AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0269790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0269790 MtrunA17_Chr1g0183021 92.176 409 23 3 1 406 64 466 0.0 738
Msa0269790 MtrunA17_Chr7g0262551 73.626 364 96 0 43 406 1 364 0.0 567
Msa0269790 MtrunA17_Chr7g0262571 62.155 399 144 2 10 405 24 418 0.0 512
Msa0269790 MtrunA17_Chr1g0183031 65.833 360 123 0 47 406 9 368 2.31e-176 496
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0269790 AT4G28706.3 67.042 355 117 0 51 405 48 402 0.0 512
Msa0269790 AT4G28706.4 67.135 356 116 1 51 405 48 403 0.0 511
Msa0269790 AT4G28706.1 67.042 355 117 0 51 405 46 400 0.0 511
Msa0269790 AT4G28706.2 67.135 356 116 1 51 405 48 403 0.0 511
Msa0269790 AT5G43910.2 54.670 364 159 3 44 405 4 363 8.25e-140 404
Msa0269790 AT5G43910.4 54.769 325 141 3 44 366 4 324 2.78e-122 357
Msa0269790 AT5G43910.5 54.745 274 122 2 44 315 4 277 2.95e-104 311
Msa0269790 AT5G43910.1 53.957 278 126 2 44 319 4 281 3.06e-104 310
Msa0269790 AT5G43910.3 54.745 274 122 2 44 315 4 277 7.34e-104 309

Find 127 sgRNAs with CRISPR-Local

Find 384 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCCACTTCACTCACTTTA+TGG 0.132342 2_3:+805878 Msa0269790:five_prime_UTR
TTACGTTGGGTAACCTTAAA+AGG 0.186047 2_3:-810038 None:intergenic
ATTTACCCTCTTAGATGTTT+TGG 0.230744 2_3:+811486 Msa0269790:three_prime_UTR
AAAATTTGTGGCTGTAACTT+TGG 0.249227 2_3:+810059 Msa0269790:CDS
ATCAGTCACCGTCGATTTCT+TGG 0.299106 2_3:+806335 Msa0269790:CDS
GGTGCCGGGGATGCATTTAT+TGG 0.310291 2_3:+810851 Msa0269790:CDS
TTGACTGAGTTGTTTATTGA+TGG 0.314095 2_3:+811446 Msa0269790:three_prime_UTR
CCAGTCAGTGGCAAAATTAA+AGG 0.324818 2_3:+810745 Msa0269790:intron
GGTGGATGTAGACAACTTAT+TGG 0.326212 2_3:+810231 Msa0269790:CDS
CAACATAATCAGCTAATTTC+AGG 0.326463 2_3:-809460 None:intergenic
TTAACCTGCCTTGCTCGTTT+AGG 0.328379 2_3:+806754 Msa0269790:CDS
AAACACAAGGCTCGTTTCTA+AGG 0.332845 2_3:+806780 Msa0269790:CDS
CCCTTGTATTGGCTCAATAC+TGG 0.333218 2_3:-811405 None:intergenic
AACTCGATTCTGAAAGATCT+TGG 0.350613 2_3:-808597 None:intergenic
AAATTTGTGGCTGTAACTTT+GGG 0.365260 2_3:+810060 Msa0269790:CDS
TTTATTGGATCTGTGATCTA+TGG 0.367712 2_3:+810866 Msa0269790:CDS
TCATCTAATATGCCCCTGCC+TGG 0.371108 2_3:-807224 None:intergenic
CTGGAAAATCTACTGAATAA+AGG 0.373453 2_3:-811386 None:intergenic
GAAGGAATAGGAACGGTTAT+CGG 0.380834 2_3:+810770 Msa0269790:CDS
ACTCGATTCTGAAAGATCTT+GGG 0.390681 2_3:-808596 None:intergenic
GAAAGATCTTGGGGTATCAT+TGG 0.390891 2_3:-808586 None:intergenic
ATCGAGTTTGTTATCTGCAT+TGG 0.395357 2_3:+808612 Msa0269790:CDS
CCTTTCTGCATCAATTAAGA+TGG 0.396655 2_3:-809414 None:intergenic
TTTCAATGAAGTTTCAATCA+TGG 0.397353 2_3:+811581 Msa0269790:three_prime_UTR
AAGAAACCAAAACATCTAAG+AGG 0.398040 2_3:-811492 None:intergenic
GGTGCCAAGTGCAGAGATCT+AGG 0.414691 2_3:+811319 Msa0269790:CDS
AAGGCAGGTTAAAGCATTGC+CGG 0.419139 2_3:-806743 None:intergenic
AATCAGAACAACCACTTTGA+AGG 0.420228 2_3:+806392 Msa0269790:CDS
CGCACAACGGTGGCGCTTTG+AGG 0.441473 2_3:-806220 None:intergenic
AGCTGAGAGCATTCCGCCCT+CGG 0.443652 2_3:+810811 Msa0269790:CDS
GGTATCATTGGAGGATATCC+AGG 0.445056 2_3:-808574 None:intergenic
AAATTAAAGGCAGAAGGAAT+AGG 0.458558 2_3:+810758 Msa0269790:CDS
GTTACCCAACGTAAAATTTG+TGG 0.460980 2_3:+810047 Msa0269790:CDS
GCAGAGATTCGACATGGTTA+CGG 0.461264 2_3:-805978 None:intergenic
AGGCGTGGGTCTGCGCGGTA+TGG 0.464792 2_3:-811358 None:intergenic
GTGCTTATGCAGGTGGGTTG+CGG 0.466739 2_3:+806312 Msa0269790:intron
CTTGTTGATACCACTGGTGC+CGG 0.467767 2_3:+810836 Msa0269790:CDS
TCCACAATAATGTACGTAAA+CGG 0.467777 2_3:-807756 None:intergenic
TCCAGTATTGAGCCAATACA+AGG 0.470329 2_3:+811404 Msa0269790:three_prime_UTR
AAGGAATAGGAACGGTTATC+GGG 0.482979 2_3:+810771 Msa0269790:CDS
TTGCATTACCGATGATATGC+AGG 0.482989 2_3:-810296 None:intergenic
ACTGAAGCCATCCCTTGTAT+TGG 0.483875 2_3:-811416 None:intergenic
GGTTGAAATGAATGAATGAA+TGG 0.484791 2_3:-805908 None:intergenic
TTGCGGATGACAGCCCAGGC+AGG 0.492500 2_3:+807210 Msa0269790:CDS
TTGTTGATACCACTGGTGCC+GGG 0.498753 2_3:+810837 Msa0269790:CDS
ATGAATGAATGAATGGTGAT+TGG 0.504020 2_3:-805901 None:intergenic
TGCGGATGACAGCCCAGGCA+GGG 0.505235 2_3:+807211 Msa0269790:CDS
TTATTTGCAGGTATCTAAAG+AGG 0.508769 2_3:+807725 Msa0269790:intron
TAGACCTAAACGAGCAAGGC+AGG 0.509005 2_3:-806758 None:intergenic
AGACAACTTATTGGAATCGC+TGG 0.516469 2_3:+810240 Msa0269790:CDS
TCGGAGCTTGTTGATACCAC+TGG 0.518281 2_3:+810830 Msa0269790:CDS
GCGGATGACAGCCCAGGCAG+GGG 0.519058 2_3:+807212 Msa0269790:CDS
CATCTAATATGCCCCTGCCT+GGG 0.522457 2_3:-807223 None:intergenic
TAGATTGCGGATGACAGCCC+AGG 0.525196 2_3:+807206 Msa0269790:intron
GCAAAGGGTAGCATTGTCTC+TGG 0.526457 2_3:-811044 None:intergenic
CATTTATGTAAGAGAGAGGA+TGG 0.529081 2_3:+811534 Msa0269790:three_prime_UTR
CTTTCTGCATCAATTAAGAT+GGG 0.529991 2_3:-809413 None:intergenic
TCATCGCAGTAGAAATTTGA+AGG 0.531166 2_3:+806174 Msa0269790:CDS
CTCGTTTAGGTCTAAACACA+AGG 0.531596 2_3:+806767 Msa0269790:CDS
TAATTGATGCAGAAAGGCCA+AGG 0.534906 2_3:+809420 Msa0269790:CDS
GTTCAAGGAGGTGGTAATGC+CGG 0.539538 2_3:+806724 Msa0269790:CDS
AGATCATCTAACCCTTCCCT+TGG 0.542681 2_3:-809437 None:intergenic
TGCTCCTAGATCTCTGCACT+TGG 0.543238 2_3:-811323 None:intergenic
AACGGTGGCGCTTTGAGGAA+CGG 0.543705 2_3:-806215 None:intergenic
CGAACTTGTATACATACCCC+TGG 0.546807 2_3:+808556 Msa0269790:CDS
TCTACTGAATAAAGGACGCT+AGG 0.547805 2_3:-811378 None:intergenic
ACATACCACATTAGCAGCAA+AGG 0.549212 2_3:-811060 None:intergenic
AGTTTGTTATCTGCATTGGA+TGG 0.549990 2_3:+808616 Msa0269790:CDS
CTCGATTCTGAAAGATCTTG+GGG 0.550007 2_3:-808595 None:intergenic
GCTGTAACTTTGGGAAAAGA+TGG 0.551573 2_3:+810069 Msa0269790:CDS
GGCGCTTTGAGGAACGGAGG+AGG 0.552389 2_3:-806209 None:intergenic
GGAATCGCTGGAGTTAAGAA+AGG 0.553449 2_3:+810252 Msa0269790:CDS
TTCACATTTATGTAAGAGAG+AGG 0.555722 2_3:+811530 Msa0269790:three_prime_UTR
ACCGTTTACGTACATTATTG+TGG 0.557011 2_3:+807755 Msa0269790:CDS
CCATCTTAATTGATGCAGAA+AGG 0.560154 2_3:+809414 Msa0269790:CDS
AGGATAGAAACAAGCGCTCG+CGG 0.560505 2_3:-810018 None:intergenic
CATACCACATTAGCAGCAAA+GGG 0.560550 2_3:-811059 None:intergenic
AATACAAGGGATGGCTTCAG+TGG 0.561337 2_3:+811418 Msa0269790:three_prime_UTR
GCTACCCTTTGCTGCTAATG+TGG 0.565502 2_3:+811055 Msa0269790:CDS
ACATCCACCTCTTCTGTGGT+AGG 0.565690 2_3:-810217 None:intergenic
AGATCCAATAAATGCATCCC+CGG 0.570608 2_3:-810855 None:intergenic
GTCTACATCCACCTCTTCTG+TGG 0.570769 2_3:-810221 None:intergenic
AGAAACCAAAACATCTAAGA+GGG 0.573537 2_3:-811491 None:intergenic
TGAATAAAGGACGCTAGGCG+TGG 0.574504 2_3:-811373 None:intergenic
GTGGCAAAATTAAAGGCAGA+AGG 0.575500 2_3:+810752 Msa0269790:CDS
TTGTTTAATTTCAGTTAACA+AGG 0.576890 2_3:+806149 Msa0269790:intron
AGATCTTGGGGTATCATTGG+AGG 0.580008 2_3:-808583 None:intergenic
TTTACGTGTATTGCTGTCGT+CGG 0.580816 2_3:+811632 Msa0269790:three_prime_UTR
ATGCAGAAAGGCCAAGGGAA+GGG 0.586552 2_3:+809426 Msa0269790:CDS
ATACAAGGGATGGCTTCAGT+GGG 0.591668 2_3:+811419 Msa0269790:three_prime_UTR
TATTGAGCCAATACAAGGGA+TGG 0.592143 2_3:+811409 Msa0269790:three_prime_UTR
AAATGCATCCCCGGCACCAG+TGG 0.595424 2_3:-810846 None:intergenic
AATTCCAACCTGCATATCAT+CGG 0.597038 2_3:+810288 Msa0269790:CDS
TGCTCTAGTTGTTGCCCACG+AGG 0.599306 2_3:+808678 Msa0269790:CDS
TTTATAGGTGATAACCTCGT+GGG 0.604370 2_3:-808692 None:intergenic
GTGGTATCAACAAGCTCCGA+GGG 0.610523 2_3:-810827 None:intergenic
TGTTTAGACCTAAACGAGCA+AGG 0.611501 2_3:-806762 None:intergenic
TATTTGCAGGTATCTAAAGA+GGG 0.612549 2_3:+807726 Msa0269790:intron
GAATAAAGGACGCTAGGCGT+GGG 0.613508 2_3:-811372 None:intergenic
ATTACCGATGATATGCAGGT+TGG 0.615097 2_3:-810292 None:intergenic
GATGCAGAAAGGCCAAGGGA+AGG 0.616991 2_3:+809425 Msa0269790:CDS
TTAGATGAGCTACAGACTGA+TGG 0.621642 2_3:+807239 Msa0269790:CDS
AGCAAGTCCTACCACAGAAG+AGG 0.623266 2_3:+810210 Msa0269790:intron
TTGCTGACAGGCATGGACAG+AGG 0.624956 2_3:+809984 Msa0269790:intron
AAGTCCTACCACAGAAGAGG+TGG 0.625523 2_3:+810213 Msa0269790:CDS
ATGCTCAGCTAAGTTTCCAA+AGG 0.628024 2_3:+809484 Msa0269790:CDS
GAGAGGGAAACGCACAACGG+TGG 0.647307 2_3:-806230 None:intergenic
AAAGGAAGCAACCTTCAAAG+TGG 0.648978 2_3:-806403 None:intergenic
GTATCATTGGAGGATATCCA+GGG 0.655895 2_3:-808573 None:intergenic
TGTTGATACCACTGGTGCCG+GGG 0.657221 2_3:+810838 Msa0269790:CDS
TGGCTTAGGATAAGCAGCAA+CGG 0.657813 2_3:-806361 None:intergenic
AAAGGCAGAAGGAATAGGAA+CGG 0.658683 2_3:+810763 Msa0269790:CDS
TGAGCTACAGACTGATGGCG+TGG 0.660123 2_3:+807244 Msa0269790:CDS
ACGCTAGGCGTGGGTCTGCG+CGG 0.665905 2_3:-811363 None:intergenic
AATTGATGCAGAAAGGCCAA+GGG 0.667892 2_3:+809421 Msa0269790:CDS
CTGCTCGAGAGAAGTGTCAG+TGG 0.668499 2_3:+810099 Msa0269790:CDS
TGGCCATAAAGTGAGTGAAG+TGG 0.672106 2_3:-805881 None:intergenic
AACGGTAGCCAAGAAATCGA+CGG 0.675256 2_3:-806343 None:intergenic
CCAGTATTGAGCCAATACAA+GGG 0.675756 2_3:+811405 Msa0269790:three_prime_UTR
AAAAGTGCAGAGATTCGACA+TGG 0.688208 2_3:-805984 None:intergenic
GTATCAACAAGCTCCGAGGG+CGG 0.694955 2_3:-810824 None:intergenic
AGTGGTATCAACAAGCTCCG+AGG 0.709683 2_3:-810828 None:intergenic
GGTGGCGCTTTGAGGAACGG+AGG 0.717893 2_3:-806212 None:intergenic
TACAAGGGATGGCTTCAGTG+GGG 0.728644 2_3:+811420 Msa0269790:three_prime_UTR
GTTATCGGGAAACTATACAT+CGG 0.739368 2_3:+810785 Msa0269790:CDS
TATCATTGGAGGATATCCAG+GGG 0.762329 2_3:-808572 None:intergenic
AGAGATCTAGGAGCACGAAG+CGG 0.771967 2_3:+811331 Msa0269790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATGTAAAATGTTTATATT+TGG + chr2_3:806503-806522 Msa0269790:intron 10.0%
!!! AATTATTTAGTTTTAATTTC+TGG + chr2_3:806842-806861 Msa0269790:intron 10.0%
!! TTAAATAAACTGAATAAAAT+AGG + chr2_3:807110-807129 Msa0269790:intron 10.0%
!!! TATTAATACTTTTTTTTTTG+TGG + chr2_3:807690-807709 Msa0269790:intron 10.0%
!! TATTAGTATTAATAAAAAGT+TGG - chr2_3:808829-808848 None:intergenic 10.0%
!!! ATCTAAAATTCAAAAAATTA+GGG - chr2_3:809861-809880 None:intergenic 10.0%
!!! TATCTAAAATTCAAAAAATT+AGG - chr2_3:809862-809881 None:intergenic 10.0%
!!! ATTTTTTTCAGTAAAAAAAA+TGG - chr2_3:809894-809913 None:intergenic 10.0%
!!! AAATTTGATTTTTGTGTTTT+GGG - chr2_3:805932-805951 None:intergenic 15.0%
!!! TAATTAATTTTAATTCTCGA+TGG - chr2_3:807635-807654 None:intergenic 15.0%
!! GAGAATTAAAATTAATTAGT+GGG + chr2_3:807637-807656 Msa0269790:intron 15.0%
!! AGAATTAAAATTAATTAGTG+GGG + chr2_3:807638-807657 Msa0269790:intron 15.0%
!! AAGTATTAATAAAATAGTAG+AGG - chr2_3:807681-807700 None:intergenic 15.0%
!! AATTCTGATGTTAATTATAA+GGG + chr2_3:808725-808744 Msa0269790:intron 15.0%
!! GTAAGAAATATATAATACTA+TGG + chr2_3:809537-809556 Msa0269790:intron 15.0%
!!! ATCTTACATAATTGATATTT+TGG - chr2_3:810549-810568 None:intergenic 15.0%
!!! TTTGTTATATTTTTCTCTTA+TGG + chr2_3:810901-810920 Msa0269790:intron 15.0%
!!! GAAATTTGATTTTTGTGTTT+TGG - chr2_3:805933-805952 None:intergenic 20.0%
!!! TTGTTTAATTTCAGTTAACA+AGG + chr2_3:806149-806168 Msa0269790:intron 20.0%
!! CATAAAAAAACCTCAAAATT+TGG - chr2_3:806271-806290 None:intergenic 20.0%
!!! ATTATGCATTTGTAATTTTC+AGG + chr2_3:806702-806721 Msa0269790:intron 20.0%
!!! ATATTTAATTGATAACCCTT+GGG - chr2_3:807557-807576 None:intergenic 20.0%
!! AATCGAAATGTAGTTAATTA+AGG + chr2_3:807586-807605 Msa0269790:intron 20.0%
!! CGAGAATTAAAATTAATTAG+TGG + chr2_3:807636-807655 Msa0269790:intron 20.0%
!! GAATTGCAAGTAAAATTTAT+AGG - chr2_3:808710-808729 None:intergenic 20.0%
!! CAATTCTGATGTTAATTATA+AGG + chr2_3:808724-808743 Msa0269790:intron 20.0%
!!! TTTGATTTCTAAATATGACT+GGG - chr2_3:808751-808770 None:intergenic 20.0%
!! ATGTTTATTTGATAAAATCC+TGG - chr2_3:808778-808797 None:intergenic 20.0%
!! ATCATGTAACAATTTCTTAT+AGG - chr2_3:809110-809129 None:intergenic 20.0%
!!! TTTTTGCATAATAAACTCAA+GGG - chr2_3:809250-809269 None:intergenic 20.0%
!!! TTATTTTCTTTTGCTTGTAA+AGG + chr2_3:809299-809318 Msa0269790:intron 20.0%
!! GTATATTAAAACATAGAGAA+TGG - chr2_3:810428-810447 None:intergenic 20.0%
!!! AAAAAGCTTATGCATTTTAA+TGG + chr2_3:811284-811303 Msa0269790:intron 20.0%
!!! AAAAGCTTATGCATTTTAAT+GGG + chr2_3:811285-811304 Msa0269790:intron 20.0%
!! GAAAGTAAAAATTATAAGCA+GGG - chr2_3:811565-811584 None:intergenic 20.0%
!! TGAAAGTAAAAATTATAAGC+AGG - chr2_3:811566-811585 None:intergenic 20.0%
! AAAAAAACCTCAAAATTTGG+CGG - chr2_3:806268-806287 None:intergenic 25.0%
!!! ATTTGTAATTTTCAGGTTCA+AGG + chr2_3:806709-806728 Msa0269790:intron 25.0%
! TTTATAAGCACTTAAACAAG+TGG - chr2_3:806906-806925 None:intergenic 25.0%
! AATATGCTGAAAACAACTTA+TGG + chr2_3:807029-807048 Msa0269790:intron 25.0%
!! TACATCTTTTATTGTGGTAA+TGG + chr2_3:807268-807287 Msa0269790:intron 25.0%
!! GAAATTTGGTTTATTGCATT+TGG + chr2_3:807340-807359 Msa0269790:intron 25.0%
! AAATTATACTTCGAATCAGT+TGG - chr2_3:807534-807553 None:intergenic 25.0%
!! CATATTTAATTGATAACCCT+TGG - chr2_3:807558-807577 None:intergenic 25.0%
!!! AATGGTCATTTTCTTACATA+TGG + chr2_3:807790-807809 Msa0269790:intron 25.0%
! TGATCTAAATTTCAAAAGAG+AGG + chr2_3:807848-807867 Msa0269790:intron 25.0%
! GATCTAAATTTCAAAAGAGA+GGG + chr2_3:807849-807868 Msa0269790:intron 25.0%
! ATCTAAATTTCAAAAGAGAG+GGG + chr2_3:807850-807869 Msa0269790:intron 25.0%
! ACTTGAATCATTCTAAGTTA+AGG + chr2_3:808125-808144 Msa0269790:intron 25.0%
! CTTGAATCATTCTAAGTTAA+GGG + chr2_3:808126-808145 Msa0269790:intron 25.0%
! TTGAATCATTCTAAGTTAAG+GGG + chr2_3:808127-808146 Msa0269790:intron 25.0%
!!! TATAAAGTGTTGTCAAACAA+AGG - chr2_3:808275-808294 None:intergenic 25.0%
! TTATACTAAATCGCATATCA+CGG + chr2_3:808290-808309 Msa0269790:intron 25.0%
! ACTCATATAGGATATATTGT+AGG - chr2_3:808441-808460 None:intergenic 25.0%
!! CTTTGATTTCTAAATATGAC+TGG - chr2_3:808752-808771 None:intergenic 25.0%
!! ATGTAATCTAAAATCCATAG+TGG + chr2_3:808963-808982 Msa0269790:intron 25.0%
! AAGAAAAAGAACGAATGTTA+GGG - chr2_3:809041-809060 None:intergenic 25.0%
! AAAGAAAAAGAACGAATGTT+AGG - chr2_3:809042-809061 None:intergenic 25.0%
! AATTCTTCACCAAAAACATA+AGG - chr2_3:809141-809160 None:intergenic 25.0%
! GTGAAGAATTTCAAAATTCT+AGG + chr2_3:809151-809170 Msa0269790:intron 25.0%
!! TTCTAGGAAATTGAAATTAC+AGG + chr2_3:809167-809186 Msa0269790:intron 25.0%
! TCTAGGAAATTGAAATTACA+GGG + chr2_3:809168-809187 Msa0269790:intron 25.0%
!!! AAGGGAATGTAATTTTTTTG+AGG - chr2_3:809232-809251 None:intergenic 25.0%
!! GTTTTTGCATAATAAACTCA+AGG - chr2_3:809251-809270 None:intergenic 25.0%
! ATATGATGTCTTAAATGACT+TGG + chr2_3:809666-809685 Msa0269790:intron 25.0%
!!! AAGAAAAGACTAGTTTTTTG+TGG + chr2_3:809694-809713 Msa0269790:intron 25.0%
!! ACAACTTAACATGTATTTTG+GGG - chr2_3:809726-809745 None:intergenic 25.0%
!! CACAACTTAACATGTATTTT+GGG - chr2_3:809727-809746 None:intergenic 25.0%
!! TCACAACTTAACATGTATTT+TGG - chr2_3:809728-809747 None:intergenic 25.0%
!! AAGCTATATTCTTTTTGTTG+TGG + chr2_3:809770-809789 Msa0269790:intron 25.0%
!!! ATTATTTTTACTCTTCTCTG+TGG + chr2_3:809912-809931 Msa0269790:intron 25.0%
!!! TTATTTTTACTCTTCTCTGT+GGG + chr2_3:809913-809932 Msa0269790:intron 25.0%
!! TTTAATCATTTGACCTTTTC+TGG + chr2_3:810186-810205 Msa0269790:intron 25.0%
! CATCATTATACACTAACATA+TGG - chr2_3:811131-811150 None:intergenic 25.0%
! AATTTATGTATTGAACCTGT+TGG + chr2_3:811241-811260 Msa0269790:intron 25.0%
!!! AAAGCTTATGCATTTTAATG+GGG + chr2_3:811286-811305 Msa0269790:intron 25.0%
! TTTCAATGAAGTTTCAATCA+TGG + chr2_3:811581-811600 Msa0269790:three_prime_UTR 25.0%
ATGAATGAATGAATGGTGAT+TGG - chr2_3:805904-805923 None:intergenic 30.0%
GGTTGAAATGAATGAATGAA+TGG - chr2_3:805911-805930 None:intergenic 30.0%
AAAAAACCTCAAAATTTGGC+GGG - chr2_3:806267-806286 None:intergenic 30.0%
! GTTGTTCTGATTTTATCATC+TGG - chr2_3:806384-806403 None:intergenic 30.0%
AAGCTAGTATAGTGCATATT+TGG + chr2_3:806444-806463 Msa0269790:intron 30.0%
TTAAATAAGCAATGTCGAGA+GGG - chr2_3:806824-806843 None:intergenic 30.0%
ATTAAATAAGCAATGTCGAG+AGG - chr2_3:806825-806844 None:intergenic 30.0%
!! CTGGAAGTATTTAACAGTTT+AGG + chr2_3:806861-806880 Msa0269790:intron 30.0%
CACTTAAACAAGTGGTTTAT+CGG - chr2_3:806898-806917 None:intergenic 30.0%
! ACTCTTTTCATAGACTATTG+TGG + chr2_3:806993-807012 Msa0269790:intron 30.0%
ACAATGGTTTCAAAAAACTC+AGG - chr2_3:807150-807169 None:intergenic 30.0%
! GTGCATTTTACTAATGTGTT+TGG + chr2_3:807176-807195 Msa0269790:intron 30.0%
TCTTCATGAAGCTTGAAATT+TGG + chr2_3:807326-807345 Msa0269790:intron 30.0%
TATTGTTGCCCATAACTAAA+AGG - chr2_3:807399-807418 None:intergenic 30.0%
AAAATACTGAGATTTGAGAG+TGG - chr2_3:807497-807516 None:intergenic 30.0%
ATTCGAAGTATAATTTCCCA+AGG + chr2_3:807538-807557 Msa0269790:intron 30.0%
TTCGAAGTATAATTTCCCAA+GGG + chr2_3:807539-807558 Msa0269790:intron 30.0%
! TAACTACATTTCGATTTGTC+TGG - chr2_3:807582-807601 None:intergenic 30.0%
AAAATTAATTAGTGGGGTTC+TGG + chr2_3:807644-807663 Msa0269790:intron 30.0%
AATAAAATAGTAGAGGCCAT+TGG - chr2_3:807674-807693 None:intergenic 30.0%
TTAGATACCTGCAAATAACA+GGG - chr2_3:807723-807742 None:intergenic 30.0%
TTTAGATACCTGCAAATAAC+AGG - chr2_3:807724-807743 None:intergenic 30.0%
TTATTTGCAGGTATCTAAAG+AGG + chr2_3:807725-807744 Msa0269790:intron 30.0%
TATTTGCAGGTATCTAAAGA+GGG + chr2_3:807726-807745 Msa0269790:intron 30.0%
TCCACAATAATGTACGTAAA+CGG - chr2_3:807759-807778 None:intergenic 30.0%
TCTAAATTTCAAAAGAGAGG+GGG + chr2_3:807851-807870 Msa0269790:intron 30.0%
TAATTCAGTGTTGTCAATTG+TGG + chr2_3:808187-808206 Msa0269790:intron 30.0%
AGTAGTTAGAATGAGTCAAA+GGG - chr2_3:808522-808541 None:intergenic 30.0%
AAGTAGTTAGAATGAGTCAA+AGG - chr2_3:808523-808542 None:intergenic 30.0%
!!! CTCATTCTAACTACTTTTTC+AGG + chr2_3:808527-808546 Msa0269790:intron 30.0%
!! GCAAGCATTGTATATTTTGA+CGG + chr2_3:808640-808659 Msa0269790:CDS 30.0%
!!! CAAGCATTGTATATTTTGAC+GGG + chr2_3:808641-808660 Msa0269790:CDS 30.0%
! ATTTAGAAATCAAAGCATCC+AGG + chr2_3:808757-808776 Msa0269790:intron 30.0%
AATGCACTTAGCATACATAA+TGG - chr2_3:809067-809086 None:intergenic 30.0%
AAATGATTCATAAAACACCC+TGG - chr2_3:809201-809220 None:intergenic 30.0%
! TTTTCTTTTGCTTGTAAAGG+AGG + chr2_3:809302-809321 Msa0269790:intron 30.0%
CTTTCTGCATCAATTAAGAT+GGG - chr2_3:809416-809435 None:intergenic 30.0%
CAACATAATCAGCTAATTTC+AGG - chr2_3:809463-809482 None:intergenic 30.0%
AAAAACAATGCATTCACCTT+TGG - chr2_3:809503-809522 None:intergenic 30.0%
CATTTATGCACATGTAAACA+AGG - chr2_3:809573-809592 None:intergenic 30.0%
TAAATAGTACATTTACTGCC+TGG - chr2_3:809635-809654 None:intergenic 30.0%
! ACATATCGTTTTACCTTTTC+TGG + chr2_3:809832-809851 Msa0269790:intron 30.0%
!! TATTTTTACTCTTCTCTGTG+GGG + chr2_3:809914-809933 Msa0269790:intron 30.0%
!! TGCATTTGATGATGCTTAAA+AGG - chr2_3:809947-809966 None:intergenic 30.0%
AAAATTTGTGGCTGTAACTT+TGG + chr2_3:810059-810078 Msa0269790:CDS 30.0%
AAATTTGTGGCTGTAACTTT+GGG + chr2_3:810060-810079 Msa0269790:CDS 30.0%
GTATGTGTAGATATGATTGT+GGG + chr2_3:810121-810140 Msa0269790:intron 30.0%
!! CATCTGCTTTTAATGTAAAC+AGG + chr2_3:810162-810181 Msa0269790:intron 30.0%
TTAAAACATAGAGAATGGCA+GGG - chr2_3:810423-810442 None:intergenic 30.0%
ATTAAAACATAGAGAATGGC+AGG - chr2_3:810424-810443 None:intergenic 30.0%
!!! CTACAATGTTTGACCTTTTT+TGG + chr2_3:810465-810484 Msa0269790:intron 30.0%
ACACTGTATTTGTCCAAAAA+AGG - chr2_3:810481-810500 None:intergenic 30.0%
ATTAACGTCTAGTAGAGATT+AGG - chr2_3:810508-810527 None:intergenic 30.0%
!!! CATAATTGATATTTTGGCTC+AGG - chr2_3:810543-810562 None:intergenic 30.0%
AAATTAAAGGCAGAAGGAAT+AGG + chr2_3:810758-810777 Msa0269790:CDS 30.0%
TTTCTCTTATGGTCTTCAAT+AGG + chr2_3:810912-810931 Msa0269790:intron 30.0%
! ATAAGTTTGTTTGAGGTTAG+AGG - chr2_3:811169-811188 None:intergenic 30.0%
CTATACACACGATACAAATT+AGG - chr2_3:811211-811230 None:intergenic 30.0%
CTGGAAAATCTACTGAATAA+AGG - chr2_3:811389-811408 None:intergenic 30.0%
TTGACTGAGTTGTTTATTGA+TGG + chr2_3:811446-811465 Msa0269790:three_prime_UTR 30.0%
! ATTTACCCTCTTAGATGTTT+TGG + chr2_3:811486-811505 Msa0269790:three_prime_UTR 30.0%
AGAAACCAAAACATCTAAGA+GGG - chr2_3:811494-811513 None:intergenic 30.0%
AAGAAACCAAAACATCTAAG+AGG - chr2_3:811495-811514 None:intergenic 30.0%
TTCACATTTATGTAAGAGAG+AGG + chr2_3:811530-811549 Msa0269790:three_prime_UTR 30.0%
TCATCGCAGTAGAAATTTGA+AGG + chr2_3:806174-806193 Msa0269790:CDS 35.0%
!! CTGATTTTATCATCTGGCTT+AGG - chr2_3:806378-806397 None:intergenic 35.0%
AATCAGAACAACCACTTTGA+AGG + chr2_3:806392-806411 Msa0269790:CDS 35.0%
!! AAGCCACTCTTTAAAGCATT+TGG - chr2_3:806680-806699 None:intergenic 35.0%
!!! TGTAATTTTCAGGTTCAAGG+AGG + chr2_3:806712-806731 Msa0269790:intron 35.0%
! TCAAAAAACTCAGGCTTGTT+TGG - chr2_3:807141-807160 None:intergenic 35.0%
TAAAATGCACGCATACACAA+TGG - chr2_3:807166-807185 None:intergenic 35.0%
GTTTGGTACTCATTAGATTG+CGG + chr2_3:807193-807212 Msa0269790:intron 35.0%
! CGTGGATACATCTTTTATTG+TGG + chr2_3:807262-807281 Msa0269790:CDS 35.0%
!! TTGCTCATGCCTTTTAGTTA+TGG + chr2_3:807387-807406 Msa0269790:intron 35.0%
!! TGCTCATGCCTTTTAGTTAT+GGG + chr2_3:807388-807407 Msa0269790:intron 35.0%
TATACTTCGAATCAGTTGGT+GGG - chr2_3:807530-807549 None:intergenic 35.0%
TTATACTTCGAATCAGTTGG+TGG - chr2_3:807531-807550 None:intergenic 35.0%
ACCGTTTACGTACATTATTG+TGG + chr2_3:807755-807774 Msa0269790:CDS 35.0%
TTGTGGACAATGAAACGTAA+TGG + chr2_3:807772-807791 Msa0269790:intron 35.0%
TACTATCTTGACTTCTTCTC+TGG + chr2_3:807816-807835 Msa0269790:intron 35.0%
TGTGCAAAGATGATAAAGAC+AGG - chr2_3:807935-807954 None:intergenic 35.0%
AATGCGATGCATAAATTGGA+AGG + chr2_3:807987-808006 Msa0269790:intron 35.0%
TGAAGATCTTCAAGCATTTC+TGG + chr2_3:808073-808092 Msa0269790:intron 35.0%
ACATCAGTGTTGTCAAATAG+TGG - chr2_3:808363-808382 None:intergenic 35.0%
!! GAGACTAATTGTTCAAGTTG+TGG + chr2_3:808389-808408 Msa0269790:intron 35.0%
AAGAAGGGTCATACTCATAT+AGG - chr2_3:808453-808472 None:intergenic 35.0%
! ACTCGATTCTGAAAGATCTT+GGG - chr2_3:808599-808618 None:intergenic 35.0%
! AACTCGATTCTGAAAGATCT+TGG - chr2_3:808600-808619 None:intergenic 35.0%
!! ATCGAGTTTGTTATCTGCAT+TGG + chr2_3:808612-808631 Msa0269790:CDS 35.0%
!! AGTTTGTTATCTGCATTGGA+TGG + chr2_3:808616-808635 Msa0269790:CDS 35.0%
TTTATAGGTGATAACCTCGT+GGG - chr2_3:808695-808714 None:intergenic 35.0%
ATTTATAGGTGATAACCTCG+TGG - chr2_3:808696-808715 None:intergenic 35.0%
ACTATCTCATGTTCAACCAT+TGG - chr2_3:808890-808909 None:intergenic 35.0%
TCACACTTTATCGTCTAAGT+TGG - chr2_3:808921-808940 None:intergenic 35.0%
GGGTGAAAAAAAGAAACAAC+AGG - chr2_3:809021-809040 None:intergenic 35.0%
! TTTCGCTTGCCTTATGTTTT+TGG + chr2_3:809129-809148 Msa0269790:intron 35.0%
! TTTTGCTTGTAAAGGAGGTT+GGG + chr2_3:809307-809326 Msa0269790:intron 35.0%
GGGAAAATAAAAGAGCTTCA+CGG + chr2_3:809335-809354 Msa0269790:intron 35.0%
AAAATAAAAGAGCTTCACGG+AGG + chr2_3:809338-809357 Msa0269790:intron 35.0%
AAATAAAAGAGCTTCACGGA+GGG + chr2_3:809339-809358 Msa0269790:intron 35.0%
! ATCTTGTATTTTTCCAGTGC+AGG + chr2_3:809373-809392 Msa0269790:intron 35.0%
CCTTTCTGCATCAATTAAGA+TGG - chr2_3:809417-809436 None:intergenic 35.0%
CCATCTTAATTGATGCAGAA+AGG + chr2_3:809414-809433 Msa0269790:CDS 35.0%
!!! ACTTTTTGTTTCTATACGCC+AGG + chr2_3:809614-809633 Msa0269790:intron 35.0%
!!! TAACATGTATTTTGGGGCAA+GGG - chr2_3:809720-809739 None:intergenic 35.0%
!!! TTAACATGTATTTTGGGGCA+AGG - chr2_3:809721-809740 None:intergenic 35.0%
TTTATGACTGCTGAAACCAA+TGG + chr2_3:809808-809827 Msa0269790:intron 35.0%
GGTAAAACGATATGTACCAT+TGG - chr2_3:809827-809846 None:intergenic 35.0%
AAAATTAGGGCAACCAGAAA+AGG - chr2_3:809848-809867 None:intergenic 35.0%
!!! CGCTTGTTTCTATCCTTTTA+AGG + chr2_3:810025-810044 Msa0269790:CDS 35.0%
TTACGTTGGGTAACCTTAAA+AGG - chr2_3:810041-810060 None:intergenic 35.0%
GTTACCCAACGTAAAATTTG+TGG + chr2_3:810047-810066 Msa0269790:CDS 35.0%
! ACAGCCACAAATTTTACGTT+GGG - chr2_3:810054-810073 None:intergenic 35.0%
! TACAGCCACAAATTTTACGT+TGG - chr2_3:810055-810074 None:intergenic 35.0%
GGTATGTGTAGATATGATTG+TGG + chr2_3:810120-810139 Msa0269790:intron 35.0%
AATTCCAACCTGCATATCAT+CGG + chr2_3:810288-810307 Msa0269790:CDS 35.0%
CTGCTTGTAGACCATAAAAA+TGG - chr2_3:810386-810405 None:intergenic 35.0%
!! CTTTAATTTTGCCACTGACT+GGG - chr2_3:810747-810766 None:intergenic 35.0%
GTTATCGGGAAACTATACAT+CGG + chr2_3:810785-810804 Msa0269790:CDS 35.0%
CTGCTAATGTGGTATGTTAA+TGG + chr2_3:811066-811085 Msa0269790:intron 35.0%
! TGCTTGGATAAGTTTGTTTG+AGG - chr2_3:811176-811195 None:intergenic 35.0%
! TAGGATACATTTGAAGTGCT+TGG - chr2_3:811192-811211 None:intergenic 35.0%
!! TGCATTTTAATGGGGATTTC+AGG + chr2_3:811294-811313 Msa0269790:intron 35.0%
CATTTATGTAAGAGAGAGGA+TGG + chr2_3:811534-811553 Msa0269790:three_prime_UTR 35.0%
GATCCACTTCACTCACTTTA+TGG + chr2_3:805878-805897 Msa0269790:five_prime_UTR 40.0%
! AAAAGTGCAGAGATTCGACA+TGG - chr2_3:805987-806006 None:intergenic 40.0%
! TTCATTCCCGCCAAATTTTG+AGG + chr2_3:806258-806277 Msa0269790:intron 40.0%
AAAGGAAGCAACCTTCAAAG+TGG - chr2_3:806406-806425 None:intergenic 40.0%
!! CATTGATTCTACTTGACGCT+AGG - chr2_3:806589-806608 None:intergenic 40.0%
GCTGCTAGAATTGATTATGG+AGG - chr2_3:806656-806675 None:intergenic 40.0%
GGAGCTGCTAGAATTGATTA+TGG - chr2_3:806659-806678 None:intergenic 40.0%
!! GCTCCAAATGCTTTAAAGAG+TGG + chr2_3:806674-806693 Msa0269790:intron 40.0%
!!! AATTTTCAGGTTCAAGGAGG+TGG + chr2_3:806715-806734 Msa0269790:intron 40.0%
TGTTTAGACCTAAACGAGCA+AGG - chr2_3:806765-806784 None:intergenic 40.0%
CTCGTTTAGGTCTAAACACA+AGG + chr2_3:806767-806786 Msa0269790:CDS 40.0%
AAACACAAGGCTCGTTTCTA+AGG + chr2_3:806780-806799 Msa0269790:CDS 40.0%
! TTAACAGTTTAGGCGCTGTT+TGG + chr2_3:806871-806890 Msa0269790:intron 40.0%
! AGATACCTGTGAGACTGTTT+TGG - chr2_3:807084-807103 None:intergenic 40.0%
TTAGATGAGCTACAGACTGA+TGG + chr2_3:807239-807258 Msa0269790:CDS 40.0%
CAAGAAATCAGGTACAGACT+TGG - chr2_3:807469-807488 None:intergenic 40.0%
! ATACTTCGAATCAGTTGGTG+GGG - chr2_3:807529-807548 None:intergenic 40.0%
! TTATGCTCCCTGTTATTTGC+AGG + chr2_3:807713-807732 Msa0269790:intron 40.0%
AAATTTCAAAAGAGAGGGGG+AGG + chr2_3:807854-807873 Msa0269790:intron 40.0%
AATTTCAAAAGAGAGGGGGA+GGG + chr2_3:807855-807874 Msa0269790:intron 40.0%
CAATTTATGCATCGCATTGC+TGG - chr2_3:807985-808004 None:intergenic 40.0%
CAGCAATGCGATGCATAAAT+TGG + chr2_3:807983-808002 Msa0269790:intron 40.0%
TTGTGGATCGCAAGAAATAG+CGG + chr2_3:808204-808223 Msa0269790:intron 40.0%
AATAGCCTCTTGCAATTGCA+AGG + chr2_3:808412-808431 Msa0269790:intron 40.0%
CCATGGCAGGATATAAAGAA+GGG - chr2_3:808468-808487 None:intergenic 40.0%
GATCCATACTTTATAGCACC+AGG + chr2_3:808493-808512 Msa0269790:intron 40.0%
!! CAACCTGGTGCTATAAAGTA+TGG - chr2_3:808499-808518 None:intergenic 40.0%
TATCATTGGAGGATATCCAG+GGG - chr2_3:808575-808594 None:intergenic 40.0%
GTATCATTGGAGGATATCCA+GGG - chr2_3:808576-808595 None:intergenic 40.0%
! GAAAGATCTTGGGGTATCAT+TGG - chr2_3:808589-808608 None:intergenic 40.0%
! CTCGATTCTGAAAGATCTTG+GGG - chr2_3:808598-808617 None:intergenic 40.0%
CATGTTCAACCATTGGCATT+GGG - chr2_3:808883-808902 None:intergenic 40.0%
TCATGTTCAACCATTGGCAT+TGG - chr2_3:808884-808903 None:intergenic 40.0%
TGCACTTGCAATATCCACTA+TGG - chr2_3:808980-808999 None:intergenic 40.0%
! AAATTACAGGGTATCCAACC+AGG + chr2_3:809180-809199 Msa0269790:intron 40.0%
! AATTACAGGGTATCCAACCA+GGG + chr2_3:809181-809200 Msa0269790:intron 40.0%
GATTCATAAAACACCCTGGT+TGG - chr2_3:809197-809216 None:intergenic 40.0%
! CTTTTGCTTGTAAAGGAGGT+TGG + chr2_3:809306-809325 Msa0269790:intron 40.0%
TAATTGATGCAGAAAGGCCA+AGG + chr2_3:809420-809439 Msa0269790:CDS 40.0%
AATTGATGCAGAAAGGCCAA+GGG + chr2_3:809421-809440 Msa0269790:CDS 40.0%
ATGCTCAGCTAAGTTTCCAA+AGG + chr2_3:809484-809503 Msa0269790:CDS 40.0%
GATAACCTTTCTTTGCTGAC+AGG + chr2_3:809972-809991 Msa0269790:intron 40.0%
! GCTGTAACTTTGGGAAAAGA+TGG + chr2_3:810069-810088 Msa0269790:CDS 40.0%
GGTGGATGTAGACAACTTAT+TGG + chr2_3:810231-810250 Msa0269790:CDS 40.0%
AGACAACTTATTGGAATCGC+TGG + chr2_3:810240-810259 Msa0269790:CDS 40.0%
ATTACCGATGATATGCAGGT+TGG - chr2_3:810295-810314 None:intergenic 40.0%
TTGCATTACCGATGATATGC+AGG - chr2_3:810299-810318 None:intergenic 40.0%
CTTGGCAGAAAGATTTGGAA+TGG - chr2_3:810362-810381 None:intergenic 40.0%
CATTCCAAATCTTTCTGCCA+AGG + chr2_3:810360-810379 Msa0269790:intron 40.0%
!!! TTCTGCCAAGGCCATTTTTA+TGG + chr2_3:810372-810391 Msa0269790:intron 40.0%
GTAGACCATAAAAATGGCCT+TGG - chr2_3:810380-810399 None:intergenic 40.0%
! TACGTGTCACTATGAATGTC+TGG - chr2_3:810611-810630 None:intergenic 40.0%
!! ATCCCTGAAGTTCTAGAAAC+AGG + chr2_3:810644-810663 Msa0269790:intron 40.0%
!! TCCCTGAAGTTCTAGAAACA+GGG + chr2_3:810645-810664 Msa0269790:intron 40.0%
!! TCCCTGTTTCTAGAACTTCA+GGG - chr2_3:810649-810668 None:intergenic 40.0%
!! ATCCCTGTTTCTAGAACTTC+AGG - chr2_3:810650-810669 None:intergenic 40.0%
!! CCTTTAATTTTGCCACTGAC+TGG - chr2_3:810748-810767 None:intergenic 40.0%
CCAGTCAGTGGCAAAATTAA+AGG + chr2_3:810745-810764 Msa0269790:intron 40.0%
GTGGCAAAATTAAAGGCAGA+AGG + chr2_3:810752-810771 Msa0269790:CDS 40.0%
AAAGGCAGAAGGAATAGGAA+CGG + chr2_3:810763-810782 Msa0269790:CDS 40.0%
GAAGGAATAGGAACGGTTAT+CGG + chr2_3:810770-810789 Msa0269790:CDS 40.0%
AAGGAATAGGAACGGTTATC+GGG + chr2_3:810771-810790 Msa0269790:CDS 40.0%
TTGCGAAAGACACAAATTGG+TGG - chr2_3:810938-810957 None:intergenic 40.0%
CCTTTGCGAAAGACACAAAT+TGG - chr2_3:810941-810960 None:intergenic 40.0%
CCAATTTGTGTCTTTCGCAA+AGG + chr2_3:810938-810957 Msa0269790:intron 40.0%
CATACCACATTAGCAGCAAA+GGG - chr2_3:811062-811081 None:intergenic 40.0%
ACATACCACATTAGCAGCAA+AGG - chr2_3:811063-811082 None:intergenic 40.0%
ACCTGTTGGAGATATGAGTT+AGG + chr2_3:811255-811274 Msa0269790:intron 40.0%
ACCTAACTCATATCTCCAAC+AGG - chr2_3:811259-811278 None:intergenic 40.0%
! TTTTAATGGGGATTTCAGGC+AGG + chr2_3:811298-811317 Msa0269790:intron 40.0%
TCTACTGAATAAAGGACGCT+AGG - chr2_3:811381-811400 None:intergenic 40.0%
! TCCAGTATTGAGCCAATACA+AGG + chr2_3:811404-811423 Msa0269790:three_prime_UTR 40.0%
! CCAGTATTGAGCCAATACAA+GGG + chr2_3:811405-811424 Msa0269790:three_prime_UTR 40.0%
TATTGAGCCAATACAAGGGA+TGG + chr2_3:811409-811428 Msa0269790:three_prime_UTR 40.0%
TTTACGTGTATTGCTGTCGT+CGG + chr2_3:811632-811651 Msa0269790:three_prime_UTR 40.0%
TGGCCATAAAGTGAGTGAAG+TGG - chr2_3:805884-805903 None:intergenic 45.0%
GCAGAGATTCGACATGGTTA+CGG - chr2_3:805981-806000 None:intergenic 45.0%
AAAGAGAGGGAAACGCACAA+CGG - chr2_3:806236-806255 None:intergenic 45.0%
GCGGGAATGAAAGAAAGAGA+GGG - chr2_3:806249-806268 None:intergenic 45.0%
!! ATCAGTCACCGTCGATTTCT+TGG + chr2_3:806335-806354 Msa0269790:CDS 45.0%
AACGGTAGCCAAGAAATCGA+CGG - chr2_3:806346-806365 None:intergenic 45.0%
TGGCTTAGGATAAGCAGCAA+CGG - chr2_3:806364-806383 None:intergenic 45.0%
GCGTCAAGTAGAATCAATGC+TGG + chr2_3:806590-806609 Msa0269790:intron 45.0%
!! AAGGCAGGTTAAAGCATTGC+CGG - chr2_3:806746-806765 None:intergenic 45.0%
TTAACCTGCCTTGCTCGTTT+AGG + chr2_3:806754-806773 Msa0269790:CDS 45.0%
GAGAAATCAGCTGCAGACTA+GGG - chr2_3:807447-807466 None:intergenic 45.0%
GAGTGGATGTGCAAGAAATC+AGG - chr2_3:807480-807499 None:intergenic 45.0%
ATTTCAAAAGAGAGGGGGAG+GGG + chr2_3:807856-807875 Msa0269790:intron 45.0%
GAGTTAGGTGGATCTAGTTG+AGG + chr2_3:807886-807905 Msa0269790:intron 45.0%
CAACTCTGCGAGTTATGCTA+AGG - chr2_3:808155-808174 None:intergenic 45.0%
TATGCTGTAGTGCTAGAGTG+CGG + chr2_3:808243-808262 Msa0269790:intron 45.0%
GCTATAGTGCTATAGAGTGG+CGG - chr2_3:808339-808358 None:intergenic 45.0%
! GGTGCTATAGTGCTATAGAG+TGG - chr2_3:808342-808361 None:intergenic 45.0%
CCCTTCTTTATATCCTGCCA+TGG + chr2_3:808465-808484 Msa0269790:intron 45.0%
GCCATGGCAGGATATAAAGA+AGG - chr2_3:808469-808488 None:intergenic 45.0%
TCTTTATATCCTGCCATGGC+AGG + chr2_3:808469-808488 Msa0269790:intron 45.0%
AAAGTATGGATCTCCTGCCA+TGG - chr2_3:808485-808504 None:intergenic 45.0%
CGAACTTGTATACATACCCC+TGG + chr2_3:808556-808575 Msa0269790:CDS 45.0%
GGTATCATTGGAGGATATCC+AGG - chr2_3:808577-808596 None:intergenic 45.0%
! AGATCTTGGGGTATCATTGG+AGG - chr2_3:808586-808605 None:intergenic 45.0%
TTGTAAAGGAGGTTGGGAGT+GGG + chr2_3:809313-809332 Msa0269790:intron 45.0%
AGATCATCTAACCCTTCCCT+TGG - chr2_3:809440-809459 None:intergenic 45.0%
GGAATCGCTGGAGTTAAGAA+AGG + chr2_3:810252-810271 Msa0269790:CDS 45.0%
! ATGGCCTTGGCAGAAAGATT+TGG - chr2_3:810367-810386 None:intergenic 45.0%
GTGACACGTACTGAATGACT+TGG + chr2_3:810621-810640 Msa0269790:intron 45.0%
!! CCCTTGTATTGGCTCAATAC+TGG - chr2_3:811408-811427 None:intergenic 45.0%
ACTGAAGCCATCCCTTGTAT+TGG - chr2_3:811419-811438 None:intergenic 45.0%
AATACAAGGGATGGCTTCAG+TGG + chr2_3:811418-811437 Msa0269790:three_prime_UTR 45.0%
ATACAAGGGATGGCTTCAGT+GGG + chr2_3:811419-811438 Msa0269790:three_prime_UTR 45.0%
!! AAAACTATTTAAAAAAAAAA+AGG - chr2_3:806424-806443 None:intergenic 5.0%
GGCGGGAATGAAAGAAAGAG+AGG - chr2_3:806250-806269 None:intergenic 50.0%
ATACACGCACGTGCTTATGC+AGG + chr2_3:806302-806321 Msa0269790:intron 50.0%
! GTTCAAGGAGGTGGTAATGC+CGG + chr2_3:806724-806743 Msa0269790:CDS 50.0%
TAGACCTAAACGAGCAAGGC+AGG - chr2_3:806761-806780 None:intergenic 50.0%
GCTCTCCAAAACAGTCTCAC+AGG + chr2_3:807076-807095 Msa0269790:intron 50.0%
CATCTAATATGCCCCTGCCT+GGG - chr2_3:807226-807245 None:intergenic 50.0%
TCATCTAATATGCCCCTGCC+TGG - chr2_3:807227-807246 None:intergenic 50.0%
GGAGAAATCAGCTGCAGACT+AGG - chr2_3:807448-807467 None:intergenic 50.0%
TTTCAAAAGAGAGGGGGAGG+GGG + chr2_3:807857-807876 Msa0269790:intron 50.0%
GGAAGCCTTGCAATTGCAAG+AGG - chr2_3:808420-808439 None:intergenic 50.0%
GAATGAGTCAAAGGGCAACC+TGG - chr2_3:808514-808533 None:intergenic 50.0%
! TTGGCATTGGGATGATGAGC+TGG - chr2_3:808871-808890 None:intergenic 50.0%
GCTCATCATCCCAATGCCAA+TGG + chr2_3:808871-808890 Msa0269790:intron 50.0%
CTTGTAAAGGAGGTTGGGAG+TGG + chr2_3:809312-809331 Msa0269790:intron 50.0%
TGTAAAGGAGGTTGGGAGTG+GGG + chr2_3:809314-809333 Msa0269790:intron 50.0%
! TTTTTCCAGTGCAGGCAGCT+AGG + chr2_3:809381-809400 Msa0269790:intron 50.0%
ATGCAGAAAGGCCAAGGGAA+GGG + chr2_3:809426-809445 Msa0269790:CDS 50.0%
CCATGCCTGTCAGCAAAGAA+AGG - chr2_3:809980-809999 None:intergenic 50.0%
CCTTTCTTTGCTGACAGGCA+TGG + chr2_3:809977-809996 Msa0269790:intron 50.0%
AGGATAGAAACAAGCGCTCG+CGG - chr2_3:810021-810040 None:intergenic 50.0%
!! GTAGGACTTGCTGCCAGAAA+AGG - chr2_3:810202-810221 None:intergenic 50.0%
AGCAAGTCCTACCACAGAAG+AGG + chr2_3:810210-810229 Msa0269790:intron 50.0%
AAGTCCTACCACAGAAGAGG+TGG + chr2_3:810213-810232 Msa0269790:CDS 50.0%
ACATCCACCTCTTCTGTGGT+AGG - chr2_3:810220-810239 None:intergenic 50.0%
GTCTACATCCACCTCTTCTG+TGG - chr2_3:810224-810243 None:intergenic 50.0%
TGTAGACTTGTAGCGCGAAC+TGG - chr2_3:810450-810469 None:intergenic 50.0%
GTGGTATCAACAAGCTCCGA+GGG - chr2_3:810830-810849 None:intergenic 50.0%
AGTGGTATCAACAAGCTCCG+AGG - chr2_3:810831-810850 None:intergenic 50.0%
!! TCGGAGCTTGTTGATACCAC+TGG + chr2_3:810830-810849 Msa0269790:CDS 50.0%
CTTGTTGATACCACTGGTGC+CGG + chr2_3:810836-810855 Msa0269790:CDS 50.0%
TTGTTGATACCACTGGTGCC+GGG + chr2_3:810837-810856 Msa0269790:CDS 50.0%
GCAAAGGGTAGCATTGTCTC+TGG - chr2_3:811047-811066 None:intergenic 50.0%
GCTACCCTTTGCTGCTAATG+TGG + chr2_3:811055-811074 Msa0269790:CDS 50.0%
TGCTCCTAGATCTCTGCACT+TGG - chr2_3:811326-811345 None:intergenic 50.0%
! AGAGATCTAGGAGCACGAAG+CGG + chr2_3:811331-811350 Msa0269790:CDS 50.0%
GAATAAAGGACGCTAGGCGT+GGG - chr2_3:811375-811394 None:intergenic 50.0%
TGAATAAAGGACGCTAGGCG+TGG - chr2_3:811376-811395 None:intergenic 50.0%
TACAAGGGATGGCTTCAGTG+GGG + chr2_3:811420-811439 Msa0269790:three_prime_UTR 50.0%
!! AACGGTGGCGCTTTGAGGAA+CGG - chr2_3:806218-806237 None:intergenic 55.0%
ACGCACGTGCTTATGCAGGT+GGG + chr2_3:806306-806325 Msa0269790:intron 55.0%
!! GTGCTTATGCAGGTGGGTTG+CGG + chr2_3:806312-806331 Msa0269790:intron 55.0%
TAGATTGCGGATGACAGCCC+AGG + chr2_3:807206-807225 Msa0269790:intron 55.0%
! TGAGCTACAGACTGATGGCG+TGG + chr2_3:807244-807263 Msa0269790:CDS 55.0%
TTCAAAAGAGAGGGGGAGGG+GGG + chr2_3:807858-807877 Msa0269790:intron 55.0%
TATGGATCTCCTGCCATGGC+AGG - chr2_3:808481-808500 None:intergenic 55.0%
TGCTCTAGTTGTTGCCCACG+AGG + chr2_3:808678-808697 Msa0269790:CDS 55.0%
GTAAAGGAGGTTGGGAGTGG+GGG + chr2_3:809315-809334 Msa0269790:intron 55.0%
TTCTTCCTAGCTGCCTGCAC+TGG - chr2_3:809389-809408 None:intergenic 55.0%
GATGCAGAAAGGCCAAGGGA+AGG + chr2_3:809425-809444 Msa0269790:CDS 55.0%
TTGCTGACAGGCATGGACAG+AGG + chr2_3:809984-810003 Msa0269790:intron 55.0%
!! CTGCTCGAGAGAAGTGTCAG+TGG + chr2_3:810099-810118 Msa0269790:CDS 55.0%
CTGACTGGGTGCAAGGGAAA+AGG - chr2_3:810733-810752 None:intergenic 55.0%
TTTCCCTTGCACCCAGTCAG+TGG + chr2_3:810733-810752 Msa0269790:intron 55.0%
! TTGCCACTGACTGGGTGCAA+GGG - chr2_3:810739-810758 None:intergenic 55.0%
! TTTGCCACTGACTGGGTGCA+AGG - chr2_3:810740-810759 None:intergenic 55.0%
GTATCAACAAGCTCCGAGGG+CGG - chr2_3:810827-810846 None:intergenic 55.0%
! TGTTGATACCACTGGTGCCG+GGG + chr2_3:810838-810857 Msa0269790:CDS 55.0%
GGTGCCAAGTGCAGAGATCT+AGG + chr2_3:811319-811338 Msa0269790:CDS 55.0%
GAGAGGGAAACGCACAACGG+TGG - chr2_3:806233-806252 None:intergenic 60.0%
CACGCACGTGCTTATGCAGG+TGG + chr2_3:806305-806324 Msa0269790:intron 60.0%
!! GTGGGGTTCTGGACTGCCAA+TGG + chr2_3:807655-807674 Msa0269790:intron 60.0%
! AGGGGGGAGCATGAGTTAGG+TGG + chr2_3:807874-807893 Msa0269790:intron 60.0%
!! AGCTGAGAGCATTCCGCCCT+CGG + chr2_3:810811-810830 Msa0269790:CDS 60.0%
AAATGCATCCCCGGCACCAG+TGG - chr2_3:810849-810868 None:intergenic 60.0%
!! GGCGCTTTGAGGAACGGAGG+AGG - chr2_3:806212-806231 None:intergenic 65.0%
!! GGTGGCGCTTTGAGGAACGG+AGG - chr2_3:806215-806234 None:intergenic 65.0%
CGCACAACGGTGGCGCTTTG+AGG - chr2_3:806223-806242 None:intergenic 65.0%
TTGCGGATGACAGCCCAGGC+AGG + chr2_3:807210-807229 Msa0269790:CDS 65.0%
TGCGGATGACAGCCCAGGCA+GGG + chr2_3:807211-807230 Msa0269790:CDS 65.0%
! GGGAGGGGGGAGCATGAGTT+AGG + chr2_3:807871-807890 Msa0269790:intron 65.0%
GCGGATGACAGCCCAGGCAG+GGG + chr2_3:807212-807231 Msa0269790:CDS 70.0%
AGGCGTGGGTCTGCGCGGTA+TGG - chr2_3:811361-811380 None:intergenic 70.0%
ACGCTAGGCGTGGGTCTGCG+CGG - chr2_3:811366-811385 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 805869 811701 805869 ID=Msa0269790;Name=Msa0269790
chr2_3 mRNA 805869 811701 805869 ID=Msa0269790-mRNA-1;Parent=Msa0269790;Name=Msa0269790-mRNA-1;_AED=0.32;_eAED=0.32;_QI=117|1|1|1|1|1|13|302|406
chr2_3 exon 805869 806072 805869 ID=Msa0269790-mRNA-1:exon:431;Parent=Msa0269790-mRNA-1
chr2_3 exon 806163 806237 806163 ID=Msa0269790-mRNA-1:exon:432;Parent=Msa0269790-mRNA-1
chr2_3 exon 806324 806413 806324 ID=Msa0269790-mRNA-1:exon:433;Parent=Msa0269790-mRNA-1
chr2_3 exon 806724 806801 806724 ID=Msa0269790-mRNA-1:exon:434;Parent=Msa0269790-mRNA-1
chr2_3 exon 807209 807283 807209 ID=Msa0269790-mRNA-1:exon:435;Parent=Msa0269790-mRNA-1
chr2_3 exon 807735 807787 807735 ID=Msa0269790-mRNA-1:exon:436;Parent=Msa0269790-mRNA-1
chr2_3 exon 808549 808699 808549 ID=Msa0269790-mRNA-1:exon:437;Parent=Msa0269790-mRNA-1
chr2_3 exon 809395 809505 809395 ID=Msa0269790-mRNA-1:exon:438;Parent=Msa0269790-mRNA-1
chr2_3 exon 809994 810120 809994 ID=Msa0269790-mRNA-1:exon:439;Parent=Msa0269790-mRNA-1
chr2_3 exon 810212 810309 810212 ID=Msa0269790-mRNA-1:exon:440;Parent=Msa0269790-mRNA-1
chr2_3 exon 810749 810887 810749 ID=Msa0269790-mRNA-1:exon:441;Parent=Msa0269790-mRNA-1
chr2_3 exon 811024 811076 811024 ID=Msa0269790-mRNA-1:exon:442;Parent=Msa0269790-mRNA-1
chr2_3 exon 811316 811701 811316 ID=Msa0269790-mRNA-1:exon:443;Parent=Msa0269790-mRNA-1
chr2_3 five_prime_UTR 805869 805985 805869 ID=Msa0269790-mRNA-1:five_prime_utr;Parent=Msa0269790-mRNA-1
chr2_3 CDS 805986 806072 805986 ID=Msa0269790-mRNA-1:cds;Parent=Msa0269790-mRNA-1
chr2_3 CDS 806163 806237 806163 ID=Msa0269790-mRNA-1:cds;Parent=Msa0269790-mRNA-1
chr2_3 CDS 806324 806413 806324 ID=Msa0269790-mRNA-1:cds;Parent=Msa0269790-mRNA-1
chr2_3 CDS 806724 806801 806724 ID=Msa0269790-mRNA-1:cds;Parent=Msa0269790-mRNA-1
chr2_3 CDS 807209 807283 807209 ID=Msa0269790-mRNA-1:cds;Parent=Msa0269790-mRNA-1
chr2_3 CDS 807735 807787 807735 ID=Msa0269790-mRNA-1:cds;Parent=Msa0269790-mRNA-1
chr2_3 CDS 808549 808699 808549 ID=Msa0269790-mRNA-1:cds;Parent=Msa0269790-mRNA-1
chr2_3 CDS 809395 809505 809395 ID=Msa0269790-mRNA-1:cds;Parent=Msa0269790-mRNA-1
chr2_3 CDS 809994 810120 809994 ID=Msa0269790-mRNA-1:cds;Parent=Msa0269790-mRNA-1
chr2_3 CDS 810212 810309 810212 ID=Msa0269790-mRNA-1:cds;Parent=Msa0269790-mRNA-1
chr2_3 CDS 810749 810887 810749 ID=Msa0269790-mRNA-1:cds;Parent=Msa0269790-mRNA-1
chr2_3 CDS 811024 811076 811024 ID=Msa0269790-mRNA-1:cds;Parent=Msa0269790-mRNA-1
chr2_3 CDS 811316 811399 811316 ID=Msa0269790-mRNA-1:cds;Parent=Msa0269790-mRNA-1
chr2_3 three_prime_UTR 811400 811701 811400 ID=Msa0269790-mRNA-1:three_prime_utr;Parent=Msa0269790-mRNA-1
Gene Sequence

>Msa0269790

ATGTCGAATCTCTGCACTTTTTCTTCTAATATTTCTTCTTCTTCAACTTTCATCTTCAACAATATTCAACATCTCAAATTCTACAATTTAACAAGGAATCATCGCAGTAGAAATTTGAAGGTCAAAATGTGCTCCTCCTCCGTTCCTCAAAGCGCCACCGTTGTGGGTTGCGGATCAGTCACCGTCGATTTCTTGGCTACCGTTGCTGCTTATCCTAAGCCAGATGATAAAATCAGAACAACCACTTTGAAGGTTCAAGGAGGTGGTAATGCCGGCAATGCTTTAACCTGCCTTGCTCGTTTAGGTCTAAACACAAGGCTCGTTTCTAAGATTGCGGATGACAGCCCAGGCAGGGGCATATTAGATGAGCTACAGACTGATGGCGTGGATACATCTTTTATTGTGGTATCTAAAGAGGGAACTTCACCGTTTACGTACATTATTGTGGACAATGAAACGAAGACTCGAACTTGTATACATACCCCTGGATATCCTCCAATGATACCCCAAGATCTTTCAGAATCGAGTTTGTTATCTGCATTGGATGGAGCAAGCATTGTATATTTTGACGGGAGATTGTATGAAACTGCTCTAGTTGTTGCCCACGAGGCAGCTAGGAAGAATATACCCATCTTAATTGATGCAGAAAGGCCAAGGGAAGGGTTAGATGATCTCCTGAAATTAGCTGATTATGTTGTATGCTCAGCTAAGTTTCCAAAGGCATGGACAGAGGCATCAACTGTTCCGCGAGCGCTTGTTTCTATCCTTTTAAGGTTACCCAACGTAAAATTTGTGGCTGTAACTTTGGGAAAAGATGGTTGTATACTGCTCGAGAGAAGTGTCAGTGCAAGTCCTACCACAGAAGAGGTGGATGTAGACAACTTATTGGAATCGCTGGAGTTAAGAAAGGATAAGAGTGCATCAATTCCAACCTGCATATCATCGTCAGTGGCAAAATTAAAGGCAGAAGGAATAGGAACGGTTATCGGGAAACTATACATCGGTACAGCTGAGAGCATTCCGCCCTCGGAGCTTGTTGATACCACTGGTGCCGGGGATGCATTTATTGGATCTGTGATCTATGCTATTTGTTTGAAGTTCTCACCAGAGACAATGCTACCCTTTGCTGCTAATGTGGCAGGTGCCAAGTGCAGAGATCTAGGAGCACGAAGCGGTCTTCCATACCGCGCAGACCCACGCCTAGCGTCCTTTATTCAGTAG

Protein sequence

>Msa0269790

MSNLCTFSSNISSSSTFIFNNIQHLKFYNLTRNHRSRNLKVKMCSSSVPQSATVVGCGSVTVDFLATVAAYPKPDDKIRTTTLKVQGGGNAGNALTCLARLGLNTRLVSKIADDSPGRGILDELQTDGVDTSFIVVSKEGTSPFTYIIVDNETKTRTCIHTPGYPPMIPQDLSESSLLSALDGASIVYFDGRLYETALVVAHEAARKNIPILIDAERPREGLDDLLKLADYVVCSAKFPKAWTEASTVPRALVSILLRLPNVKFVAVTLGKDGCILLERSVSASPTTEEVDVDNLLESLELRKDKSASIPTCISSSVAKLKAEGIGTVIGKLYIGTAESIPPSELVDTTGAGDAFIGSVIYAICLKFSPETMLPFAANVAGAKCRDLGARSGLPYRADPRLASFIQ*