Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59407.t1 | XP_003612068.1 | 82 | 362 | 63 | 2 | 1 | 360 | 11 | 372 | 2.70E-170 | 608.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59407.t1 | Q9SPV4 | 60.6 | 363 | 126 | 6 | 1 | 360 | 1 | 349 | 1.1e-119 | 431.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59407.t1 | B7FIK3 | 82.0 | 362 | 63 | 2 | 1 | 360 | 11 | 372 | 1.9e-170 | 608.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene59407 | 0.851192 | 1.04E-60 | -1.69E-46 |
| MS.gene049171 | MS.gene59407 | 0.839861 | 1.23E-57 | -1.69E-46 |
| MS.gene049173 | MS.gene59407 | 0.810882 | 9.24E-51 | -1.69E-46 |
| MS.gene049217 | MS.gene59407 | 0.851065 | 1.13E-60 | -1.69E-46 |
| MS.gene049222 | MS.gene59407 | 0.842635 | 2.29E-58 | -1.69E-46 |
| MS.gene049285 | MS.gene59407 | 0.836709 | 7.98E-57 | -1.69E-46 |
| MS.gene049320 | MS.gene59407 | 0.820274 | 7.48E-53 | -1.69E-46 |
| MS.gene049488 | MS.gene59407 | 0.809383 | 1.94E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene59407 | 0.875384 | 3.21E-68 | -1.69E-46 |
| MS.gene049633 | MS.gene59407 | 0.816585 | 5.13E-52 | -1.69E-46 |
| MS.gene049805 | MS.gene59407 | 0.860813 | 1.59E-63 | -1.69E-46 |
| MS.gene050323 | MS.gene59407 | 0.800998 | 1.11E-48 | -1.69E-46 |
| MS.gene050325 | MS.gene59407 | -0.800708 | 1.27E-48 | -1.69E-46 |
| MS.gene050327 | MS.gene59407 | -0.806827 | 6.81E-50 | -1.69E-46 |
| MS.gene050333 | MS.gene59407 | 0.80654 | 7.83E-50 | -1.69E-46 |
| MS.gene050380 | MS.gene59407 | -0.809437 | 1.89E-50 | -1.69E-46 |
| MS.gene050518 | MS.gene59407 | 0.804139 | 2.49E-49 | -1.69E-46 |
| MS.gene050593 | MS.gene59407 | 0.866727 | 2.31E-65 | -1.69E-46 |
| MS.gene050662 | MS.gene59407 | 0.82019 | 7.82E-53 | -1.69E-46 |
| MS.gene050670 | MS.gene59407 | 0.807931 | 3.97E-50 | -1.69E-46 |
| MS.gene050675 | MS.gene59407 | 0.813956 | 1.97E-51 | -1.69E-46 |
| MS.gene050686 | MS.gene59407 | 0.825726 | 4.01E-54 | -1.69E-46 |
| MS.gene050690 | MS.gene59407 | 0.803251 | 3.81E-49 | -1.69E-46 |
| MS.gene050699 | MS.gene59407 | 0.83257 | 8.77E-56 | -1.69E-46 |
| MS.gene050747 | MS.gene59407 | 0.851915 | 6.50E-61 | -1.69E-46 |
| MS.gene050772 | MS.gene59407 | 0.885914 | 5.39E-72 | -1.69E-46 |
| MS.gene05080 | MS.gene59407 | 0.804364 | 2.24E-49 | -1.69E-46 |
| MS.gene05081 | MS.gene59407 | 0.807047 | 6.12E-50 | -1.69E-46 |
| MS.gene050950 | MS.gene59407 | 0.834767 | 2.48E-56 | -1.69E-46 |
| MS.gene05105 | MS.gene59407 | 0.846839 | 1.69E-59 | -1.69E-46 |
| MS.gene051387 | MS.gene59407 | 0.865548 | 5.45E-65 | -1.69E-46 |
| MS.gene051551 | MS.gene59407 | 0.805349 | 1.39E-49 | -1.69E-46 |
| MS.gene051666 | MS.gene59407 | 0.848076 | 7.72E-60 | -1.69E-46 |
| MS.gene051692 | MS.gene59407 | 0.831884 | 1.30E-55 | -1.69E-46 |
| MS.gene051694 | MS.gene59407 | 0.824295 | 8.72E-54 | -1.69E-46 |
| MS.gene051838 | MS.gene59407 | 0.817563 | 3.09E-52 | -1.69E-46 |
| MS.gene051858 | MS.gene59407 | 0.872084 | 4.17E-67 | -1.69E-46 |
| MS.gene052271 | MS.gene59407 | 0.820925 | 5.30E-53 | -1.69E-46 |
| MS.gene052346 | MS.gene59407 | 0.814837 | 1.26E-51 | -1.69E-46 |
| MS.gene052379 | MS.gene59407 | 0.811439 | 7.00E-51 | -1.69E-46 |
| MS.gene052421 | MS.gene59407 | 0.842374 | 2.69E-58 | -1.69E-46 |
| MS.gene052481 | MS.gene59407 | 0.824344 | 8.49E-54 | -1.69E-46 |
| MS.gene052484 | MS.gene59407 | 0.817842 | 2.67E-52 | -1.69E-46 |
| MS.gene052501 | MS.gene59407 | 0.8511 | 1.11E-60 | -1.69E-46 |
| MS.gene052503 | MS.gene59407 | 0.8611 | 1.30E-63 | -1.69E-46 |
| MS.gene052505 | MS.gene59407 | 0.827372 | 1.62E-54 | -1.69E-46 |
| MS.gene052506 | MS.gene59407 | 0.812 | 5.28E-51 | -1.69E-46 |
| MS.gene052615 | MS.gene59407 | 0.863159 | 3.04E-64 | -1.69E-46 |
| MS.gene052822 | MS.gene59407 | 0.813614 | 2.34E-51 | -1.69E-46 |
| MS.gene052823 | MS.gene59407 | 0.849683 | 2.76E-60 | -1.69E-46 |
| MS.gene052825 | MS.gene59407 | 0.850889 | 1.27E-60 | -1.69E-46 |
| MS.gene052916 | MS.gene59407 | 0.818609 | 1.79E-52 | -1.69E-46 |
| MS.gene052966 | MS.gene59407 | 0.805262 | 1.45E-49 | -1.69E-46 |
| MS.gene053103 | MS.gene59407 | 0.834383 | 3.09E-56 | -1.69E-46 |
| MS.gene053104 | MS.gene59407 | 0.826387 | 2.79E-54 | -1.69E-46 |
| MS.gene053203 | MS.gene59407 | 0.818473 | 1.92E-52 | -1.69E-46 |
| MS.gene053207 | MS.gene59407 | 0.849339 | 3.44E-60 | -1.69E-46 |
| MS.gene053213 | MS.gene59407 | 0.863411 | 2.54E-64 | -1.69E-46 |
| MS.gene053286 | MS.gene59407 | 0.854021 | 1.62E-61 | -1.69E-46 |
| MS.gene053322 | MS.gene59407 | 0.82255 | 2.23E-53 | -1.69E-46 |
| MS.gene053436 | MS.gene59407 | 0.847481 | 1.13E-59 | -1.69E-46 |
| MS.gene053449 | MS.gene59407 | 0.841601 | 4.30E-58 | -1.69E-46 |
| MS.gene053574 | MS.gene59407 | 0.855299 | 6.92E-62 | -1.69E-46 |
| MS.gene053626 | MS.gene59407 | 0.818774 | 1.64E-52 | -1.69E-46 |
| MS.gene053632 | MS.gene59407 | 0.847004 | 1.52E-59 | -1.69E-46 |
| MS.gene053813 | MS.gene59407 | 0.804463 | 2.13E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene59407 | 0.825204 | 5.33E-54 | -1.69E-46 |
| MS.gene053912 | MS.gene59407 | 0.8182 | 2.22E-52 | -1.69E-46 |
| MS.gene053916 | MS.gene59407 | 0.814077 | 1.85E-51 | -1.69E-46 |
| MS.gene054003 | MS.gene59407 | 0.811656 | 6.28E-51 | -1.69E-46 |
| MS.gene054408 | MS.gene59407 | 0.802543 | 5.34E-49 | -1.69E-46 |
| MS.gene054595 | MS.gene59407 | 0.840881 | 6.66E-58 | -1.69E-46 |
| MS.gene054600 | MS.gene59407 | 0.831447 | 1.66E-55 | -1.69E-46 |
| MS.gene054642 | MS.gene59407 | 0.831453 | 1.65E-55 | -1.69E-46 |
| MS.gene054927 | MS.gene59407 | 0.833623 | 4.79E-56 | -1.69E-46 |
| MS.gene054954 | MS.gene59407 | 0.807024 | 6.19E-50 | -1.69E-46 |
| MS.gene05505 | MS.gene59407 | 0.855476 | 6.15E-62 | -1.69E-46 |
| MS.gene055206 | MS.gene59407 | 0.868552 | 6.00E-66 | -1.69E-46 |
| MS.gene055212 | MS.gene59407 | 0.80118 | 1.02E-48 | -1.69E-46 |
| MS.gene055289 | MS.gene59407 | 0.825362 | 4.89E-54 | -1.69E-46 |
| MS.gene055362 | MS.gene59407 | 0.837289 | 5.68E-57 | -1.69E-46 |
| MS.gene055486 | MS.gene59407 | 0.800753 | 1.24E-48 | -1.69E-46 |
| MS.gene055502 | MS.gene59407 | 0.841941 | 3.50E-58 | -1.69E-46 |
| MS.gene055577 | MS.gene59407 | 0.817504 | 3.19E-52 | -1.69E-46 |
| MS.gene055647 | MS.gene59407 | 0.842454 | 2.56E-58 | -1.69E-46 |
| MS.gene055722 | MS.gene59407 | 0.871841 | 5.03E-67 | -1.69E-46 |
| MS.gene055909 | MS.gene59407 | 0.810797 | 9.64E-51 | -1.69E-46 |
| MS.gene055911 | MS.gene59407 | 0.806143 | 9.49E-50 | -1.69E-46 |
| MS.gene05592 | MS.gene59407 | 0.834295 | 3.26E-56 | -1.69E-46 |
| MS.gene055941 | MS.gene59407 | 0.842018 | 3.34E-58 | -1.69E-46 |
| MS.gene056083 | MS.gene59407 | 0.812192 | 4.80E-51 | -1.69E-46 |
| MS.gene056166 | MS.gene59407 | 0.814987 | 1.16E-51 | -1.69E-46 |
| MS.gene056374 | MS.gene59407 | 0.826547 | 2.55E-54 | -1.69E-46 |
| MS.gene056448 | MS.gene59407 | 0.825406 | 4.77E-54 | -1.69E-46 |
| MS.gene056487 | MS.gene59407 | 0.82569 | 4.08E-54 | -1.69E-46 |
| MS.gene056504 | MS.gene59407 | 0.810995 | 8.74E-51 | -1.69E-46 |
| MS.gene056510 | MS.gene59407 | 0.8008 | 1.22E-48 | -1.69E-46 |
| MS.gene056511 | MS.gene59407 | 0.85487 | 9.23E-62 | -1.69E-46 |
| MS.gene056549 | MS.gene59407 | 0.815429 | 9.29E-52 | -1.69E-46 |
| MS.gene056610 | MS.gene59407 | 0.800014 | 1.76E-48 | -1.69E-46 |
| MS.gene056657 | MS.gene59407 | 0.840493 | 8.41E-58 | -1.69E-46 |
| MS.gene056942 | MS.gene59407 | 0.801769 | 7.70E-49 | -1.69E-46 |
| MS.gene056946 | MS.gene59407 | 0.804755 | 1.86E-49 | -1.69E-46 |
| MS.gene057076 | MS.gene59407 | 0.845775 | 3.29E-59 | -1.69E-46 |
| MS.gene057146 | MS.gene59407 | 0.847644 | 1.01E-59 | -1.69E-46 |
| MS.gene057331 | MS.gene59407 | 0.834771 | 2.47E-56 | -1.69E-46 |
| MS.gene057416 | MS.gene59407 | 0.888106 | 7.92E-73 | -1.69E-46 |
| MS.gene057658 | MS.gene59407 | 0.800125 | 1.67E-48 | -1.69E-46 |
| MS.gene057734 | MS.gene59407 | 0.817685 | 2.90E-52 | -1.69E-46 |
| MS.gene057749 | MS.gene59407 | 0.806874 | 6.65E-50 | -1.69E-46 |
| MS.gene057823 | MS.gene59407 | 0.819798 | 9.61E-53 | -1.69E-46 |
| MS.gene057831 | MS.gene59407 | 0.806312 | 8.75E-50 | -1.69E-46 |
| MS.gene057856 | MS.gene59407 | 0.814673 | 1.37E-51 | -1.69E-46 |
| MS.gene058019 | MS.gene59407 | 0.854445 | 1.23E-61 | -1.69E-46 |
| MS.gene058338 | MS.gene59407 | 0.858938 | 5.84E-63 | -1.69E-46 |
| MS.gene058376 | MS.gene59407 | 0.822931 | 1.82E-53 | -1.69E-46 |
| MS.gene05837 | MS.gene59407 | 0.813185 | 2.91E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene59407 | 0.862846 | 3.79E-64 | -1.69E-46 |
| MS.gene058444 | MS.gene59407 | 0.804151 | 2.48E-49 | -1.69E-46 |
| MS.gene058544 | MS.gene59407 | 0.832863 | 7.41E-56 | -1.69E-46 |
| MS.gene058773 | MS.gene59407 | 0.814509 | 1.49E-51 | -1.69E-46 |
| MS.gene058838 | MS.gene59407 | 0.836114 | 1.13E-56 | -1.69E-46 |
| MS.gene05883 | MS.gene59407 | 0.832154 | 1.11E-55 | -1.69E-46 |
| MS.gene059022 | MS.gene59407 | 0.812495 | 4.12E-51 | -1.69E-46 |
| MS.gene059023 | MS.gene59407 | 0.822374 | 2.45E-53 | -1.69E-46 |
| MS.gene059029 | MS.gene59407 | 0.804688 | 1.92E-49 | -1.69E-46 |
| MS.gene05913 | MS.gene59407 | 0.82417 | 9.33E-54 | -1.69E-46 |
| MS.gene05934 | MS.gene59407 | 0.860232 | 2.38E-63 | -1.69E-46 |
| MS.gene059455 | MS.gene59407 | 0.835322 | 1.80E-56 | -1.69E-46 |
| MS.gene059536 | MS.gene59407 | 0.860003 | 2.80E-63 | -1.69E-46 |
| MS.gene059677 | MS.gene59407 | 0.82375 | 1.17E-53 | -1.69E-46 |
| MS.gene059688 | MS.gene59407 | 0.805742 | 1.15E-49 | -1.69E-46 |
| MS.gene059711 | MS.gene59407 | 0.825114 | 5.59E-54 | -1.69E-46 |
| MS.gene059718 | MS.gene59407 | 0.855411 | 6.42E-62 | -1.69E-46 |
| MS.gene059756 | MS.gene59407 | 0.840731 | 7.29E-58 | -1.69E-46 |
| MS.gene059801 | MS.gene59407 | 0.826823 | 2.20E-54 | -1.69E-46 |
| MS.gene059902 | MS.gene59407 | 0.865013 | 8.03E-65 | -1.69E-46 |
| MS.gene059960 | MS.gene59407 | 0.812185 | 4.82E-51 | -1.69E-46 |
| MS.gene060403 | MS.gene59407 | 0.835355 | 1.76E-56 | -1.69E-46 |
| MS.gene060482 | MS.gene59407 | 0.858918 | 5.92E-63 | -1.69E-46 |
| MS.gene060727 | MS.gene59407 | 0.802816 | 4.69E-49 | -1.69E-46 |
| MS.gene06077 | MS.gene59407 | 0.811744 | 6.01E-51 | -1.69E-46 |
| MS.gene060804 | MS.gene59407 | 0.851135 | 1.08E-60 | -1.69E-46 |
| MS.gene060818 | MS.gene59407 | 0.826713 | 2.33E-54 | -1.69E-46 |
| MS.gene060835 | MS.gene59407 | 0.845093 | 5.03E-59 | -1.69E-46 |
| MS.gene060837 | MS.gene59407 | 0.852598 | 4.16E-61 | -1.69E-46 |
| MS.gene06092 | MS.gene59407 | 0.840118 | 1.05E-57 | -1.69E-46 |
| MS.gene061041 | MS.gene59407 | 0.833926 | 4.03E-56 | -1.69E-46 |
| MS.gene061134 | MS.gene59407 | 0.821192 | 4.60E-53 | -1.69E-46 |
| MS.gene061150 | MS.gene59407 | 0.818396 | 2.00E-52 | -1.69E-46 |
| MS.gene061200 | MS.gene59407 | 0.840162 | 1.03E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59407.t1 | MTR_5g020940 | 82.044 | 362 | 63 | 2 | 1 | 360 | 11 | 372 | 0.0 | 621 |
| MS.gene59407.t1 | MTR_8g077040 | 71.191 | 361 | 103 | 1 | 1 | 360 | 1 | 361 | 0.0 | 550 |
| MS.gene59407.t1 | MTR_3g467270 | 67.680 | 362 | 115 | 2 | 1 | 361 | 1 | 361 | 0.0 | 517 |
| MS.gene59407.t1 | MTR_4g018820 | 66.298 | 362 | 110 | 2 | 1 | 361 | 1 | 351 | 1.35e-179 | 504 |
| MS.gene59407.t1 | MTR_8g076900 | 64.266 | 361 | 120 | 2 | 1 | 360 | 1 | 353 | 3.36e-174 | 490 |
| MS.gene59407.t1 | MTR_6g056070 | 60.606 | 363 | 127 | 3 | 1 | 361 | 1 | 349 | 2.17e-157 | 447 |
| MS.gene59407.t1 | MTR_8g020690 | 59.392 | 362 | 134 | 3 | 1 | 360 | 1 | 351 | 4.89e-154 | 439 |
| MS.gene59407.t1 | MTR_8g020700 | 60.111 | 361 | 128 | 5 | 1 | 359 | 1 | 347 | 1.87e-152 | 435 |
| MS.gene59407.t1 | MTR_8g076900 | 68.163 | 245 | 77 | 1 | 1 | 244 | 1 | 245 | 3.58e-124 | 359 |
| MS.gene59407.t1 | MTR_8g020700 | 61.569 | 255 | 96 | 2 | 1 | 253 | 1 | 255 | 1.01e-112 | 330 |
| MS.gene59407.t1 | MTR_3g117060 | 44.837 | 368 | 189 | 4 | 1 | 361 | 1 | 361 | 1.20e-108 | 324 |
| MS.gene59407.t1 | MTR_3g467560 | 45.777 | 367 | 181 | 6 | 1 | 360 | 25 | 380 | 3.68e-106 | 318 |
| MS.gene59407.t1 | MTR_1g022455 | 46.649 | 388 | 179 | 8 | 1 | 369 | 1 | 379 | 6.40e-104 | 312 |
| MS.gene59407.t1 | MTR_1g022465 | 46.512 | 387 | 180 | 10 | 1 | 369 | 1 | 378 | 1.84e-103 | 311 |
| MS.gene59407.t1 | MTR_5g046110 | 41.304 | 368 | 195 | 4 | 1 | 361 | 61 | 414 | 1.46e-96 | 295 |
| MS.gene59407.t1 | MTR_7g084620 | 42.582 | 364 | 187 | 7 | 6 | 360 | 6 | 356 | 6.52e-94 | 286 |
| MS.gene59407.t1 | MTR_7g084350 | 39.394 | 363 | 204 | 5 | 5 | 360 | 3 | 356 | 1.09e-88 | 273 |
| MS.gene59407.t1 | MTR_8g077030 | 56.164 | 219 | 73 | 3 | 1 | 218 | 1 | 197 | 4.17e-77 | 248 |
| MS.gene59407.t1 | MTR_7g084330 | 38.730 | 315 | 157 | 9 | 53 | 360 | 39 | 324 | 2.64e-61 | 201 |
| MS.gene59407.t1 | MTR_3g054330 | 33.425 | 362 | 210 | 8 | 1 | 345 | 10 | 357 | 3.35e-54 | 184 |
| MS.gene59407.t1 | MTR_5g093900 | 32.461 | 382 | 216 | 11 | 5 | 361 | 17 | 381 | 1.06e-49 | 172 |
| MS.gene59407.t1 | MTR_3g052700 | 32.172 | 373 | 219 | 9 | 5 | 357 | 17 | 375 | 1.24e-48 | 169 |
| MS.gene59407.t1 | MTR_1g108660 | 34.628 | 309 | 156 | 8 | 49 | 345 | 38 | 312 | 1.97e-47 | 165 |
| MS.gene59407.t1 | MTR_6g015620 | 37.069 | 116 | 70 | 1 | 246 | 361 | 18 | 130 | 4.15e-16 | 75.1 |
| MS.gene59407.t1 | MTR_7g084340 | 34.746 | 118 | 69 | 3 | 236 | 351 | 2 | 113 | 4.94e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59407.t1 | AT1G19640 | 46.631 | 371 | 172 | 7 | 1 | 348 | 1 | 368 | 6.18e-100 | 302 |
| MS.gene59407.t1 | AT3G11480 | 42.609 | 345 | 177 | 5 | 5 | 344 | 27 | 355 | 1.66e-96 | 293 |
| MS.gene59407.t1 | AT4G36470 | 42.740 | 365 | 188 | 5 | 7 | 361 | 10 | 363 | 5.10e-95 | 289 |
| MS.gene59407.t1 | AT5G66430 | 39.769 | 347 | 197 | 4 | 9 | 352 | 1 | 338 | 4.05e-92 | 281 |
| MS.gene59407.t1 | AT5G38020 | 42.254 | 355 | 187 | 4 | 6 | 350 | 3 | 349 | 9.98e-92 | 281 |
| MS.gene59407.t1 | AT5G04380 | 40.688 | 349 | 189 | 5 | 9 | 352 | 38 | 373 | 1.39e-91 | 281 |
| MS.gene59407.t1 | AT5G04370 | 40.922 | 347 | 189 | 6 | 9 | 352 | 41 | 374 | 4.58e-90 | 277 |
| MS.gene59407.t1 | AT5G04370 | 40.922 | 347 | 189 | 6 | 9 | 352 | 60 | 393 | 1.13e-89 | 277 |
| MS.gene59407.t1 | AT5G04370 | 40.922 | 347 | 189 | 6 | 9 | 352 | 46 | 379 | 2.08e-89 | 276 |
| MS.gene59407.t1 | AT3G21950 | 40.634 | 347 | 192 | 4 | 6 | 344 | 3 | 343 | 5.64e-89 | 273 |
| MS.gene59407.t1 | AT5G04380 | 40.401 | 349 | 183 | 6 | 9 | 352 | 34 | 362 | 1.66e-87 | 270 |
| MS.gene59407.t1 | AT2G14060 | 41.429 | 350 | 195 | 5 | 6 | 352 | 11 | 353 | 1.03e-86 | 268 |
| MS.gene59407.t1 | AT5G04380 | 40.391 | 307 | 171 | 3 | 47 | 352 | 7 | 302 | 7.14e-84 | 259 |
| MS.gene59407.t1 | AT5G38020 | 42.949 | 312 | 162 | 3 | 47 | 350 | 7 | 310 | 2.19e-83 | 258 |
| MS.gene59407.t1 | AT3G21950 | 36.939 | 379 | 193 | 5 | 6 | 344 | 3 | 375 | 3.03e-82 | 257 |
| MS.gene59407.t1 | AT2G14060 | 43.421 | 228 | 124 | 2 | 6 | 231 | 11 | 235 | 3.91e-64 | 206 |
| MS.gene59407.t1 | AT1G68040 | 33.333 | 366 | 204 | 7 | 7 | 358 | 11 | 350 | 5.63e-62 | 204 |
| MS.gene59407.t1 | AT5G55250 | 33.989 | 356 | 211 | 7 | 1 | 342 | 13 | 358 | 5.34e-56 | 189 |
| MS.gene59407.t1 | AT1G15125 | 33.239 | 355 | 192 | 10 | 9 | 348 | 1 | 325 | 3.17e-52 | 178 |
| MS.gene59407.t1 | AT5G38100 | 34.153 | 366 | 193 | 10 | 9 | 358 | 10 | 343 | 1.21e-51 | 177 |
| MS.gene59407.t1 | AT5G55250 | 34.641 | 306 | 179 | 6 | 48 | 342 | 25 | 320 | 2.94e-49 | 170 |
| MS.gene59407.t1 | AT5G38100 | 35.220 | 318 | 162 | 8 | 53 | 358 | 35 | 320 | 3.50e-49 | 169 |
| MS.gene59407.t1 | AT5G37970 | 32.708 | 373 | 200 | 11 | 5 | 358 | 6 | 346 | 2.42e-48 | 168 |
| MS.gene59407.t1 | AT5G37990 | 32.320 | 362 | 198 | 9 | 5 | 347 | 6 | 339 | 6.46e-47 | 164 |
| MS.gene59407.t1 | AT5G56300 | 31.111 | 360 | 208 | 11 | 5 | 343 | 20 | 360 | 1.00e-45 | 162 |
| MS.gene59407.t1 | AT4G26420 | 33.148 | 359 | 205 | 11 | 5 | 344 | 9 | 351 | 1.93e-45 | 160 |
| MS.gene59407.t1 | AT5G38780 | 31.063 | 367 | 197 | 11 | 5 | 348 | 6 | 339 | 7.18e-45 | 159 |
| MS.gene59407.t1 | AT5G38780 | 31.613 | 310 | 169 | 8 | 53 | 348 | 10 | 290 | 3.03e-42 | 150 |
| MS.gene59407.t1 | AT3G44840 | 29.825 | 342 | 200 | 9 | 9 | 340 | 7 | 318 | 6.95e-39 | 142 |
| MS.gene59407.t1 | AT3G44860 | 33.922 | 283 | 167 | 6 | 9 | 283 | 7 | 277 | 3.87e-38 | 140 |
| MS.gene59407.t1 | AT3G44870 | 32.624 | 282 | 169 | 6 | 9 | 283 | 7 | 274 | 4.51e-37 | 138 |
| MS.gene59407.t1 | AT4G26420 | 37.004 | 227 | 124 | 7 | 5 | 220 | 9 | 227 | 6.28e-35 | 130 |
| MS.gene59407.t1 | AT1G66720 | 28.261 | 368 | 216 | 13 | 9 | 363 | 9 | 341 | 1.16e-34 | 131 |
| MS.gene59407.t1 | AT5G38100 | 38.532 | 218 | 111 | 6 | 9 | 213 | 10 | 217 | 1.84e-34 | 128 |
| MS.gene59407.t1 | AT5G38100 | 38.532 | 218 | 111 | 6 | 9 | 213 | 10 | 217 | 2.08e-34 | 128 |
| MS.gene59407.t1 | AT1G15125 | 33.202 | 253 | 143 | 7 | 9 | 248 | 1 | 240 | 2.21e-34 | 128 |
| MS.gene59407.t1 | AT4G26420 | 37.220 | 223 | 121 | 7 | 9 | 220 | 1 | 215 | 8.68e-34 | 127 |
| MS.gene59407.t1 | AT1G66700 | 27.635 | 351 | 199 | 9 | 9 | 340 | 9 | 323 | 2.32e-33 | 128 |
| MS.gene59407.t1 | AT1G66690 | 27.855 | 359 | 204 | 9 | 1 | 340 | 1 | 323 | 9.52e-30 | 118 |
| MS.gene59407.t1 | AT1G66700 | 32.558 | 215 | 123 | 5 | 9 | 213 | 9 | 211 | 3.22e-27 | 109 |
Find 80 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGACTTGGGTTGCTCTTC+TGG | 0.124180 | 5.4:+12800245 | MS.gene59407:CDS |
| GCAAAGAGTGCTGCTATATT+TGG | 0.180266 | 5.4:+12803590 | MS.gene59407:CDS |
| ATAAGCTTTGAGCACATTTA+TGG | 0.195508 | 5.4:-12803452 | None:intergenic |
| TTCATGAACACTTGGTATTC+TGG | 0.218070 | 5.4:-12800344 | None:intergenic |
| TGCAAATAACTCCTTACTTC+AGG | 0.313555 | 5.4:+12800010 | MS.gene59407:CDS |
| TTTAGCTAGTCGAATGTCTA+AGG | 0.315844 | 5.4:+12805164 | MS.gene59407:CDS |
| CTCATCAGAAGTAGAATTAG+AGG | 0.323644 | 5.4:+12804915 | MS.gene59407:CDS |
| TCTGCAATTCCTAGTCTTCT+TGG | 0.325779 | 5.4:-12800227 | None:intergenic |
| ATTGGAATGCTTACGATGAT+TGG | 0.327277 | 5.4:+12804989 | MS.gene59407:CDS |
| TTATTGTTCTCTACATCATT+AGG | 0.334453 | 5.4:-12803400 | None:intergenic |
| AGCTTCCGATCCACTTCTTC+TGG | 0.355914 | 5.4:-12807197 | None:intergenic |
| TAATGATGTAGAGAACAATA+AGG | 0.377738 | 5.4:+12803402 | MS.gene59407:CDS |
| AGTTCTGCAGAGGTTCCTTA+TGG | 0.380431 | 5.4:-12800201 | None:intergenic |
| GATATCACAAATAAAGTGTT+TGG | 0.380662 | 5.4:-12800269 | None:intergenic |
| TGCTCTTAACGACATGGTCT+TGG | 0.380911 | 5.4:+12803627 | MS.gene59407:CDS |
| TTCTGTCCCGTAATTCGAAT+TGG | 0.382386 | 5.4:-12807263 | None:intergenic |
| TTGCCTGAGTCGCGCATTGA+TGG | 0.383305 | 5.4:+12805036 | MS.gene59407:CDS |
| CAAAGAGTGCTGCTATATTT+GGG | 0.393058 | 5.4:+12803591 | MS.gene59407:CDS |
| TAAGCTTTGAGCACATTTAT+GGG | 0.393290 | 5.4:-12803451 | None:intergenic |
| TCGTAATCCAATTCGAATTA+CGG | 0.406558 | 5.4:+12807256 | MS.gene59407:CDS |
| CTGCAATTCCTAGTCTTCTT+GGG | 0.410295 | 5.4:-12800226 | None:intergenic |
| GGCTGTAGTTGAACCTTTGT+TGG | 0.419511 | 5.4:+12805086 | MS.gene59407:CDS |
| CCTTTGTTGGTCAGTCACTT+TGG | 0.420436 | 5.4:+12805099 | MS.gene59407:CDS |
| GTGTTCATGAATGATCTTCC+TGG | 0.435426 | 5.4:+12800356 | MS.gene59407:CDS |
| CGTAATCCAATTCGAATTAC+GGG | 0.445375 | 5.4:+12807257 | MS.gene59407:CDS |
| ACCCCTTTCAACAAGCTCTT+CGG | 0.454641 | 5.4:-12803521 | None:intergenic |
| GATTGGAATGATATTGATGT+TGG | 0.456232 | 5.4:+12805006 | MS.gene59407:CDS |
| GGTCCTTTAGGGAATCATAA+TGG | 0.458040 | 5.4:+12804849 | MS.gene59407:intron |
| AAAGGTCATTTCTTTGACAA+AGG | 0.464096 | 5.4:+12800163 | MS.gene59407:CDS |
| TGCCGAAGAGCTTGTTGAAA+GGG | 0.469328 | 5.4:+12803519 | MS.gene59407:CDS |
| AATCATAATGGAGGAGCAAA+TGG | 0.479030 | 5.4:+12804861 | MS.gene59407:CDS |
| AATGATGTAGAGAACAATAA+GGG | 0.498989 | 5.4:+12803403 | MS.gene59407:CDS |
| ATTGAAGGCTGTACGAGGAA+TGG | 0.514974 | 5.4:-12800529 | None:intergenic |
| TCTTAACGACATGGTCTTGG+AGG | 0.519014 | 5.4:+12803630 | MS.gene59407:CDS |
| GCTCCATCAATGCGCGACTC+AGG | 0.520496 | 5.4:-12805039 | None:intergenic |
| AGAGAAACTAAATGATGAAG+TGG | 0.525919 | 5.4:+12800421 | MS.gene59407:CDS |
| ACATGAGAGAGGAAGCCATA+AGG | 0.526587 | 5.4:+12800186 | MS.gene59407:CDS |
| AAGCTGAGTCGCAACGGCAA+CGG | 0.526846 | 5.4:+12807215 | MS.gene59407:CDS |
| AAGACTAGGAATTGCAGACT+TGG | 0.526890 | 5.4:+12800232 | MS.gene59407:CDS |
| ATTCCTCGTACAGCCTTCAA+TGG | 0.532672 | 5.4:+12800531 | MS.gene59407:CDS |
| CAATAAGGGTAATATTTACA+TGG | 0.533461 | 5.4:+12803417 | MS.gene59407:CDS |
| AAGAGAGACAAGAATGAATG+TGG | 0.535408 | 5.4:+12799944 | None:intergenic |
| GATGAAGTGGAAGGTGGGAT+TGG | 0.536438 | 5.4:+12800434 | MS.gene59407:CDS |
| TGCTATTGCTCTTAACGACA+TGG | 0.540305 | 5.4:+12803621 | MS.gene59407:CDS |
| TAGAAGTAACAGAAATACAT+TGG | 0.541057 | 5.4:+12804971 | MS.gene59407:CDS |
| AGAACTTTCCCAAGAAGACT+AGG | 0.542573 | 5.4:+12800218 | MS.gene59407:CDS |
| TAAATGATGAAGTGGAAGGT+GGG | 0.543127 | 5.4:+12800429 | MS.gene59407:CDS |
| CTTGGTATTCTGGAGACTCA+TGG | 0.549163 | 5.4:-12800334 | None:intergenic |
| ACAGTTCGAACCAGAAGAAG+TGG | 0.559412 | 5.4:+12807187 | MS.gene59407:intron |
| CTAAATGATGAAGTGGAAGG+TGG | 0.560920 | 5.4:+12800428 | MS.gene59407:CDS |
| GTGCCGAAGAGCTTGTTGAA+AGG | 0.564001 | 5.4:+12803518 | MS.gene59407:CDS |
| ATGCACATGAACGGAGGCAC+GGG | 0.564111 | 5.4:+12799975 | MS.gene59407:CDS |
| TTCTTGGGAAAGTTCTGCAG+AGG | 0.566936 | 5.4:-12800211 | None:intergenic |
| TGGAGAAGCTATCATTGAAG+AGG | 0.570876 | 5.4:+12805119 | MS.gene59407:CDS |
| AATTCTACTTCTGATGAGGA+TGG | 0.577914 | 5.4:-12804910 | None:intergenic |
| GTACCTGTGATAGCCATTGA+AGG | 0.585405 | 5.4:-12800544 | None:intergenic |
| CTCTAATTCTACTTCTGATG+AGG | 0.589922 | 5.4:-12804914 | None:intergenic |
| CCAAAGTGACTGACCAACAA+AGG | 0.591313 | 5.4:-12805099 | None:intergenic |
| GATGAGGATGGTGTGTATTG+AGG | 0.592884 | 5.4:-12804898 | None:intergenic |
| AGACTAGGAATTGCAGACTT+GGG | 0.595161 | 5.4:+12800233 | MS.gene59407:CDS |
| ATCTGAAGTTATCAAATCAG+TGG | 0.595190 | 5.4:+12800289 | MS.gene59407:CDS |
| AAGCTTTGAGCACATTTATG+GGG | 0.600673 | 5.4:-12803450 | None:intergenic |
| GGCACCCCATTGATAAAACA+TGG | 0.602861 | 5.4:-12800458 | None:intergenic |
| AAACTAAATGATGAAGTGGA+AGG | 0.604990 | 5.4:+12800425 | MS.gene59407:CDS |
| CAGCCTTCAATGGCTATCAC+AGG | 0.610040 | 5.4:+12800541 | MS.gene59407:CDS |
| AGAGAGACAAGAATGAATGT+GGG | 0.611967 | 5.4:+12799945 | None:intergenic |
| GAAGATCATTCATGAACACT+TGG | 0.615429 | 5.4:-12800352 | None:intergenic |
| GATCGGAAGCTGAGTCGCAA+CGG | 0.618206 | 5.4:+12807209 | MS.gene59407:CDS |
| TTTGACAAAGGACATGAGAG+AGG | 0.618811 | 5.4:+12800175 | MS.gene59407:CDS |
| AATGCACATGAACGGAGGCA+CGG | 0.619155 | 5.4:+12799974 | MS.gene59407:CDS |
| GCCGAAGAGCTTGTTGAAAG+GGG | 0.619904 | 5.4:+12803520 | MS.gene59407:CDS |
| TCGAACCAGAAGAAGTGGAT+CGG | 0.620778 | 5.4:+12807192 | MS.gene59407:CDS |
| ATGTTATTGAAATCATTACC+AGG | 0.628312 | 5.4:-12800374 | None:intergenic |
| ACAATGTTGCAAAATGCATG+AGG | 0.631179 | 5.4:+12805064 | MS.gene59407:CDS |
| GGACAAGTAATGCACATGAA+CGG | 0.642407 | 5.4:+12799966 | MS.gene59407:CDS |
| GAAGAGCTTGTTGAAAGGGG+TGG | 0.671067 | 5.4:+12803523 | MS.gene59407:CDS |
| CCTTTAGGGAATCATAATGG+AGG | 0.682295 | 5.4:+12804852 | MS.gene59407:intron |
| TAGCCATTGAAGGCTGTACG+AGG | 0.684251 | 5.4:-12800534 | None:intergenic |
| CAATGTTGCAAAATGCATGA+GGG | 0.686179 | 5.4:+12805065 | MS.gene59407:CDS |
| CAAGTAATGCACATGAACGG+AGG | 0.707571 | 5.4:+12799969 | MS.gene59407:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 12799957 | 12807301 | 12799957 | ID=MS.gene59407 |
| chr5.4 | mRNA | 12799957 | 12807301 | 12799957 | ID=MS.gene59407.t1;Parent=MS.gene59407 |
| chr5.4 | exon | 12799957 | 12800031 | 12799957 | ID=MS.gene59407.t1.exon1;Parent=MS.gene59407.t1 |
| chr5.4 | CDS | 12799957 | 12800031 | 12799957 | ID=cds.MS.gene59407.t1;Parent=MS.gene59407.t1 |
| chr5.4 | exon | 12800161 | 12800562 | 12800161 | ID=MS.gene59407.t1.exon2;Parent=MS.gene59407.t1 |
| chr5.4 | CDS | 12800161 | 12800562 | 12800161 | ID=cds.MS.gene59407.t1;Parent=MS.gene59407.t1 |
| chr5.4 | exon | 12803397 | 12803651 | 12803397 | ID=MS.gene59407.t1.exon3;Parent=MS.gene59407.t1 |
| chr5.4 | CDS | 12803397 | 12803651 | 12803397 | ID=cds.MS.gene59407.t1;Parent=MS.gene59407.t1 |
| chr5.4 | exon | 12804859 | 12805206 | 12804859 | ID=MS.gene59407.t1.exon4;Parent=MS.gene59407.t1 |
| chr5.4 | CDS | 12804859 | 12805206 | 12804859 | ID=cds.MS.gene59407.t1;Parent=MS.gene59407.t1 |
| chr5.4 | exon | 12807191 | 12807301 | 12807191 | ID=MS.gene59407.t1.exon5;Parent=MS.gene59407.t1 |
| chr5.4 | CDS | 12807191 | 12807301 | 12807191 | ID=cds.MS.gene59407.t1;Parent=MS.gene59407.t1 |
| Gene Sequence |
| Protein sequence |
