Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62866.t1 | XP_017441072.1 | 75.4 | 317 | 77 | 1 | 2 | 317 | 456 | 772 | 6.20E-133 | 483.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62866.t1 | P34811 | 74.4 | 317 | 80 | 1 | 2 | 317 | 464 | 780 | 1.6e-134 | 480.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62866.t1 | A0A0L9TR12 | 75.4 | 317 | 77 | 1 | 2 | 317 | 456 | 772 | 4.4e-133 | 483.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049137 | MS.gene62866 | 0.806461 | 8.14E-50 | -1.69E-46 |
MS.gene049171 | MS.gene62866 | 0.889746 | 1.84E-73 | -1.69E-46 |
MS.gene049173 | MS.gene62866 | 0.839367 | 1.65E-57 | -1.69E-46 |
MS.gene049217 | MS.gene62866 | 0.843087 | 1.74E-58 | -1.69E-46 |
MS.gene049222 | MS.gene62866 | 0.861052 | 1.34E-63 | -1.69E-46 |
MS.gene049285 | MS.gene62866 | 0.877707 | 5.06E-69 | -1.69E-46 |
MS.gene049320 | MS.gene62866 | 0.874594 | 5.98E-68 | -1.69E-46 |
MS.gene049609 | MS.gene62866 | 0.862467 | 4.97E-64 | -1.69E-46 |
MS.gene049633 | MS.gene62866 | 0.864911 | 8.65E-65 | -1.69E-46 |
MS.gene049805 | MS.gene62866 | 0.840618 | 7.80E-58 | -1.69E-46 |
MS.gene05010 | MS.gene62866 | 0.816376 | 5.71E-52 | -1.69E-46 |
MS.gene050163 | MS.gene62866 | 0.828668 | 7.91E-55 | -1.69E-46 |
MS.gene050165 | MS.gene62866 | 0.826725 | 2.32E-54 | -1.69E-46 |
MS.gene050170 | MS.gene62866 | 0.809693 | 1.67E-50 | -1.69E-46 |
MS.gene050323 | MS.gene62866 | 0.831199 | 1.91E-55 | -1.69E-46 |
MS.gene050333 | MS.gene62866 | 0.84447 | 7.41E-59 | -1.69E-46 |
MS.gene050444 | MS.gene62866 | 0.835491 | 1.63E-56 | -1.69E-46 |
MS.gene050496 | MS.gene62866 | 0.820554 | 6.45E-53 | -1.69E-46 |
MS.gene050504 | MS.gene62866 | 0.842584 | 2.36E-58 | -1.69E-46 |
MS.gene050518 | MS.gene62866 | 0.851992 | 6.18E-61 | -1.69E-46 |
MS.gene050538 | MS.gene62866 | 0.807472 | 4.97E-50 | -1.69E-46 |
MS.gene050577 | MS.gene62866 | 0.85259 | 4.18E-61 | -1.69E-46 |
MS.gene050593 | MS.gene62866 | 0.820681 | 6.03E-53 | -1.69E-46 |
MS.gene050612 | MS.gene62866 | 0.872607 | 2.79E-67 | -1.69E-46 |
MS.gene050662 | MS.gene62866 | 0.817303 | 3.54E-52 | -1.69E-46 |
MS.gene050675 | MS.gene62866 | 0.858648 | 7.13E-63 | -1.69E-46 |
MS.gene050690 | MS.gene62866 | 0.822001 | 2.99E-53 | -1.69E-46 |
MS.gene050699 | MS.gene62866 | 0.879383 | 1.30E-69 | -1.69E-46 |
MS.gene050747 | MS.gene62866 | 0.836561 | 8.71E-57 | -1.69E-46 |
MS.gene050772 | MS.gene62866 | 0.8884 | 6.11E-73 | -1.69E-46 |
MS.gene05080 | MS.gene62866 | 0.858954 | 5.78E-63 | -1.69E-46 |
MS.gene05081 | MS.gene62866 | 0.802895 | 4.52E-49 | -1.69E-46 |
MS.gene050868 | MS.gene62866 | 0.818638 | 1.77E-52 | -1.69E-46 |
MS.gene050871 | MS.gene62866 | 0.815368 | 9.58E-52 | -1.69E-46 |
MS.gene050950 | MS.gene62866 | 0.823763 | 1.16E-53 | -1.69E-46 |
MS.gene050986 | MS.gene62866 | 0.837413 | 5.28E-57 | -1.69E-46 |
MS.gene05100 | MS.gene62866 | 0.811499 | 6.79E-51 | -1.69E-46 |
MS.gene051228 | MS.gene62866 | 0.803158 | 3.98E-49 | -1.69E-46 |
MS.gene051317 | MS.gene62866 | 0.831527 | 1.59E-55 | -1.69E-46 |
MS.gene051551 | MS.gene62866 | 0.824606 | 7.37E-54 | -1.69E-46 |
MS.gene051666 | MS.gene62866 | 0.818376 | 2.02E-52 | -1.69E-46 |
MS.gene051810 | MS.gene62866 | 0.840678 | 7.53E-58 | -1.69E-46 |
MS.gene051838 | MS.gene62866 | 0.828732 | 7.64E-55 | -1.69E-46 |
MS.gene051858 | MS.gene62866 | 0.822193 | 2.70E-53 | -1.69E-46 |
MS.gene051874 | MS.gene62866 | 0.800653 | 1.30E-48 | -1.69E-46 |
MS.gene051949 | MS.gene62866 | 0.821565 | 3.77E-53 | -1.69E-46 |
MS.gene052164 | MS.gene62866 | 0.831213 | 1.90E-55 | -1.69E-46 |
MS.gene052271 | MS.gene62866 | 0.805861 | 1.09E-49 | -1.69E-46 |
MS.gene052482 | MS.gene62866 | 0.829279 | 5.63E-55 | -1.69E-46 |
MS.gene052486 | MS.gene62866 | 0.830972 | 2.17E-55 | -1.69E-46 |
MS.gene052503 | MS.gene62866 | 0.858714 | 6.81E-63 | -1.69E-46 |
MS.gene052504 | MS.gene62866 | 0.816859 | 4.45E-52 | -1.69E-46 |
MS.gene052506 | MS.gene62866 | 0.869239 | 3.59E-66 | -1.69E-46 |
MS.gene052615 | MS.gene62866 | 0.846934 | 1.59E-59 | -1.69E-46 |
MS.gene052820 | MS.gene62866 | 0.836343 | 9.89E-57 | -1.69E-46 |
MS.gene052822 | MS.gene62866 | 0.87133 | 7.42E-67 | -1.69E-46 |
MS.gene052823 | MS.gene62866 | 0.849923 | 2.37E-60 | -1.69E-46 |
MS.gene052825 | MS.gene62866 | 0.845183 | 4.76E-59 | -1.69E-46 |
MS.gene052870 | MS.gene62866 | 0.810651 | 1.04E-50 | -1.69E-46 |
MS.gene052872 | MS.gene62866 | 0.824089 | 9.75E-54 | -1.69E-46 |
MS.gene052916 | MS.gene62866 | 0.83204 | 1.19E-55 | -1.69E-46 |
MS.gene052966 | MS.gene62866 | 0.808009 | 3.82E-50 | -1.69E-46 |
MS.gene053104 | MS.gene62866 | 0.820487 | 6.68E-53 | -1.69E-46 |
MS.gene053203 | MS.gene62866 | 0.836738 | 7.85E-57 | -1.69E-46 |
MS.gene053207 | MS.gene62866 | 0.844514 | 7.21E-59 | -1.69E-46 |
MS.gene053213 | MS.gene62866 | 0.861232 | 1.19E-63 | -1.69E-46 |
MS.gene053286 | MS.gene62866 | 0.858656 | 7.09E-63 | -1.69E-46 |
MS.gene053436 | MS.gene62866 | 0.812263 | 4.63E-51 | -1.69E-46 |
MS.gene053479 | MS.gene62866 | 0.826488 | 2.64E-54 | -1.69E-46 |
MS.gene053480 | MS.gene62866 | 0.827081 | 1.91E-54 | -1.69E-46 |
MS.gene053574 | MS.gene62866 | 0.847888 | 8.70E-60 | -1.69E-46 |
MS.gene053626 | MS.gene62866 | 0.81815 | 2.28E-52 | -1.69E-46 |
MS.gene053632 | MS.gene62866 | 0.881503 | 2.27E-70 | -1.69E-46 |
MS.gene053824 | MS.gene62866 | 0.849494 | 3.12E-60 | -1.69E-46 |
MS.gene053916 | MS.gene62866 | 0.87497 | 4.45E-68 | -1.69E-46 |
MS.gene054003 | MS.gene62866 | 0.809934 | 1.48E-50 | -1.69E-46 |
MS.gene054595 | MS.gene62866 | 0.83418 | 3.48E-56 | -1.69E-46 |
MS.gene054600 | MS.gene62866 | 0.866297 | 3.16E-65 | -1.69E-46 |
MS.gene054642 | MS.gene62866 | 0.883112 | 5.91E-71 | -1.69E-46 |
MS.gene05470 | MS.gene62866 | 0.815965 | 7.05E-52 | -1.69E-46 |
MS.gene054954 | MS.gene62866 | 0.864893 | 8.76E-65 | -1.69E-46 |
MS.gene05505 | MS.gene62866 | 0.827969 | 1.17E-54 | -1.69E-46 |
MS.gene055206 | MS.gene62866 | 0.856763 | 2.58E-62 | -1.69E-46 |
MS.gene055224 | MS.gene62866 | 0.801844 | 7.43E-49 | -1.69E-46 |
MS.gene055289 | MS.gene62866 | 0.820205 | 7.76E-53 | -1.69E-46 |
MS.gene055362 | MS.gene62866 | 0.871656 | 5.79E-67 | -1.69E-46 |
MS.gene055502 | MS.gene62866 | 0.879469 | 1.22E-69 | -1.69E-46 |
MS.gene055577 | MS.gene62866 | 0.864826 | 9.20E-65 | -1.69E-46 |
MS.gene055722 | MS.gene62866 | 0.846613 | 1.95E-59 | -1.69E-46 |
MS.gene055748 | MS.gene62866 | 0.833593 | 4.88E-56 | -1.69E-46 |
MS.gene055750 | MS.gene62866 | 0.842743 | 2.15E-58 | -1.69E-46 |
MS.gene055751 | MS.gene62866 | 0.833509 | 5.12E-56 | -1.69E-46 |
MS.gene055776 | MS.gene62866 | 0.807118 | 5.91E-50 | -1.69E-46 |
MS.gene055849 | MS.gene62866 | 0.80987 | 1.53E-50 | -1.69E-46 |
MS.gene05589 | MS.gene62866 | 0.815687 | 8.14E-52 | -1.69E-46 |
MS.gene05592 | MS.gene62866 | 0.822885 | 1.86E-53 | -1.69E-46 |
MS.gene055941 | MS.gene62866 | 0.834688 | 2.59E-56 | -1.69E-46 |
MS.gene056046 | MS.gene62866 | 0.809296 | 2.03E-50 | -1.69E-46 |
MS.gene056374 | MS.gene62866 | 0.839094 | 1.95E-57 | -1.69E-46 |
MS.gene056487 | MS.gene62866 | 0.822014 | 2.97E-53 | -1.69E-46 |
MS.gene056504 | MS.gene62866 | 0.843228 | 1.59E-58 | -1.69E-46 |
MS.gene056510 | MS.gene62866 | 0.861831 | 7.78E-64 | -1.69E-46 |
MS.gene056657 | MS.gene62866 | 0.881439 | 2.40E-70 | -1.69E-46 |
MS.gene056692 | MS.gene62866 | 0.843217 | 1.60E-58 | -1.69E-46 |
MS.gene056898 | MS.gene62866 | 0.805319 | 1.41E-49 | -1.69E-46 |
MS.gene057076 | MS.gene62866 | 0.865344 | 6.32E-65 | -1.69E-46 |
MS.gene057129 | MS.gene62866 | 0.807024 | 6.19E-50 | -1.69E-46 |
MS.gene057331 | MS.gene62866 | 0.829752 | 4.32E-55 | -1.69E-46 |
MS.gene057416 | MS.gene62866 | 0.865848 | 4.38E-65 | -1.69E-46 |
MS.gene057658 | MS.gene62866 | 0.834523 | 2.85E-56 | -1.69E-46 |
MS.gene057734 | MS.gene62866 | 0.810771 | 9.77E-51 | -1.69E-46 |
MS.gene057831 | MS.gene62866 | 0.846141 | 2.62E-59 | -1.69E-46 |
MS.gene057856 | MS.gene62866 | 0.810217 | 1.29E-50 | -1.69E-46 |
MS.gene057857 | MS.gene62866 | 0.816987 | 4.17E-52 | -1.69E-46 |
MS.gene057926 | MS.gene62866 | 0.802816 | 4.69E-49 | -1.69E-46 |
MS.gene058019 | MS.gene62866 | 0.820755 | 5.80E-53 | -1.69E-46 |
MS.gene058334 | MS.gene62866 | -0.824118 | 9.60E-54 | -1.69E-46 |
MS.gene058338 | MS.gene62866 | 0.827512 | 1.50E-54 | -1.69E-46 |
MS.gene05837 | MS.gene62866 | 0.811508 | 6.76E-51 | -1.69E-46 |
MS.gene058382 | MS.gene62866 | -0.824954 | 6.10E-54 | -1.69E-46 |
MS.gene058419 | MS.gene62866 | 0.899779 | 1.41E-77 | -1.69E-46 |
MS.gene058544 | MS.gene62866 | 0.851394 | 9.13E-61 | -1.69E-46 |
MS.gene058723 | MS.gene62866 | 0.85454 | 1.15E-61 | -1.69E-46 |
MS.gene058773 | MS.gene62866 | 0.839963 | 1.16E-57 | -1.69E-46 |
MS.gene058838 | MS.gene62866 | 0.871436 | 6.85E-67 | -1.69E-46 |
MS.gene059022 | MS.gene62866 | 0.849884 | 2.43E-60 | -1.69E-46 |
MS.gene059023 | MS.gene62866 | 0.859228 | 4.78E-63 | -1.69E-46 |
MS.gene059029 | MS.gene62866 | 0.834425 | 3.02E-56 | -1.69E-46 |
MS.gene05913 | MS.gene62866 | 0.822936 | 1.81E-53 | -1.69E-46 |
MS.gene05934 | MS.gene62866 | 0.810512 | 1.11E-50 | -1.69E-46 |
MS.gene059667 | MS.gene62866 | 0.814222 | 1.72E-51 | -1.69E-46 |
MS.gene059677 | MS.gene62866 | 0.878077 | 3.76E-69 | -1.69E-46 |
MS.gene059699 | MS.gene62866 | -0.811418 | 7.07E-51 | -1.69E-46 |
MS.gene059703 | MS.gene62866 | -0.808205 | 3.47E-50 | -1.69E-46 |
MS.gene059718 | MS.gene62866 | 0.878718 | 2.24E-69 | -1.69E-46 |
MS.gene059756 | MS.gene62866 | 0.842002 | 3.37E-58 | -1.69E-46 |
MS.gene059865 | MS.gene62866 | 0.840631 | 7.74E-58 | -1.69E-46 |
MS.gene059902 | MS.gene62866 | 0.817592 | 3.04E-52 | -1.69E-46 |
MS.gene060703 | MS.gene62866 | 0.827478 | 1.53E-54 | -1.69E-46 |
MS.gene060762 | MS.gene62866 | 0.839369 | 1.65E-57 | -1.69E-46 |
MS.gene06077 | MS.gene62866 | 0.822536 | 2.25E-53 | -1.69E-46 |
MS.gene060804 | MS.gene62866 | 0.808244 | 3.41E-50 | -1.69E-46 |
MS.gene060835 | MS.gene62866 | 0.843737 | 1.17E-58 | -1.69E-46 |
MS.gene06092 | MS.gene62866 | 0.844673 | 6.53E-59 | -1.69E-46 |
MS.gene060982 | MS.gene62866 | 0.851651 | 7.72E-61 | -1.69E-46 |
MS.gene061150 | MS.gene62866 | 0.841406 | 4.84E-58 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62866.t1 | MTR_4g101750 | 75.079 | 317 | 78 | 1 | 2 | 317 | 456 | 772 | 3.73e-169 | 489 |
MS.gene62866.t1 | MTR_4g101750 | 74.194 | 279 | 70 | 2 | 2 | 278 | 456 | 734 | 5.04e-142 | 419 |
MS.gene62866.t1 | MTR_4g101740 | 73.063 | 271 | 37 | 2 | 1 | 271 | 1 | 235 | 5.63e-132 | 375 |
MS.gene62866.t1 | MTR_7g044770 | 36.562 | 320 | 198 | 4 | 3 | 319 | 250 | 567 | 5.99e-67 | 219 |
MS.gene62866.t1 | MTR_7g044770 | 36.562 | 320 | 198 | 4 | 3 | 319 | 427 | 744 | 9.19e-66 | 220 |
MS.gene62866.t1 | MTR_2g020660 | 34.891 | 321 | 184 | 6 | 3 | 319 | 421 | 720 | 4.88e-56 | 193 |
MS.gene62866.t1 | MTR_1g048000 | 26.593 | 361 | 207 | 13 | 2 | 308 | 450 | 806 | 4.46e-22 | 97.4 |
MS.gene62866.t1 | MTR_2g069050 | 26.316 | 361 | 208 | 11 | 2 | 308 | 450 | 806 | 6.60e-22 | 96.7 |
MS.gene62866.t1 | MTR_2g069310 | 26.316 | 361 | 208 | 11 | 2 | 308 | 450 | 806 | 7.11e-22 | 96.7 |
MS.gene62866.t1 | MTR_2g069320 | 27.389 | 314 | 174 | 8 | 44 | 307 | 496 | 805 | 3.64e-18 | 85.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene62866.t1 | AT1G62750 | 72.555 | 317 | 86 | 1 | 2 | 317 | 460 | 776 | 1.16e-163 | 475 |
MS.gene62866.t1 | AT1G45332 | 38.438 | 320 | 192 | 4 | 3 | 319 | 250 | 567 | 1.30e-70 | 229 |
MS.gene62866.t1 | AT1G45332 | 38.438 | 320 | 192 | 4 | 3 | 319 | 430 | 747 | 2.99e-69 | 229 |
MS.gene62866.t1 | AT2G45030 | 38.438 | 320 | 192 | 4 | 3 | 319 | 430 | 747 | 3.18e-69 | 229 |
MS.gene62866.t1 | AT1G56070 | 26.316 | 361 | 208 | 11 | 2 | 308 | 450 | 806 | 1.32e-21 | 95.9 |
MS.gene62866.t1 | AT1G56070 | 26.316 | 361 | 208 | 11 | 2 | 308 | 450 | 806 | 1.32e-21 | 95.9 |
MS.gene62866.t1 | AT1G56070 | 26.316 | 361 | 208 | 11 | 2 | 308 | 450 | 806 | 1.32e-21 | 95.9 |
MS.gene62866.t1 | AT3G12915 | 26.984 | 315 | 175 | 9 | 44 | 308 | 442 | 751 | 2.59e-18 | 86.3 |
Find 83 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGTCTCAAAAGAGAATTTA+AGG | 0.150412 | 8.1:+21956912 | MS.gene62866:CDS |
CTCCATGTCAGCTTTAGTTT+TGG | 0.200742 | 8.1:-21956767 | None:intergenic |
ACAATTTCAACTTTCATTAT+AGG | 0.216886 | 8.1:-21957711 | None:intergenic |
TGGTGTTCTAGCCGGCTTTC+CGG | 0.222511 | 8.1:+21957557 | MS.gene62866:CDS |
GTTACTCCTGAAGAACATTT+AGG | 0.259112 | 8.1:+21957732 | MS.gene62866:CDS |
ACATCTCCTAAATGTTCTTC+AGG | 0.320044 | 8.1:-21957738 | None:intergenic |
CTTCCAGAAGAATTCATTAC+TGG | 0.320246 | 8.1:+21957501 | MS.gene62866:CDS |
TCAATTGCAATCTTAATAAC+AGG | 0.329367 | 8.1:-21956742 | None:intergenic |
GAACATTTAGGAGATGTAAT+TGG | 0.332221 | 8.1:+21957744 | MS.gene62866:CDS |
TGCTTTCCCTATAGTTTACT+TGG | 0.338998 | 8.1:-21957338 | None:intergenic |
ATGGATATTGTTACTCTTGT+TGG | 0.342618 | 8.1:+21956640 | MS.gene62866:CDS |
ACCCCAGTAATGAATTCTTC+TGG | 0.342666 | 8.1:-21957504 | None:intergenic |
GCAATCTTAATAACAGGAAC+AGG | 0.342806 | 8.1:-21956736 | None:intergenic |
TCGTCCGGTCCTCTTTATCT+TGG | 0.357888 | 8.1:-21956846 | None:intergenic |
AAGCTTCTCTTGCTGCCAAC+TGG | 0.389694 | 8.1:-21957647 | None:intergenic |
CGTCCGGTCCTCTTTATCTT+GGG | 0.401352 | 8.1:-21956845 | None:intergenic |
TCAAATTTGTATCCACTACT+TGG | 0.404077 | 8.1:-21957456 | None:intergenic |
CTAGCCGGCTTTCCGGTTGT+TGG | 0.421178 | 8.1:+21957564 | MS.gene62866:CDS |
AGGTTCAAGCATTAACGGTT+TGG | 0.428422 | 8.1:-21957691 | None:intergenic |
GTATCCACTACTTGGGTCCA+TGG | 0.429904 | 8.1:-21957448 | None:intergenic |
GTCCATGGGTTCAAAATGTA+TGG | 0.430865 | 8.1:-21957433 | None:intergenic |
ATTATAGGTTCAAGCATTAA+CGG | 0.444891 | 8.1:-21957696 | None:intergenic |
ATCAAGCACGAATGGACCCT+TGG | 0.445699 | 8.1:-21956701 | None:intergenic |
TAAAGCTGACATGGAGAAGA+TGG | 0.456923 | 8.1:+21956774 | MS.gene62866:CDS |
TACTGAAACATCTCAGCAAT+AGG | 0.458689 | 8.1:-21958081 | None:intergenic |
TCTTGGGATAAGCGGAAAGA+AGG | 0.462771 | 8.1:-21956829 | None:intergenic |
TCAAGCACGAATGGACCCTT+GGG | 0.462799 | 8.1:-21956700 | None:intergenic |
CCTACTCAATGCAGTTTGAC+AGG | 0.466205 | 8.1:+21958142 | MS.gene62866:CDS |
GCTTTCCCTATAGTTTACTT+GGG | 0.467404 | 8.1:-21957337 | None:intergenic |
TATGTGTTCAATAAACAATC+AGG | 0.472517 | 8.1:+21957384 | MS.gene62866:CDS |
CCGCTTATCCCAAGATAAAG+AGG | 0.478110 | 8.1:+21956837 | MS.gene62866:CDS |
TCAGTATGTCGGTACACTTA+GGG | 0.480771 | 8.1:+21958098 | MS.gene62866:CDS |
TATCCACTACTTGGGTCCAT+GGG | 0.482451 | 8.1:-21957447 | None:intergenic |
ATACCTCACTTCTGTGACTT+CGG | 0.483194 | 8.1:-21957364 | None:intergenic |
TTCAGTATGTCGGTACACTT+AGG | 0.488588 | 8.1:+21958097 | MS.gene62866:CDS |
TCCATTCGTGCTTGATCAGA+TGG | 0.492171 | 8.1:+21956708 | MS.gene62866:CDS |
CGGACGATCATTCAAGGAAC+GGG | 0.494140 | 8.1:+21956862 | MS.gene62866:CDS |
GAGGACCGGACGATCATTCA+AGG | 0.514727 | 8.1:+21956856 | MS.gene62866:CDS |
TACACCAACAACCGGAAAGC+CGG | 0.518143 | 8.1:-21957568 | None:intergenic |
CCGTTCCTTGAATGATCGTC+CGG | 0.518352 | 8.1:-21956861 | None:intergenic |
TGAGACGTTGTGTGACCCCA+AGG | 0.519530 | 8.1:+21956684 | MS.gene62866:CDS |
GCAGTTTGACAGGTTTGATA+CGG | 0.520423 | 8.1:+21958152 | MS.gene62866:CDS |
GGAGATGTAATTGGTGATCT+CGG | 0.520638 | 8.1:+21957753 | MS.gene62866:CDS |
CAAATTTGTATCCACTACTT+GGG | 0.533919 | 8.1:-21957455 | None:intergenic |
ACTGCGCGTACACCAACAAC+CGG | 0.534986 | 8.1:-21957576 | None:intergenic |
ATGAGCAATGGTGTTCTAGC+CGG | 0.543808 | 8.1:+21957549 | MS.gene62866:CDS |
GCTGAGATGTTTCAGTATGT+CGG | 0.550369 | 8.1:+21958087 | MS.gene62866:CDS |
TTCCAGAAGAATTCATTACT+GGG | 0.551889 | 8.1:+21957502 | MS.gene62866:CDS |
TCCATCTGATCAAGCACGAA+TGG | 0.552084 | 8.1:-21956709 | None:intergenic |
GACATGGAGAAGATGGAAGC+TGG | 0.555973 | 8.1:+21956781 | MS.gene62866:CDS |
ATGCAGGTAGAAGCTAATGT+TGG | 0.557514 | 8.1:+21957309 | MS.gene62866:intron |
TGACAAACCGGGTGGACTCA+AGG | 0.561232 | 8.1:+21957806 | MS.gene62866:CDS |
TGACTTACCTTGAGTCCACC+CGG | 0.568953 | 8.1:-21957813 | None:intergenic |
TGGTGTACGCGCAGTACTTG+TGG | 0.572358 | 8.1:+21957584 | MS.gene62866:CDS |
CTTTCCCTATAGTTTACTTG+GGG | 0.575513 | 8.1:-21957336 | None:intergenic |
GAACCCATGGACCCAAGTAG+TGG | 0.580505 | 8.1:+21957444 | MS.gene62866:CDS |
AAATGTGAGGGTATTCCAGT+TGG | 0.582925 | 8.1:+21957632 | MS.gene62866:CDS |
CCTGTCAAACTGCATTGAGT+AGG | 0.586523 | 8.1:-21958142 | None:intergenic |
CCTCTTTATCTTGGGATAAG+CGG | 0.587821 | 8.1:-21956837 | None:intergenic |
GGTTTGAAAGATACTATAGC+CGG | 0.593470 | 8.1:+21956661 | MS.gene62866:CDS |
CTTGGGATAAGCGGAAAGAA+GGG | 0.595180 | 8.1:-21956828 | None:intergenic |
ACCCAAAACTAAAGCTGACA+TGG | 0.611458 | 8.1:+21956765 | MS.gene62866:CDS |
GGATGGTAATTACCATGATG+TGG | 0.612641 | 8.1:+21957605 | MS.gene62866:CDS |
GGGGTCACACAACGTCTCAC+CGG | 0.615808 | 8.1:-21956680 | None:intergenic |
TGGTTTAATCAAGCTTGCTG+AGG | 0.618797 | 8.1:+21956801 | MS.gene62866:CDS |
GAGACGTTGTGTGACCCCAA+GGG | 0.619509 | 8.1:+21956685 | MS.gene62866:CDS |
TCACATTTGAATCCACATCA+TGG | 0.622810 | 8.1:-21957617 | None:intergenic |
CCGGACGATCATTCAAGGAA+CGG | 0.623049 | 8.1:+21956861 | MS.gene62866:CDS |
GCACGTTTGTCAATAATCTG+AGG | 0.626574 | 8.1:-21958202 | None:intergenic |
TGGTTACATCTGCAAATTGA+CGG | 0.633657 | 8.1:-21957413 | None:intergenic |
TCCAGAAGAATTCATTACTG+GGG | 0.636103 | 8.1:+21957503 | MS.gene62866:CDS |
ACACTTAGGGTGCTAACAGA+GGG | 0.636398 | 8.1:+21958111 | MS.gene62866:CDS |
CAATCTTAATAACAGGAACA+GGG | 0.636579 | 8.1:-21956735 | None:intergenic |
TATCCCAAGATAAAGAGGAC+CGG | 0.637725 | 8.1:+21956842 | MS.gene62866:CDS |
GTGTTCAATAAACAATCAGG+TGG | 0.650549 | 8.1:+21957387 | MS.gene62866:CDS |
TTGGAAGAGTGCATGAGCAA+TGG | 0.663387 | 8.1:+21957537 | MS.gene62866:CDS |
TGATGTGGATTCAAATGTGA+GGG | 0.666011 | 8.1:+21957620 | MS.gene62866:CDS |
ACTGCATTGAGTAGGATGCA+CGG | 0.668859 | 8.1:-21958134 | None:intergenic |
TTTCCGAAGTCACAGAAGTG+AGG | 0.671983 | 8.1:+21957361 | MS.gene62866:CDS |
TACACTTAGGGTGCTAACAG+AGG | 0.673963 | 8.1:+21958110 | MS.gene62866:CDS |
GTACGCGCAGTACTTGTGGA+TGG | 0.703304 | 8.1:+21957588 | MS.gene62866:CDS |
ATGATGTGGATTCAAATGTG+AGG | 0.710458 | 8.1:+21957619 | MS.gene62866:CDS |
CAAGCACGAATGGACCCTTG+GGG | 0.723589 | 8.1:-21956699 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATCGATAATAATTTGAAAAA+TGG | - | chr8.1:21957966-21957985 | None:intergenic | 15.0% |
!! | TCAAATTTAATAAATGAACA+TGG | - | chr8.1:21957853-21957872 | None:intergenic | 15.0% |
!! | TGTTCATTTATTAAATTTGA+AGG | + | chr8.1:21957853-21957872 | MS.gene62866:intron | 15.0% |
!! | AAGGAAGTAATCATATAATA+GGG | - | chr8.1:21957182-21957201 | None:intergenic | 20.0% |
!! | ACAATTTCAACTTTCATTAT+AGG | - | chr8.1:21957714-21957733 | None:intergenic | 20.0% |
!! | ATATATATTAATGACGTATC+TGG | + | chr8.1:21957908-21957927 | MS.gene62866:intron | 20.0% |
! | AACAAATAATCATCCTTGAT+CGG | - | chr8.1:21957139-21957158 | None:intergenic | 25.0% |
! | AGGAAGTAATCATATAATAG+GGG | - | chr8.1:21957181-21957200 | None:intergenic | 25.0% |
! | ATTATAGGTTCAAGCATTAA+CGG | - | chr8.1:21957699-21957718 | None:intergenic | 25.0% |
! | CAAGGAAGTAATCATATAAT+AGG | - | chr8.1:21957183-21957202 | None:intergenic | 25.0% |
! | CCAAATCATAATAAGAAGTA+AGG | + | chr8.1:21957032-21957051 | MS.gene62866:intron | 25.0% |
! | CCTTACTTCTTATTATGATT+TGG | - | chr8.1:21957035-21957054 | None:intergenic | 25.0% |
! | TACATAAAACTGATGAAGAT+CGG | - | chr8.1:21957225-21957244 | None:intergenic | 25.0% |
! | TATGTGTTCAATAAACAATC+AGG | + | chr8.1:21957384-21957403 | MS.gene62866:CDS | 25.0% |
! | TCAATTGCAATCTTAATAAC+AGG | - | chr8.1:21956745-21956764 | None:intergenic | 25.0% |
! | TTGAATGTAACTACAAGTAT+TGG | - | chr8.1:21957937-21957956 | None:intergenic | 25.0% |
! | TTGTCTCAAAAGAGAATTTA+AGG | + | chr8.1:21956912-21956931 | MS.gene62866:CDS | 25.0% |
!! | ATTTTCTGTATCTGTTAACA+TGG | + | chr8.1:21956961-21956980 | MS.gene62866:intron | 25.0% |
!! | GAATATTGTTTTCTTCCTTT+TGG | + | chr8.1:21958025-21958044 | MS.gene62866:intron | 25.0% |
!! | TATCTAATGTTTGTTAATGC+AGG | + | chr8.1:21957293-21957312 | MS.gene62866:intron | 25.0% |
!! | TGTCACAAAAACTATTGATT+TGG | - | chr8.1:21957791-21957810 | None:intergenic | 25.0% |
AAGAAAAAGGAATCATCTCA+AGG | - | chr8.1:21957201-21957220 | None:intergenic | 30.0% | |
ATGGATATTGTTACTCTTGT+TGG | + | chr8.1:21956640-21956659 | MS.gene62866:CDS | 30.0% | |
CAAATTTGTATCCACTACTT+GGG | - | chr8.1:21957458-21957477 | None:intergenic | 30.0% | |
CAATCTTAATAACAGGAACA+GGG | - | chr8.1:21956738-21956757 | None:intergenic | 30.0% | |
CATGAAAAAAAATGCTTACG+AGG | + | chr8.1:21957076-21957095 | MS.gene62866:intron | 30.0% | |
GAACATTTAGGAGATGTAAT+TGG | + | chr8.1:21957744-21957763 | MS.gene62866:CDS | 30.0% | |
TCAAATTTGTATCCACTACT+TGG | - | chr8.1:21957459-21957478 | None:intergenic | 30.0% | |
TTCCAGAAGAATTCATTACT+GGG | + | chr8.1:21957502-21957521 | MS.gene62866:CDS | 30.0% | |
! | AATAGTTTTTGTGACAAACC+GGG | + | chr8.1:21957795-21957814 | MS.gene62866:CDS | 30.0% |
! | CAATAGTTTTTGTGACAAAC+CGG | + | chr8.1:21957794-21957813 | MS.gene62866:CDS | 30.0% |
! | TATTGTTTTCTTCCTTTTGG+TGG | + | chr8.1:21958028-21958047 | MS.gene62866:intron | 30.0% |
! | TTCATTACTGGGGTTTTTAA+AGG | + | chr8.1:21957513-21957532 | MS.gene62866:CDS | 30.0% |
! | TTTTCCCCAAGTAAACTATA+GGG | + | chr8.1:21957332-21957351 | MS.gene62866:CDS | 30.0% |
!!! | TCTTTTGAGACAATCAACAA+TGG | - | chr8.1:21956905-21956924 | None:intergenic | 30.0% |
ACATCTCCTAAATGTTCTTC+AGG | - | chr8.1:21957741-21957760 | None:intergenic | 35.0% | |
ATGATGTGGATTCAAATGTG+AGG | + | chr8.1:21957619-21957638 | MS.gene62866:CDS | 35.0% | |
CTTCCAGAAGAATTCATTAC+TGG | + | chr8.1:21957501-21957520 | MS.gene62866:CDS | 35.0% | |
CTTTCCCTATAGTTTACTTG+GGG | - | chr8.1:21957339-21957358 | None:intergenic | 35.0% | |
GACAGACATGGATTTATTCA+AGG | - | chr8.1:21957114-21957133 | None:intergenic | 35.0% | |
GATGAAGATCGGAAAGAAAA+AGG | - | chr8.1:21957214-21957233 | None:intergenic | 35.0% | |
GATTTGAAAGCTATGTAGCA+CGG | + | chr8.1:21957879-21957898 | MS.gene62866:intron | 35.0% | |
GCAATCTTAATAACAGGAAC+AGG | - | chr8.1:21956739-21956758 | None:intergenic | 35.0% | |
GCTTTCCCTATAGTTTACTT+GGG | - | chr8.1:21957340-21957359 | None:intergenic | 35.0% | |
GGTTTGAAAGATACTATAGC+CGG | + | chr8.1:21956661-21956680 | MS.gene62866:CDS | 35.0% | |
GTGTTCAATAAACAATCAGG+TGG | + | chr8.1:21957387-21957406 | MS.gene62866:CDS | 35.0% | |
GTTACTCCTGAAGAACATTT+AGG | + | chr8.1:21957732-21957751 | MS.gene62866:CDS | 35.0% | |
TACTGAAACATCTCAGCAAT+AGG | - | chr8.1:21958084-21958103 | None:intergenic | 35.0% | |
TCACATTTGAATCCACATCA+TGG | - | chr8.1:21957620-21957639 | None:intergenic | 35.0% | |
TCCAGAAGAATTCATTACTG+GGG | + | chr8.1:21957503-21957522 | MS.gene62866:CDS | 35.0% | |
TGATGTGGATTCAAATGTGA+GGG | + | chr8.1:21957620-21957639 | MS.gene62866:CDS | 35.0% | |
TGCTTTCCCTATAGTTTACT+TGG | - | chr8.1:21957341-21957360 | None:intergenic | 35.0% | |
TGGTTACATCTGCAAATTGA+CGG | - | chr8.1:21957416-21957435 | None:intergenic | 35.0% | |
! | AACCATACATTTTGAACCCA+TGG | + | chr8.1:21957431-21957450 | MS.gene62866:CDS | 35.0% |
! | GTTTTCCCCAAGTAAACTAT+AGG | + | chr8.1:21957331-21957350 | MS.gene62866:CDS | 35.0% |
!! | TACTGGGGTTTTTAAAGGAT+TGG | + | chr8.1:21957518-21957537 | MS.gene62866:CDS | 35.0% |
!!! | TCCATGTCAGCTTTAGTTTT+GGG | - | chr8.1:21956769-21956788 | None:intergenic | 35.0% |
ACCCAAAACTAAAGCTGACA+TGG | + | chr8.1:21956765-21956784 | MS.gene62866:CDS | 40.0% | |
ACCCCAGTAATGAATTCTTC+TGG | - | chr8.1:21957507-21957526 | None:intergenic | 40.0% | |
AGGTTCAAGCATTAACGGTT+TGG | - | chr8.1:21957694-21957713 | None:intergenic | 40.0% | |
ATACCTCACTTCTGTGACTT+CGG | - | chr8.1:21957367-21957386 | None:intergenic | 40.0% | |
ATGCAGGTAGAAGCTAATGT+TGG | + | chr8.1:21957309-21957328 | MS.gene62866:intron | 40.0% | |
CCTCTTTATCTTGGGATAAG+CGG | - | chr8.1:21956840-21956859 | None:intergenic | 40.0% | |
GCAGTTTGACAGGTTTGATA+CGG | + | chr8.1:21958152-21958171 | MS.gene62866:CDS | 40.0% | |
GCTGAGATGTTTCAGTATGT+CGG | + | chr8.1:21958087-21958106 | MS.gene62866:CDS | 40.0% | |
GGATGGTAATTACCATGATG+TGG | + | chr8.1:21957605-21957624 | MS.gene62866:CDS | 40.0% | |
GTCCATGGGTTCAAAATGTA+TGG | - | chr8.1:21957436-21957455 | None:intergenic | 40.0% | |
TAAAGCTGACATGGAGAAGA+TGG | + | chr8.1:21956774-21956793 | MS.gene62866:CDS | 40.0% | |
TATCCCAAGATAAAGAGGAC+CGG | + | chr8.1:21956842-21956861 | MS.gene62866:CDS | 40.0% | |
TCAGTATGTCGGTACACTTA+GGG | + | chr8.1:21958098-21958117 | MS.gene62866:CDS | 40.0% | |
TTCAGTATGTCGGTACACTT+AGG | + | chr8.1:21958097-21958116 | MS.gene62866:CDS | 40.0% | |
! | CTGTTTTCACAACCACCAAA+AGG | - | chr8.1:21958043-21958062 | None:intergenic | 40.0% |
! | GGAGATGTAATTGGTGATCT+CGG | + | chr8.1:21957753-21957772 | MS.gene62866:CDS | 40.0% |
!! | AAATGTGAGGGTATTCCAGT+TGG | + | chr8.1:21957632-21957651 | MS.gene62866:CDS | 40.0% |
!! | CTCCATGTCAGCTTTAGTTT+TGG | - | chr8.1:21956770-21956789 | None:intergenic | 40.0% |
!! | CTTTTGGTGGTTGTGAAAAC+AGG | + | chr8.1:21958041-21958060 | MS.gene62866:intron | 40.0% |
!! | TGGTTTAATCAAGCTTGCTG+AGG | + | chr8.1:21956801-21956820 | MS.gene62866:CDS | 40.0% |
ACTGCATTGAGTAGGATGCA+CGG | - | chr8.1:21958137-21958156 | None:intergenic | 45.0% | |
ATGAGCAATGGTGTTCTAGC+CGG | + | chr8.1:21957549-21957568 | MS.gene62866:CDS | 45.0% | |
CCGCTTATCCCAAGATAAAG+AGG | + | chr8.1:21956837-21956856 | MS.gene62866:CDS | 45.0% | |
CCTACTCAATGCAGTTTGAC+AGG | + | chr8.1:21958142-21958161 | MS.gene62866:CDS | 45.0% | |
CCTGTCAAACTGCATTGAGT+AGG | - | chr8.1:21958145-21958164 | None:intergenic | 45.0% | |
CTTGGGATAAGCGGAAAGAA+GGG | - | chr8.1:21956831-21956850 | None:intergenic | 45.0% | |
TATCCACTACTTGGGTCCAT+GGG | - | chr8.1:21957450-21957469 | None:intergenic | 45.0% | |
TCCATCTGATCAAGCACGAA+TGG | - | chr8.1:21956712-21956731 | None:intergenic | 45.0% | |
TCCATTCGTGCTTGATCAGA+TGG | + | chr8.1:21956708-21956727 | MS.gene62866:CDS | 45.0% | |
TCTTGGGATAAGCGGAAAGA+AGG | - | chr8.1:21956832-21956851 | None:intergenic | 45.0% | |
TTTCCGAAGTCACAGAAGTG+AGG | + | chr8.1:21957361-21957380 | MS.gene62866:CDS | 45.0% | |
! | ACACTTAGGGTGCTAACAGA+GGG | + | chr8.1:21958111-21958130 | MS.gene62866:CDS | 45.0% |
! | AGTTTTTGTGACAAACCGGG+TGG | + | chr8.1:21957798-21957817 | MS.gene62866:CDS | 45.0% |
! | GGCAGCAAGAGAAGCTTTTA+GGG | + | chr8.1:21957653-21957672 | MS.gene62866:CDS | 45.0% |
! | TACACTTAGGGTGCTAACAG+AGG | + | chr8.1:21958110-21958129 | MS.gene62866:CDS | 45.0% |
! | TGGCAGCAAGAGAAGCTTTT+AGG | + | chr8.1:21957652-21957671 | MS.gene62866:CDS | 45.0% |
! | TTGGAAGAGTGCATGAGCAA+TGG | + | chr8.1:21957537-21957556 | MS.gene62866:CDS | 45.0% |
! | TTGGTGGTTGTGAAAACAGG+TGG | + | chr8.1:21958044-21958063 | MS.gene62866:intron | 45.0% |
!! | GCAAGAGAAGCTTTTAGGGA+AGG | + | chr8.1:21957657-21957676 | MS.gene62866:CDS | 45.0% |
AAGCTTCTCTTGCTGCCAAC+TGG | - | chr8.1:21957650-21957669 | None:intergenic | 50.0% | |
ATCAAGCACGAATGGACCCT+TGG | - | chr8.1:21956704-21956723 | None:intergenic | 50.0% | |
CCATGTCTGTCATCCGATCA+AGG | + | chr8.1:21957123-21957142 | MS.gene62866:intron | 50.0% | |
CCGGACGATCATTCAAGGAA+CGG | + | chr8.1:21956861-21956880 | MS.gene62866:CDS | 50.0% | |
CCGTTCCTTGAATGATCGTC+CGG | - | chr8.1:21956864-21956883 | None:intergenic | 50.0% | |
CCTTGATCGGATGACAGACA+TGG | - | chr8.1:21957126-21957145 | None:intergenic | 50.0% | |
CGGACGATCATTCAAGGAAC+GGG | + | chr8.1:21956862-21956881 | MS.gene62866:CDS | 50.0% | |
CGTCCGGTCCTCTTTATCTT+GGG | - | chr8.1:21956848-21956867 | None:intergenic | 50.0% | |
GACATGGAGAAGATGGAAGC+TGG | + | chr8.1:21956781-21956800 | MS.gene62866:CDS | 50.0% | |
GGTGATCTCGGCAGAAAAAG+AGG | + | chr8.1:21957765-21957784 | MS.gene62866:CDS | 50.0% | |
GTATCCACTACTTGGGTCCA+TGG | - | chr8.1:21957451-21957470 | None:intergenic | 50.0% | |
TACACCAACAACCGGAAAGC+CGG | - | chr8.1:21957571-21957590 | None:intergenic | 50.0% | |
TCAAGCACGAATGGACCCTT+GGG | - | chr8.1:21956703-21956722 | None:intergenic | 50.0% | |
TCGTCCGGTCCTCTTTATCT+TGG | - | chr8.1:21956849-21956868 | None:intergenic | 50.0% | |
TGACTTACCTTGAGTCCACC+CGG | - | chr8.1:21957816-21957835 | None:intergenic | 50.0% | |
ACTGCGCGTACACCAACAAC+CGG | - | chr8.1:21957579-21957598 | None:intergenic | 55.0% | |
CAAGCACGAATGGACCCTTG+GGG | - | chr8.1:21956702-21956721 | None:intergenic | 55.0% | |
GAACCCATGGACCCAAGTAG+TGG | + | chr8.1:21957444-21957463 | MS.gene62866:CDS | 55.0% | |
GAGACGTTGTGTGACCCCAA+GGG | + | chr8.1:21956685-21956704 | MS.gene62866:CDS | 55.0% | |
GAGGACCGGACGATCATTCA+AGG | + | chr8.1:21956856-21956875 | MS.gene62866:CDS | 55.0% | |
GTACGCGCAGTACTTGTGGA+TGG | + | chr8.1:21957588-21957607 | MS.gene62866:CDS | 55.0% | |
TGAGACGTTGTGTGACCCCA+AGG | + | chr8.1:21956684-21956703 | MS.gene62866:CDS | 55.0% | |
TGGTGTACGCGCAGTACTTG+TGG | + | chr8.1:21957584-21957603 | MS.gene62866:CDS | 55.0% | |
! | TGACAAACCGGGTGGACTCA+AGG | + | chr8.1:21957806-21957825 | MS.gene62866:CDS | 55.0% |
! | TGGTGTTCTAGCCGGCTTTC+CGG | + | chr8.1:21957557-21957576 | MS.gene62866:CDS | 55.0% |
GGGGTCACACAACGTCTCAC+CGG | - | chr8.1:21956683-21956702 | None:intergenic | 60.0% | |
! | CTAGCCGGCTTTCCGGTTGT+TGG | + | chr8.1:21957564-21957583 | MS.gene62866:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 21956640 | 21958215 | 21956640 | ID=MS.gene62866 |
chr8.1 | mRNA | 21956640 | 21958215 | 21956640 | ID=MS.gene62866.t1;Parent=MS.gene62866 |
chr8.1 | exon | 21956640 | 21956933 | 21956640 | ID=MS.gene62866.t1.exon1;Parent=MS.gene62866.t1 |
chr8.1 | CDS | 21956640 | 21956933 | 21956640 | ID=cds.MS.gene62866.t1;Parent=MS.gene62866.t1 |
chr8.1 | exon | 21957315 | 21957827 | 21957315 | ID=MS.gene62866.t1.exon2;Parent=MS.gene62866.t1 |
chr8.1 | CDS | 21957315 | 21957827 | 21957315 | ID=cds.MS.gene62866.t1;Parent=MS.gene62866.t1 |
chr8.1 | exon | 21958063 | 21958215 | 21958063 | ID=MS.gene62866.t1.exon3;Parent=MS.gene62866.t1 |
chr8.1 | CDS | 21958063 | 21958215 | 21958063 | ID=cds.MS.gene62866.t1;Parent=MS.gene62866.t1 |
Gene Sequence |
Protein sequence |