Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22335.t1 | XP_003611045.2 | 87.3 | 332 | 39 | 1 | 1 | 332 | 1 | 329 | 5.10E-146 | 527.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22335.t1 | Q94AX5 | 77.4 | 235 | 51 | 2 | 98 | 331 | 114 | 347 | 1.2e-87 | 324.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22335.t1 | G7KAQ7 | 87.3 | 332 | 39 | 1 | 1 | 332 | 1 | 329 | 3.7e-146 | 527.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene22335 | 0.851437 | 8.88E-61 | -1.69E-46 |
| MS.gene049171 | MS.gene22335 | 0.806603 | 7.59E-50 | -1.69E-46 |
| MS.gene049217 | MS.gene22335 | 0.842729 | 2.16E-58 | -1.69E-46 |
| MS.gene049222 | MS.gene22335 | 0.826714 | 2.33E-54 | -1.69E-46 |
| MS.gene049285 | MS.gene22335 | 0.850045 | 2.19E-60 | -1.69E-46 |
| MS.gene049320 | MS.gene22335 | 0.833616 | 4.81E-56 | -1.69E-46 |
| MS.gene049351 | MS.gene22335 | 0.836567 | 8.68E-57 | -1.69E-46 |
| MS.gene049427 | MS.gene22335 | 0.857837 | 1.24E-62 | -1.69E-46 |
| MS.gene049609 | MS.gene22335 | 0.852786 | 3.67E-61 | -1.69E-46 |
| MS.gene049615 | MS.gene22335 | 0.816508 | 5.33E-52 | -1.69E-46 |
| MS.gene049661 | MS.gene22335 | 0.801665 | 8.09E-49 | -1.69E-46 |
| MS.gene049805 | MS.gene22335 | 0.882912 | 7.00E-71 | -1.69E-46 |
| MS.gene050076 | MS.gene22335 | 0.831968 | 1.24E-55 | -1.69E-46 |
| MS.gene050163 | MS.gene22335 | 0.847142 | 1.39E-59 | -1.69E-46 |
| MS.gene050165 | MS.gene22335 | 0.81656 | 5.19E-52 | -1.69E-46 |
| MS.gene050333 | MS.gene22335 | 0.816431 | 5.55E-52 | -1.69E-46 |
| MS.gene050432 | MS.gene22335 | 0.8423 | 2.81E-58 | -1.69E-46 |
| MS.gene050504 | MS.gene22335 | 0.816175 | 6.33E-52 | -1.69E-46 |
| MS.gene050518 | MS.gene22335 | 0.815343 | 9.71E-52 | -1.69E-46 |
| MS.gene050520 | MS.gene22335 | 0.814728 | 1.33E-51 | -1.69E-46 |
| MS.gene050593 | MS.gene22335 | 0.857851 | 1.23E-62 | -1.69E-46 |
| MS.gene050612 | MS.gene22335 | 0.813975 | 1.95E-51 | -1.69E-46 |
| MS.gene050670 | MS.gene22335 | 0.806231 | 9.09E-50 | -1.69E-46 |
| MS.gene050675 | MS.gene22335 | 0.832196 | 1.09E-55 | -1.69E-46 |
| MS.gene050699 | MS.gene22335 | 0.856223 | 3.72E-62 | -1.69E-46 |
| MS.gene050747 | MS.gene22335 | 0.832027 | 1.20E-55 | -1.69E-46 |
| MS.gene050767 | MS.gene22335 | 0.847295 | 1.27E-59 | -1.69E-46 |
| MS.gene050770 | MS.gene22335 | 0.847353 | 1.22E-59 | -1.69E-46 |
| MS.gene050772 | MS.gene22335 | 0.855165 | 7.58E-62 | -1.69E-46 |
| MS.gene050783 | MS.gene22335 | 0.823781 | 1.15E-53 | -1.69E-46 |
| MS.gene050950 | MS.gene22335 | 0.829606 | 4.69E-55 | -1.69E-46 |
| MS.gene050986 | MS.gene22335 | 0.825897 | 3.65E-54 | -1.69E-46 |
| MS.gene05100 | MS.gene22335 | 0.814967 | 1.18E-51 | -1.69E-46 |
| MS.gene05101 | MS.gene22335 | 0.836455 | 9.27E-57 | -1.69E-46 |
| MS.gene05105 | MS.gene22335 | 0.808579 | 2.89E-50 | -1.69E-46 |
| MS.gene051228 | MS.gene22335 | 0.805398 | 1.36E-49 | -1.69E-46 |
| MS.gene051387 | MS.gene22335 | 0.876504 | 1.32E-68 | -1.69E-46 |
| MS.gene051551 | MS.gene22335 | 0.820515 | 6.59E-53 | -1.69E-46 |
| MS.gene051666 | MS.gene22335 | 0.833918 | 4.05E-56 | -1.69E-46 |
| MS.gene051692 | MS.gene22335 | 0.86982 | 2.32E-66 | -1.69E-46 |
| MS.gene051694 | MS.gene22335 | 0.850297 | 1.86E-60 | -1.69E-46 |
| MS.gene051810 | MS.gene22335 | 0.839556 | 1.48E-57 | -1.69E-46 |
| MS.gene051858 | MS.gene22335 | 0.816436 | 5.54E-52 | -1.69E-46 |
| MS.gene052078 | MS.gene22335 | 0.800929 | 1.14E-48 | -1.69E-46 |
| MS.gene052271 | MS.gene22335 | 0.864631 | 1.06E-64 | -1.69E-46 |
| MS.gene052310 | MS.gene22335 | 0.809887 | 1.51E-50 | -1.69E-46 |
| MS.gene052322 | MS.gene22335 | 0.854093 | 1.55E-61 | -1.69E-46 |
| MS.gene052326 | MS.gene22335 | 0.807723 | 4.40E-50 | -1.69E-46 |
| MS.gene052379 | MS.gene22335 | 0.849107 | 4.00E-60 | -1.69E-46 |
| MS.gene052421 | MS.gene22335 | 0.838026 | 3.67E-57 | -1.69E-46 |
| MS.gene052481 | MS.gene22335 | 0.830532 | 2.78E-55 | -1.69E-46 |
| MS.gene052484 | MS.gene22335 | 0.834336 | 3.18E-56 | -1.69E-46 |
| MS.gene052485 | MS.gene22335 | 0.809947 | 1.47E-50 | -1.69E-46 |
| MS.gene052615 | MS.gene22335 | 0.892519 | 1.47E-74 | -1.69E-46 |
| MS.gene052982 | MS.gene22335 | 0.806284 | 8.86E-50 | -1.69E-46 |
| MS.gene053009 | MS.gene22335 | 0.809183 | 2.15E-50 | -1.69E-46 |
| MS.gene053103 | MS.gene22335 | 0.807471 | 4.97E-50 | -1.69E-46 |
| MS.gene053104 | MS.gene22335 | 0.810624 | 1.05E-50 | -1.69E-46 |
| MS.gene053107 | MS.gene22335 | 0.802992 | 4.31E-49 | -1.69E-46 |
| MS.gene053203 | MS.gene22335 | 0.805732 | 1.16E-49 | -1.69E-46 |
| MS.gene053207 | MS.gene22335 | 0.881407 | 2.46E-70 | -1.69E-46 |
| MS.gene053209 | MS.gene22335 | 0.803559 | 3.29E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene22335 | 0.883792 | 3.32E-71 | -1.69E-46 |
| MS.gene053286 | MS.gene22335 | 0.878241 | 3.29E-69 | -1.69E-46 |
| MS.gene053322 | MS.gene22335 | 0.870614 | 1.28E-66 | -1.69E-46 |
| MS.gene053436 | MS.gene22335 | 0.823358 | 1.45E-53 | -1.69E-46 |
| MS.gene053449 | MS.gene22335 | 0.809913 | 1.50E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene22335 | 0.815424 | 9.31E-52 | -1.69E-46 |
| MS.gene053579 | MS.gene22335 | 0.805497 | 1.30E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene22335 | 0.852067 | 5.89E-61 | -1.69E-46 |
| MS.gene053813 | MS.gene22335 | 0.850248 | 1.92E-60 | -1.69E-46 |
| MS.gene053915 | MS.gene22335 | 0.807388 | 5.18E-50 | -1.69E-46 |
| MS.gene054123 | MS.gene22335 | 0.807296 | 5.42E-50 | -1.69E-46 |
| MS.gene054376 | MS.gene22335 | 0.85332 | 2.58E-61 | -1.69E-46 |
| MS.gene054408 | MS.gene22335 | 0.80926 | 2.07E-50 | -1.69E-46 |
| MS.gene054595 | MS.gene22335 | 0.827427 | 1.57E-54 | -1.69E-46 |
| MS.gene054600 | MS.gene22335 | 0.849092 | 4.04E-60 | -1.69E-46 |
| MS.gene054642 | MS.gene22335 | 0.851887 | 6.62E-61 | -1.69E-46 |
| MS.gene054802 | MS.gene22335 | 0.871626 | 5.92E-67 | -1.69E-46 |
| MS.gene054803 | MS.gene22335 | 0.868275 | 7.37E-66 | -1.69E-46 |
| MS.gene054804 | MS.gene22335 | 0.875317 | 3.39E-68 | -1.69E-46 |
| MS.gene054954 | MS.gene22335 | 0.812387 | 4.35E-51 | -1.69E-46 |
| MS.gene05505 | MS.gene22335 | 0.829793 | 4.22E-55 | -1.69E-46 |
| MS.gene055206 | MS.gene22335 | 0.838532 | 2.72E-57 | -1.69E-46 |
| MS.gene055277 | MS.gene22335 | 0.828062 | 1.11E-54 | -1.69E-46 |
| MS.gene055362 | MS.gene22335 | 0.839003 | 2.05E-57 | -1.69E-46 |
| MS.gene055397 | MS.gene22335 | 0.855333 | 6.77E-62 | -1.69E-46 |
| MS.gene055412 | MS.gene22335 | 0.842202 | 2.99E-58 | -1.69E-46 |
| MS.gene055499 | MS.gene22335 | 0.867564 | 1.25E-65 | -1.69E-46 |
| MS.gene055502 | MS.gene22335 | 0.835139 | 2.00E-56 | -1.69E-46 |
| MS.gene055577 | MS.gene22335 | 0.813091 | 3.05E-51 | -1.69E-46 |
| MS.gene055636 | MS.gene22335 | 0.811408 | 7.11E-51 | -1.69E-46 |
| MS.gene055647 | MS.gene22335 | 0.891497 | 3.76E-74 | -1.69E-46 |
| MS.gene055722 | MS.gene22335 | 0.824628 | 7.28E-54 | -1.69E-46 |
| MS.gene05592 | MS.gene22335 | 0.860135 | 2.55E-63 | -1.69E-46 |
| MS.gene055941 | MS.gene22335 | 0.851696 | 7.50E-61 | -1.69E-46 |
| MS.gene056083 | MS.gene22335 | 0.842863 | 1.99E-58 | -1.69E-46 |
| MS.gene056191 | MS.gene22335 | 0.803307 | 3.71E-49 | -1.69E-46 |
| MS.gene056374 | MS.gene22335 | 0.883432 | 4.51E-71 | -1.69E-46 |
| MS.gene056407 | MS.gene22335 | 0.826696 | 2.35E-54 | -1.69E-46 |
| MS.gene056410 | MS.gene22335 | 0.807759 | 4.32E-50 | -1.69E-46 |
| MS.gene056452 | MS.gene22335 | 0.803119 | 4.06E-49 | -1.69E-46 |
| MS.gene056609 | MS.gene22335 | 0.815329 | 9.78E-52 | -1.69E-46 |
| MS.gene056657 | MS.gene22335 | 0.848724 | 5.11E-60 | -1.69E-46 |
| MS.gene056877 | MS.gene22335 | 0.812402 | 4.32E-51 | -1.69E-46 |
| MS.gene056897 | MS.gene22335 | 0.80092 | 1.15E-48 | -1.69E-46 |
| MS.gene057011 | MS.gene22335 | 0.862968 | 3.48E-64 | -1.69E-46 |
| MS.gene057123 | MS.gene22335 | 0.82349 | 1.35E-53 | -1.69E-46 |
| MS.gene057124 | MS.gene22335 | 0.819065 | 1.41E-52 | -1.69E-46 |
| MS.gene057129 | MS.gene22335 | 0.867945 | 9.41E-66 | -1.69E-46 |
| MS.gene057146 | MS.gene22335 | 0.841009 | 6.16E-58 | -1.69E-46 |
| MS.gene057196 | MS.gene22335 | 0.807358 | 5.26E-50 | -1.69E-46 |
| MS.gene057295 | MS.gene22335 | 0.828222 | 1.01E-54 | -1.69E-46 |
| MS.gene057331 | MS.gene22335 | 0.859082 | 5.29E-63 | -1.69E-46 |
| MS.gene057416 | MS.gene22335 | 0.906665 | 1.16E-80 | -1.69E-46 |
| MS.gene057749 | MS.gene22335 | 0.803794 | 2.94E-49 | -1.69E-46 |
| MS.gene057823 | MS.gene22335 | 0.81339 | 2.62E-51 | -1.69E-46 |
| MS.gene057831 | MS.gene22335 | 0.808007 | 3.83E-50 | -1.69E-46 |
| MS.gene057926 | MS.gene22335 | 0.801396 | 9.18E-49 | -1.69E-46 |
| MS.gene058006 | MS.gene22335 | 0.841629 | 4.23E-58 | -1.69E-46 |
| MS.gene058019 | MS.gene22335 | 0.888107 | 7.91E-73 | -1.69E-46 |
| MS.gene058233 | MS.gene22335 | 0.803535 | 3.33E-49 | -1.69E-46 |
| MS.gene058293 | MS.gene22335 | 0.841385 | 4.91E-58 | -1.69E-46 |
| MS.gene058323 | MS.gene22335 | 0.846777 | 1.76E-59 | -1.69E-46 |
| MS.gene058419 | MS.gene22335 | 0.84583 | 3.18E-59 | -1.69E-46 |
| MS.gene058544 | MS.gene22335 | 0.820248 | 7.58E-53 | -1.69E-46 |
| MS.gene058660 | MS.gene22335 | 0.852127 | 5.66E-61 | -1.69E-46 |
| MS.gene058838 | MS.gene22335 | 0.812865 | 3.42E-51 | -1.69E-46 |
| MS.gene05883 | MS.gene22335 | 0.843146 | 1.68E-58 | -1.69E-46 |
| MS.gene058903 | MS.gene22335 | 0.803883 | 2.82E-49 | -1.69E-46 |
| MS.gene058993 | MS.gene22335 | 0.831763 | 1.39E-55 | -1.69E-46 |
| MS.gene059022 | MS.gene22335 | 0.814334 | 1.62E-51 | -1.69E-46 |
| MS.gene059023 | MS.gene22335 | 0.802827 | 4.66E-49 | -1.69E-46 |
| MS.gene059029 | MS.gene22335 | 0.808027 | 3.79E-50 | -1.69E-46 |
| MS.gene05934 | MS.gene22335 | 0.83388 | 4.14E-56 | -1.69E-46 |
| MS.gene059536 | MS.gene22335 | 0.868216 | 7.70E-66 | -1.69E-46 |
| MS.gene059676 | MS.gene22335 | 0.828825 | 7.25E-55 | -1.69E-46 |
| MS.gene059677 | MS.gene22335 | 0.838919 | 2.16E-57 | -1.69E-46 |
| MS.gene059688 | MS.gene22335 | 0.816643 | 4.98E-52 | -1.69E-46 |
| MS.gene059692 | MS.gene22335 | 0.80627 | 8.93E-50 | -1.69E-46 |
| MS.gene059695 | MS.gene22335 | 0.810353 | 1.20E-50 | -1.69E-46 |
| MS.gene059718 | MS.gene22335 | 0.857788 | 1.29E-62 | -1.69E-46 |
| MS.gene059756 | MS.gene22335 | 0.836142 | 1.11E-56 | -1.69E-46 |
| MS.gene059902 | MS.gene22335 | 0.815134 | 1.08E-51 | -1.69E-46 |
| MS.gene059960 | MS.gene22335 | 0.867565 | 1.25E-65 | -1.69E-46 |
| MS.gene060193 | MS.gene22335 | 0.8483 | 6.69E-60 | -1.69E-46 |
| MS.gene060356 | MS.gene22335 | 0.806532 | 7.86E-50 | -1.69E-46 |
| MS.gene060403 | MS.gene22335 | 0.835142 | 1.99E-56 | -1.69E-46 |
| MS.gene060482 | MS.gene22335 | 0.817554 | 3.10E-52 | -1.69E-46 |
| MS.gene060804 | MS.gene22335 | 0.850674 | 1.46E-60 | -1.69E-46 |
| MS.gene060818 | MS.gene22335 | 0.82024 | 7.61E-53 | -1.69E-46 |
| MS.gene060835 | MS.gene22335 | 0.82534 | 4.94E-54 | -1.69E-46 |
| MS.gene060837 | MS.gene22335 | 0.811476 | 6.87E-51 | -1.69E-46 |
| MS.gene06092 | MS.gene22335 | 0.844105 | 9.29E-59 | -1.69E-46 |
| MS.gene061041 | MS.gene22335 | 0.811357 | 7.29E-51 | -1.69E-46 |
| MS.gene061134 | MS.gene22335 | 0.821059 | 4.94E-53 | -1.69E-46 |
| MS.gene061150 | MS.gene22335 | 0.862815 | 3.88E-64 | -1.69E-46 |
| MS.gene061171 | MS.gene22335 | 0.826221 | 3.06E-54 | -1.69E-46 |
| MS.gene061200 | MS.gene22335 | 0.890644 | 8.18E-74 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22335.t1 | MTR_5g009810 | 92.771 | 332 | 21 | 1 | 1 | 332 | 1 | 329 | 0.0 | 573 |
| MS.gene22335.t1 | MTR_1g046730 | 44.076 | 211 | 86 | 5 | 140 | 333 | 150 | 345 | 5.29e-44 | 155 |
| MS.gene22335.t1 | MTR_7g079850 | 35.789 | 190 | 105 | 4 | 148 | 331 | 82 | 260 | 7.84e-23 | 96.7 |
| MS.gene22335.t1 | MTR_1g111390 | 33.971 | 209 | 112 | 5 | 141 | 332 | 7 | 206 | 2.58e-21 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22335.t1 | AT1G64150 | 69.231 | 273 | 69 | 4 | 73 | 331 | 76 | 347 | 1.06e-108 | 322 |
| MS.gene22335.t1 | AT4G13590 | 42.365 | 203 | 101 | 5 | 139 | 332 | 143 | 338 | 3.01e-42 | 150 |
| MS.gene22335.t1 | AT4G13590 | 42.365 | 203 | 101 | 5 | 139 | 332 | 143 | 338 | 3.11e-42 | 150 |
| MS.gene22335.t1 | AT5G36290 | 34.343 | 198 | 114 | 3 | 144 | 335 | 87 | 274 | 1.80e-23 | 98.6 |
| MS.gene22335.t1 | AT5G36290 | 34.343 | 198 | 114 | 3 | 144 | 335 | 87 | 274 | 1.80e-23 | 98.6 |
| MS.gene22335.t1 | AT1G68650 | 33.810 | 210 | 126 | 3 | 135 | 334 | 1 | 207 | 2.12e-21 | 91.7 |
| MS.gene22335.t1 | AT1G25520 | 32.864 | 213 | 114 | 6 | 141 | 334 | 7 | 209 | 2.24e-18 | 83.2 |
Find 57 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAATTCAATTCCTATATT+TGG | 0.111357 | 5.4:+4311861 | MS.gene22335:CDS |
| TGGTGGCTCTTAAATGGTTT+TGG | 0.262359 | 5.4:-4311446 | None:intergenic |
| GAAAAGTGGTGGCTCTTAAA+TGG | 0.270841 | 5.4:-4311452 | None:intergenic |
| TCGGAGAAGGTAACTTCTTC+TGG | 0.275094 | 5.4:+4315222 | MS.gene22335:CDS |
| TGCAGCAGCTTCTTCACCCT+TGG | 0.304179 | 5.4:+4314663 | MS.gene22335:CDS |
| TTGACGAACTCTTGCCGTTC+AGG | 0.307648 | 5.4:+4313135 | MS.gene22335:CDS |
| ATCGACTTCAGGTGTACTTC+GGG | 0.314626 | 5.4:+4313994 | MS.gene22335:intron |
| GTACTTGGTGGCTCTTTACT+AGG | 0.355968 | 5.4:+4315189 | MS.gene22335:CDS |
| TATTGCTGCTGTTTGCCTAT+TGG | 0.359627 | 5.4:+4313761 | MS.gene22335:CDS |
| TCACCCTTGGGAGTCATAGC+TGG | 0.372547 | 5.4:+4314676 | MS.gene22335:CDS |
| GCAGCAGCTTCTTCACCCTT+GGG | 0.388248 | 5.4:+4314664 | MS.gene22335:CDS |
| CGCACTTCAACATACTTATC+CGG | 0.403598 | 5.4:+4311809 | MS.gene22335:CDS |
| TTGAGATTGCAGAGAGGAGG+AGG | 0.411369 | 5.4:-4311518 | None:intergenic |
| TTGCAGAGAGGAGGAGGAGG+AGG | 0.420498 | 5.4:-4311512 | None:intergenic |
| TCACCAACATCTCCAAATAT+AGG | 0.423227 | 5.4:-4311873 | None:intergenic |
| ATTCCTATATTTGGAGATGT+TGG | 0.440338 | 5.4:+4311870 | MS.gene22335:CDS |
| AATCGACTTCAGGTGTACTT+CGG | 0.440864 | 5.4:+4313993 | MS.gene22335:intron |
| AGATTGCAGAGAGGAGGAGG+AGG | 0.442610 | 5.4:-4311515 | None:intergenic |
| CTTCGGGGTCTCTACCCTGC+TGG | 0.449149 | 5.4:+4314010 | MS.gene22335:CDS |
| ACACATTCTGTGTTGCCAAT+TGG | 0.451928 | 5.4:-4311722 | None:intergenic |
| ACAGCAGCAATATCATCAAT+AGG | 0.453364 | 5.4:-4313750 | None:intergenic |
| TACCGATTCTCAATGCCAAT+TGG | 0.470082 | 5.4:+4311707 | MS.gene22335:CDS |
| TGGTCATGGTGTTGCAACTT+TGG | 0.476822 | 5.4:+4314708 | MS.gene22335:CDS |
| TGCCAATTGGCATTGAGAAT+CGG | 0.485672 | 5.4:-4311709 | None:intergenic |
| CACTAGATGAGGCATCCAGC+AGG | 0.488503 | 5.4:-4314025 | None:intergenic |
| TATATGCAGATAGCCGTACT+TGG | 0.497430 | 5.4:+4315174 | MS.gene22335:intron |
| ACTTCAGCACTCACCAATTG+TGG | 0.507264 | 5.4:-4314328 | None:intergenic |
| TAGTAAAGAGCCACCAAGTA+CGG | 0.507339 | 5.4:-4315187 | None:intergenic |
| GGGAGTCATAGCTGGATCAC+TGG | 0.523241 | 5.4:+4314684 | MS.gene22335:CDS |
| TCTTCTGATGATAGTGATGA+TGG | 0.527094 | 5.4:+4311744 | MS.gene22335:CDS |
| GTCATAGCTGGATCACTGGC+TGG | 0.529444 | 5.4:+4314688 | MS.gene22335:CDS |
| GCTGGATCACTGGCTGGTCA+TGG | 0.529965 | 5.4:+4314694 | MS.gene22335:CDS |
| GATGTTGGTGACTTAAGCAC+AGG | 0.539954 | 5.4:+4311885 | MS.gene22335:CDS |
| ACTGTCATATCTGTCGCTCT+AGG | 0.541366 | 5.4:+4313095 | MS.gene22335:CDS |
| TACTTGGTGGCTCTTTACTA+GGG | 0.542656 | 5.4:+4315190 | MS.gene22335:CDS |
| AATTTGAGATTGCAGAGAGG+AGG | 0.544064 | 5.4:-4311521 | None:intergenic |
| AAATCAGAAGCAGCAACTGC+CGG | 0.549140 | 5.4:-4311828 | None:intergenic |
| AAAATCAGATGATGAACAGA+AGG | 0.549624 | 5.4:+4314055 | MS.gene22335:CDS |
| GGGTGAAGAAGCTGCTGCAA+GGG | 0.562488 | 5.4:-4314659 | None:intergenic |
| AGGGTGAAGAAGCTGCTGCA+AGG | 0.572131 | 5.4:-4314660 | None:intergenic |
| ATGCAGATAGCCGTACTTGG+TGG | 0.574843 | 5.4:+4315177 | MS.gene22335:intron |
| TTAGCAGCTAGAAATTCAGC+TGG | 0.576869 | 5.4:+4312630 | MS.gene22335:CDS |
| TGATCCAGCTATGACTCCCA+AGG | 0.589560 | 5.4:-4314680 | None:intergenic |
| TTCGGCAACAGAGTCATGAT+CGG | 0.598041 | 5.4:-4311682 | None:intergenic |
| AAAAGTGCTGACAATTGTGC+TGG | 0.600725 | 5.4:-4314262 | None:intergenic |
| ATCAGATGATGAACAGAAGG+AGG | 0.612938 | 5.4:+4314058 | MS.gene22335:CDS |
| ACTAGATGAGGCATCCAGCA+GGG | 0.613791 | 5.4:-4314024 | None:intergenic |
| AGGTGGTGAAAGATGAAAAG+TGG | 0.629418 | 5.4:-4311466 | None:intergenic |
| GGAAGAGGATATAAGTGAGG+TGG | 0.632300 | 5.4:-4311483 | None:intergenic |
| GGTAATTTGAGATTGCAGAG+AGG | 0.647329 | 5.4:-4311524 | None:intergenic |
| AATGGAAGAGGATATAAGTG+AGG | 0.651009 | 5.4:-4311486 | None:intergenic |
| GATCCAGCTATGACTCCCAA+GGG | 0.660586 | 5.4:-4314679 | None:intergenic |
| ATGTTGAAGTGCGAAGAACG+CGG | 0.678767 | 5.4:-4311799 | None:intergenic |
| TCGACTTCAGGTGTACTTCG+GGG | 0.682056 | 5.4:+4313995 | MS.gene22335:intron |
| ATGTTGGTGAATTGAAAGCG+TGG | 0.711543 | 5.4:-4311548 | None:intergenic |
| TGGTGAAAGATGAAAAGTGG+TGG | 0.722848 | 5.4:-4311463 | None:intergenic |
| TTGGTGAATTGAAAGCGTGG+TGG | 0.759701 | 5.4:-4311545 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAGAATAATAAAAATAAAT+AGG | - | chr5.4:4313032-4313051 | None:intergenic | 10.0% |
| !!! | ATTTTCATTTGTAATAATAT+TGG | - | chr5.4:4311973-4311992 | None:intergenic | 10.0% |
| !! | ACAATAAAATATAAATCCAA+AGG | - | chr5.4:4313585-4313604 | None:intergenic | 15.0% |
| !! | AGTGAATAGAATTAAAAAAA+TGG | - | chr5.4:4314138-4314157 | None:intergenic | 15.0% |
| !! | ATTATGATAAAACTGTTATA+TGG | - | chr5.4:4313422-4313441 | None:intergenic | 15.0% |
| !! | ATTGTAATTATTAAAGTAAC+AGG | - | chr5.4:4311935-4311954 | None:intergenic | 15.0% |
| !! | GTGAATAGAATTAAAAAAAT+GGG | - | chr5.4:4314137-4314156 | None:intergenic | 15.0% |
| !! | TGTAAAAATTAACATGAAAA+GGG | + | chr5.4:4313203-4313222 | MS.gene22335:intron | 15.0% |
| !! | TTGTAAAAATTAACATGAAA+AGG | + | chr5.4:4313202-4313221 | MS.gene22335:intron | 15.0% |
| !! | TTGTAATTATTAAAGTAACA+GGG | - | chr5.4:4311934-4311953 | None:intergenic | 15.0% |
| !!! | ATAATATTTTCTAGAAAACA+TGG | - | chr5.4:4313543-4313562 | None:intergenic | 15.0% |
| !!! | GAAAGATAATTATTTTTTAG+AGG | + | chr5.4:4312984-4313003 | MS.gene22335:intron | 15.0% |
| !!! | TTTTAAAACAGAAAATGTAA+AGG | - | chr5.4:4313951-4313970 | None:intergenic | 15.0% |
| !! | AAATAGAAACATAGAGATAA+AGG | - | chr5.4:4313166-4313185 | None:intergenic | 20.0% |
| !! | ACAACTTAGAATAATGAAAT+TGG | + | chr5.4:4312815-4312834 | MS.gene22335:intron | 20.0% |
| !! | ATTGATGAGATAAAAATGAA+GGG | + | chr5.4:4312554-4312573 | MS.gene22335:intron | 20.0% |
| !! | GTATATCTCTAAATAACTTT+GGG | + | chr5.4:4315130-4315149 | MS.gene22335:intron | 20.0% |
| !! | GTATTACAAGTTATAAAGAA+TGG | + | chr5.4:4313671-4313690 | MS.gene22335:intron | 20.0% |
| !! | TAAAATATAAATCCAAAGGA+AGG | - | chr5.4:4313581-4313600 | None:intergenic | 20.0% |
| !! | TAAACTTTCCATAATAGTTA+AGG | - | chr5.4:4315061-4315080 | None:intergenic | 20.0% |
| !! | TATTGATGAGATAAAAATGA+AGG | + | chr5.4:4312553-4312572 | MS.gene22335:intron | 20.0% |
| !! | TGTATATCTCTAAATAACTT+TGG | + | chr5.4:4315129-4315148 | MS.gene22335:intron | 20.0% |
| !! | TTGAATTCAATTCCTATATT+TGG | + | chr5.4:4311861-4311880 | MS.gene22335:CDS | 20.0% |
| !!! | AAACACAAATGCAATTTTTT+TGG | - | chr5.4:4313908-4313927 | None:intergenic | 20.0% |
| !!! | AACACAAATGCAATTTTTTT+GGG | - | chr5.4:4313907-4313926 | None:intergenic | 20.0% |
| !!! | AATACAACATCAAATTCTTT+TGG | + | chr5.4:4313439-4313458 | MS.gene22335:intron | 20.0% |
| !!! | ATACAACATCAAATTCTTTT+GGG | + | chr5.4:4313440-4313459 | MS.gene22335:intron | 20.0% |
| !!! | ATGTAATAGTTTGTTTGATA+GGG | - | chr5.4:4314449-4314468 | None:intergenic | 20.0% |
| !!! | ATTTTGTTTTTTGATCTTGT+TGG | - | chr5.4:4315008-4315027 | None:intergenic | 20.0% |
| !!! | CGATTTGTAATAGAATTTTA+TGG | - | chr5.4:4314367-4314386 | None:intergenic | 20.0% |
| !!! | TAAAAAAGTACTTGTATATC+TGG | - | chr5.4:4314112-4314131 | None:intergenic | 20.0% |
| !!! | TCAATTAATTTGCTTGTTTT+TGG | + | chr5.4:4313062-4313081 | MS.gene22335:intron | 20.0% |
| !!! | TCTATGTTTCTATTTTTGAA+TGG | + | chr5.4:4313171-4313190 | MS.gene22335:intron | 20.0% |
| !!! | TTTTGTTTTTTGATCTTGTT+GGG | - | chr5.4:4315007-4315026 | None:intergenic | 20.0% |
| ! | AAAACAAAGAACAAAACACA+AGG | - | chr5.4:4312721-4312740 | None:intergenic | 25.0% |
| ! | AAACAAAGAACAAAACACAA+GGG | - | chr5.4:4312720-4312739 | None:intergenic | 25.0% |
| ! | AACCAAATGCAAAACAATAA+TGG | + | chr5.4:4312469-4312488 | MS.gene22335:intron | 25.0% |
| ! | AATGAAATGAAGTTGAAGAT+AGG | - | chr5.4:4311603-4311622 | None:intergenic | 25.0% |
| ! | AGCAATATAATGAACACTAT+TGG | + | chr5.4:4313344-4313363 | MS.gene22335:intron | 25.0% |
| ! | AGTAATGAGATTTGAACATA+TGG | - | chr5.4:4313876-4313895 | None:intergenic | 25.0% |
| ! | ATCAAACAAACTATTACATG+AGG | + | chr5.4:4314450-4314469 | MS.gene22335:intron | 25.0% |
| ! | ATGCTATAAAGGCTTAATTA+AGG | - | chr5.4:4312046-4312065 | None:intergenic | 25.0% |
| ! | ATTGACACATCTTCTAAATA+TGG | + | chr5.4:4314748-4314767 | MS.gene22335:intron | 25.0% |
| ! | CGAAAATGAAAATACATTTG+AGG | - | chr5.4:4311641-4311660 | None:intergenic | 25.0% |
| ! | CTGATCTGAATAATATTCTT+AGG | + | chr5.4:4313643-4313662 | MS.gene22335:intron | 25.0% |
| ! | GATGAAAATAAATCTACATG+AGG | + | chr5.4:4315031-4315050 | MS.gene22335:intron | 25.0% |
| ! | TCAAACAAACTATTACATGA+GGG | + | chr5.4:4314451-4314470 | MS.gene22335:intron | 25.0% |
| ! | TGATAAAACTGTTATATGGT+TGG | - | chr5.4:4313418-4313437 | None:intergenic | 25.0% |
| ! | TTGACACATCTTCTAAATAT+GGG | + | chr5.4:4314749-4314768 | MS.gene22335:intron | 25.0% |
| ! | TTGATGAGATAAAAATGAAG+GGG | + | chr5.4:4312555-4312574 | MS.gene22335:intron | 25.0% |
| !! | ATGTATTTTCATTTTCGCAT+AGG | + | chr5.4:4311644-4311663 | MS.gene22335:intron | 25.0% |
| !! | CAAATTTGGATTTTCCAAAA+TGG | + | chr5.4:4314859-4314878 | MS.gene22335:intron | 25.0% |
| !! | CTGACTTGAATCAATTAATT+TGG | + | chr5.4:4314500-4314519 | MS.gene22335:intron | 25.0% |
| !! | TGTATTTTCATTTTCGCATA+GGG | + | chr5.4:4311645-4311664 | MS.gene22335:intron | 25.0% |
| !! | TTCAATTCACCAACATTTTT+CGG | + | chr5.4:4311555-4311574 | MS.gene22335:CDS | 25.0% |
| !! | TTTCTAGAAAACATGGAATT+TGG | - | chr5.4:4313536-4313555 | None:intergenic | 25.0% |
| !!! | AAATCATTTTTCTCCACAAT+TGG | + | chr5.4:4314315-4314334 | MS.gene22335:CDS | 25.0% |
| !!! | CATGTAATAGTTTGTTTGAT+AGG | - | chr5.4:4314450-4314469 | None:intergenic | 25.0% |
| !!! | TCATTTATTTAGGTCTTGTT+TGG | + | chr5.4:4312013-4312032 | MS.gene22335:intron | 25.0% |
| !!! | TGTTTTGTTCTTTGTTTTGA+AGG | + | chr5.4:4312723-4312742 | MS.gene22335:intron | 25.0% |
| !!! | TTCCATTATTGTTTTGCATT+TGG | - | chr5.4:4312474-4312493 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTTGATCTTGTTG+GGG | - | chr5.4:4315006-4315025 | None:intergenic | 25.0% |
| AAAATCAGATGATGAACAGA+AGG | + | chr5.4:4314055-4314074 | MS.gene22335:CDS | 30.0% | |
| AAGCCTTTATAGCATAATGT+TGG | + | chr5.4:4312051-4312070 | MS.gene22335:intron | 30.0% | |
| ACAAGACCTAAATAAATGAC+CGG | - | chr5.4:4312012-4312031 | None:intergenic | 30.0% | |
| ACAATATCACTAGACTTCAA+TGG | + | chr5.4:4312871-4312890 | MS.gene22335:intron | 30.0% | |
| AGATAAAGGAAAAACCTGAA+CGG | - | chr5.4:4313152-4313171 | None:intergenic | 30.0% | |
| AGGAGGTAATATTTGGTATT+TGG | + | chr5.4:4314075-4314094 | MS.gene22335:intron | 30.0% | |
| AGTAGTATTTCATTACGCTT+CGG | + | chr5.4:4314824-4314843 | MS.gene22335:intron | 30.0% | |
| ATTCCTATATTTGGAGATGT+TGG | + | chr5.4:4311870-4311889 | MS.gene22335:CDS | 30.0% | |
| CATCCAACATTATGCTATAA+AGG | - | chr5.4:4312057-4312076 | None:intergenic | 30.0% | |
| GAGGAAAACCTTAACTATTA+TGG | + | chr5.4:4315050-4315069 | MS.gene22335:intron | 30.0% | |
| GCTATCTGCATATAAAAGAA+AGG | - | chr5.4:4315168-4315187 | None:intergenic | 30.0% | |
| GGACTAAGATAGTTTATGTA+AGG | + | chr5.4:4313850-4313869 | MS.gene22335:intron | 30.0% | |
| TAGAATGTTTATAAAGCACG+TGG | - | chr5.4:4314910-4314929 | None:intergenic | 30.0% | |
| TCAGATGTATTCGAAGAATT+TGG | + | chr5.4:4312529-4312548 | MS.gene22335:intron | 30.0% | |
| TGACACATCTTCTAAATATG+GGG | + | chr5.4:4314750-4314769 | MS.gene22335:intron | 30.0% | |
| TGATGAGATAAAAATGAAGG+GGG | + | chr5.4:4312556-4312575 | MS.gene22335:intron | 30.0% | |
| TTACTTCCGGTCATTTATTT+AGG | + | chr5.4:4312003-4312022 | MS.gene22335:intron | 30.0% | |
| TTCTTTCGAACTCATCTAAT+AGG | + | chr5.4:4313695-4313714 | MS.gene22335:intron | 30.0% | |
| TTGAAGTCTAGTGATATTGT+TGG | - | chr5.4:4312871-4312890 | None:intergenic | 30.0% | |
| TTGCATCAACTTATCAACAA+TGG | - | chr5.4:4312767-4312786 | None:intergenic | 30.0% | |
| ! | AATTGCATTTGTGTTTGCTA+TGG | + | chr5.4:4313912-4313931 | MS.gene22335:intron | 30.0% |
| ! | CTGATATTTTTCTCTGAACT+GGG | + | chr5.4:4312367-4312386 | MS.gene22335:CDS | 30.0% |
| ! | GATTTTTGTTGCACTTTAGT+TGG | - | chr5.4:4314885-4314904 | None:intergenic | 30.0% |
| ! | TCAATTCACCAACATTTTTC+GGG | + | chr5.4:4311556-4311575 | MS.gene22335:CDS | 30.0% |
| ! | TCTGTTCATCATCTGATTTT+TGG | - | chr5.4:4314055-4314074 | None:intergenic | 30.0% |
| ! | TTAAGATTTCAATCGACTTC+AGG | + | chr5.4:4313983-4314002 | MS.gene22335:intron | 30.0% |
| ! | TTAGCAGTTTCTGATTTTTC+TGG | + | chr5.4:4314213-4314232 | MS.gene22335:CDS | 30.0% |
| ! | TTTACTAGGGACATTTTTGT+CGG | + | chr5.4:4315203-4315222 | MS.gene22335:CDS | 30.0% |
| !! | AGTTTGTTTGATAGGGATTT+TGG | - | chr5.4:4314442-4314461 | None:intergenic | 30.0% |
| !! | ATTGTTTTATGCTCTATCAC+AGG | + | chr5.4:4312336-4312355 | MS.gene22335:intron | 30.0% |
| !! | TCTAATAGGTTAATTTGCAC+AGG | + | chr5.4:4313709-4313728 | MS.gene22335:intron | 30.0% |
| !! | TTTGGAGCAAGATGTTTTTA+TGG | - | chr5.4:4314424-4314443 | None:intergenic | 30.0% |
| !!! | CTGTTTTAAAATTGAACACG+TGG | + | chr5.4:4313960-4313979 | MS.gene22335:intron | 30.0% |
| !!! | TAATTTGCTTGTTTTTGGCA+GGG | + | chr5.4:4313067-4313086 | MS.gene22335:intron | 30.0% |
| !!! | TTAATTTGCTTGTTTTTGGC+AGG | + | chr5.4:4313066-4313085 | MS.gene22335:intron | 30.0% |
| !!! | TTGTTTTTTGATCTTGTTGG+GGG | - | chr5.4:4315005-4315024 | None:intergenic | 30.0% |
| AAGCTATCCTGAAGAGTTTA+CGG | + | chr5.4:4312138-4312157 | MS.gene22335:intron | 35.0% | |
| AATGGAAGAGGATATAAGTG+AGG | - | chr5.4:4311489-4311508 | None:intergenic | 35.0% | |
| ACAGCAGCAATATCATCAAT+AGG | - | chr5.4:4313753-4313772 | None:intergenic | 35.0% | |
| ACCAGAGATAAACATCACAA+GGG | - | chr5.4:4313294-4313313 | None:intergenic | 35.0% | |
| ATGGAGGTGAATTTACCAAT+AGG | - | chr5.4:4313779-4313798 | None:intergenic | 35.0% | |
| CTTATTTCCGTAAACTCTTC+AGG | - | chr5.4:4312148-4312167 | None:intergenic | 35.0% | |
| GAACAGAAGGAGGTAATATT+TGG | + | chr5.4:4314068-4314087 | MS.gene22335:intron | 35.0% | |
| GCATTTGTACAAAACTCTTC+AGG | + | chr5.4:4312932-4312951 | MS.gene22335:intron | 35.0% | |
| GGACATATCAAAAGTGAACA+TGG | + | chr5.4:4313321-4313340 | MS.gene22335:intron | 35.0% | |
| GGGAACAACAAGTACAAATT+TGG | + | chr5.4:4314845-4314864 | MS.gene22335:intron | 35.0% | |
| GTACCAAATCTAGGTCATTA+GGG | - | chr5.4:4314983-4315002 | None:intergenic | 35.0% | |
| GTAGTATTTCATTACGCTTC+GGG | + | chr5.4:4314825-4314844 | MS.gene22335:intron | 35.0% | |
| TACCAGAGATAAACATCACA+AGG | - | chr5.4:4313295-4313314 | None:intergenic | 35.0% | |
| TATGTAAACGCGGTAGTATT+AGG | + | chr5.4:4313802-4313821 | MS.gene22335:intron | 35.0% | |
| TCACCAACATCTCCAAATAT+AGG | - | chr5.4:4311876-4311895 | None:intergenic | 35.0% | |
| TCAGATCAGATAGTCAGATT+AGG | - | chr5.4:4313632-4313651 | None:intergenic | 35.0% | |
| TGAAACTGCTTAAAGAGTTC+CGG | + | chr5.4:4314944-4314963 | MS.gene22335:intron | 35.0% | |
| TGAGTGTTTGATGTTTATGC+AGG | + | chr5.4:4312602-4312621 | MS.gene22335:intron | 35.0% | |
| TGTTTATCTCTGGTATGCAT+TGG | + | chr5.4:4313300-4313319 | MS.gene22335:intron | 35.0% | |
| TTTACTTCTACTCCTTCCTT+TGG | + | chr5.4:4313566-4313585 | MS.gene22335:intron | 35.0% | |
| ! | AATGTCAACTCTGTTACTTC+CGG | + | chr5.4:4311990-4312009 | MS.gene22335:intron | 35.0% |
| ! | CTGTTATATGGTTGGTCAAA+AGG | - | chr5.4:4313410-4313429 | None:intergenic | 35.0% |
| ! | GCATTGAGAATCGGTATTTT+CGG | - | chr5.4:4311703-4311722 | None:intergenic | 35.0% |
| ! | GCTGATATTTTTCTCTGAAC+TGG | + | chr5.4:4312366-4312385 | MS.gene22335:CDS | 35.0% |
| ! | TCTTCTGATGATAGTGATGA+TGG | + | chr5.4:4311744-4311763 | MS.gene22335:CDS | 35.0% |
| ! | TGACGATGTTTTCTATGCAA+TGG | + | chr5.4:4314168-4314187 | MS.gene22335:intron | 35.0% |
| !! | CTTAGTTTTTGTTGCTGAGT+GGG | + | chr5.4:4314287-4314306 | MS.gene22335:CDS | 35.0% |
| !! | GTTGTTTTCATTGGGACATT+TGG | + | chr5.4:4312654-4312673 | MS.gene22335:CDS | 35.0% |
| !! | GTTTCTGATTTTTCTGGAGA+CGG | + | chr5.4:4314219-4314238 | MS.gene22335:CDS | 35.0% |
| !! | TAGGTTAATTTGCACAGGTT+TGG | + | chr5.4:4313714-4313733 | MS.gene22335:intron | 35.0% |
| !! | TCTTAGTTTTTGTTGCTGAG+TGG | + | chr5.4:4314286-4314305 | MS.gene22335:CDS | 35.0% |
| !! | TTAGTTTTTGTTGCTGAGTG+GGG | + | chr5.4:4314288-4314307 | MS.gene22335:CDS | 35.0% |
| !!! | AGACTGTTTTGGAGAACTTA+TGG | - | chr5.4:4312206-4312225 | None:intergenic | 35.0% |
| !!! | TTTTTGGCTATCACTAGATG+AGG | - | chr5.4:4314039-4314058 | None:intergenic | 35.0% |
| ACACATTCTGTGTTGCCAAT+TGG | - | chr5.4:4311725-4311744 | None:intergenic | 40.0% | |
| ACCCTTGTGATGTTTATCTC+TGG | + | chr5.4:4313290-4313309 | MS.gene22335:intron | 40.0% | |
| AGGTGGTGAAAGATGAAAAG+TGG | - | chr5.4:4311469-4311488 | None:intergenic | 40.0% | |
| ATCAGATGATGAACAGAAGG+AGG | + | chr5.4:4314058-4314077 | MS.gene22335:CDS | 40.0% | |
| ATGAAGTTGAAGATAGGTGC+AGG | - | chr5.4:4311597-4311616 | None:intergenic | 40.0% | |
| ATGCAACAGTTTCGACATCA+AGG | - | chr5.4:4312260-4312279 | None:intergenic | 40.0% | |
| CAATGGTTCCTACATTAACC+AGG | + | chr5.4:4314185-4314204 | MS.gene22335:intron | 40.0% | |
| CAGGCTTATATTGTGTCTAG+AGG | + | chr5.4:4312951-4312970 | MS.gene22335:intron | 40.0% | |
| CCTCCATGTTTATGTAAACG+CGG | + | chr5.4:4313792-4313811 | MS.gene22335:intron | 40.0% | |
| CGCACTTCAACATACTTATC+CGG | + | chr5.4:4311809-4311828 | MS.gene22335:CDS | 40.0% | |
| CTACCGCGTTTACATAAACA+TGG | - | chr5.4:4313798-4313817 | None:intergenic | 40.0% | |
| CTTCCCTAATGACCTAGATT+TGG | + | chr5.4:4314977-4314996 | MS.gene22335:intron | 40.0% | |
| GAAAAGTGGTGGCTCTTAAA+TGG | - | chr5.4:4311455-4311474 | None:intergenic | 40.0% | |
| GGTACCAAATCTAGGTCATT+AGG | - | chr5.4:4314984-4315003 | None:intergenic | 40.0% | |
| TAACTCTGCCTGGTTAATGT+AGG | - | chr5.4:4314196-4314215 | None:intergenic | 40.0% | |
| TAGTAAAGAGCCACCAAGTA+CGG | - | chr5.4:4315190-4315209 | None:intergenic | 40.0% | |
| TATATGCAGATAGCCGTACT+TGG | + | chr5.4:4315174-4315193 | MS.gene22335:intron | 40.0% | |
| TCGAATACATCTGAACAGAG+AGG | - | chr5.4:4312523-4312542 | None:intergenic | 40.0% | |
| TGATGCAATGCAAGCAATTG+TGG | + | chr5.4:4312779-4312798 | MS.gene22335:intron | 40.0% | |
| TGGTGAAAGATGAAAAGTGG+TGG | - | chr5.4:4311466-4311485 | None:intergenic | 40.0% | |
| TTAGCAGCTAGAAATTCAGC+TGG | + | chr5.4:4312630-4312649 | MS.gene22335:CDS | 40.0% | |
| ! | AATCGACTTCAGGTGTACTT+CGG | + | chr5.4:4313993-4314012 | MS.gene22335:intron | 40.0% |
| ! | AATTTGAGATTGCAGAGAGG+AGG | - | chr5.4:4311524-4311543 | None:intergenic | 40.0% |
| ! | ATGTTGGTGAATTGAAAGCG+TGG | - | chr5.4:4311551-4311570 | None:intergenic | 40.0% |
| ! | CAACACTAGTGAGACTGTTT+TGG | - | chr5.4:4312217-4312236 | None:intergenic | 40.0% |
| ! | GGTAATTTGAGATTGCAGAG+AGG | - | chr5.4:4311527-4311546 | None:intergenic | 40.0% |
| ! | TACTTGGTGGCTCTTTACTA+GGG | + | chr5.4:4315190-4315209 | MS.gene22335:CDS | 40.0% |
| ! | TATTGCTGCTGTTTGCCTAT+TGG | + | chr5.4:4313761-4313780 | MS.gene22335:CDS | 40.0% |
| ! | TGCACTTTAGTTGGCCATTT+TGG | - | chr5.4:4314876-4314895 | None:intergenic | 40.0% |
| ! | TGCCAATTGGCATTGAGAAT+CGG | - | chr5.4:4311712-4311731 | None:intergenic | 40.0% |
| ! | TGGTGGCTCTTAAATGGTTT+TGG | - | chr5.4:4311449-4311468 | None:intergenic | 40.0% |
| !! | AAAAGTGCTGACAATTGTGC+TGG | - | chr5.4:4314265-4314284 | None:intergenic | 40.0% |
| !! | TACCGATTCTCAATGCCAAT+TGG | + | chr5.4:4311707-4311726 | MS.gene22335:CDS | 40.0% |
| !!! | CAACATTTTTCGGGCTACAA+CGG | + | chr5.4:4311565-4311584 | MS.gene22335:CDS | 40.0% |
| !!! | CAGCTGGTGTTGTTTTCATT+GGG | + | chr5.4:4312646-4312665 | MS.gene22335:CDS | 40.0% |
| !!! | TCAGCTGGTGTTGTTTTCAT+TGG | + | chr5.4:4312645-4312664 | MS.gene22335:CDS | 40.0% |
| AAAAATGAAGGGGGAAGCTC+TGG | + | chr5.4:4312565-4312584 | MS.gene22335:intron | 45.0% | |
| AAATCAGAAGCAGCAACTGC+CGG | - | chr5.4:4311831-4311850 | None:intergenic | 45.0% | |
| AATGCTCTACCACTGAGCTA+TGG | + | chr5.4:4313267-4313286 | MS.gene22335:intron | 45.0% | |
| ACTGTCATATCTGTCGCTCT+AGG | + | chr5.4:4313095-4313114 | MS.gene22335:CDS | 45.0% | |
| ACTTCAGCACTCACCAATTG+TGG | - | chr5.4:4314331-4314350 | None:intergenic | 45.0% | |
| AGGAGGAGGAAAAATGGAAG+AGG | - | chr5.4:4311501-4311520 | None:intergenic | 45.0% | |
| ATGTTGAAGTGCGAAGAACG+CGG | - | chr5.4:4311802-4311821 | None:intergenic | 45.0% | |
| CCGCGTTTACATAAACATGG+AGG | - | chr5.4:4313795-4313814 | None:intergenic | 45.0% | |
| CGTTGTAGCCCGAAAAATGT+TGG | - | chr5.4:4311567-4311586 | None:intergenic | 45.0% | |
| GCATTTGACTGCAGATCAAG+AGG | - | chr5.4:4313252-4313271 | None:intergenic | 45.0% | |
| GGAAGAGGATATAAGTGAGG+TGG | - | chr5.4:4311486-4311505 | None:intergenic | 45.0% | |
| TAACATGAAAAGGGCCCAAC+CGG | + | chr5.4:4313212-4313231 | MS.gene22335:intron | 45.0% | |
| TAGGATTGAGCTAGTGGTGA+AGG | + | chr5.4:4313829-4313848 | MS.gene22335:intron | 45.0% | |
| TCGGAGAAGGTAACTTCTTC+TGG | + | chr5.4:4315222-4315241 | MS.gene22335:CDS | 45.0% | |
| TGCAAGGGCTAAATAGTAGG+AGG | - | chr5.4:4314647-4314666 | None:intergenic | 45.0% | |
| TGCTGCAAGGGCTAAATAGT+AGG | - | chr5.4:4314650-4314669 | None:intergenic | 45.0% | |
| TTAGGGAAGAGATAGCTCAC+CGG | - | chr5.4:4314966-4314985 | None:intergenic | 45.0% | |
| TTCGGCAACAGAGTCATGAT+CGG | - | chr5.4:4311685-4311704 | None:intergenic | 45.0% | |
| ! | AGGGACATTTTTGTCGGAGA+AGG | + | chr5.4:4315209-4315228 | MS.gene22335:CDS | 45.0% |
| ! | ATCGACTTCAGGTGTACTTC+GGG | + | chr5.4:4313994-4314013 | MS.gene22335:intron | 45.0% |
| ! | GCACAGGTTTTGCTTCAGTT+AGG | + | chr5.4:4311901-4311920 | MS.gene22335:intron | 45.0% |
| ! | GCTGCTTCTGATTTTGCTAC+TGG | + | chr5.4:4311837-4311856 | MS.gene22335:CDS | 45.0% |
| ! | GTACTTGGTGGCTCTTTACT+AGG | + | chr5.4:4315189-4315208 | MS.gene22335:CDS | 45.0% |
| ! | TTGGTGAATTGAAAGCGTGG+TGG | - | chr5.4:4311548-4311567 | None:intergenic | 45.0% |
| !! | ATTTTTCTGGAGACGGTGCT+GGG | + | chr5.4:4314226-4314245 | MS.gene22335:CDS | 45.0% |
| !! | GATGTTGGTGACTTAAGCAC+AGG | + | chr5.4:4311885-4311904 | MS.gene22335:CDS | 45.0% |
| !! | TGGTCATGGTGTTGCAACTT+TGG | + | chr5.4:4314708-4314727 | MS.gene22335:CDS | 45.0% |
| !! | TTGTTGGGGGTACCAAATCT+AGG | - | chr5.4:4314992-4315011 | None:intergenic | 45.0% |
| AACATGAAAAGGGCCCAACC+GGG | + | chr5.4:4313213-4313232 | MS.gene22335:intron | 50.0% | |
| ACTGCAGATCAAGAGGTCAC+CGG | - | chr5.4:4313245-4313264 | None:intergenic | 50.0% | |
| AGGAGGAGGAGGAGGAAAAA+TGG | - | chr5.4:4311507-4311526 | None:intergenic | 50.0% | |
| ATGCAGATAGCCGTACTTGG+TGG | + | chr5.4:4315177-4315196 | MS.gene22335:intron | 50.0% | |
| CAGAAACTGCTAACTCTGCC+TGG | - | chr5.4:4314206-4314225 | None:intergenic | 50.0% | |
| CGCGGTAGTATTAGGTCACT+AGG | + | chr5.4:4313810-4313829 | MS.gene22335:intron | 50.0% | |
| GATCCAGCTATGACTCCCAA+GGG | - | chr5.4:4314682-4314701 | None:intergenic | 50.0% | |
| GGTCACTAGGATTGAGCTAG+TGG | + | chr5.4:4313823-4313842 | MS.gene22335:intron | 50.0% | |
| TCGACTTCAGGTGTACTTCG+GGG | + | chr5.4:4313995-4314014 | MS.gene22335:intron | 50.0% | |
| TGATCCAGCTATGACTCCCA+AGG | - | chr5.4:4314683-4314702 | None:intergenic | 50.0% | |
| TTGACGAACTCTTGCCGTTC+AGG | + | chr5.4:4313135-4313154 | MS.gene22335:CDS | 50.0% | |
| TTGAGATTGCAGAGAGGAGG+AGG | - | chr5.4:4311521-4311540 | None:intergenic | 50.0% | |
| ! | ACTAGATGAGGCATCCAGCA+GGG | - | chr5.4:4314027-4314046 | None:intergenic | 50.0% |
| !! | GATTTTTCTGGAGACGGTGC+TGG | + | chr5.4:4314225-4314244 | MS.gene22335:CDS | 50.0% |
| AGATTGCAGAGAGGAGGAGG+AGG | - | chr5.4:4311518-4311537 | None:intergenic | 55.0% | |
| AGGGTGAAGAAGCTGCTGCA+AGG | - | chr5.4:4314663-4314682 | None:intergenic | 55.0% | |
| CACAAGGGTCCATAGCTCAG+TGG | - | chr5.4:4313279-4313298 | None:intergenic | 55.0% | |
| GCAGCAGCTTCTTCACCCTT+GGG | + | chr5.4:4314664-4314683 | MS.gene22335:CDS | 55.0% | |
| GGGAGTCATAGCTGGATCAC+TGG | + | chr5.4:4314684-4314703 | MS.gene22335:CDS | 55.0% | |
| GGGTGAAGAAGCTGCTGCAA+GGG | - | chr5.4:4314662-4314681 | None:intergenic | 55.0% | |
| GTCATAGCTGGATCACTGGC+TGG | + | chr5.4:4314688-4314707 | MS.gene22335:CDS | 55.0% | |
| TCACCCTTGGGAGTCATAGC+TGG | + | chr5.4:4314676-4314695 | MS.gene22335:CDS | 55.0% | |
| TGCAGCAGCTTCTTCACCCT+TGG | + | chr5.4:4314663-4314682 | MS.gene22335:CDS | 55.0% | |
| ! | CACTAGATGAGGCATCCAGC+AGG | - | chr5.4:4314028-4314047 | None:intergenic | 55.0% |
| !! | AGAGGTCACCGGTTTGAACC+CGG | - | chr5.4:4313234-4313253 | None:intergenic | 55.0% |
| !! | TCACCGGTTTGAACCCGGTT+GGG | - | chr5.4:4313229-4313248 | None:intergenic | 55.0% |
| TTGCAGAGAGGAGGAGGAGG+AGG | - | chr5.4:4311515-4311534 | None:intergenic | 60.0% | |
| ! | GCTGGATCACTGGCTGGTCA+TGG | + | chr5.4:4314694-4314713 | MS.gene22335:CDS | 60.0% |
| !! | GTCACCGGTTTGAACCCGGT+TGG | - | chr5.4:4313230-4313249 | None:intergenic | 60.0% |
| CTTCGGGGTCTCTACCCTGC+TGG | + | chr5.4:4314010-4314029 | MS.gene22335:CDS | 65.0% | |
| GGGCCCAACCGGGTTCAAAC+CGG | + | chr5.4:4313223-4313242 | MS.gene22335:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 4311407 | 4315251 | 4311407 | ID=MS.gene22335 |
| chr5.4 | mRNA | 4311407 | 4315251 | 4311407 | ID=MS.gene22335.t1;Parent=MS.gene22335 |
| chr5.4 | exon | 4311407 | 4311586 | 4311407 | ID=MS.gene22335.t1.exon1;Parent=MS.gene22335.t1 |
| chr5.4 | CDS | 4311407 | 4311586 | 4311407 | ID=cds.MS.gene22335.t1;Parent=MS.gene22335.t1 |
| chr5.4 | exon | 4311666 | 4311917 | 4311666 | ID=MS.gene22335.t1.exon2;Parent=MS.gene22335.t1 |
| chr5.4 | CDS | 4311666 | 4311917 | 4311666 | ID=cds.MS.gene22335.t1;Parent=MS.gene22335.t1 |
| chr5.4 | exon | 4312358 | 4312411 | 4312358 | ID=MS.gene22335.t1.exon3;Parent=MS.gene22335.t1 |
| chr5.4 | CDS | 4312358 | 4312411 | 4312358 | ID=cds.MS.gene22335.t1;Parent=MS.gene22335.t1 |
| chr5.4 | exon | 4312624 | 4312685 | 4312624 | ID=MS.gene22335.t1.exon4;Parent=MS.gene22335.t1 |
| chr5.4 | CDS | 4312624 | 4312685 | 4312624 | ID=cds.MS.gene22335.t1;Parent=MS.gene22335.t1 |
| chr5.4 | exon | 4313088 | 4313156 | 4313088 | ID=MS.gene22335.t1.exon5;Parent=MS.gene22335.t1 |
| chr5.4 | CDS | 4313088 | 4313156 | 4313088 | ID=cds.MS.gene22335.t1;Parent=MS.gene22335.t1 |
| chr5.4 | exon | 4313731 | 4313782 | 4313731 | ID=MS.gene22335.t1.exon6;Parent=MS.gene22335.t1 |
| chr5.4 | CDS | 4313731 | 4313782 | 4313731 | ID=cds.MS.gene22335.t1;Parent=MS.gene22335.t1 |
| chr5.4 | exon | 4314005 | 4314079 | 4314005 | ID=MS.gene22335.t1.exon7;Parent=MS.gene22335.t1 |
| chr5.4 | CDS | 4314005 | 4314079 | 4314005 | ID=cds.MS.gene22335.t1;Parent=MS.gene22335.t1 |
| chr5.4 | exon | 4314207 | 4314336 | 4314207 | ID=MS.gene22335.t1.exon8;Parent=MS.gene22335.t1 |
| chr5.4 | CDS | 4314207 | 4314336 | 4314207 | ID=cds.MS.gene22335.t1;Parent=MS.gene22335.t1 |
| chr5.4 | exon | 4314659 | 4314729 | 4314659 | ID=MS.gene22335.t1.exon9;Parent=MS.gene22335.t1 |
| chr5.4 | CDS | 4314659 | 4314729 | 4314659 | ID=cds.MS.gene22335.t1;Parent=MS.gene22335.t1 |
| chr5.4 | exon | 4315183 | 4315251 | 4315183 | ID=MS.gene22335.t1.exon10;Parent=MS.gene22335.t1 |
| chr5.4 | CDS | 4315183 | 4315251 | 4315183 | ID=cds.MS.gene22335.t1;Parent=MS.gene22335.t1 |
| Gene Sequence |
| Protein sequence |
