AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene62866


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62866.t1 MTR_4g101750 75.079 317 78 1 2 317 456 772 3.73e-169 489
MS.gene62866.t1 MTR_4g101750 74.194 279 70 2 2 278 456 734 5.04e-142 419
MS.gene62866.t1 MTR_4g101740 73.063 271 37 2 1 271 1 235 5.63e-132 375
MS.gene62866.t1 MTR_7g044770 36.562 320 198 4 3 319 250 567 5.99e-67 219
MS.gene62866.t1 MTR_7g044770 36.562 320 198 4 3 319 427 744 9.19e-66 220
MS.gene62866.t1 MTR_2g020660 34.891 321 184 6 3 319 421 720 4.88e-56 193
MS.gene62866.t1 MTR_1g048000 26.593 361 207 13 2 308 450 806 4.46e-22 97.4
MS.gene62866.t1 MTR_2g069050 26.316 361 208 11 2 308 450 806 6.60e-22 96.7
MS.gene62866.t1 MTR_2g069310 26.316 361 208 11 2 308 450 806 7.11e-22 96.7
MS.gene62866.t1 MTR_2g069320 27.389 314 174 8 44 307 496 805 3.64e-18 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62866.t1 AT1G62750 72.555 317 86 1 2 317 460 776 1.16e-163 475
MS.gene62866.t1 AT1G45332 38.438 320 192 4 3 319 250 567 1.30e-70 229
MS.gene62866.t1 AT1G45332 38.438 320 192 4 3 319 430 747 2.99e-69 229
MS.gene62866.t1 AT2G45030 38.438 320 192 4 3 319 430 747 3.18e-69 229
MS.gene62866.t1 AT1G56070 26.316 361 208 11 2 308 450 806 1.32e-21 95.9
MS.gene62866.t1 AT1G56070 26.316 361 208 11 2 308 450 806 1.32e-21 95.9
MS.gene62866.t1 AT1G56070 26.316 361 208 11 2 308 450 806 1.32e-21 95.9
MS.gene62866.t1 AT3G12915 26.984 315 175 9 44 308 442 751 2.59e-18 86.3

Find 83 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTCTCAAAAGAGAATTTA+AGG 0.150412 8.1:+21956912 MS.gene62866:CDS
CTCCATGTCAGCTTTAGTTT+TGG 0.200742 8.1:-21956767 None:intergenic
ACAATTTCAACTTTCATTAT+AGG 0.216886 8.1:-21957711 None:intergenic
TGGTGTTCTAGCCGGCTTTC+CGG 0.222511 8.1:+21957557 MS.gene62866:CDS
GTTACTCCTGAAGAACATTT+AGG 0.259112 8.1:+21957732 MS.gene62866:CDS
ACATCTCCTAAATGTTCTTC+AGG 0.320044 8.1:-21957738 None:intergenic
CTTCCAGAAGAATTCATTAC+TGG 0.320246 8.1:+21957501 MS.gene62866:CDS
TCAATTGCAATCTTAATAAC+AGG 0.329367 8.1:-21956742 None:intergenic
GAACATTTAGGAGATGTAAT+TGG 0.332221 8.1:+21957744 MS.gene62866:CDS
TGCTTTCCCTATAGTTTACT+TGG 0.338998 8.1:-21957338 None:intergenic
ATGGATATTGTTACTCTTGT+TGG 0.342618 8.1:+21956640 MS.gene62866:CDS
ACCCCAGTAATGAATTCTTC+TGG 0.342666 8.1:-21957504 None:intergenic
GCAATCTTAATAACAGGAAC+AGG 0.342806 8.1:-21956736 None:intergenic
TCGTCCGGTCCTCTTTATCT+TGG 0.357888 8.1:-21956846 None:intergenic
AAGCTTCTCTTGCTGCCAAC+TGG 0.389694 8.1:-21957647 None:intergenic
CGTCCGGTCCTCTTTATCTT+GGG 0.401352 8.1:-21956845 None:intergenic
TCAAATTTGTATCCACTACT+TGG 0.404077 8.1:-21957456 None:intergenic
CTAGCCGGCTTTCCGGTTGT+TGG 0.421178 8.1:+21957564 MS.gene62866:CDS
AGGTTCAAGCATTAACGGTT+TGG 0.428422 8.1:-21957691 None:intergenic
GTATCCACTACTTGGGTCCA+TGG 0.429904 8.1:-21957448 None:intergenic
GTCCATGGGTTCAAAATGTA+TGG 0.430865 8.1:-21957433 None:intergenic
ATTATAGGTTCAAGCATTAA+CGG 0.444891 8.1:-21957696 None:intergenic
ATCAAGCACGAATGGACCCT+TGG 0.445699 8.1:-21956701 None:intergenic
TAAAGCTGACATGGAGAAGA+TGG 0.456923 8.1:+21956774 MS.gene62866:CDS
TACTGAAACATCTCAGCAAT+AGG 0.458689 8.1:-21958081 None:intergenic
TCTTGGGATAAGCGGAAAGA+AGG 0.462771 8.1:-21956829 None:intergenic
TCAAGCACGAATGGACCCTT+GGG 0.462799 8.1:-21956700 None:intergenic
CCTACTCAATGCAGTTTGAC+AGG 0.466205 8.1:+21958142 MS.gene62866:CDS
GCTTTCCCTATAGTTTACTT+GGG 0.467404 8.1:-21957337 None:intergenic
TATGTGTTCAATAAACAATC+AGG 0.472517 8.1:+21957384 MS.gene62866:CDS
CCGCTTATCCCAAGATAAAG+AGG 0.478110 8.1:+21956837 MS.gene62866:CDS
TCAGTATGTCGGTACACTTA+GGG 0.480771 8.1:+21958098 MS.gene62866:CDS
TATCCACTACTTGGGTCCAT+GGG 0.482451 8.1:-21957447 None:intergenic
ATACCTCACTTCTGTGACTT+CGG 0.483194 8.1:-21957364 None:intergenic
TTCAGTATGTCGGTACACTT+AGG 0.488588 8.1:+21958097 MS.gene62866:CDS
TCCATTCGTGCTTGATCAGA+TGG 0.492171 8.1:+21956708 MS.gene62866:CDS
CGGACGATCATTCAAGGAAC+GGG 0.494140 8.1:+21956862 MS.gene62866:CDS
GAGGACCGGACGATCATTCA+AGG 0.514727 8.1:+21956856 MS.gene62866:CDS
TACACCAACAACCGGAAAGC+CGG 0.518143 8.1:-21957568 None:intergenic
CCGTTCCTTGAATGATCGTC+CGG 0.518352 8.1:-21956861 None:intergenic
TGAGACGTTGTGTGACCCCA+AGG 0.519530 8.1:+21956684 MS.gene62866:CDS
GCAGTTTGACAGGTTTGATA+CGG 0.520423 8.1:+21958152 MS.gene62866:CDS
GGAGATGTAATTGGTGATCT+CGG 0.520638 8.1:+21957753 MS.gene62866:CDS
CAAATTTGTATCCACTACTT+GGG 0.533919 8.1:-21957455 None:intergenic
ACTGCGCGTACACCAACAAC+CGG 0.534986 8.1:-21957576 None:intergenic
ATGAGCAATGGTGTTCTAGC+CGG 0.543808 8.1:+21957549 MS.gene62866:CDS
GCTGAGATGTTTCAGTATGT+CGG 0.550369 8.1:+21958087 MS.gene62866:CDS
TTCCAGAAGAATTCATTACT+GGG 0.551889 8.1:+21957502 MS.gene62866:CDS
TCCATCTGATCAAGCACGAA+TGG 0.552084 8.1:-21956709 None:intergenic
GACATGGAGAAGATGGAAGC+TGG 0.555973 8.1:+21956781 MS.gene62866:CDS
ATGCAGGTAGAAGCTAATGT+TGG 0.557514 8.1:+21957309 MS.gene62866:intron
TGACAAACCGGGTGGACTCA+AGG 0.561232 8.1:+21957806 MS.gene62866:CDS
TGACTTACCTTGAGTCCACC+CGG 0.568953 8.1:-21957813 None:intergenic
TGGTGTACGCGCAGTACTTG+TGG 0.572358 8.1:+21957584 MS.gene62866:CDS
CTTTCCCTATAGTTTACTTG+GGG 0.575513 8.1:-21957336 None:intergenic
GAACCCATGGACCCAAGTAG+TGG 0.580505 8.1:+21957444 MS.gene62866:CDS
AAATGTGAGGGTATTCCAGT+TGG 0.582925 8.1:+21957632 MS.gene62866:CDS
CCTGTCAAACTGCATTGAGT+AGG 0.586523 8.1:-21958142 None:intergenic
CCTCTTTATCTTGGGATAAG+CGG 0.587821 8.1:-21956837 None:intergenic
GGTTTGAAAGATACTATAGC+CGG 0.593470 8.1:+21956661 MS.gene62866:CDS
CTTGGGATAAGCGGAAAGAA+GGG 0.595180 8.1:-21956828 None:intergenic
ACCCAAAACTAAAGCTGACA+TGG 0.611458 8.1:+21956765 MS.gene62866:CDS
GGATGGTAATTACCATGATG+TGG 0.612641 8.1:+21957605 MS.gene62866:CDS
GGGGTCACACAACGTCTCAC+CGG 0.615808 8.1:-21956680 None:intergenic
TGGTTTAATCAAGCTTGCTG+AGG 0.618797 8.1:+21956801 MS.gene62866:CDS
GAGACGTTGTGTGACCCCAA+GGG 0.619509 8.1:+21956685 MS.gene62866:CDS
TCACATTTGAATCCACATCA+TGG 0.622810 8.1:-21957617 None:intergenic
CCGGACGATCATTCAAGGAA+CGG 0.623049 8.1:+21956861 MS.gene62866:CDS
GCACGTTTGTCAATAATCTG+AGG 0.626574 8.1:-21958202 None:intergenic
TGGTTACATCTGCAAATTGA+CGG 0.633657 8.1:-21957413 None:intergenic
TCCAGAAGAATTCATTACTG+GGG 0.636103 8.1:+21957503 MS.gene62866:CDS
ACACTTAGGGTGCTAACAGA+GGG 0.636398 8.1:+21958111 MS.gene62866:CDS
CAATCTTAATAACAGGAACA+GGG 0.636579 8.1:-21956735 None:intergenic
TATCCCAAGATAAAGAGGAC+CGG 0.637725 8.1:+21956842 MS.gene62866:CDS
GTGTTCAATAAACAATCAGG+TGG 0.650549 8.1:+21957387 MS.gene62866:CDS
TTGGAAGAGTGCATGAGCAA+TGG 0.663387 8.1:+21957537 MS.gene62866:CDS
TGATGTGGATTCAAATGTGA+GGG 0.666011 8.1:+21957620 MS.gene62866:CDS
ACTGCATTGAGTAGGATGCA+CGG 0.668859 8.1:-21958134 None:intergenic
TTTCCGAAGTCACAGAAGTG+AGG 0.671983 8.1:+21957361 MS.gene62866:CDS
TACACTTAGGGTGCTAACAG+AGG 0.673963 8.1:+21958110 MS.gene62866:CDS
GTACGCGCAGTACTTGTGGA+TGG 0.703304 8.1:+21957588 MS.gene62866:CDS
ATGATGTGGATTCAAATGTG+AGG 0.710458 8.1:+21957619 MS.gene62866:CDS
CAAGCACGAATGGACCCTTG+GGG 0.723589 8.1:-21956699 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCGATAATAATTTGAAAAA+TGG - chr8.1:21957966-21957985 None:intergenic 15.0%
!! TCAAATTTAATAAATGAACA+TGG - chr8.1:21957853-21957872 None:intergenic 15.0%
!! TGTTCATTTATTAAATTTGA+AGG + chr8.1:21957853-21957872 MS.gene62866:intron 15.0%
!! AAGGAAGTAATCATATAATA+GGG - chr8.1:21957182-21957201 None:intergenic 20.0%
!! ACAATTTCAACTTTCATTAT+AGG - chr8.1:21957714-21957733 None:intergenic 20.0%
!! ATATATATTAATGACGTATC+TGG + chr8.1:21957908-21957927 MS.gene62866:intron 20.0%
! AACAAATAATCATCCTTGAT+CGG - chr8.1:21957139-21957158 None:intergenic 25.0%
! AGGAAGTAATCATATAATAG+GGG - chr8.1:21957181-21957200 None:intergenic 25.0%
! ATTATAGGTTCAAGCATTAA+CGG - chr8.1:21957699-21957718 None:intergenic 25.0%
! CAAGGAAGTAATCATATAAT+AGG - chr8.1:21957183-21957202 None:intergenic 25.0%
! CCAAATCATAATAAGAAGTA+AGG + chr8.1:21957032-21957051 MS.gene62866:intron 25.0%
! CCTTACTTCTTATTATGATT+TGG - chr8.1:21957035-21957054 None:intergenic 25.0%
! TACATAAAACTGATGAAGAT+CGG - chr8.1:21957225-21957244 None:intergenic 25.0%
! TATGTGTTCAATAAACAATC+AGG + chr8.1:21957384-21957403 MS.gene62866:CDS 25.0%
! TCAATTGCAATCTTAATAAC+AGG - chr8.1:21956745-21956764 None:intergenic 25.0%
! TTGAATGTAACTACAAGTAT+TGG - chr8.1:21957937-21957956 None:intergenic 25.0%
! TTGTCTCAAAAGAGAATTTA+AGG + chr8.1:21956912-21956931 MS.gene62866:CDS 25.0%
!! ATTTTCTGTATCTGTTAACA+TGG + chr8.1:21956961-21956980 MS.gene62866:intron 25.0%
!! GAATATTGTTTTCTTCCTTT+TGG + chr8.1:21958025-21958044 MS.gene62866:intron 25.0%
!! TATCTAATGTTTGTTAATGC+AGG + chr8.1:21957293-21957312 MS.gene62866:intron 25.0%
!! TGTCACAAAAACTATTGATT+TGG - chr8.1:21957791-21957810 None:intergenic 25.0%
AAGAAAAAGGAATCATCTCA+AGG - chr8.1:21957201-21957220 None:intergenic 30.0%
ATGGATATTGTTACTCTTGT+TGG + chr8.1:21956640-21956659 MS.gene62866:CDS 30.0%
CAAATTTGTATCCACTACTT+GGG - chr8.1:21957458-21957477 None:intergenic 30.0%
CAATCTTAATAACAGGAACA+GGG - chr8.1:21956738-21956757 None:intergenic 30.0%
CATGAAAAAAAATGCTTACG+AGG + chr8.1:21957076-21957095 MS.gene62866:intron 30.0%
GAACATTTAGGAGATGTAAT+TGG + chr8.1:21957744-21957763 MS.gene62866:CDS 30.0%
TCAAATTTGTATCCACTACT+TGG - chr8.1:21957459-21957478 None:intergenic 30.0%
TTCCAGAAGAATTCATTACT+GGG + chr8.1:21957502-21957521 MS.gene62866:CDS 30.0%
! AATAGTTTTTGTGACAAACC+GGG + chr8.1:21957795-21957814 MS.gene62866:CDS 30.0%
! CAATAGTTTTTGTGACAAAC+CGG + chr8.1:21957794-21957813 MS.gene62866:CDS 30.0%
! TATTGTTTTCTTCCTTTTGG+TGG + chr8.1:21958028-21958047 MS.gene62866:intron 30.0%
! TTCATTACTGGGGTTTTTAA+AGG + chr8.1:21957513-21957532 MS.gene62866:CDS 30.0%
! TTTTCCCCAAGTAAACTATA+GGG + chr8.1:21957332-21957351 MS.gene62866:CDS 30.0%
!!! TCTTTTGAGACAATCAACAA+TGG - chr8.1:21956905-21956924 None:intergenic 30.0%
ACATCTCCTAAATGTTCTTC+AGG - chr8.1:21957741-21957760 None:intergenic 35.0%
ATGATGTGGATTCAAATGTG+AGG + chr8.1:21957619-21957638 MS.gene62866:CDS 35.0%
CTTCCAGAAGAATTCATTAC+TGG + chr8.1:21957501-21957520 MS.gene62866:CDS 35.0%
CTTTCCCTATAGTTTACTTG+GGG - chr8.1:21957339-21957358 None:intergenic 35.0%
GACAGACATGGATTTATTCA+AGG - chr8.1:21957114-21957133 None:intergenic 35.0%
GATGAAGATCGGAAAGAAAA+AGG - chr8.1:21957214-21957233 None:intergenic 35.0%
GATTTGAAAGCTATGTAGCA+CGG + chr8.1:21957879-21957898 MS.gene62866:intron 35.0%
GCAATCTTAATAACAGGAAC+AGG - chr8.1:21956739-21956758 None:intergenic 35.0%
GCTTTCCCTATAGTTTACTT+GGG - chr8.1:21957340-21957359 None:intergenic 35.0%
GGTTTGAAAGATACTATAGC+CGG + chr8.1:21956661-21956680 MS.gene62866:CDS 35.0%
GTGTTCAATAAACAATCAGG+TGG + chr8.1:21957387-21957406 MS.gene62866:CDS 35.0%
GTTACTCCTGAAGAACATTT+AGG + chr8.1:21957732-21957751 MS.gene62866:CDS 35.0%
TACTGAAACATCTCAGCAAT+AGG - chr8.1:21958084-21958103 None:intergenic 35.0%
TCACATTTGAATCCACATCA+TGG - chr8.1:21957620-21957639 None:intergenic 35.0%
TCCAGAAGAATTCATTACTG+GGG + chr8.1:21957503-21957522 MS.gene62866:CDS 35.0%
TGATGTGGATTCAAATGTGA+GGG + chr8.1:21957620-21957639 MS.gene62866:CDS 35.0%
TGCTTTCCCTATAGTTTACT+TGG - chr8.1:21957341-21957360 None:intergenic 35.0%
TGGTTACATCTGCAAATTGA+CGG - chr8.1:21957416-21957435 None:intergenic 35.0%
! AACCATACATTTTGAACCCA+TGG + chr8.1:21957431-21957450 MS.gene62866:CDS 35.0%
! GTTTTCCCCAAGTAAACTAT+AGG + chr8.1:21957331-21957350 MS.gene62866:CDS 35.0%
!! TACTGGGGTTTTTAAAGGAT+TGG + chr8.1:21957518-21957537 MS.gene62866:CDS 35.0%
!!! TCCATGTCAGCTTTAGTTTT+GGG - chr8.1:21956769-21956788 None:intergenic 35.0%
ACCCAAAACTAAAGCTGACA+TGG + chr8.1:21956765-21956784 MS.gene62866:CDS 40.0%
ACCCCAGTAATGAATTCTTC+TGG - chr8.1:21957507-21957526 None:intergenic 40.0%
AGGTTCAAGCATTAACGGTT+TGG - chr8.1:21957694-21957713 None:intergenic 40.0%
ATACCTCACTTCTGTGACTT+CGG - chr8.1:21957367-21957386 None:intergenic 40.0%
ATGCAGGTAGAAGCTAATGT+TGG + chr8.1:21957309-21957328 MS.gene62866:intron 40.0%
CCTCTTTATCTTGGGATAAG+CGG - chr8.1:21956840-21956859 None:intergenic 40.0%
GCAGTTTGACAGGTTTGATA+CGG + chr8.1:21958152-21958171 MS.gene62866:CDS 40.0%
GCTGAGATGTTTCAGTATGT+CGG + chr8.1:21958087-21958106 MS.gene62866:CDS 40.0%
GGATGGTAATTACCATGATG+TGG + chr8.1:21957605-21957624 MS.gene62866:CDS 40.0%
GTCCATGGGTTCAAAATGTA+TGG - chr8.1:21957436-21957455 None:intergenic 40.0%
TAAAGCTGACATGGAGAAGA+TGG + chr8.1:21956774-21956793 MS.gene62866:CDS 40.0%
TATCCCAAGATAAAGAGGAC+CGG + chr8.1:21956842-21956861 MS.gene62866:CDS 40.0%
TCAGTATGTCGGTACACTTA+GGG + chr8.1:21958098-21958117 MS.gene62866:CDS 40.0%
TTCAGTATGTCGGTACACTT+AGG + chr8.1:21958097-21958116 MS.gene62866:CDS 40.0%
! CTGTTTTCACAACCACCAAA+AGG - chr8.1:21958043-21958062 None:intergenic 40.0%
! GGAGATGTAATTGGTGATCT+CGG + chr8.1:21957753-21957772 MS.gene62866:CDS 40.0%
!! AAATGTGAGGGTATTCCAGT+TGG + chr8.1:21957632-21957651 MS.gene62866:CDS 40.0%
!! CTCCATGTCAGCTTTAGTTT+TGG - chr8.1:21956770-21956789 None:intergenic 40.0%
!! CTTTTGGTGGTTGTGAAAAC+AGG + chr8.1:21958041-21958060 MS.gene62866:intron 40.0%
!! TGGTTTAATCAAGCTTGCTG+AGG + chr8.1:21956801-21956820 MS.gene62866:CDS 40.0%
ACTGCATTGAGTAGGATGCA+CGG - chr8.1:21958137-21958156 None:intergenic 45.0%
ATGAGCAATGGTGTTCTAGC+CGG + chr8.1:21957549-21957568 MS.gene62866:CDS 45.0%
CCGCTTATCCCAAGATAAAG+AGG + chr8.1:21956837-21956856 MS.gene62866:CDS 45.0%
CCTACTCAATGCAGTTTGAC+AGG + chr8.1:21958142-21958161 MS.gene62866:CDS 45.0%
CCTGTCAAACTGCATTGAGT+AGG - chr8.1:21958145-21958164 None:intergenic 45.0%
CTTGGGATAAGCGGAAAGAA+GGG - chr8.1:21956831-21956850 None:intergenic 45.0%
TATCCACTACTTGGGTCCAT+GGG - chr8.1:21957450-21957469 None:intergenic 45.0%
TCCATCTGATCAAGCACGAA+TGG - chr8.1:21956712-21956731 None:intergenic 45.0%
TCCATTCGTGCTTGATCAGA+TGG + chr8.1:21956708-21956727 MS.gene62866:CDS 45.0%
TCTTGGGATAAGCGGAAAGA+AGG - chr8.1:21956832-21956851 None:intergenic 45.0%
TTTCCGAAGTCACAGAAGTG+AGG + chr8.1:21957361-21957380 MS.gene62866:CDS 45.0%
! ACACTTAGGGTGCTAACAGA+GGG + chr8.1:21958111-21958130 MS.gene62866:CDS 45.0%
! AGTTTTTGTGACAAACCGGG+TGG + chr8.1:21957798-21957817 MS.gene62866:CDS 45.0%
! GGCAGCAAGAGAAGCTTTTA+GGG + chr8.1:21957653-21957672 MS.gene62866:CDS 45.0%
! TACACTTAGGGTGCTAACAG+AGG + chr8.1:21958110-21958129 MS.gene62866:CDS 45.0%
! TGGCAGCAAGAGAAGCTTTT+AGG + chr8.1:21957652-21957671 MS.gene62866:CDS 45.0%
! TTGGAAGAGTGCATGAGCAA+TGG + chr8.1:21957537-21957556 MS.gene62866:CDS 45.0%
! TTGGTGGTTGTGAAAACAGG+TGG + chr8.1:21958044-21958063 MS.gene62866:intron 45.0%
!! GCAAGAGAAGCTTTTAGGGA+AGG + chr8.1:21957657-21957676 MS.gene62866:CDS 45.0%
AAGCTTCTCTTGCTGCCAAC+TGG - chr8.1:21957650-21957669 None:intergenic 50.0%
ATCAAGCACGAATGGACCCT+TGG - chr8.1:21956704-21956723 None:intergenic 50.0%
CCATGTCTGTCATCCGATCA+AGG + chr8.1:21957123-21957142 MS.gene62866:intron 50.0%
CCGGACGATCATTCAAGGAA+CGG + chr8.1:21956861-21956880 MS.gene62866:CDS 50.0%
CCGTTCCTTGAATGATCGTC+CGG - chr8.1:21956864-21956883 None:intergenic 50.0%
CCTTGATCGGATGACAGACA+TGG - chr8.1:21957126-21957145 None:intergenic 50.0%
CGGACGATCATTCAAGGAAC+GGG + chr8.1:21956862-21956881 MS.gene62866:CDS 50.0%
CGTCCGGTCCTCTTTATCTT+GGG - chr8.1:21956848-21956867 None:intergenic 50.0%
GACATGGAGAAGATGGAAGC+TGG + chr8.1:21956781-21956800 MS.gene62866:CDS 50.0%
GGTGATCTCGGCAGAAAAAG+AGG + chr8.1:21957765-21957784 MS.gene62866:CDS 50.0%
GTATCCACTACTTGGGTCCA+TGG - chr8.1:21957451-21957470 None:intergenic 50.0%
TACACCAACAACCGGAAAGC+CGG - chr8.1:21957571-21957590 None:intergenic 50.0%
TCAAGCACGAATGGACCCTT+GGG - chr8.1:21956703-21956722 None:intergenic 50.0%
TCGTCCGGTCCTCTTTATCT+TGG - chr8.1:21956849-21956868 None:intergenic 50.0%
TGACTTACCTTGAGTCCACC+CGG - chr8.1:21957816-21957835 None:intergenic 50.0%
ACTGCGCGTACACCAACAAC+CGG - chr8.1:21957579-21957598 None:intergenic 55.0%
CAAGCACGAATGGACCCTTG+GGG - chr8.1:21956702-21956721 None:intergenic 55.0%
GAACCCATGGACCCAAGTAG+TGG + chr8.1:21957444-21957463 MS.gene62866:CDS 55.0%
GAGACGTTGTGTGACCCCAA+GGG + chr8.1:21956685-21956704 MS.gene62866:CDS 55.0%
GAGGACCGGACGATCATTCA+AGG + chr8.1:21956856-21956875 MS.gene62866:CDS 55.0%
GTACGCGCAGTACTTGTGGA+TGG + chr8.1:21957588-21957607 MS.gene62866:CDS 55.0%
TGAGACGTTGTGTGACCCCA+AGG + chr8.1:21956684-21956703 MS.gene62866:CDS 55.0%
TGGTGTACGCGCAGTACTTG+TGG + chr8.1:21957584-21957603 MS.gene62866:CDS 55.0%
! TGACAAACCGGGTGGACTCA+AGG + chr8.1:21957806-21957825 MS.gene62866:CDS 55.0%
! TGGTGTTCTAGCCGGCTTTC+CGG + chr8.1:21957557-21957576 MS.gene62866:CDS 55.0%
GGGGTCACACAACGTCTCAC+CGG - chr8.1:21956683-21956702 None:intergenic 60.0%
! CTAGCCGGCTTTCCGGTTGT+TGG + chr8.1:21957564-21957583 MS.gene62866:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 21956640 21958215 21956640 ID=MS.gene62866
chr8.1 mRNA 21956640 21958215 21956640 ID=MS.gene62866.t1;Parent=MS.gene62866
chr8.1 exon 21956640 21956933 21956640 ID=MS.gene62866.t1.exon1;Parent=MS.gene62866.t1
chr8.1 CDS 21956640 21956933 21956640 ID=cds.MS.gene62866.t1;Parent=MS.gene62866.t1
chr8.1 exon 21957315 21957827 21957315 ID=MS.gene62866.t1.exon2;Parent=MS.gene62866.t1
chr8.1 CDS 21957315 21957827 21957315 ID=cds.MS.gene62866.t1;Parent=MS.gene62866.t1
chr8.1 exon 21958063 21958215 21958063 ID=MS.gene62866.t1.exon3;Parent=MS.gene62866.t1
chr8.1 CDS 21958063 21958215 21958063 ID=cds.MS.gene62866.t1;Parent=MS.gene62866.t1
Gene Sequence

>MS.gene62866

ATGGATATTGTTACTCTTGTTGGTTTGAAAGATACTATAGCCGGTGAGACGTTGTGTGACCCCAAGGGTCCATTCGTGCTTGATCAGATGGACTTCCCTGTTCCTGTTATTAAGATTGCAATTGAACCCAAAACTAAAGCTGACATGGAGAAGATGGAAGCTGGTTTAATCAAGCTTGCTGAGGAAGACCCTTCTTTCCGCTTATCCCAAGATAAAGAGGACCGGACGATCATTCAAGGAACGGGAGAATTGCATCTTGAAACCATTGTTGATTGTCTCAAAAGAGAATTTAAGGTTATATTCTTTATTTCGTTTATGAGAATTTTCTGTATCTGTTAACATGGTTGTGTTTTTTCTCTCTCAATTTATCATTCATATATATACTTACAATTCCAAATCATAATAAGAAGTAAGGAGAATAAATGAATGAATTCGTCATGAAAAAAAATGCTTACGAGGCATGACTATGATCCTTGAATAAATCCATGTCTGTCATCCGATCAAGGATGATTATTTGTTAATTGATGCTATTTTTCTACCCCTATTATATGATTACTTCCTTGAGATGATTCCTTTTTCTTTCCGATCTTCATCAGTTTTATGTAAGAATGTGTATGTTTTTATGTGATAGCATAAATTTTGTGAAGATCACATATCTAATGTTTGTTAATGCAGGTAGAAGCTAATGTTGGTTTTCCCCAAGTAAACTATAGGGAAAGCATTTCCGAAGTCACAGAAGTGAGGTATGTGTTCAATAAACAATCAGGTGGACACCGTCAATTTGCAGATGTAACCATACATTTTGAACCCATGGACCCAAGTAGTGGATACAAATTTGAGAATAAAATCAAAGAAGAAGCACTTCCAGAAGAATTCATTACTGGGGTTTTTAAAGGATTGGAAGAGTGCATGAGCAATGGTGTTCTAGCCGGCTTTCCGGTTGTTGGTGTACGCGCAGTACTTGTGGATGGTAATTACCATGATGTGGATTCAAATGTGAGGGTATTCCAGTTGGCAGCAAGAGAAGCTTTTAGGGAAGGAATGAGAAAAGCCAAACCGTTAATGCTTGAACCTATAATGAAAGTTGAAATTGTTACTCCTGAAGAACATTTAGGAGATGTAATTGGTGATCTCGGCAGAAAAAGAGGCCAAATCAATAGTTTTTGTGACAAACCGGGTGGACTCAAGGTAAGTCACAAAACACTGTTCTCCATGTTCATTTATTAAATTTGAAGGTATGATTTGAAAGCTATGTAGCACGGCACTTCATATATATTAATGACGTATCTGGTGTCCAATACTTGTAGTTACATTCAATTTCTTCCATTTTTCAAATTATTATCGATGTCAATGTCTCAGTTGTGTTTGTTGTATCATCTAGAACTGAATATTGTTTTCTTCCTTTTGGTGGTTGTGAAAACAGGTGGTTGATTCATTAGTACCTATTGCTGAGATGTTTCAGTATGTCGGTACACTTAGGGTGCTAACAGAGGGCCGTGCATCCTACTCAATGCAGTTTGACAGGTTTGATACGGTATCTCGACACATTCAGAATGAACTTGCCTCAGATTATTGA

Protein sequence

>MS.gene62866.t1

MDIVTLVGLKDTIAGETLCDPKGPFVLDQMDFPVPVIKIAIEPKTKADMEKMEAGLIKLAEEDPSFRLSQDKEDRTIIQGTGELHLETIVDCLKREFKVEANVGFPQVNYRESISEVTEVRYVFNKQSGGHRQFADVTIHFEPMDPSSGYKFENKIKEEALPEEFITGVFKGLEECMSNGVLAGFPVVGVRAVLVDGNYHDVDSNVRVFQLAAREAFREGMRKAKPLMLEPIMKVEIVTPEEHLGDVIGDLGRKRGQINSFCDKPGGLKVVDSLVPIAEMFQYVGTLRVLTEGRASYSMQFDRFDTVSRHIQNELASDY