Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21628.t1 | XP_003611045.2 | 89 | 354 | 36 | 1 | 1 | 354 | 1 | 351 | 1.80E-157 | 565.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21628.t1 | Q94AX5 | 78.2 | 257 | 54 | 2 | 98 | 353 | 114 | 369 | 3.4e-96 | 353.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21628.t1 | G7KAQ7 | 89.0 | 354 | 36 | 1 | 1 | 354 | 1 | 351 | 1.3e-157 | 565.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene21628 | 0.870467 | 1.43E-66 | -1.69E-46 |
| MS.gene049171 | MS.gene21628 | 0.817837 | 2.68E-52 | -1.69E-46 |
| MS.gene049217 | MS.gene21628 | 0.848536 | 5.76E-60 | -1.69E-46 |
| MS.gene049222 | MS.gene21628 | 0.841738 | 3.96E-58 | -1.69E-46 |
| MS.gene049285 | MS.gene21628 | 0.835369 | 1.75E-56 | -1.69E-46 |
| MS.gene049320 | MS.gene21628 | 0.826873 | 2.14E-54 | -1.69E-46 |
| MS.gene04939 | MS.gene21628 | 0.803391 | 3.57E-49 | -1.69E-46 |
| MS.gene049427 | MS.gene21628 | 0.884264 | 2.22E-71 | -1.69E-46 |
| MS.gene049491 | MS.gene21628 | 0.816075 | 6.67E-52 | -1.69E-46 |
| MS.gene049609 | MS.gene21628 | 0.862782 | 3.97E-64 | -1.69E-46 |
| MS.gene049661 | MS.gene21628 | 0.816685 | 4.87E-52 | -1.69E-46 |
| MS.gene049662 | MS.gene21628 | 0.803308 | 3.71E-49 | -1.69E-46 |
| MS.gene049760 | MS.gene21628 | 0.80783 | 4.17E-50 | -1.69E-46 |
| MS.gene049805 | MS.gene21628 | 0.874406 | 6.92E-68 | -1.69E-46 |
| MS.gene050076 | MS.gene21628 | 0.870845 | 1.07E-66 | -1.69E-46 |
| MS.gene050163 | MS.gene21628 | 0.847909 | 8.58E-60 | -1.69E-46 |
| MS.gene050165 | MS.gene21628 | 0.819298 | 1.25E-52 | -1.69E-46 |
| MS.gene050301 | MS.gene21628 | 0.802343 | 5.87E-49 | -1.69E-46 |
| MS.gene050333 | MS.gene21628 | 0.810179 | 1.31E-50 | -1.69E-46 |
| MS.gene050432 | MS.gene21628 | 0.848191 | 7.17E-60 | -1.69E-46 |
| MS.gene050475 | MS.gene21628 | -0.812112 | 4.99E-51 | -1.69E-46 |
| MS.gene050518 | MS.gene21628 | 0.818259 | 2.15E-52 | -1.69E-46 |
| MS.gene050538 | MS.gene21628 | 0.824445 | 8.04E-54 | -1.69E-46 |
| MS.gene050541 | MS.gene21628 | -0.807553 | 4.78E-50 | -1.69E-46 |
| MS.gene050593 | MS.gene21628 | 0.86675 | 2.27E-65 | -1.69E-46 |
| MS.gene050670 | MS.gene21628 | 0.842195 | 3.00E-58 | -1.69E-46 |
| MS.gene050675 | MS.gene21628 | 0.826672 | 2.39E-54 | -1.69E-46 |
| MS.gene050699 | MS.gene21628 | 0.835883 | 1.29E-56 | -1.69E-46 |
| MS.gene050747 | MS.gene21628 | 0.855902 | 4.62E-62 | -1.69E-46 |
| MS.gene050767 | MS.gene21628 | 0.842015 | 3.35E-58 | -1.69E-46 |
| MS.gene050770 | MS.gene21628 | 0.844451 | 7.50E-59 | -1.69E-46 |
| MS.gene050772 | MS.gene21628 | 0.854899 | 9.05E-62 | -1.69E-46 |
| MS.gene050781 | MS.gene21628 | 0.84361 | 1.26E-58 | -1.69E-46 |
| MS.gene050783 | MS.gene21628 | 0.860538 | 1.93E-63 | -1.69E-46 |
| MS.gene05080 | MS.gene21628 | 0.800353 | 1.50E-48 | -1.69E-46 |
| MS.gene050812 | MS.gene21628 | 0.820519 | 6.57E-53 | -1.69E-46 |
| MS.gene050950 | MS.gene21628 | 0.85042 | 1.72E-60 | -1.69E-46 |
| MS.gene05100 | MS.gene21628 | 0.831742 | 1.40E-55 | -1.69E-46 |
| MS.gene05101 | MS.gene21628 | 0.847418 | 1.17E-59 | -1.69E-46 |
| MS.gene05105 | MS.gene21628 | 0.871331 | 7.42E-67 | -1.69E-46 |
| MS.gene051228 | MS.gene21628 | 0.821711 | 3.49E-53 | -1.69E-46 |
| MS.gene051387 | MS.gene21628 | 0.876217 | 1.66E-68 | -1.69E-46 |
| MS.gene051582 | MS.gene21628 | 0.839232 | 1.79E-57 | -1.69E-46 |
| MS.gene051666 | MS.gene21628 | 0.854462 | 1.21E-61 | -1.69E-46 |
| MS.gene051694 | MS.gene21628 | 0.811973 | 5.36E-51 | -1.69E-46 |
| MS.gene051810 | MS.gene21628 | 0.828726 | 7.66E-55 | -1.69E-46 |
| MS.gene051858 | MS.gene21628 | 0.814403 | 1.57E-51 | -1.69E-46 |
| MS.gene052078 | MS.gene21628 | 0.805383 | 1.37E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene21628 | 0.806315 | 8.73E-50 | -1.69E-46 |
| MS.gene052271 | MS.gene21628 | 0.852574 | 4.22E-61 | -1.69E-46 |
| MS.gene052290 | MS.gene21628 | 0.843171 | 1.65E-58 | -1.69E-46 |
| MS.gene052310 | MS.gene21628 | 0.854687 | 1.04E-61 | -1.69E-46 |
| MS.gene052322 | MS.gene21628 | 0.810445 | 1.15E-50 | -1.69E-46 |
| MS.gene052326 | MS.gene21628 | 0.814006 | 1.92E-51 | -1.69E-46 |
| MS.gene052379 | MS.gene21628 | 0.855584 | 5.72E-62 | -1.69E-46 |
| MS.gene052421 | MS.gene21628 | 0.862139 | 6.26E-64 | -1.69E-46 |
| MS.gene052481 | MS.gene21628 | 0.826013 | 3.42E-54 | -1.69E-46 |
| MS.gene052484 | MS.gene21628 | 0.833105 | 6.45E-56 | -1.69E-46 |
| MS.gene052501 | MS.gene21628 | 0.826256 | 3.00E-54 | -1.69E-46 |
| MS.gene052503 | MS.gene21628 | 0.800494 | 1.40E-48 | -1.69E-46 |
| MS.gene052505 | MS.gene21628 | 0.837564 | 4.83E-57 | -1.69E-46 |
| MS.gene052615 | MS.gene21628 | 0.863378 | 2.60E-64 | -1.69E-46 |
| MS.gene053009 | MS.gene21628 | 0.83552 | 1.60E-56 | -1.69E-46 |
| MS.gene053103 | MS.gene21628 | 0.860598 | 1.85E-63 | -1.69E-46 |
| MS.gene053104 | MS.gene21628 | 0.860649 | 1.78E-63 | -1.69E-46 |
| MS.gene053107 | MS.gene21628 | 0.840061 | 1.09E-57 | -1.69E-46 |
| MS.gene053207 | MS.gene21628 | 0.861135 | 1.27E-63 | -1.69E-46 |
| MS.gene053209 | MS.gene21628 | 0.815098 | 1.10E-51 | -1.69E-46 |
| MS.gene053213 | MS.gene21628 | 0.869925 | 2.15E-66 | -1.69E-46 |
| MS.gene053286 | MS.gene21628 | 0.859172 | 4.97E-63 | -1.69E-46 |
| MS.gene053322 | MS.gene21628 | 0.885385 | 8.51E-72 | -1.69E-46 |
| MS.gene053436 | MS.gene21628 | 0.810165 | 1.32E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene21628 | 0.839575 | 1.46E-57 | -1.69E-46 |
| MS.gene053579 | MS.gene21628 | 0.83465 | 2.65E-56 | -1.69E-46 |
| MS.gene053632 | MS.gene21628 | 0.872319 | 3.48E-67 | -1.69E-46 |
| MS.gene053915 | MS.gene21628 | 0.839126 | 1.91E-57 | -1.69E-46 |
| MS.gene054123 | MS.gene21628 | 0.803175 | 3.95E-49 | -1.69E-46 |
| MS.gene054376 | MS.gene21628 | 0.8561 | 4.04E-62 | -1.69E-46 |
| MS.gene054600 | MS.gene21628 | 0.83886 | 2.24E-57 | -1.69E-46 |
| MS.gene054642 | MS.gene21628 | 0.853724 | 1.98E-61 | -1.69E-46 |
| MS.gene054802 | MS.gene21628 | 0.852361 | 4.86E-61 | -1.69E-46 |
| MS.gene054803 | MS.gene21628 | 0.852738 | 3.79E-61 | -1.69E-46 |
| MS.gene054804 | MS.gene21628 | 0.854835 | 9.45E-62 | -1.69E-46 |
| MS.gene054927 | MS.gene21628 | 0.834428 | 3.02E-56 | -1.69E-46 |
| MS.gene05505 | MS.gene21628 | 0.846903 | 1.62E-59 | -1.69E-46 |
| MS.gene055116 | MS.gene21628 | 0.837332 | 5.53E-57 | -1.69E-46 |
| MS.gene055206 | MS.gene21628 | 0.837007 | 6.70E-57 | -1.69E-46 |
| MS.gene055254 | MS.gene21628 | 0.810355 | 1.20E-50 | -1.69E-46 |
| MS.gene055277 | MS.gene21628 | 0.826044 | 3.37E-54 | -1.69E-46 |
| MS.gene055289 | MS.gene21628 | 0.824355 | 8.44E-54 | -1.69E-46 |
| MS.gene055362 | MS.gene21628 | 0.817022 | 4.09E-52 | -1.69E-46 |
| MS.gene055397 | MS.gene21628 | 0.848877 | 4.63E-60 | -1.69E-46 |
| MS.gene055412 | MS.gene21628 | 0.851907 | 6.54E-61 | -1.69E-46 |
| MS.gene055499 | MS.gene21628 | 0.879089 | 1.66E-69 | -1.69E-46 |
| MS.gene055502 | MS.gene21628 | 0.847679 | 9.93E-60 | -1.69E-46 |
| MS.gene055605 | MS.gene21628 | 0.803932 | 2.75E-49 | -1.69E-46 |
| MS.gene055647 | MS.gene21628 | 0.873177 | 1.80E-67 | -1.69E-46 |
| MS.gene055722 | MS.gene21628 | 0.819258 | 1.28E-52 | -1.69E-46 |
| MS.gene05592 | MS.gene21628 | 0.851662 | 7.67E-61 | -1.69E-46 |
| MS.gene055941 | MS.gene21628 | 0.831067 | 2.06E-55 | -1.69E-46 |
| MS.gene056040 | MS.gene21628 | 0.813014 | 3.17E-51 | -1.69E-46 |
| MS.gene056083 | MS.gene21628 | 0.844889 | 5.72E-59 | -1.69E-46 |
| MS.gene056374 | MS.gene21628 | 0.822396 | 2.42E-53 | -1.69E-46 |
| MS.gene056407 | MS.gene21628 | 0.84886 | 4.68E-60 | -1.69E-46 |
| MS.gene056511 | MS.gene21628 | 0.830316 | 3.15E-55 | -1.69E-46 |
| MS.gene056609 | MS.gene21628 | 0.827913 | 1.20E-54 | -1.69E-46 |
| MS.gene056657 | MS.gene21628 | 0.838852 | 2.25E-57 | -1.69E-46 |
| MS.gene056796 | MS.gene21628 | 0.808291 | 3.33E-50 | -1.69E-46 |
| MS.gene057011 | MS.gene21628 | 0.873898 | 1.03E-67 | -1.69E-46 |
| MS.gene05702 | MS.gene21628 | 0.839575 | 1.46E-57 | -1.69E-46 |
| MS.gene057076 | MS.gene21628 | 0.832842 | 7.51E-56 | -1.69E-46 |
| MS.gene057123 | MS.gene21628 | 0.843663 | 1.22E-58 | -1.69E-46 |
| MS.gene057124 | MS.gene21628 | 0.812695 | 3.72E-51 | -1.69E-46 |
| MS.gene057129 | MS.gene21628 | 0.880175 | 6.81E-70 | -1.69E-46 |
| MS.gene057146 | MS.gene21628 | 0.893211 | 7.77E-75 | -1.69E-46 |
| MS.gene057196 | MS.gene21628 | 0.803923 | 2.76E-49 | -1.69E-46 |
| MS.gene057295 | MS.gene21628 | 0.80743 | 5.08E-50 | -1.69E-46 |
| MS.gene057331 | MS.gene21628 | 0.838587 | 2.63E-57 | -1.69E-46 |
| MS.gene057416 | MS.gene21628 | 0.903377 | 3.70E-79 | -1.69E-46 |
| MS.gene057658 | MS.gene21628 | 0.810447 | 1.15E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene21628 | 0.803458 | 3.45E-49 | -1.69E-46 |
| MS.gene057823 | MS.gene21628 | 0.801629 | 8.23E-49 | -1.69E-46 |
| MS.gene057831 | MS.gene21628 | 0.827406 | 1.59E-54 | -1.69E-46 |
| MS.gene058019 | MS.gene21628 | 0.895372 | 1.02E-75 | -1.69E-46 |
| MS.gene058082 | MS.gene21628 | 0.800403 | 1.47E-48 | -1.69E-46 |
| MS.gene058130 | MS.gene21628 | 0.819555 | 1.09E-52 | -1.69E-46 |
| MS.gene058233 | MS.gene21628 | 0.856647 | 2.79E-62 | -1.69E-46 |
| MS.gene058293 | MS.gene21628 | 0.833302 | 5.77E-56 | -1.69E-46 |
| MS.gene058419 | MS.gene21628 | 0.858429 | 8.29E-63 | -1.69E-46 |
| MS.gene058544 | MS.gene21628 | 0.855365 | 6.63E-62 | -1.69E-46 |
| MS.gene058660 | MS.gene21628 | 0.869482 | 3.00E-66 | -1.69E-46 |
| MS.gene058723 | MS.gene21628 | 0.802157 | 6.41E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene21628 | 0.802622 | 5.14E-49 | -1.69E-46 |
| MS.gene05883 | MS.gene21628 | 0.849612 | 2.89E-60 | -1.69E-46 |
| MS.gene059023 | MS.gene21628 | 0.806698 | 7.25E-50 | -1.69E-46 |
| MS.gene059029 | MS.gene21628 | 0.839027 | 2.03E-57 | -1.69E-46 |
| MS.gene059141 | MS.gene21628 | 0.802003 | 6.89E-49 | -1.69E-46 |
| MS.gene05934 | MS.gene21628 | 0.854128 | 1.51E-61 | -1.69E-46 |
| MS.gene059455 | MS.gene21628 | 0.825986 | 3.47E-54 | -1.69E-46 |
| MS.gene059536 | MS.gene21628 | 0.865538 | 5.49E-65 | -1.69E-46 |
| MS.gene059597 | MS.gene21628 | 0.823047 | 1.71E-53 | -1.69E-46 |
| MS.gene059676 | MS.gene21628 | 0.848128 | 7.46E-60 | -1.69E-46 |
| MS.gene059677 | MS.gene21628 | 0.841764 | 3.90E-58 | -1.69E-46 |
| MS.gene059688 | MS.gene21628 | 0.868145 | 8.12E-66 | -1.69E-46 |
| MS.gene059692 | MS.gene21628 | 0.86754 | 1.27E-65 | -1.69E-46 |
| MS.gene059695 | MS.gene21628 | 0.867857 | 1.00E-65 | -1.69E-46 |
| MS.gene059711 | MS.gene21628 | 0.802911 | 4.48E-49 | -1.69E-46 |
| MS.gene059718 | MS.gene21628 | 0.845356 | 4.27E-59 | -1.69E-46 |
| MS.gene059756 | MS.gene21628 | 0.822592 | 2.18E-53 | -1.69E-46 |
| MS.gene059902 | MS.gene21628 | 0.815717 | 8.01E-52 | -1.69E-46 |
| MS.gene059960 | MS.gene21628 | 0.890398 | 1.02E-73 | -1.69E-46 |
| MS.gene060403 | MS.gene21628 | 0.839819 | 1.26E-57 | -1.69E-46 |
| MS.gene060675 | MS.gene21628 | 0.813349 | 2.68E-51 | -1.69E-46 |
| MS.gene060804 | MS.gene21628 | 0.863336 | 2.68E-64 | -1.69E-46 |
| MS.gene060818 | MS.gene21628 | 0.830889 | 2.28E-55 | -1.69E-46 |
| MS.gene060835 | MS.gene21628 | 0.830712 | 2.52E-55 | -1.69E-46 |
| MS.gene06092 | MS.gene21628 | 0.85955 | 3.83E-63 | -1.69E-46 |
| MS.gene061041 | MS.gene21628 | 0.826123 | 3.22E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene21628 | 0.808129 | 3.60E-50 | -1.69E-46 |
| MS.gene061051 | MS.gene21628 | -0.810061 | 1.39E-50 | -1.69E-46 |
| MS.gene061150 | MS.gene21628 | 0.845344 | 4.31E-59 | -1.69E-46 |
| MS.gene061200 | MS.gene21628 | 0.881136 | 3.08E-70 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21628.t1 | MTR_5g009810 | 92.373 | 354 | 24 | 1 | 1 | 354 | 1 | 351 | 0.0 | 602 |
| MS.gene21628.t1 | MTR_1g046730 | 45.217 | 230 | 94 | 5 | 140 | 352 | 150 | 364 | 7.11e-52 | 176 |
| MS.gene21628.t1 | MTR_7g079850 | 36.842 | 209 | 115 | 4 | 148 | 350 | 82 | 279 | 3.31e-28 | 111 |
| MS.gene21628.t1 | MTR_1g111390 | 35.135 | 222 | 118 | 5 | 141 | 345 | 7 | 219 | 7.55e-27 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21628.t1 | AT1G64150 | 62.108 | 351 | 110 | 7 | 8 | 353 | 37 | 369 | 1.21e-121 | 355 |
| MS.gene21628.t1 | AT4G13590 | 44.395 | 223 | 108 | 5 | 139 | 352 | 143 | 358 | 1.16e-51 | 176 |
| MS.gene21628.t1 | AT4G13590 | 44.395 | 223 | 108 | 5 | 139 | 352 | 143 | 358 | 1.19e-51 | 175 |
| MS.gene21628.t1 | AT5G36290 | 36.150 | 213 | 120 | 3 | 144 | 350 | 87 | 289 | 1.98e-29 | 115 |
| MS.gene21628.t1 | AT5G36290 | 36.150 | 213 | 120 | 3 | 144 | 350 | 87 | 289 | 1.98e-29 | 115 |
| MS.gene21628.t1 | AT1G68650 | 34.842 | 221 | 131 | 3 | 135 | 345 | 1 | 218 | 1.04e-26 | 106 |
| MS.gene21628.t1 | AT1G25520 | 33.929 | 224 | 119 | 6 | 141 | 345 | 7 | 220 | 9.47e-24 | 98.2 |
Find 62 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAATTCAATTCCTATATT+TGG | 0.111357 | 5.2:-3458696 | MS.gene21628:CDS |
| TGGTGGCTCTTAAATGGTTT+TGG | 0.262359 | 5.2:+3459111 | None:intergenic |
| GAAAAGTGGTGGCTCTTAAA+TGG | 0.270841 | 5.2:+3459105 | None:intergenic |
| TGCAGCAGCTTCTTCACCCT+TGG | 0.304179 | 5.2:-3455884 | MS.gene21628:CDS |
| TTGACGAACTCTTGCCGTTC+AGG | 0.307648 | 5.2:-3457413 | MS.gene21628:intron |
| ATTGACTTCAGGTGTACTTC+GGG | 0.333621 | 5.2:-3456556 | MS.gene21628:intron |
| GTACTTGGTGGCTCTTTACT+AGG | 0.355968 | 5.2:-3455361 | MS.gene21628:CDS |
| TATTGCTGCTGTTTGCCTAT+TGG | 0.359627 | 5.2:-3456789 | MS.gene21628:intron |
| TCACCCTTGGGAGTCATAGC+TGG | 0.372547 | 5.2:-3455871 | MS.gene21628:CDS |
| GCAGCAGCTTCTTCACCCTT+GGG | 0.388248 | 5.2:-3455883 | MS.gene21628:CDS |
| CTATTGTACAATTTCAAATA+CGG | 0.406878 | 5.2:+3454662 | None:intergenic |
| TCACCGACATCTCCAAATAT+AGG | 0.430048 | 5.2:+3458684 | None:intergenic |
| CGCTCTTCAAGATACTTATC+CGG | 0.435532 | 5.2:-3458748 | MS.gene21628:CDS |
| AATTGACTTCAGGTGTACTT+CGG | 0.438568 | 5.2:-3456557 | MS.gene21628:intron |
| CACCGATAGTGAATGTCAAT+TGG | 0.440392 | 5.2:-3458850 | MS.gene21628:CDS |
| CTTCGGGGTCTCTACCCTGC+TGG | 0.449149 | 5.2:-3456540 | MS.gene21628:CDS |
| ACAGCAGCAATATCATCAAT+AGG | 0.453364 | 5.2:+3456800 | None:intergenic |
| TTGCGGAGAAGAGGAGGAGG+AGG | 0.463573 | 5.2:+3459045 | None:intergenic |
| TGGTCATGGTGTTGCAACTT+TGG | 0.476822 | 5.2:-3455839 | MS.gene21628:intron |
| CACTAGATGAGGCATCCAGC+AGG | 0.488503 | 5.2:+3456525 | None:intergenic |
| TTGAGATTGCGGAGAAGAGG+AGG | 0.490822 | 5.2:+3459039 | None:intergenic |
| AAGGTTATTGCCTACATTGG+AGG | 0.491460 | 5.2:-3454714 | MS.gene21628:CDS |
| AGATTGCGGAGAAGAGGAGG+AGG | 0.494357 | 5.2:+3459042 | None:intergenic |
| TATATGCAGATAGCCGTACT+TGG | 0.497430 | 5.2:-3455376 | MS.gene21628:intron |
| TAGTAAAGAGCCACCAAGTA+CGG | 0.507339 | 5.2:+3455363 | None:intergenic |
| TTGAAGGTTATTGCCTACAT+TGG | 0.509870 | 5.2:-3454717 | MS.gene21628:intron |
| TCTTCTGATGACAGTGATGA+TGG | 0.513887 | 5.2:-3458813 | MS.gene21628:CDS |
| AATTTGAGATTGCGGAGAAG+AGG | 0.521659 | 5.2:+3459036 | None:intergenic |
| GGGAGTCATAGCTGGATCAC+TGG | 0.523241 | 5.2:-3455863 | MS.gene21628:CDS |
| GTCATAGCTGGATCACTGGC+TGG | 0.529444 | 5.2:-3455859 | MS.gene21628:CDS |
| GCTGGATCACTGGCTGGTCA+TGG | 0.529965 | 5.2:-3455853 | MS.gene21628:CDS |
| ATTCCTATATTTGGAGATGT+CGG | 0.536730 | 5.2:-3458687 | MS.gene21628:CDS |
| ACTTCAGCACTCACCAATTG+TGG | 0.537826 | 5.2:+3456222 | None:intergenic |
| ACTGTCATATCTGTCGCTCT+AGG | 0.541366 | 5.2:-3457453 | MS.gene21628:CDS |
| TACTTGGTGGCTCTTTACTA+GGG | 0.542656 | 5.2:-3455360 | MS.gene21628:CDS |
| AAAAGAGCTGACAATTGTGC+TGG | 0.547382 | 5.2:+3456288 | None:intergenic |
| AAATCAGAAGCAGCAACTGC+CGG | 0.549140 | 5.2:+3458729 | None:intergenic |
| AAAATCAGATGATGAACAGA+AGG | 0.549624 | 5.2:-3456495 | MS.gene21628:CDS |
| AAAGAGCACACCTCCAATGT+AGG | 0.554559 | 5.2:+3454704 | None:intergenic |
| GGGTGAAGAAGCTGCTGCAA+GGG | 0.562488 | 5.2:+3455888 | None:intergenic |
| AGGGTGAAGAAGCTGCTGCA+AGG | 0.572131 | 5.2:+3455887 | None:intergenic |
| ATGCAGATAGCCGTACTTGG+TGG | 0.574843 | 5.2:-3455373 | MS.gene21628:intron |
| TTAGCAGCTAGAAATTCAGC+TGG | 0.576869 | 5.2:-3457901 | MS.gene21628:CDS |
| GATGTCGGTGACTTAAGCAC+AGG | 0.588767 | 5.2:-3458672 | MS.gene21628:CDS |
| TGATCCAGCTATGACTCCCA+AGG | 0.589560 | 5.2:+3455867 | None:intergenic |
| TTCGGCAACAGAATCATGAT+CGG | 0.593303 | 5.2:+3458875 | None:intergenic |
| TGCCAATTGACATTCACTAT+CGG | 0.600023 | 5.2:+3458848 | None:intergenic |
| ATCAGATGATGAACAGAAGG+AGG | 0.612938 | 5.2:-3456492 | MS.gene21628:intron |
| ACTAGATGAGGCATCCAGCA+GGG | 0.613791 | 5.2:+3456526 | None:intergenic |
| CGTTGTACGCTGGAAAATGT+TGG | 0.627577 | 5.2:+3458993 | None:intergenic |
| AGGTGGTGAAAGATGAAAAG+TGG | 0.629418 | 5.2:+3459091 | None:intergenic |
| GGAAGAGGATATAAGTGAGG+TGG | 0.632300 | 5.2:+3459074 | None:intergenic |
| GCTCTTTCTCGTCTTTGCTG+CGG | 0.646798 | 5.2:-3454688 | MS.gene21628:CDS |
| AGGAAATTACCGTTGTACGC+TGG | 0.647356 | 5.2:+3458983 | None:intergenic |
| AATGGAAGAGGATATAAGTG+AGG | 0.651009 | 5.2:+3459071 | None:intergenic |
| TTGACTTCAGGTGTACTTCG+GGG | 0.651651 | 5.2:-3456555 | MS.gene21628:intron |
| GATCCAGCTATGACTCCCAA+GGG | 0.660586 | 5.2:+3455868 | None:intergenic |
| GTGGTGGTAATTTGAGATTG+CGG | 0.694722 | 5.2:+3459028 | None:intergenic |
| ATGTTGGTGAATTGAAAGCG+TGG | 0.698703 | 5.2:+3459009 | None:intergenic |
| ATCTTGAAGAGCGAAGAACG+CGG | 0.705375 | 5.2:+3458758 | None:intergenic |
| TGGTGAAAGATGAAAAGTGG+TGG | 0.722848 | 5.2:+3459094 | None:intergenic |
| TTGGTGAATTGAAAGCGTGG+TGG | 0.759701 | 5.2:+3459012 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTTTAATTTCTTTTGA+AGG | - | chr5.2:3459079-3459098 | MS.gene21628:CDS | 10.0% |
| !! | ACAATAAAATATAAATCCAA+AGG | + | chr5.2:3456847-3456866 | None:intergenic | 15.0% |
| !! | AGTGAATAGAATTAAAAAAA+TGG | + | chr5.2:3457400-3457419 | None:intergenic | 15.0% |
| !! | ATTATGATAAAACTGTTATA+TGG | + | chr5.2:3456685-3456704 | None:intergenic | 15.0% |
| !! | ATTGTAATTATTAAAGTAAC+AGG | + | chr5.2:3455190-3455209 | None:intergenic | 15.0% |
| !! | CTTGAGTAATAAAAATAAAT+AGG | + | chr5.2:3456296-3456315 | None:intergenic | 15.0% |
| !! | GAATTTCATTAAAATAAGTA+TGG | - | chr5.2:3458776-3458795 | MS.gene21628:CDS | 15.0% |
| !! | GTGAATAGAATTAAAAAAAT+GGG | + | chr5.2:3457399-3457418 | None:intergenic | 15.0% |
| !! | TGTAAAAATTAACATGAAAA+GGG | - | chr5.2:3456466-3456485 | MS.gene21628:intron | 15.0% |
| !! | TTGTAAAAATTAACATGAAA+AGG | - | chr5.2:3456465-3456484 | MS.gene21628:intron | 15.0% |
| !! | TTGTAATTATTAAAGTAACA+GGG | + | chr5.2:3455189-3455208 | None:intergenic | 15.0% |
| !!! | AAAAAACTATTTTCTTCAAA+AGG | - | chr5.2:3458698-3458717 | MS.gene21628:CDS | 15.0% |
| !!! | ATAATATTTCTAGAAAACAT+GGG | + | chr5.2:3456805-3456824 | None:intergenic | 15.0% |
| !!! | ATAGCATTAAAATTTTCATA+TGG | + | chr5.2:3458934-3458953 | None:intergenic | 15.0% |
| !!! | ATTTTCATTTGTAATAATAC+TGG | + | chr5.2:3455228-3455247 | None:intergenic | 15.0% |
| !!! | GAAAGATAATTATTTTTTAG+AGG | - | chr5.2:3456248-3456267 | MS.gene21628:CDS | 15.0% |
| !!! | TTTTAAAACAGAAAATGTAA+AGG | + | chr5.2:3457213-3457232 | None:intergenic | 15.0% |
| !! | AAATAAAAACACAGAGATAA+AGG | + | chr5.2:3456430-3456449 | None:intergenic | 20.0% |
| !! | AATGAAATAAAGTTGAAGAT+AGG | + | chr5.2:3454858-3454877 | None:intergenic | 20.0% |
| !! | ACAACTTAGAATAATGAAAT+TGG | - | chr5.2:3456078-3456097 | MS.gene21628:intron | 20.0% |
| !! | AGATTCATTAAACAATGTAA+AGG | - | chr5.2:3458631-3458650 | MS.gene21628:intron | 20.0% |
| !! | ATTGATGAGATAAAAATGAA+GGG | - | chr5.2:3455834-3455853 | MS.gene21628:intron | 20.0% |
| !! | CTATTGTACAATTTCAAATA+CGG | + | chr5.2:3459153-3459172 | None:intergenic | 20.0% |
| !! | GTATATCTCTAAATAACTTT+GGG | - | chr5.2:3458392-3458411 | MS.gene21628:intron | 20.0% |
| !! | GTATTACAAGTTATAAAGAA+TGG | - | chr5.2:3456933-3456952 | MS.gene21628:intron | 20.0% |
| !! | TAAAATATAAATCCAAAGGA+AGG | + | chr5.2:3456843-3456862 | None:intergenic | 20.0% |
| !! | TAAACTTTCCATAATAGTTA+AGG | + | chr5.2:3458323-3458342 | None:intergenic | 20.0% |
| !! | TATTGATGAGATAAAAATGA+AGG | - | chr5.2:3455833-3455852 | MS.gene21628:intron | 20.0% |
| !! | TGAAAATGAAAATACATTTG+AGG | + | chr5.2:3454896-3454915 | None:intergenic | 20.0% |
| !! | TGAGATTTATTCGAAAAATT+TGG | - | chr5.2:3455809-3455828 | MS.gene21628:intron | 20.0% |
| !! | TGTATATCTCTAAATAACTT+TGG | - | chr5.2:3458391-3458410 | MS.gene21628:intron | 20.0% |
| !! | TTGAATTCAATTCCTATATT+TGG | - | chr5.2:3455116-3455135 | MS.gene21628:intron | 20.0% |
| !!! | AAACACAAATGCAATTTTTT+TGG | + | chr5.2:3457170-3457189 | None:intergenic | 20.0% |
| !!! | AACACAAATGCAATTTTTTT+GGG | + | chr5.2:3457169-3457188 | None:intergenic | 20.0% |
| !!! | AATACAACATCAAATTCTTT+TGG | - | chr5.2:3456702-3456721 | MS.gene21628:intron | 20.0% |
| !!! | ATACAACATCAAATTCTTTT+GGG | - | chr5.2:3456703-3456722 | MS.gene21628:intron | 20.0% |
| !!! | ATGTATTAGTTTGTTTGATA+GGG | + | chr5.2:3457711-3457730 | None:intergenic | 20.0% |
| !!! | ATGTATTTTCATTTTCACAT+AGG | - | chr5.2:3454899-3454918 | MS.gene21628:intron | 20.0% |
| !!! | ATTTTGTTTTTTGATCTTGT+TGG | + | chr5.2:3458270-3458289 | None:intergenic | 20.0% |
| !!! | GATAATATTTCTAGAAAACA+TGG | + | chr5.2:3456806-3456825 | None:intergenic | 20.0% |
| !!! | TAAAAAAGTACTTGTATATC+TGG | + | chr5.2:3457374-3457393 | None:intergenic | 20.0% |
| !!! | TCAATTAATTTGCTTGTTTT+TGG | - | chr5.2:3456326-3456345 | MS.gene21628:CDS | 20.0% |
| !!! | TGTATTTTCATTTTCACATA+GGG | - | chr5.2:3454900-3454919 | MS.gene21628:intron | 20.0% |
| !!! | TTTTGTTTTTTGATCTTGTT+GGG | + | chr5.2:3458269-3458288 | None:intergenic | 20.0% |
| ! | AAATAACTAACTAACAGAGT+TGG | + | chr5.2:3455252-3455271 | None:intergenic | 25.0% |
| ! | AAATGCAAAACAATGATGAA+AGG | - | chr5.2:3455749-3455768 | MS.gene21628:intron | 25.0% |
| ! | ACCAAAGATAAATAACACAA+GGG | + | chr5.2:3456557-3456576 | None:intergenic | 25.0% |
| ! | AGCAATATAATGAACACTAT+TGG | - | chr5.2:3456607-3456626 | MS.gene21628:intron | 25.0% |
| ! | ATCAAACAAACTAATACATG+AGG | - | chr5.2:3457712-3457731 | MS.gene21628:intron | 25.0% |
| ! | CTTATTTCCATAAACTATTC+AGG | + | chr5.2:3455404-3455423 | None:intergenic | 25.0% |
| ! | GAACTTATGGAAACAATTTA+TGG | + | chr5.2:3455449-3455468 | None:intergenic | 25.0% |
| ! | GATGAAAATAAATCTACATG+AGG | - | chr5.2:3458293-3458312 | MS.gene21628:intron | 25.0% |
| ! | TACCAAAGATAAATAACACA+AGG | + | chr5.2:3456558-3456577 | None:intergenic | 25.0% |
| ! | TAGCTTATGAAAAGAACTTA+TGG | + | chr5.2:3455380-3455399 | None:intergenic | 25.0% |
| ! | TCAAACAAACTAATACATGA+GGG | - | chr5.2:3457713-3457732 | MS.gene21628:intron | 25.0% |
| ! | TGATAAAACTGTTATATGGT+TGG | + | chr5.2:3456681-3456700 | None:intergenic | 25.0% |
| ! | TTGATGAGATAAAAATGAAG+GGG | - | chr5.2:3455835-3455854 | MS.gene21628:intron | 25.0% |
| !! | AGTAGTATTTTATTACGCTT+CGG | - | chr5.2:3458086-3458105 | MS.gene21628:intron | 25.0% |
| !! | TAGAATGTTTATAAAGCACT+TGG | + | chr5.2:3458172-3458191 | None:intergenic | 25.0% |
| !! | TTAAGATTTCAATTGACTTC+AGG | - | chr5.2:3457245-3457264 | MS.gene21628:intron | 25.0% |
| !! | TTTTTCATGATTAATCACCA+TGG | - | chr5.2:3456010-3456029 | MS.gene21628:intron | 25.0% |
| !!! | AAATCATTTTTCTCCACAAT+TGG | - | chr5.2:3457577-3457596 | MS.gene21628:intron | 25.0% |
| !!! | AGTTATTTCTGTTGTAGTTA+CGG | - | chr5.2:3455264-3455283 | MS.gene21628:intron | 25.0% |
| !!! | ATTGTTTTATGCTTTATCAC+AGG | - | chr5.2:3455612-3455631 | MS.gene21628:intron | 25.0% |
| !!! | CATGTATTAGTTTGTTTGAT+AGG | + | chr5.2:3457712-3457731 | None:intergenic | 25.0% |
| !!! | CTCTGTGTTTTTATTTTGAA+TGG | - | chr5.2:3456434-3456453 | MS.gene21628:intron | 25.0% |
| !!! | GGTTTTTTCCATTTCAAAAA+TGG | - | chr5.2:3458557-3458576 | MS.gene21628:intron | 25.0% |
| !!! | TTCATCATTGTTTTGCATTT+GGG | + | chr5.2:3455749-3455768 | None:intergenic | 25.0% |
| !!! | TTTCATCATTGTTTTGCATT+TGG | + | chr5.2:3455750-3455769 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTTGATCTTGTTG+GGG | + | chr5.2:3458268-3458287 | None:intergenic | 25.0% |
| !!! | TTTTTGAAATGGAAAAAACC+AGG | + | chr5.2:3458557-3458576 | None:intergenic | 25.0% |
| AAAATCAGATGATGAACAGA+AGG | - | chr5.2:3457317-3457336 | MS.gene21628:intron | 30.0% | |
| AAGCTATCCTGAATAGTTTA+TGG | - | chr5.2:3455394-3455413 | MS.gene21628:intron | 30.0% | |
| AATACCCAATTTACGAATTC+TGG | + | chr5.2:3458584-3458603 | None:intergenic | 30.0% | |
| AATCATGAAAAACACCTTCA+AGG | + | chr5.2:3456002-3456021 | None:intergenic | 30.0% | |
| AGACATATGAAAAGTGAACA+TGG | - | chr5.2:3456584-3456603 | MS.gene21628:intron | 30.0% | |
| AGATAAAGGAAAAACCTGAA+CGG | + | chr5.2:3456416-3456435 | None:intergenic | 30.0% | |
| AGGAGGTAATATTTGGTATT+TGG | - | chr5.2:3457337-3457356 | MS.gene21628:intron | 30.0% | |
| ATACAACAGTTTCCACATTA+GGG | + | chr5.2:3455522-3455541 | None:intergenic | 30.0% | |
| ATCATGAAAAACACCTTCAA+GGG | + | chr5.2:3456001-3456020 | None:intergenic | 30.0% | |
| ATTCCTATATTTGGAGATGT+CGG | - | chr5.2:3455125-3455144 | MS.gene21628:intron | 30.0% | |
| ATTGACGCATCTTCTAAATA+TGG | - | chr5.2:3458013-3458032 | MS.gene21628:intron | 30.0% | |
| CAAATTTGGATTTGCCAAAA+TGG | - | chr5.2:3458121-3458140 | MS.gene21628:intron | 30.0% | |
| CTGATCTGACTAATATTCTT+AGG | - | chr5.2:3456905-3456924 | MS.gene21628:intron | 30.0% | |
| GAGGAAAACCTTAACTATTA+TGG | - | chr5.2:3458312-3458331 | MS.gene21628:intron | 30.0% | |
| GCTATCTGCATATAAAAGAA+AGG | + | chr5.2:3458430-3458449 | None:intergenic | 30.0% | |
| GGACTAAGATAGTTTATGTA+AGG | - | chr5.2:3457112-3457131 | MS.gene21628:intron | 30.0% | |
| GTAGTTACGGTCATTTATTT+AGG | - | chr5.2:3455277-3455296 | MS.gene21628:intron | 30.0% | |
| TACCTATAGAATATAGGTCA+TGG | - | chr5.2:3458724-3458743 | MS.gene21628:CDS | 30.0% | |
| TATACAACAGTTTCCACATT+AGG | + | chr5.2:3455523-3455542 | None:intergenic | 30.0% | |
| TCATCTGCAAAAAGAATCAA+TGG | - | chr5.2:3456739-3456758 | MS.gene21628:intron | 30.0% | |
| TGATGAGATAAAAATGAAGG+GGG | - | chr5.2:3455836-3455855 | MS.gene21628:intron | 30.0% | |
| TTCCATGACCTATATTCTAT+AGG | + | chr5.2:3458729-3458748 | None:intergenic | 30.0% | |
| TTCTTTCGAACTCATCTAAT+AGG | - | chr5.2:3456957-3456976 | MS.gene21628:intron | 30.0% | |
| TTGAAGTCTAGTGATATTGT+TGG | + | chr5.2:3456134-3456153 | None:intergenic | 30.0% | |
| TTGACGCATCTTCTAAATAT+GGG | - | chr5.2:3458014-3458033 | MS.gene21628:intron | 30.0% | |
| ! | AATTGCATTTGTGTTTGCTA+TGG | - | chr5.2:3457174-3457193 | MS.gene21628:intron | 30.0% |
| ! | CTGATATTTTTCTCTGAACT+GGG | - | chr5.2:3455643-3455662 | MS.gene21628:intron | 30.0% |
| ! | GATTTTTGTTGCACTTTAGT+TGG | + | chr5.2:3458147-3458166 | None:intergenic | 30.0% |
| ! | GTAGTATTTTATTACGCTTC+GGG | - | chr5.2:3458087-3458106 | MS.gene21628:intron | 30.0% |
| ! | TCTGTTCATCATCTGATTTT+TGG | + | chr5.2:3457317-3457336 | None:intergenic | 30.0% |
| ! | TGACGATATTTTCTATGCAA+TGG | - | chr5.2:3457430-3457449 | MS.gene21628:CDS | 30.0% |
| ! | TTAGCAGTTTCTGATTTTTC+TGG | - | chr5.2:3457475-3457494 | MS.gene21628:intron | 30.0% |
| ! | TTGTACTGATCCAAATTAAC+TGG | + | chr5.2:3457775-3457794 | None:intergenic | 30.0% |
| ! | TTTACTAGGGACATTTTTGT+CGG | - | chr5.2:3458465-3458484 | MS.gene21628:intron | 30.0% |
| ! | TTTCTAGAAAACATGGGATT+TGG | + | chr5.2:3456799-3456818 | None:intergenic | 30.0% |
| ! | TTTGGAATATTACCTCATAC+AGG | - | chr5.2:3459033-3459052 | MS.gene21628:CDS | 30.0% |
| !! | ACCCTTGTGTTATTTATCTT+TGG | - | chr5.2:3456553-3456572 | MS.gene21628:intron | 30.0% |
| !! | ATTCTGGTCCATTTTTGAAA+TGG | + | chr5.2:3458568-3458587 | None:intergenic | 30.0% |
| !! | TCATTTATTTAGGCCTTGTT+TGG | - | chr5.2:3455287-3455306 | MS.gene21628:intron | 30.0% |
| !! | TCTAATAGGTTAATTTGCAC+AGG | - | chr5.2:3456971-3456990 | MS.gene21628:intron | 30.0% |
| !! | TTTGGAGCAAGATGTTTTTA+TGG | + | chr5.2:3457686-3457705 | None:intergenic | 30.0% |
| !!! | CTGTTTTAAAATTGAACACG+TGG | - | chr5.2:3457222-3457241 | MS.gene21628:intron | 30.0% |
| !!! | TAATTTGCTTGTTTTTGGCA+GGG | - | chr5.2:3456331-3456350 | MS.gene21628:CDS | 30.0% |
| !!! | TTAATTTGCTTGTTTTTGGC+AGG | - | chr5.2:3456330-3456349 | MS.gene21628:CDS | 30.0% |
| !!! | TTGTTTTTTGATCTTGTTGG+GGG | + | chr5.2:3458267-3458286 | None:intergenic | 30.0% |
| AAACCACAGTATATCAGGAA+CGG | + | chr5.2:3458520-3458539 | None:intergenic | 35.0% | |
| AATGGAAGAGGATATAAGTG+AGG | + | chr5.2:3454744-3454763 | None:intergenic | 35.0% | |
| ACAGCAGCAATATCATCAAT+AGG | + | chr5.2:3457015-3457034 | None:intergenic | 35.0% | |
| ATAAAGTTGAAGATAGGTGC+AGG | + | chr5.2:3454852-3454871 | None:intergenic | 35.0% | |
| ATGCTATAAGCGCTTAACTA+AGG | + | chr5.2:3455320-3455339 | None:intergenic | 35.0% | |
| ATGGACCAGAATTCGTAAAT+TGG | - | chr5.2:3458576-3458595 | MS.gene21628:intron | 35.0% | |
| ATGGAGGTGAATTTACCAAT+AGG | + | chr5.2:3457041-3457060 | None:intergenic | 35.0% | |
| CCAAACAGATACACAAATGT+AGG | + | chr5.2:3459018-3459037 | None:intergenic | 35.0% | |
| CCTACATTTGTGTATCTGTT+TGG | - | chr5.2:3459015-3459034 | MS.gene21628:CDS | 35.0% | |
| CTAACAAACCACAGTATATC+AGG | + | chr5.2:3458525-3458544 | None:intergenic | 35.0% | |
| CTAAGGTGTATATCCAAACA+AGG | + | chr5.2:3455303-3455322 | None:intergenic | 35.0% | |
| GAACAGAAGGAGGTAATATT+TGG | - | chr5.2:3457330-3457349 | MS.gene21628:intron | 35.0% | |
| GATGAGATAAAAATGAAGGG+GGG | - | chr5.2:3455837-3455856 | MS.gene21628:intron | 35.0% | |
| GCATTTGTACAAAACTCTTC+AGG | - | chr5.2:3456196-3456215 | MS.gene21628:intron | 35.0% | |
| GTACCAAATCTAGGTCATTA+GGG | + | chr5.2:3458245-3458264 | None:intergenic | 35.0% | |
| TATGTAAACGCGGTAGTATT+AGG | - | chr5.2:3457064-3457083 | MS.gene21628:intron | 35.0% | |
| TCAGATCAGATAGTCAGATT+AGG | + | chr5.2:3456894-3456913 | None:intergenic | 35.0% | |
| TGAAACTGCTTAAAGAGTTC+CGG | - | chr5.2:3458206-3458225 | MS.gene21628:intron | 35.0% | |
| TGACGCATCTTCTAAATATG+GGG | - | chr5.2:3458015-3458034 | MS.gene21628:intron | 35.0% | |
| TGAGTGTTTGATGTTTATGC+AGG | - | chr5.2:3455883-3455902 | MS.gene21628:CDS | 35.0% | |
| TGATGCAATGCAAACAATTG+TGG | - | chr5.2:3456042-3456061 | MS.gene21628:intron | 35.0% | |
| TGCCAATTGACATTCACTAT+CGG | + | chr5.2:3454967-3454986 | None:intergenic | 35.0% | |
| TGGACCAGAATTCGTAAATT+GGG | - | chr5.2:3458577-3458596 | MS.gene21628:intron | 35.0% | |
| TGTGATTTAGATTCCCTTGA+AGG | - | chr5.2:3455985-3456004 | MS.gene21628:intron | 35.0% | |
| TTGAAGGTTATTGCCTACAT+TGG | - | chr5.2:3459095-3459114 | MS.gene21628:CDS | 35.0% | |
| TTGCATCAACTTATCAACCA+TGG | + | chr5.2:3456030-3456049 | None:intergenic | 35.0% | |
| ! | AATTGACTTCAGGTGTACTT+CGG | - | chr5.2:3457255-3457274 | MS.gene21628:intron | 35.0% |
| ! | ACTGTTATATGGTTGGTCAA+AGG | + | chr5.2:3456674-3456693 | None:intergenic | 35.0% |
| ! | AGGTGCTACCTATAGAATAT+AGG | - | chr5.2:3458718-3458737 | MS.gene21628:CDS | 35.0% |
| ! | CTGACTTGAACCAGTTAATT+TGG | - | chr5.2:3457762-3457781 | MS.gene21628:intron | 35.0% |
| ! | CTGTTATATGGTTGGTCAAA+GGG | + | chr5.2:3456673-3456692 | None:intergenic | 35.0% |
| ! | GCTGATATTTTTCTCTGAAC+TGG | - | chr5.2:3455642-3455661 | MS.gene21628:intron | 35.0% |
| ! | GTTTGTTAGTTTCAACTTCC+TGG | - | chr5.2:3458536-3458555 | MS.gene21628:intron | 35.0% |
| ! | TCTGTGGATAATTTTCTGCA+CGG | - | chr5.2:3458753-3458772 | MS.gene21628:CDS | 35.0% |
| !! | ACATTCACTATCGGTGTTTT+CGG | + | chr5.2:3454958-3454977 | None:intergenic | 35.0% |
| !! | AGTTTGTTTGATAGGGCTTT+TGG | + | chr5.2:3457704-3457723 | None:intergenic | 35.0% |
| !! | CTTAGTTTTTGTTGCTGAGT+GGG | - | chr5.2:3457549-3457568 | MS.gene21628:intron | 35.0% |
| !! | GTTTCTGATTTTTCTGGAGA+CGG | - | chr5.2:3457481-3457500 | MS.gene21628:intron | 35.0% |
| !! | TAGGTTAATTTGCACAGGTT+TGG | - | chr5.2:3456976-3456995 | MS.gene21628:intron | 35.0% |
| !! | TCTTAGTTTTTGTTGCTGAG+TGG | - | chr5.2:3457548-3457567 | MS.gene21628:intron | 35.0% |
| !! | TTAGTTTTTGTTGCTGAGTG+GGG | - | chr5.2:3457550-3457569 | MS.gene21628:intron | 35.0% |
| !!! | AGACTGTTTTGGAGAACTTA+TGG | + | chr5.2:3455462-3455481 | None:intergenic | 35.0% |
| !!! | TTTTTGGCTATCACTAGATG+AGG | + | chr5.2:3457301-3457320 | None:intergenic | 35.0% |
| AAAAGAGCTGACAATTGTGC+TGG | + | chr5.2:3457527-3457546 | None:intergenic | 40.0% | |
| AACAGATACAGACCCTAATG+TGG | - | chr5.2:3455507-3455526 | MS.gene21628:intron | 40.0% | |
| AAGGTTATTGCCTACATTGG+AGG | - | chr5.2:3459098-3459117 | MS.gene21628:CDS | 40.0% | |
| AGGTGGTGAAAGATGAAAAG+TGG | + | chr5.2:3454724-3454743 | None:intergenic | 40.0% | |
| ATCAGATGATGAACAGAAGG+AGG | - | chr5.2:3457320-3457339 | MS.gene21628:intron | 40.0% | |
| CAATGGTTCCTACATTAACC+AGG | - | chr5.2:3457447-3457466 | MS.gene21628:CDS | 40.0% | |
| CACCGATAGTGAATGTCAAT+TGG | - | chr5.2:3454962-3454981 | MS.gene21628:intron | 40.0% | |
| CAGGCTTATATTGTGTCTAG+AGG | - | chr5.2:3456215-3456234 | MS.gene21628:intron | 40.0% | |
| CCTCCATGTTTATGTAAACG+CGG | - | chr5.2:3457054-3457073 | MS.gene21628:intron | 40.0% | |
| CGCTCTTCAAGATACTTATC+CGG | - | chr5.2:3455064-3455083 | MS.gene21628:intron | 40.0% | |
| CTACCGCGTTTACATAAACA+TGG | + | chr5.2:3457060-3457079 | None:intergenic | 40.0% | |
| CTTAATAACCCCAACCAACA+GGG | + | chr5.2:3458896-3458915 | None:intergenic | 40.0% | |
| CTTCCCTAATGACCTAGATT+TGG | - | chr5.2:3458239-3458258 | MS.gene21628:intron | 40.0% | |
| GAAAAGTGGTGGCTCTTAAA+TGG | + | chr5.2:3454710-3454729 | None:intergenic | 40.0% | |
| GGGAACAGCAAGTACAAATT+TGG | - | chr5.2:3458107-3458126 | MS.gene21628:intron | 40.0% | |
| GGTACCAAATCTAGGTCATT+AGG | + | chr5.2:3458246-3458265 | None:intergenic | 40.0% | |
| TAACTCTGCCTGGTTAATGT+AGG | + | chr5.2:3457458-3457477 | None:intergenic | 40.0% | |
| TAGGTCATGGAAATCTTCTG+TGG | - | chr5.2:3458737-3458756 | MS.gene21628:CDS | 40.0% | |
| TAGTAAAGAGCCACCAAGTA+CGG | + | chr5.2:3458452-3458471 | None:intergenic | 40.0% | |
| TATATGCAGATAGCCGTACT+TGG | - | chr5.2:3458436-3458455 | MS.gene21628:intron | 40.0% | |
| TCACCGACATCTCCAAATAT+AGG | + | chr5.2:3455131-3455150 | None:intergenic | 40.0% | |
| TCGAATAAATCTCAACAGCG+AGG | + | chr5.2:3455803-3455822 | None:intergenic | 40.0% | |
| TCTTAATAACCCCAACCAAC+AGG | + | chr5.2:3458897-3458916 | None:intergenic | 40.0% | |
| TCTTCTGATGACAGTGATGA+TGG | - | chr5.2:3454999-3455018 | MS.gene21628:intron | 40.0% | |
| TGGTGAAAGATGAAAAGTGG+TGG | + | chr5.2:3454721-3454740 | None:intergenic | 40.0% | |
| TGTTCTTTCGCAGAAAACTC+CGG | + | chr5.2:3458834-3458853 | None:intergenic | 40.0% | |
| TTAGCAGCTAGAAATTCAGC+TGG | - | chr5.2:3455911-3455930 | MS.gene21628:intron | 40.0% | |
| TTCACTTCTAGTCCTTCCTT+TGG | - | chr5.2:3456828-3456847 | MS.gene21628:intron | 40.0% | |
| TTCGGCAACAGAATCATGAT+CGG | + | chr5.2:3454940-3454959 | None:intergenic | 40.0% | |
| ! | AATTTGAGATTGCGGAGAAG+AGG | + | chr5.2:3454779-3454798 | None:intergenic | 40.0% |
| ! | AGTACCTTGCATTTGAAGCA+TGG | - | chr5.2:3458991-3459010 | MS.gene21628:intron | 40.0% |
| ! | ATGTTGGTGAATTGAAAGCG+TGG | + | chr5.2:3454806-3454825 | None:intergenic | 40.0% |
| ! | ATTGACTTCAGGTGTACTTC+GGG | - | chr5.2:3457256-3457275 | MS.gene21628:intron | 40.0% |
| ! | CAACACTAGTGAGACTGTTT+TGG | + | chr5.2:3455473-3455492 | None:intergenic | 40.0% |
| ! | CAACATTTTCCAGCGTACAA+CGG | - | chr5.2:3454820-3454839 | MS.gene21628:intron | 40.0% |
| ! | CTGTGGATAATTTTCTGCAC+GGG | - | chr5.2:3458754-3458773 | MS.gene21628:CDS | 40.0% |
| ! | GTGGTGGTAATTTGAGATTG+CGG | + | chr5.2:3454787-3454806 | None:intergenic | 40.0% |
| ! | TACTTGGTGGCTCTTTACTA+GGG | - | chr5.2:3458452-3458471 | MS.gene21628:intron | 40.0% |
| ! | TATTGCTGCTGTTTGCCTAT+TGG | - | chr5.2:3457023-3457042 | MS.gene21628:intron | 40.0% |
| ! | TGCACTTTAGTTGGCCATTT+TGG | + | chr5.2:3458138-3458157 | None:intergenic | 40.0% |
| ! | TGGTGGCTCTTAAATGGTTT+TGG | + | chr5.2:3454704-3454723 | None:intergenic | 40.0% |
| !! | GTTGTTTTCGTTGGGACATT+TGG | - | chr5.2:3455935-3455954 | MS.gene21628:intron | 40.0% |
| AAATCAGAAGCAGCAACTGC+CGG | + | chr5.2:3455086-3455105 | None:intergenic | 45.0% | |
| AAGAGGAGGAGGAGGAAAAA+TGG | + | chr5.2:3454762-3454781 | None:intergenic | 45.0% | |
| AATGCTCTACCACTGAGCTA+TGG | - | chr5.2:3456530-3456549 | MS.gene21628:CDS | 45.0% | |
| ACTGTCATATCTGTCGCTCT+AGG | - | chr5.2:3456359-3456378 | MS.gene21628:intron | 45.0% | |
| ACTTCAGCACTCACCAATTG+TGG | + | chr5.2:3457593-3457612 | None:intergenic | 45.0% | |
| AGGAAATTACCGTTGTACGC+TGG | + | chr5.2:3454832-3454851 | None:intergenic | 45.0% | |
| AGGAGGAGGAAAAATGGAAG+AGG | + | chr5.2:3454756-3454775 | None:intergenic | 45.0% | |
| AGGTCCATGCTTCAAATGCA+AGG | + | chr5.2:3458998-3459017 | None:intergenic | 45.0% | |
| ATCTTGAAGAGCGAAGAACG+CGG | + | chr5.2:3455057-3455076 | None:intergenic | 45.0% | |
| ATGATGTGAAGTCTCCCTGT+TGG | - | chr5.2:3458879-3458898 | MS.gene21628:CDS | 45.0% | |
| CATCCGTTCCTGATATACTG+TGG | - | chr5.2:3458514-3458533 | MS.gene21628:intron | 45.0% | |
| CCGCGTTTACATAAACATGG+AGG | + | chr5.2:3457057-3457076 | None:intergenic | 45.0% | |
| CGTTGTACGCTGGAAAATGT+TGG | + | chr5.2:3454822-3454841 | None:intergenic | 45.0% | |
| GCATTTGACTGCAGATCAAG+AGG | + | chr5.2:3456515-3456534 | None:intergenic | 45.0% | |
| GGAAGAGGATATAAGTGAGG+TGG | + | chr5.2:3454741-3454760 | None:intergenic | 45.0% | |
| TAACATGAAAAGGGCCCAAC+CGG | - | chr5.2:3456475-3456494 | MS.gene21628:intron | 45.0% | |
| TAGGATTGAGCTAGTGGTGA+AGG | - | chr5.2:3457091-3457110 | MS.gene21628:intron | 45.0% | |
| TGCAAGGGCTAAATAGTAGG+AGG | + | chr5.2:3457912-3457931 | None:intergenic | 45.0% | |
| TGCTGCAAGGGCTAAATAGT+AGG | + | chr5.2:3457915-3457934 | None:intergenic | 45.0% | |
| TTAGGGAAGAGATAGCTCAC+CGG | + | chr5.2:3458228-3458247 | None:intergenic | 45.0% | |
| TTGACTTCAGGTGTACTTCG+GGG | - | chr5.2:3457257-3457276 | MS.gene21628:intron | 45.0% | |
| ! | AAAGAGCACACCTCCAATGT+AGG | + | chr5.2:3459111-3459130 | None:intergenic | 45.0% |
| ! | AGGGACATTTTTGTCGGAGA+AGG | - | chr5.2:3458471-3458490 | MS.gene21628:intron | 45.0% |
| ! | GCACAGGTTTTGCTTCAGTT+AGG | - | chr5.2:3455156-3455175 | MS.gene21628:intron | 45.0% |
| ! | GCTGCTTCTGATTTTGCTAC+TGG | - | chr5.2:3455092-3455111 | MS.gene21628:intron | 45.0% |
| ! | GTACTTGGTGGCTCTTTACT+AGG | - | chr5.2:3458451-3458470 | MS.gene21628:intron | 45.0% |
| ! | TTGGTGAATTGAAAGCGTGG+TGG | + | chr5.2:3454803-3454822 | None:intergenic | 45.0% |
| !! | ATTTTTCTGGAGACGGTGCT+GGG | - | chr5.2:3457488-3457507 | MS.gene21628:intron | 45.0% |
| !! | CAATTGGTGAGTGCTGAAGT+TGG | - | chr5.2:3457593-3457612 | MS.gene21628:intron | 45.0% |
| !! | TGGTCATGGTGTTGCAACTT+TGG | - | chr5.2:3457973-3457992 | MS.gene21628:intron | 45.0% |
| !! | TTGTTGGGGGTACCAAATCT+AGG | + | chr5.2:3458254-3458273 | None:intergenic | 45.0% |
| !!! | CAGCTGGTGTTGTTTTCGTT+GGG | - | chr5.2:3455927-3455946 | MS.gene21628:intron | 45.0% |
| !!! | TCAGCTGGTGTTGTTTTCGT+TGG | - | chr5.2:3455926-3455945 | MS.gene21628:intron | 45.0% |
| AAAATGAAGGGGGGAAGCTG+TGG | - | chr5.2:3455846-3455865 | MS.gene21628:CDS | 50.0% | |
| AACATGAAAAGGGCCCAACC+GGG | - | chr5.2:3456476-3456495 | MS.gene21628:intron | 50.0% | |
| ACTGCAGATCAAGAGGTCAC+CGG | + | chr5.2:3456508-3456527 | None:intergenic | 50.0% | |
| ATGCAGATAGCCGTACTTGG+TGG | - | chr5.2:3458439-3458458 | MS.gene21628:intron | 50.0% | |
| CAGAAACTGCTAACTCTGCC+TGG | + | chr5.2:3457468-3457487 | None:intergenic | 50.0% | |
| CGCGGTAGTATTAGGTCACT+AGG | - | chr5.2:3457072-3457091 | MS.gene21628:intron | 50.0% | |
| CTGTTGCTGTAGCCTGTATG+AGG | + | chr5.2:3459048-3459067 | None:intergenic | 50.0% | |
| GATCCAGCTATGACTCCCAA+GGG | + | chr5.2:3457947-3457966 | None:intergenic | 50.0% | |
| GATGTCGGTGACTTAAGCAC+AGG | - | chr5.2:3455140-3455159 | MS.gene21628:intron | 50.0% | |
| GCGCAACATGTTAGATGCTC+CGG | - | chr5.2:3458812-3458831 | MS.gene21628:CDS | 50.0% | |
| GCTCTTTCTCGTCTTTGCTG+CGG | - | chr5.2:3459124-3459143 | MS.gene21628:CDS | 50.0% | |
| GGTCACTAGGATTGAGCTAG+TGG | - | chr5.2:3457085-3457104 | MS.gene21628:intron | 50.0% | |
| TGATCCAGCTATGACTCCCA+AGG | + | chr5.2:3457948-3457967 | None:intergenic | 50.0% | |
| TGTGAAGTCTCCCTGTTGGT+TGG | - | chr5.2:3458883-3458902 | MS.gene21628:CDS | 50.0% | |
| TTGACGAACTCTTGCCGTTC+AGG | - | chr5.2:3456399-3456418 | MS.gene21628:intron | 50.0% | |
| TTGAGATTGCGGAGAAGAGG+AGG | + | chr5.2:3454776-3454795 | None:intergenic | 50.0% | |
| ! | ACTAGATGAGGCATCCAGCA+GGG | + | chr5.2:3457289-3457308 | None:intergenic | 50.0% |
| ! | GTGAAGTCTCCCTGTTGGTT+GGG | - | chr5.2:3458884-3458903 | MS.gene21628:CDS | 50.0% |
| ! | TGAAGTCTCCCTGTTGGTTG+GGG | - | chr5.2:3458885-3458904 | MS.gene21628:CDS | 50.0% |
| !! | GATTTTTCTGGAGACGGTGC+TGG | - | chr5.2:3457487-3457506 | MS.gene21628:intron | 50.0% |
| AGATTGCGGAGAAGAGGAGG+AGG | + | chr5.2:3454773-3454792 | None:intergenic | 55.0% | |
| AGGGTGAAGAAGCTGCTGCA+AGG | + | chr5.2:3457928-3457947 | None:intergenic | 55.0% | |
| CACAAGGGTCCATAGCTCAG+TGG | + | chr5.2:3456542-3456561 | None:intergenic | 55.0% | |
| GCAGCAGCTTCTTCACCCTT+GGG | - | chr5.2:3457929-3457948 | MS.gene21628:intron | 55.0% | |
| GGGAGTCATAGCTGGATCAC+TGG | - | chr5.2:3457949-3457968 | MS.gene21628:intron | 55.0% | |
| GGGTGAAGAAGCTGCTGCAA+GGG | + | chr5.2:3457927-3457946 | None:intergenic | 55.0% | |
| GTCATAGCTGGATCACTGGC+TGG | - | chr5.2:3457953-3457972 | MS.gene21628:intron | 55.0% | |
| TCACCCTTGGGAGTCATAGC+TGG | - | chr5.2:3457941-3457960 | MS.gene21628:intron | 55.0% | |
| TGCAGCAGCTTCTTCACCCT+TGG | - | chr5.2:3457928-3457947 | MS.gene21628:intron | 55.0% | |
| ! | CACTAGATGAGGCATCCAGC+AGG | + | chr5.2:3457290-3457309 | None:intergenic | 55.0% |
| TTGCGGAGAAGAGGAGGAGG+AGG | + | chr5.2:3454770-3454789 | None:intergenic | 60.0% | |
| ! | GCTGGATCACTGGCTGGTCA+TGG | - | chr5.2:3457959-3457978 | MS.gene21628:intron | 60.0% |
| !! | AGAGGTCACCGGTTCGAACC+CGG | + | chr5.2:3456497-3456516 | None:intergenic | 60.0% |
| !! | TCACCGGTTCGAACCCGGTT+GGG | + | chr5.2:3456492-3456511 | None:intergenic | 60.0% |
| CTTCGGGGTCTCTACCCTGC+TGG | - | chr5.2:3457272-3457291 | MS.gene21628:intron | 65.0% | |
| !! | GTCACCGGTTCGAACCCGGT+TGG | + | chr5.2:3456493-3456512 | None:intergenic | 65.0% |
| GGGCCCAACCGGGTTCGAAC+CGG | - | chr5.2:3456486-3456505 | MS.gene21628:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 3454662 | 3459172 | 3454662 | ID=MS.gene21628 |
| chr5.2 | mRNA | 3454662 | 3459172 | 3454662 | ID=MS.gene21628.t1;Parent=MS.gene21628 |
| chr5.2 | exon | 3458993 | 3459172 | 3458993 | ID=MS.gene21628.t1.exon1;Parent=MS.gene21628.t1 |
| chr5.2 | CDS | 3458993 | 3459172 | 3458993 | ID=cds.MS.gene21628.t1;Parent=MS.gene21628.t1 |
| chr5.2 | exon | 3458662 | 3458913 | 3458662 | ID=MS.gene21628.t1.exon2;Parent=MS.gene21628.t1 |
| chr5.2 | CDS | 3458662 | 3458913 | 3458662 | ID=cds.MS.gene21628.t1;Parent=MS.gene21628.t1 |
| chr5.2 | exon | 3458147 | 3458200 | 3458147 | ID=MS.gene21628.t1.exon3;Parent=MS.gene21628.t1 |
| chr5.2 | CDS | 3458147 | 3458200 | 3458147 | ID=cds.MS.gene21628.t1;Parent=MS.gene21628.t1 |
| chr5.2 | exon | 3457868 | 3457929 | 3457868 | ID=MS.gene21628.t1.exon4;Parent=MS.gene21628.t1 |
| chr5.2 | CDS | 3457868 | 3457929 | 3457868 | ID=cds.MS.gene21628.t1;Parent=MS.gene21628.t1 |
| chr5.2 | exon | 3457414 | 3457482 | 3457414 | ID=MS.gene21628.t1.exon5;Parent=MS.gene21628.t1 |
| chr5.2 | CDS | 3457414 | 3457482 | 3457414 | ID=cds.MS.gene21628.t1;Parent=MS.gene21628.t1 |
| chr5.2 | exon | 3456790 | 3456841 | 3456790 | ID=MS.gene21628.t1.exon6;Parent=MS.gene21628.t1 |
| chr5.2 | CDS | 3456790 | 3456841 | 3456790 | ID=cds.MS.gene21628.t1;Parent=MS.gene21628.t1 |
| chr5.2 | exon | 3456493 | 3456567 | 3456493 | ID=MS.gene21628.t1.exon7;Parent=MS.gene21628.t1 |
| chr5.2 | CDS | 3456493 | 3456567 | 3456493 | ID=cds.MS.gene21628.t1;Parent=MS.gene21628.t1 |
| chr5.2 | exon | 3456236 | 3456365 | 3456236 | ID=MS.gene21628.t1.exon8;Parent=MS.gene21628.t1 |
| chr5.2 | CDS | 3456236 | 3456365 | 3456236 | ID=cds.MS.gene21628.t1;Parent=MS.gene21628.t1 |
| chr5.2 | exon | 3455840 | 3455910 | 3455840 | ID=MS.gene21628.t1.exon9;Parent=MS.gene21628.t1 |
| chr5.2 | CDS | 3455840 | 3455910 | 3455840 | ID=cds.MS.gene21628.t1;Parent=MS.gene21628.t1 |
| chr5.2 | exon | 3455342 | 3455389 | 3455342 | ID=MS.gene21628.t1.exon10;Parent=MS.gene21628.t1 |
| chr5.2 | CDS | 3455342 | 3455389 | 3455342 | ID=cds.MS.gene21628.t1;Parent=MS.gene21628.t1 |
| chr5.2 | exon | 3454662 | 3454733 | 3454662 | ID=MS.gene21628.t1.exon11;Parent=MS.gene21628.t1 |
| chr5.2 | CDS | 3454662 | 3454733 | 3454662 | ID=cds.MS.gene21628.t1;Parent=MS.gene21628.t1 |
| Gene Sequence |
| Protein sequence |
