AlfalfaGEDB | MS.gene21473

M. sativa cultivar XinJiangDaYe / MS.gene21473

KEGG: K09015
GO: GO:0006790 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0044237 GO:0044249 GO:0051186 GO:0051188 GO:0071840
PFAM: PF01458.20 PF19295.2

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21473.t1	XP_003611469.1	89.5	476	48	1	1	476	1	474	1.30E-232	815.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21473.t1	Q9LQK7	58.2	467	185	5	13	471	11	475	6.6e-148	525.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21473.t1	G7JZX3	89.5	476	48	1	1	476	1	474	9.6e-233	815.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene21473	0.81702	4.09E-52	-1.69E-46
MS.gene049217	MS.gene21473	0.861932	7.25E-64	-1.69E-46
MS.gene049222	MS.gene21473	0.822554	2.23E-53	-1.69E-46
MS.gene049351	MS.gene21473	0.838229	3.26E-57	-1.69E-46
MS.gene049356	MS.gene21473	0.848217	7.06E-60	-1.69E-46
MS.gene049369	MS.gene21473	0.846923	1.60E-59	-1.69E-46
MS.gene049427	MS.gene21473	0.843778	1.14E-58	-1.69E-46
MS.gene049491	MS.gene21473	0.800541	1.37E-48	-1.69E-46
MS.gene049609	MS.gene21473	0.817768	2.78E-52	-1.69E-46
MS.gene049805	MS.gene21473	0.834053	3.74E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21473.t1	MTR_5g014290	94.958	476	22	1	1	476	1	474	0.0	884
MS.gene21473.t1	MTR_8g019500	25.559	313	201	9	173	471	243	537	2.74e-18	87.8
MS.gene21473.t1	MTR_7g038720	25.240	313	202	9	173	471	244	538	5.58e-18	87.0
MS.gene21473.t1	MTR_7g030030	25.240	313	202	9	173	471	244	538	5.58e-18	87.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21473.t1	AT1G32500	58.635	469	180	6	13	471	11	475	0.0	543
MS.gene21473.t1	AT4G04770	26.263	297	194	7	173	456	254	538	4.57e-19	90.5

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Find 124 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAGCTTCTCTAAGACTG+TGG	0.574255	5.3:+7464126	None:intergenic
AAGTCAGATTAAAAGTTTAT+TGG	0.227386	5.3:-7461328	MS.gene21473:CDS
AATCTCTTCTCTCTTCTCCA+TGG	0.503098	5.3:-7464100	MS.gene21473:CDS
AATCTTCATATCAAACAACT+AGG	0.623363	5.3:-7462491	MS.gene21473:CDS
AATGCACTTATGAATCTGAC+GGG	0.586814	5.3:+7462367	None:intergenic
AATGGGTGCACCGGATTTGA+CGG	0.505675	5.3:-7463784	MS.gene21473:CDS
AATTGTGATCATTTACGAGA+TGG	0.545673	5.3:+7461303	None:intergenic
ACAATCAACGTCGAAAATCT+CGG	0.501795	5.3:-7463925	MS.gene21473:CDS
ACAGAAGTTGGCTTTGTTCC+AGG	0.315039	5.3:+7461463	None:intergenic
ACATAAACCACCGTCAAATC+CGG	0.439129	5.3:+7463774	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTGCAAGTGATTCCATT+AGG	+	chr5.3:7462659-7462678	None:intergenic	30.0%
AATAGTAAAACTGGGTCTAA+AGG	-	chr5.3:7462352-7462371	MS.gene21473:CDS	30.0%
ATATAGTTGAGGAGTTTGAA+GGG	-	chr5.3:7462017-7462036	MS.gene21473:intron	30.0%
ATGATGAAGAAGAAGATGAT+GGG	+	chr5.3:7461358-7461377	None:intergenic	30.0%
ATGGAATGAAAAGGTTATGT+TGG	-	chr5.3:7462329-7462348	MS.gene21473:CDS	30.0%
CACACGAAATGCAAAAATAA+AGG	+	chr5.3:7462925-7462944	None:intergenic	30.0%
CTATCTCTAATGGAAGAATT+AGG	+	chr5.3:7464280-7464299	None:intergenic	30.0%
GCAATTTATCTTCTAGTATC+TGG	-	chr5.3:7462672-7462691	MS.gene21473:intron	30.0%
GCTAACTATATACAAAGGAA+GGG	-	chr5.3:7462860-7462879	MS.gene21473:intron	30.0%
GGATATACGTACAATAACAA+GGG	+	chr5.3:7463734-7463753	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	7461311	7464345	7461311	ID=MS.gene21473
chr5.3	mRNA	7461311	7464345	7461311	ID=MS.gene21473.t1;Parent=MS.gene21473
chr5.3	exon	7463485	7464345	7463485	ID=MS.gene21473.t1.exon1;Parent=MS.gene21473.t1
chr5.3	CDS	7463485	7464345	7463485	ID=cds.MS.gene21473.t1;Parent=MS.gene21473.t1
chr5.3	exon	7462314	7462573	7462314	ID=MS.gene21473.t1.exon2;Parent=MS.gene21473.t1
chr5.3	CDS	7462314	7462573	7462314	ID=cds.MS.gene21473.t1;Parent=MS.gene21473.t1
chr5.3	exon	7461311	7461620	7461311	ID=MS.gene21473.t1.exon3;Parent=MS.gene21473.t1
chr5.3	CDS	7461311	7461620	7461311	ID=cds.MS.gene21473.t1;Parent=MS.gene21473.t1

Gene Sequence

>MS.gene21473

ATGAGTGGCATAGCATTAACACCCGCAGCATTCAACTCCATAATCCCATCATCTTCTTCTTCATCATCGAAATCTCAAAAACTGATCAGAACCAAAACCAGAGTCACATTCAACAACGCAATTTCAATCTCTTCAGACCCATTCATTCTCGACCTCGCTGAAACCTTAGAAGACTCCGTCCCTACACCACAACCTCTCCACAGTCTTAGAGAAGCTTCTTCTCAATCTCTTCTCTCTTCTCCATGGCCTTCTCGAAAACACGAACCTTTTCGCTTCAACGACTTCTCCTTCCTCCGTTCTTCCCAAATCCTCCCCGCCCCAATCCCAACCACCACCACCACCACCACCGCAACCGATCAGTTCCCCTGCCACGTCAGCATCGTTGACGGACATTTCATACAATCAACGTCGAAAATCTCGGAGTTTTCAGATGGGGTTTACGTTGGTAATTTGTCAAATTTGAACGGTGCTGTTGCTAAGAGGGTTTTGGAATTGGTATCTGGATTGGACGGTGGAGATTTATTTTGGTCGATTAATGGAATGGGTGCACCGGATTTGACGGTGGTTTATGTACCGGAGGGTGTTCAGGTTGAAACTCCGGTTCATTTGGGTTATGTATCGTTGCAGAGTAGTAAGGAAGGTGAGAATGAGATGTATATATCGAATCCGAGGGTTTTGGTGGTGGTGGAGAATGATGGTGAGGTTGATATAGTTGAGGAGTTTGAAGGGAATGATAATGAGTGTTATTGGAGTAATGCTGTTTTGGAGGTTGTGATTGGGGAAGGTGGCAAGGTTAGACATTCTTATGTTCAGAATCAGTCGTTGCTTGCCGCGCATATCAAATGGACTTCTGTTCGTCAGGTTGATCGTCTTTTTCATGCAATTTATGCTTCAAATATCAAATTTTTTATGCATGTTTAGTGTTTGTTTAGCTTAGAGTTCAAGTTCAGAGATTACGATTTTCAATTAATTTGATTTGAATTCAATTGAGTTTGAACTGAGTATGAATTTATTGTTTATGGAATGAAAAGGTTATGTTGGAATAGTAAAACTGGGTCTAAAGGAAAGAGGTAAATAAATGCACACAAGAACACAAACATTGATCGCTGAGTTCAACGAATTGTACCTATGACTACTTCTTTGATAACGAAGGGGCTGCATTGTAGTTTTTCTATTATGCAATTCTTAGTGTTATAGGTATAATGTTGCGGTTAAATACTACAATTCGAATGCAAGATTACCCCACTATGCCCGTTGTGCTTTTAGCTCTACTCCCTCTGCTATGCACGAGCGATTGCCCACTTATCGGTGAATATGAGCTGTACACAACCAGTCACTACCTGGACCTAATGGAATCACTTGCAATTTATCTTCTAGTATCTGGTAGAAGTAGTGGCATCATTTTGTCATTAGGTTCGTTTTACACTAGTACAAGTATATTGCCTTTATAATCTATAACAACTATTTACTTCAAAAACACTTATTTTCTATCGAGCTTTGCTATTTAGTGCAAAAATGTTCTTATGGACTTTTGACGAAGAAGATAATGGCTAACTATATACAAAGGAAGGGCAATCTAGTTAGGATAGGAAATTAGTTGTATAAAAATAACCTTTATTTTTGCATTTCGTGTGCTGATTGTTTTGTAACAAACAACATTTTGATTATTTTGAACAAACAGCATTTTCTTTTTCATTTTTGAGAAGTTACGCAAGAGGGGATATGTAGAAAAAATTTGACATGATTGGTTTGTGATTGTTAAACATTTACAGGAAGCATCTAGTACATATGAGCTTACAGAAGTAAGCACAGGAGGCAAACTTGGAAGGCACAATCTTCATATCAAACAACTAGGTCCGGACACAGTGACAGAGTTATCAACTTTGCACTTGTCTGTTGGTAATCAAACACAGGATCTTCACAGTAGTCTTGTATTGGATCATCCAAGGGGTTATTCCCGTCAGATTCATAAGTGCATTGTGGCTCATTCACAGGGACAAGCAGTTTTTGATGGAAACGTCAAGGTTAACAGGTAATTCTTTCTTTTGCACAACAATACAAGAGTGGATTTAGGCCAATTTTCGATTAGTTTCTAACAACTCACAAGAGCTTCTCAATTCAAATAAGTATCTAATATCCATTTATGAAGAACCGAAGAAGTCCTTACAATTGTATATATGTTTACGGAGAAATTAACGGAAAGAGTTTATGAAACAATTCATATGCTGAAACTAATTTCACCTGTCTTGCTATGGATTGATACTCAGTTATTGTACTTTTTTTTGTTCTGAAACAGCCAATGCTAATTTTGTTAGTAATTGTTAGCATTAATTATGCTGGGAGTAGGAATCGAACTCCCAACCTCCTTAGCACTCCACTCTTTAACTTCCCCACCCCAACCACCAAACAAACCTTATATACCCTTGTTATTGTACGTATATCCAAACTGCCTTTTAGTCTTTTATGTAGGAATGTGCTTTTATGTATCAAGAATGGAAAATTCTATGCATGCTTCACTTTTACTCTCTTGATTTAATGTTGTGTTTCTGATGCTGATTGAGGACTGAAATCCCCACAATATAATCTAATGACTTAACGAGTTTTAGTTACATCTAATTGCTATAAATTTTTATTTATTGAGCTTGGACAGGTGGTAATTGTTTACTAATGTCTTGTATTTCATCACATAGCCACTTTATATCACTAATACACTATTCTTGTTTAGGTATGCTCAGCAGACAGATGCTGGACAGTTATCAAGAAGCCTTCTTCTTGAACCTCGTGCAACTGTAAATGTTAAACCAAATCTCCAAATCATTGCTGATGACGTCAAGTGTTCCCATGGAGCTGCAATAAGTGACCTGGAACAAAGCCAACTTCTGTATTTCCAAGCACGTGGCATTGATTCAGAAACAGCTAGAAGGGTTCTAATTTTTGCCTTTGGAGGGGAAGTGATAGATAAGTTTCCTAATTCTTCCATTAGAGATAGAGTACGAAGTCAGATTAAAAGTTTATTGGATCCATCTCGTAAATGA

Protein sequence

>MS.gene21473.t1

MSGIALTPAAFNSIIPSSSSSSSKSQKLIRTKTRVTFNNAISISSDPFILDLAETLEDSVPTPQPLHSLREASSQSLLSSPWPSRKHEPFRFNDFSFLRSSQILPAPIPTTTTTTTATDQFPCHVSIVDGHFIQSTSKISEFSDGVYVGNLSNLNGAVAKRVLELVSGLDGGDLFWSINGMGAPDLTVVYVPEGVQVETPVHLGYVSLQSSKEGENEMYISNPRVLVVVENDGEVDIVEEFEGNDNECYWSNAVLEVVIGEGGKVRHSYVQNQSLLAAHIKWTSVRQEASSTYELTEVSTGGKLGRHNLHIKQLGPDTVTELSTLHLSVGNQTQDLHSSLVLDHPRGYSRQIHKCIVAHSQGQAVFDGNVKVNRYAQQTDAGQLSRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEQSQLLYFQARGIDSETARRVLIFAFGGEVIDKFPNSSIRDRVRSQIKSLLDPSRK