG + chr5_1:35596546-35596565 None:intergenic 45.0%
TGGGCAAGCTTTACACAAAG+AGG + chr5_1:35596564-35596583 None:intergenic 45.0%
AGCTTGCCCAACATTTGTCA+TGG - chr5_1:35596574-35596593 Msa0729130:CDS 45.0%
ATTCTGGTCAGTCATCCTCT+GGG - chr5_1:35596615-35596634 Msa0729130:CDS 45.0%
! GGGGTTATGTTTGGTACTGA+AGG + chr5_1:35596676-35596695 None:intergenic 45.0%
TGATACTCGGGGGTTATGTT+TGG + chr5_1:35596685-35596704 None:intergenic 45.0%
! CTTTTAGGCTTGATACTCGG+GGG + chr5_1:35596695-35596714 None:intergenic 45.0%
! CCTTTTAGGCTTGATACTCG+GGG + chr5_1:35596696-35596715 None:intergenic 45.0%
TTGGGTACCAAAGGTTTGGA+CGG + chr5_1:35596737-35596756 None:intergenic 45.0%
GCTATTGGGTACCAAAGGTT+TGG + chr5_1:35596741-35596760 None:intergenic 45.0%
AACCTTTGGTACCCAATAGC+AGG - chr5_1:35596741-35596760 Msa0729130:intron 45.0%
ACCTTTGGTACCCAATAGCA+GGG - chr5_1:35596742-35596761 Msa0729130:intron 45.0%
AGGGTAGGTGTGGTAAAGTT+TGG - chr5_1:35596761-35596780 Msa0729130:intron 45.0%
GGGTAGGTGTGGTAAAGTTT+GGG - chr5_1:35596762-35596781 Msa0729130:intron 45.0%
AGTTTGGGAGCCATTTGACT+AGG - chr5_1:35596777-35596796 Msa0729130:intron 45.0%
GTTTGGGAGCCATTTGACTA+GGG - chr5_1:35596778-35596797 Msa0729130:intron 45.0%
TGCAGACCCTTTAAGTCTGT+AGG - chr5_1:35596805-35596824 Msa0729130:intron 45.0%
CCTTAAGGTCTTCTCAACCT+TGG + chr5_1:35596945-35596964 None:intergenic 45.0%
CCAAGGTTGAGAAGACCTTA+AGG - chr5_1:35596942-35596961 Msa0729130:intron 45.0%
TGGCCTAGTGGTAAAAAACC+AGG + chr5_1:35597054-35597073 None:intergenic 45.0%
ACTCCAATTGTTTGGCCTAG+TGG + chr5_1:35597066-35597085 None:intergenic 45.0%
! TCTGAGCTTTTGGTAGAAGC+CGG - chr5_1:35597384-35597403 Msa0729130:five_prime_UTR 45.0%
CCTCAGCATAAAAGGTGAGA+AGG + chr5_1:35597529-35597548 None:intergenic 45.0%
! CCTTCTCACCTTTTATGCTG+AGG - chr5_1:35597526-35597545 Msa0729130:five_prime_UTR 45.0%
GAAGAAGAAGAAGCAGCAGC+AGG + chr5_1:35593807-35593826 None:intergenic 50.0%
!! CTCACTTTTCTCGGCAAAGG+TGG - chr5_1:35593858-35593877 Msa0729130:CDS 50.0%
ATGACTCAAGGCACACTTGG+AGG - chr5_1:35594390-35594409 Msa0729130:intron 50.0%
TGACTCAAGGCACACTTGGA+GGG - chr5_1:35594391-35594410 Msa0729130:intron 50.0%
TAGATTGTCGGAGAGGAGCT+TGG - chr5_1:35594547-35594566 Msa0729130:intron 50.0%
CTTGCACTTGAGAGGCTTGT+AGG - chr5_1:35594604-35594623 Msa0729130:intron 50.0%
! ATATGATGGTGTCAGCAGCG+AGG - chr5_1:35594681-35594700 Msa0729130:intron 50.0%
GCTTCCACCCATGATTCTCA+AGG + chr5_1:35594710-35594729 None:intergenic 50.0%
TGGGTGGAAGCAGTAAAGCA+AGG - chr5_1:35594719-35594738 Msa0729130:intron 50.0%
TCCTTCACTCCTGAGACTTG+TGG - chr5_1:35594880-35594899 Msa0729130:intron 50.0%
TCCACAAGTCTCAGGAGTGA+AGG + chr5_1:35594884-35594903 None:intergenic 50.0%
TGGCTTCATCCACAAGTCTC+AGG + chr5_1:35594892-35594911 None:intergenic 50.0%
ATGTAGCCAACCCTACACAG+TGG - chr5_1:35595055-35595074 Msa0729130:intron 50.0%
CAAGCTGGTGCTCAAGTTTC+AGG - chr5_1:35595264-35595283 Msa0729130:intron 50.0%
! GCTCAAGTTTCAGGCGCTTT+TGG - chr5_1:35595273-35595292 Msa0729130:intron 50.0%
TCGGTTACTCTCTTCATGCC+AGG - chr5_1:35595519-35595538 Msa0729130:intron 50.0%
ACGCTTAGTTACCCTGTGAG+TGG - chr5_1:35596062-35596081 Msa0729130:CDS 50.0%
ATTCGCCCTATCCACTCACA+GGG + chr5_1:35596076-35596095 None:intergenic 50.0%
AATTCGCCCTATCCACTCAC+AGG + chr5_1:35596077-35596096 None:intergenic 50.0%
! GGGCCAATGGTTGGTCAAAT+TGG - chr5_1:35596225-35596244 Msa0729130:intron 50.0%
! TCTGGTCCCCTTCTTTTGTC+AGG - chr5_1:35596333-35596352 Msa0729130:CDS 50.0%
GGGTTGAGCCTGACAAAAGA+AGG + chr5_1:35596344-35596363 None:intergenic 50.0%
GGGAAGCTCCAACGGTAAAA+AGG + chr5_1:35596467-35596486 None:intergenic 50.0%
! TCAGTACTCAGCCGGTTCAA+GGG + chr5_1:35596487-35596506 None:intergenic 50.0%
! TTCAGTACTCAGCCGGTTCA+AGG + chr5_1:35596488-35596507 None:intergenic 50.0%
ATGGGGAGGATTGTGACTGT+AGG - chr5_1:35596512-35596531 Msa0729130:intron 50.0%
GAGTGGTGACTTAAAGGGGT+AGG + chr5_1:35596542-35596561 None:intergenic 50.0%
GATTCTGGTCAGTCATCCTC+TGG - chr5_1:35596614-35596633 Msa0729130:CDS 50.0%
TTCTGGTCAGTCATCCTCTG+GGG - chr5_1:35596616-35596635 Msa0729130:CDS 50.0%
TCTCTTGAACATACCCCCAG+AGG + chr5_1:35596633-35596652 None:intergenic 50.0%
CCCCGAGTATCAAGCCTAAA+AGG - chr5_1:35596693-35596712 Msa0729130:five_prime_UTR 50.0%
TAACTGGCCGTCCAAACCTT+TGG - chr5_1:35596727-35596746 Msa0729130:intron 50.0%
ACCCTGCTATTGGGTACCAA+AGG + chr5_1:35596746-35596765 None:intergenic 50.0%
TTGGTACCCAATAGCAGGGT+AGG - chr5_1:35596746-35596765 Msa0729130:intron 50.0%
ACCACACCTACCCTGCTATT+GGG + chr5_1:35596755-35596774 None:intergenic 50.0%
TACCACACCTACCCTGCTAT+TGG + chr5_1:35596756-35596775 None:intergenic 50.0%
CTGCAACCTCCCTAGTCAAA+TGG + chr5_1:35596790-35596809 None:intergenic 50.0%
AGGTCTTCTCAACCTTGGAC+CGG + chr5_1:35596940-35596959 None:intergenic 50.0%
!! GGCTCAAAGAGCACTTACGA+AGG - chr5_1:35596963-35596982 Msa0729130:intron 50.0%
AAAAAACCAGGCCCTAGACC+AGG + chr5_1:35597042-35597061 None:intergenic 50.0%
!!! GGGCCTGGTTTTTTACCACT+AGG - chr5_1:35597048-35597067 Msa0729130:five_prime_UTR 50.0%
! TAGGGGAGGATCTGAGCTTT+TGG - chr5_1:35597374-35597393 Msa0729130:five_prime_UTR 50.0%
TGGTAGAAGCCGGAGATCAA+AGG - chr5_1:35597394-35597413 Msa0729130:five_prime_UTR 50.0%
GATGACACGCCTTTGATCTC+CGG + chr5_1:35597406-35597425 None:intergenic 50.0%
! AGCAGCAGGCACTGCCAAAA+GGG + chr5_1:35593793-35593812 None:intergenic 55.0%
TTTCTCGGCAAAGGTGGCTC+TGG - chr5_1:35593864-35593883 Msa0729130:CDS 55.0%
TACCTGAGCGGCGAAGATAG+CGG + chr5_1:35593901-35593920 None:intergenic 55.0%
GACTCAAGGCACACTTGGAG+GGG - chr5_1:35594392-35594411 Msa0729130:intron 55.0%
GCTTGGCATCCTTCCTGGAA+TGG - chr5_1:35594564-35594583 Msa0729130:intron 55.0%
! TGGGGGTGTGCAATTCAAGC+TGG - chr5_1:35595249-35595268 Msa0729130:intron 55.0%
AGTAGGAGGGAAGAGAGGAG+AGG - chr5_1:35596157-35596176 Msa0729130:intron 55.0%
GGAAGAGAGGAGAGGATGCT+TGG - chr5_1:35596165-35596184 Msa0729130:intron 55.0%
AGGTTGCCATCAAGGGCCAA+TGG - chr5_1:35596212-35596231 Msa0729130:intron 55.0%
TGCCATCAAGGGCCAATGGT+TGG - chr5_1:35596216-35596235 Msa0729130:intron 55.0%
GACCAACCATTGGCCCTTGA+TGG + chr5_1:35596221-35596240 None:intergenic 55.0%
AGGGGACCAGACCCTAGAAT+CGG + chr5_1:35596324-35596343 None:intergenic 55.0%
CGGTTCAAGGGAAGCTCCAA+CGG + chr5_1:35596475-35596494 None:intergenic 55.0%
CGTTGGAGCTTCCCTTGAAC+CGG - chr5_1:35596473-35596492 Msa0729130:intron 55.0%
TCTGGTCAGTCATCCTCTGG+GGG - chr5_1:35596617-35596636 Msa0729130:CDS 55.0%
ACCCAATAGCAGGGTAGGTG+TGG - chr5_1:35596751-35596770 Msa0729130:intron 55.0%
TGGGAGCCATTTGACTAGGG+AGG - chr5_1:35596781-35596800 Msa0729130:intron 55.0%
AGTGGGAGAGAATGGTGACC+CGG - chr5_1:35596918-35596937 Msa0729130:intron 55.0%
GGTCTTCTCAACCTTGGACC+GGG + chr5_1:35596939-35596958 None:intergenic 55.0%
AACCTGGAACCTCCTGGTCT+AGG - chr5_1:35597027-35597046 Msa0729130:intron 55.0%
ACCTGGAACCTCCTGGTCTA+GGG - chr5_1:35597028-35597047 Msa0729130:intron 55.0%
! GCAGCAGGCACTGCCAAAAG+GGG + chr5_1:35593792-35593811 None:intergenic 60.0%
! CAGCAGCAGGCACTGCCAAA+AGG + chr5_1:35593794-35593813 None:intergenic 60.0%
TCAAGGCACACTTGGAGGGG+TGG - chr5_1:35594395-35594414 Msa0729130:intron 60.0%
CAAGGCACACTTGGAGGGGT+GGG - chr5_1:35594396-35594415 Msa0729130:intron 60.0%
GAGGAGCTTGGCATCCTTCC+TGG - chr5_1:35594559-35594578 Msa0729130:intron 60.0%
!! GGCGTTCCGATTCTAGGGTC+TGG - chr5_1:35596315-35596334 Msa0729130:CDS 60.0%
GAGAATGGTGACCCGGTCCA+AGG - chr5_1:35596925-35596944 Msa0729130:intron 60.0%
TCCAGGTTTGAGCCCCGCTA+AGG + chr5_1:35597015-35597034 None:intergenic 60.0%
GGCTCAAACCTGGAACCTCC+TGG - chr5_1:35597021-35597040 Msa0729130:intron 60.0%
AAACCAGGCCCTAGACCAGG+AGG + chr5_1:35597039-35597058 None:intergenic 60.0%
! CTGAGCGGCGAAGATAGCGG+CGG + chr5_1:35593898-35593917 None:intergenic 65.0%
CCTCCCACCAAGGGCCTTAG+CGG - chr5_1:35596998-35597017 Msa0729130:intron 65.0%
CTCCCACCAAGGGCCTTAGC+GGG - chr5_1:35596999-35597018 Msa0729130:intron 65.0%
TCCCACCAAGGGCCTTAGCG+GGG - chr5_1:35597000-35597019 Msa0729130:intron 65.0%
TTGAGCCCCGCTAAGGCCCT+TGG + chr5_1:35597008-35597027 None:intergenic 65.0%
GCCTTAGCGGGGCTCAAACC+TGG - chr5_1:35597011-35597030 Msa0729130:intron 65.0%
GCCCTAGACCAGGAGGTTCC+AGG + chr5_1:35597032-35597051 None:intergenic 65.0%
! GAACCTCCTGGTCTAGGGCC+TGG - chr5_1:35597033-35597052 Msa0729130:five_prime_UTR 65.0%
! AGCGGCGAAGATAGCGGCGG+TGG + chr5_1:35593895-35593914 None:intergenic 70.0%
CGCCGCTATCTTCGCCGCTC+AGG - chr5_1:35593896-35593915 Msa0729130:intron 70.0%
CCGCTAAGGCCCTTGGTGGG+AGG + chr5_1:35597001-35597020 None:intergenic 70.0%
GCCCCGCTAAGGCCCTTGGT+GGG + chr5_1:35597004-35597023 None:intergenic 70.0%
AGCCCCGCTAAGGCCCTTGG+TGG + chr5_1:35597005-35597024 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 35593645 35597623 35593645 ID=Msa0729130;Name=Msa0729130
chr5_1 mRNA 35593645 35597623 35593645 ID=Msa0729130-mRNA-1;Parent=Msa0729130;Name=Msa0729130-mRNA-1;_AED=0.07;_eAED=0.07;_QI=529|1|1|1|0.83|0.85|7|120|293
chr5_1 exon 35593645 35593896 35593645 ID=Msa0729130-mRNA-1:exon:11031;Parent=Msa0729130-mRNA-1
chr5_1 exon 35595696 35596115 35595696 ID=Msa0729130-mRNA-1:exon:11030;Parent=Msa0729130-mRNA-1
chr5_1 exon 35596277 35596448 35596277 ID=Msa0729130-mRNA-1:exon:11029;Parent=Msa0729130-mRNA-1
chr5_1 exon 35596528 35596718 35596528 ID=Msa0729130-mRNA-1:exon:11028;Parent=Msa0729130-mRNA-1
chr5_1 exon 35596851 35596929 35596851 ID=Msa0729130-mRNA-1:exon:11027;Parent=Msa0729130-mRNA-1
chr5_1 exon 35597031 35597174 35597031 ID=Msa0729130-mRNA-1:exon:11026;Parent=Msa0729130-mRNA-1
chr5_1 exon 35597351 35597623 35597351 ID=Msa0729130-mRNA-1:exon:11025;Parent=Msa0729130-mRNA-1
chr5_1 five_prime_UTR 35597351 35597623 35597351 ID=Msa0729130-mRNA-1:five_prime_utr;Parent=Msa0729130-mRNA-1
chr5_1 five_prime_UTR 35597031 35597174 35597031 ID=Msa0729130-mRNA-1:five_prime_utr;Parent=Msa0729130-mRNA-1
chr5_1 five_prime_UTR 35596851 35596929 35596851 ID=Msa0729130-mRNA-1:five_prime_utr;Parent=Msa0729130-mRNA-1
chr5_1 five_prime_UTR 35596686 35596718 35596686 ID=Msa0729130-mRNA-1:five_prime_utr;Parent=Msa0729130-mRNA-1
chr5_1 CDS 35596528 35596685 35596528 ID=Msa0729130-mRNA-1:cds;Parent=Msa0729130-mRNA-1
chr5_1 CDS 35596277 35596448 35596277 ID=Msa0729130-mRNA-1:cds;Parent=Msa0729130-mRNA-1
chr5_1 CDS 35595696 35596115 35595696 ID=Msa0729130-mRNA-1:cds;Parent=Msa0729130-mRNA-1
chr5_1 CDS 35593765 35593896 35593765 ID=Msa0729130-mRNA-1:cds;Parent=Msa0729130-mRNA-1
chr5_1 three_prime_UTR 35593645 35593764 35593645 ID=Msa0729130-mRNA-1:three_prime_utr;Parent=Msa0729130-mRNA-1
Gene Sequence

>Msa0729130

ATGGATTCAATCTTTTCGGTACTTGCACTTGAGAGGCTTGTAGGGTTTTTGGGGATGCCATCTTCAAAGAGTCAACAAGATAAATTTGACGTAATAATATATGATGGTGTCAGCAGCGAGGAAACCTTGAGAATCATGGGTGGAAGCAGTAAAGCAAGGTTGTATTTAAAATATATCCGCACATTGGCTGAGAAAACTGAAATTGGTAGATTGGCTGCTCCTTCACTCCTGAGACTTGTGGATGAAGCCATGAAAATAAATAGCAGCAGATCTTATTTCAATGGGAGGATGAGTTCAGAAACATGGGACACTTTGGATCAAATTCTGGAGAAAGGATCTTCTGCCTTCTCAAATCCACAGAAATTTGGTTGCCTCCTTGTGATGGATCCTAACAATCCAACCTCTGTCAATTCTGCATTACGTTATTGGGGGTGTGCAATTCAAGCTGGTGCTCAAGTTTCAGGCGCTTTTGGAATTTCCACTCAGCAACCAAAACCAGAATCATTCGAAAGAGCAAAGAAAGATCTTTCTCCCTTGCCTTCTGCTTTCATCTCAAGTCCATTAGTAAATAGCCCAATCGATTGGAACAATGTTTTACTGGACACTGTGAATAAAGATGCTAGGCAATTTCTTACTTCACTATCAAGCCAATCCAGTAATATGACATCATCAGTTAAATTTGATGTCATAAGAAAATCGGTTACTCTCTTCATGCCAGGTTTTGACAAATCAGAGATTAAGCTATATCAATATAGGGGAGGATCTGAGCTTTTGGTAGAAGCCGGAGATCAAAGGCGTGTCATCCCTTTGCCTCAAGAAATTCAAGGAAAGGTTGGCGGAGCCAAATTCCAAGACAGAAGTCTTGTAATTACATTAAAATAA

Protein sequence

>Msa0729130

MDSIFSVLALERLVGFLGMPSSKSQQDKFDVIIYDGVSSEETLRIMGGSSKARLYLKYIRTLAEKTEIGRLAAPSLLRLVDEAMKINSSRSYFNGRMSSETWDTLDQILEKGSSAFSNPQKFGCLLVMDPNNPTSVNSALRYWGCAIQAGAQVSGAFGISTQQPKPESFERAKKDLSPLPSAFISSPLVNSPIDWNNVLLDTVNKDARQFLTSLSSQSSNMTSSVKFDVIRKSVTLFMPGFDKSEIKLYQYRGGSELLVEAGDQRRVIPLPQEIQGKVGGAKFQDRSLVITLK*