AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0550890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550890 MtrunA17_Chr4g0035811 93.578 545 30 2 1 542 34 576 0.0 994
Msa0550890 MtrunA17_Chr4g0035791 88.889 549 53 3 1 542 1 548 0.0 946
Msa0550890 MtrunA17_Chr4g0035761 79.566 553 98 3 1 541 1 550 0.0 865
Msa0550890 MtrunA17_Chr4g0035741 71.111 540 138 5 8 542 24 550 0.0 750
Msa0550890 MtrunA17_Chr4g0035751 69.680 531 151 6 1 529 1 523 0.0 726
Msa0550890 MtrunA17_Chr5g0448591 25.145 517 324 17 39 524 59 543 2.29e-23 103
Msa0550890 MtrunA17_Chr2g0328761 24.580 476 297 12 100 524 36 500 4.04e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550890 AT2G21340.1 60.893 560 195 7 3 542 4 559 0.0 672
Msa0550890 AT2G21340.2 60.536 560 194 8 3 542 4 556 0.0 663
Msa0550890 AT4G39030.1 64.629 458 153 2 89 541 89 542 0.0 604
Msa0550890 AT2G38330.1 25.194 516 352 11 23 524 13 508 8.45e-22 99.4
Msa0550890 AT4G38380.5 22.684 529 350 14 24 520 32 533 8.03e-15 77.8
Msa0550890 AT3G08040.2 26.287 369 244 11 169 524 55 408 1.56e-14 76.3
Msa0550890 AT3G08040.1 26.287 369 244 11 169 524 159 512 1.77e-14 76.6
Msa0550890 AT4G38380.2 22.263 539 350 14 24 520 32 543 7.91e-14 74.7
Msa0550890 AT4G38380.1 22.263 539 350 14 24 520 32 543 7.91e-14 74.7
Msa0550890 AT4G38380.3 22.661 481 311 11 82 524 18 475 3.47e-12 69.3
Msa0550890 AT1G51340.3 22.698 467 293 10 117 524 51 508 3.99e-12 68.9
Msa0550890 AT1G51340.5 22.698 467 293 10 117 524 51 508 3.99e-12 68.9
Msa0550890 AT1G51340.2 22.698 467 293 10 117 524 51 508 3.99e-12 68.9
Msa0550890 AT1G51340.1 23.718 468 287 12 117 524 45 502 6.80e-11 65.1

Find 155 sgRNAs with CRISPR-Local

Find 509 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTCTCGTTCTTGGAATT+TGG 0.118992 4_1:-46458393 Msa0550890:three_prime_UTR
GTCGATTGCTACTTCAAATA+TGG 0.215269 4_1:-46464409 Msa0550890:CDS
TTTGAATGGTCTAATATTAT+TGG 0.222744 4_1:-46459057 Msa0550890:intron
CTGGACCTGCTATTGGTCTT+TGG 0.222999 4_1:-46464638 Msa0550890:CDS
TACTCTCCTCTATTTCTAAA+TGG 0.226180 4_1:+46458419 None:intergenic
AGTAAATATGTTCTCGTTCT+TGG 0.242038 4_1:-46458400 Msa0550890:three_prime_UTR
GCTGCTGCCAGTATTATAAA+TGG 0.247426 4_1:-46461702 Msa0550890:CDS
ATTTGTGACATTGATGTTAA+AGG 0.250101 4_1:-46461202 Msa0550890:intron
CTAAGGTCTCTTCTAACTAT+TGG 0.258425 4_1:-46460556 Msa0550890:CDS
TCAATTGAACTTGCTGCTTT+AGG 0.260915 4_1:-46464561 Msa0550890:intron
ATCAATGGGTACAAATAAAA+TGG 0.278415 4_1:-46461060 Msa0550890:CDS
ATGGGATTGCTGGGGCTGCA+TGG 0.278670 4_1:-46461644 Msa0550890:CDS
CTCTGAAAATCATCTGTAGA+TGG 0.279023 4_1:+46458256 None:intergenic
TGCCAATGGGTATAGTTATT+TGG 0.279792 4_1:-46458471 Msa0550890:three_prime_UTR
ACCAATTCCATTTATAATAC+TGG 0.285900 4_1:+46461695 None:intergenic
TGTTCTCGTTCTTGGAATTT+GGG 0.288693 4_1:-46458392 Msa0550890:three_prime_UTR
GGAGTTCCATTTATAGTTCA+TGG 0.296507 4_1:-46458701 Msa0550890:three_prime_UTR
TTGGGGACCCTTGAAGGCTT+TGG 0.310354 4_1:-46461724 Msa0550890:CDS
ATGTTTGCACCTTGCACTTT+GGG 0.319354 4_1:+46462204 None:intergenic
GTCTTGGTATGAAGGATTCT+TGG 0.321480 4_1:-46461743 Msa0550890:CDS
TGCCACTGCACTTGCTAAAC+AGG 0.324213 4_1:-46464385 Msa0550890:intron
TTTGCCTTCACCATTCCTTC+AGG 0.327061 4_1:-46461264 Msa0550890:CDS
AATGTACCATGAACTATAAA+TGG 0.328094 4_1:+46458695 None:intergenic
CATAAATGATTGAGCAGTTT+GGG 0.328411 4_1:+46460872 None:intergenic
TACTTAGGCTATGGGATTGC+TGG 0.328970 4_1:-46461654 Msa0550890:CDS
ATCCCTTCTCGTTTAGAGTT+TGG 0.333193 4_1:+46461295 None:intergenic
GGTACTATATGTACATTCTT+TGG 0.333716 4_1:+46462577 None:intergenic
CCCTCCAGGCCAACAGTTGC+GGG 0.334192 4_1:+46460295 None:intergenic
CTCATTGATACTGCTGTTGT+TGG 0.336581 4_1:-46464594 Msa0550890:CDS
AACTGGTTGAGCAGAGTATA+TGG 0.336997 4_1:-46464689 Msa0550890:CDS
AAGGAAATAGTATTGTTTAC+TGG 0.339822 4_1:-46464657 Msa0550890:CDS
TGGGATTGCTGGGGCTGCAT+GGG 0.346105 4_1:-46461643 Msa0550890:CDS
TCGGAAACTAAGCGGGGAAA+TGG 0.352075 4_1:-46458554 Msa0550890:three_prime_UTR
GCATAAATGATTGAGCAGTT+TGG 0.352223 4_1:+46460871 None:intergenic
TTTCCCTTGCTGGATTTCAA+TGG 0.356634 4_1:-46458913 Msa0550890:CDS
CGGAAACTAAGCGGGGAAAT+GGG 0.359119 4_1:-46458553 Msa0550890:three_prime_UTR
TTGTTTACTGGACCTGCTAT+TGG 0.364742 4_1:-46464645 Msa0550890:CDS
GCATGGCCTTGTTTACTTGT+TGG 0.365617 4_1:-46462235 Msa0550890:CDS
CATGGCCTTGTTTACTTGTT+GGG 0.366151 4_1:-46462234 Msa0550890:CDS
AGTTGAAGACTGCATAGTTT+AGG 0.368285 4_1:-46458722 Msa0550890:exon
AGTAAATCGGAGTTTGATAA+AGG 0.368471 4_1:-46460832 Msa0550890:intron
CAGATCCTATCTAGCAGATA+TGG 0.371566 4_1:-46458953 Msa0550890:CDS
CTAACTATTGGAGCTGTACT+CGG 0.380237 4_1:-46460544 Msa0550890:CDS
GACAGGCTCGGTCGCTTCTA+AGG 0.385164 4_1:-46460573 Msa0550890:intron
TCTTGGTATGAAGGATTCTT+GGG 0.387786 4_1:-46461742 Msa0550890:CDS
GGATTCTTGGGGACCCTTGA+AGG 0.393221 4_1:-46461730 Msa0550890:CDS
GCAAACCATATCTGCTAGAT+AGG 0.394990 4_1:+46458948 None:intergenic
TTCATGCAGTCTTGGTATGA+AGG 0.398143 4_1:-46461751 Msa0550890:intron
TTCCCTTGCTGGATTTCAAT+GGG 0.401577 4_1:-46458912 Msa0550890:intron
GCTATTGGTCTTTGGTTATG+TGG 0.403668 4_1:-46464630 Msa0550890:CDS
TGGCCTGGAGGGAACATTGC+TGG 0.407179 4_1:-46460284 Msa0550890:intron
ACCTGATCAGATGGTTATCC+AGG 0.414172 4_1:-46460464 Msa0550890:CDS
GATTGAGCAGTTTGGGATAG+AGG 0.415616 4_1:+46460879 None:intergenic
GGCAGCAGCCAAAGCCTTCA+AGG 0.419588 4_1:+46461716 None:intergenic
AACATCAATGTCACAAATAC+AGG 0.423376 4_1:+46461207 None:intergenic
TTTATGCCTGGGTTGATGTA+TGG 0.425479 4_1:-46460855 Msa0550890:CDS
AGAAGAAGAAGTGAAGGAAC+TGG 0.429921 4_1:-46464706 Msa0550890:CDS
AGAACTTGAAGCGACCGTTC+CGG 0.430414 4_1:+46464811 None:intergenic
GCCAGTATTATAAATGGAAT+TGG 0.442168 4_1:-46461696 Msa0550890:CDS
TGGGGCTGCATGGGCTACAT+TGG 0.444208 4_1:-46461634 Msa0550890:CDS
TCCCTCCAGGCCAACAGTTG+CGG 0.444843 4_1:+46460294 None:intergenic
TATGTTTGCACCTTGCACTT+TGG 0.449203 4_1:+46462203 None:intergenic
CTGTGCAGATACTTAGGCTA+TGG 0.449705 4_1:-46461663 Msa0550890:CDS
GCTTTGCCATTTAGAAATAG+AGG 0.450678 4_1:-46458425 Msa0550890:three_prime_UTR
TTTATAAGCTTGTCAATGAC+TGG 0.456026 4_1:-46459089 Msa0550890:CDS
TTGGTATTAGATTCGAGGGT+TGG 0.456370 4_1:-46462257 Msa0550890:intron
CACACCCGCAACTGTTGGCC+TGG 0.462187 4_1:-46460299 Msa0550890:CDS
AAGATATATGTTCAAGGCGG+TGG 0.465973 4_1:+46458511 None:intergenic
ACTGCTCAATCATTTATGCC+TGG 0.466777 4_1:-46460867 Msa0550890:CDS
CGCAGCTAATACTTATGTCC+AGG 0.472482 4_1:-46462554 Msa0550890:intron
CCCGCAACTGTTGGCCTGGA+GGG 0.472789 4_1:-46460295 Msa0550890:CDS
CTGCTCAATCATTTATGCCT+GGG 0.474949 4_1:-46460866 Msa0550890:CDS
ATAATTCTGTGCAGATACTT+AGG 0.476106 4_1:-46461669 Msa0550890:CDS
TTGTTGGAACATCTGTTCCT+TGG 0.476393 4_1:-46460507 Msa0550890:CDS
AAATGCCATTGGGAGATAGA+AGG 0.478517 4_1:+46458781 None:intergenic
CTTCTTCTTCAACACACTCG+TGG 0.490309 4_1:+46464727 None:intergenic
TCCTGGATAACCATCTGATC+AGG 0.491456 4_1:+46460463 None:intergenic
ATTTGCTTATGCAGGCTGGA+TGG 0.495362 4_1:-46459121 Msa0550890:intron
AGTTGTATCGGAAACTAAGC+GGG 0.499067 4_1:-46458561 Msa0550890:three_prime_UTR
TTGCCTTCACCATTCCTTCA+GGG 0.500207 4_1:-46461263 Msa0550890:CDS
CTACAGGTGCTGAGTTGTAT+CGG 0.501483 4_1:-46458573 Msa0550890:three_prime_UTR
TTTGCTTATGCAGGCTGGAT+GGG 0.502184 4_1:-46459120 Msa0550890:intron
TATTGGGTTAGCATGTGGCT+TGG 0.503143 4_1:-46462781 Msa0550890:CDS
TTCCGAGTATAAAATGCCAT+TGG 0.504973 4_1:+46458770 None:intergenic
CTTGAAGCGACCGTTCCGGC+TGG 0.508230 4_1:+46464815 None:intergenic
TCCGAGTATAAAATGCCATT+GGG 0.511889 4_1:+46458771 None:intergenic
CGATCAAGTGTGGTGCCAAT+GGG 0.515102 4_1:-46458484 Msa0550890:three_prime_UTR
ACTTAGGCTATGGGATTGCT+GGG 0.518480 4_1:-46461653 Msa0550890:CDS
GGTTGATGTATGGAGTAAAT+CGG 0.519319 4_1:-46460845 Msa0550890:CDS
AATCGGGAAGATGACAGAAA+AGG 0.522221 4_1:+46465018 None:intergenic
TTCTTCTTGAGAAGGGAGGA+TGG 0.522481 4_1:+46464879 None:intergenic
CTTCACCATTCCTTCAGGGA+AGG 0.523053 4_1:-46461259 Msa0550890:CDS
TGGGAGATAGAAGGCGCAGA+AGG 0.526952 4_1:+46458790 None:intergenic
TAACTATTGGAGCTGTACTC+GGG 0.527379 4_1:-46460543 Msa0550890:CDS
AGATGTGTTCTTCTTGAGAA+GGG 0.531691 4_1:+46464872 None:intergenic
GAGTATATGGATTCAGATGA+AGG 0.533192 4_1:-46464676 Msa0550890:CDS
GCGATCAAGTGTGGTGCCAA+TGG 0.534093 4_1:-46458485 Msa0550890:three_prime_UTR
GAATTGTATCGACATTAAGA+TGG 0.534271 4_1:+46458608 None:intergenic
AAATCATCTGTAGATGGGAA+TGG 0.535165 4_1:+46458262 None:intergenic
TCTGAAAATCATCTGTAGAT+GGG 0.543808 4_1:+46458257 None:intergenic
GGAAACTAAGCGGGGAAATG+GGG 0.546802 4_1:-46458552 Msa0550890:three_prime_UTR
TAGATGTGTTCTTCTTGAGA+AGG 0.547962 4_1:+46464871 None:intergenic
TGTGCAGATACTTAGGCTAT+GGG 0.548209 4_1:-46461662 Msa0550890:CDS
AAGCCACCATAAAAGTAGAA+AGG 0.550147 4_1:+46458444 None:intergenic
TACCAAATAACTATACCCAT+TGG 0.551479 4_1:+46458469 None:intergenic
AAATTCCTTCCCTGAAGGAA+TGG 0.556149 4_1:+46461254 None:intergenic
ATGGTCACACCCGCAACTGT+TGG 0.560257 4_1:-46460304 Msa0550890:CDS
ATTACATCCTCCAGCCGGAA+CGG 0.560561 4_1:-46464825 Msa0550890:CDS
GACAGAAATTCCTTCCCTGA+AGG 0.564886 4_1:+46461249 None:intergenic
TTTGGTGCAACAACGCTCGC+AGG 0.566164 4_1:-46462735 Msa0550890:intron
ATACCAGCAATGTTCCCTCC+AGG 0.568305 4_1:+46460281 None:intergenic
ATTAGATTCGAGGGTTGGCA+TGG 0.569888 4_1:-46462252 Msa0550890:intron
TATGTTTGTGTAGAATAAGG+AGG 0.570031 4_1:-46462835 Msa0550890:intron
GCAGCAGCCAAAGCCTTCAA+GGG 0.575285 4_1:+46461717 None:intergenic
ATGGTACATTATACAAATAG+AGG 0.576635 4_1:-46458682 Msa0550890:three_prime_UTR
GATATGGTTTGCAAGGCTGT+TGG 0.577198 4_1:-46458937 Msa0550890:CDS
TCTTCTTGAGAAGGGAGGAT+GGG 0.583100 4_1:+46464880 None:intergenic
TCTAGCAGATATGGTTTGCA+AGG 0.584349 4_1:-46458944 Msa0550890:CDS
GAGCCAAACTCTAAACGAGA+AGG 0.585139 4_1:-46461298 Msa0550890:CDS
TCTGTAACATTGAAATCCGC+GGG 0.585948 4_1:+46465062 None:intergenic
CTGCGCCTTCTATCTCCCAA+TGG 0.586913 4_1:-46458786 Msa0550890:CDS
ATTCAGTACTCAGAAACTAC+AGG 0.588240 4_1:-46458589 Msa0550890:three_prime_UTR
TCTTGAGAAGGGAGGATGGG+AGG 0.589007 4_1:+46464883 None:intergenic
GGTCGATCGCCCAAAGTGCA+AGG 0.590625 4_1:-46462213 Msa0550890:intron
GTCTGTAACATTGAAATCCG+CGG 0.593205 4_1:+46465061 None:intergenic
GAAGCGACCGTTCCGGCTGG+AGG 0.594158 4_1:+46464818 None:intergenic
GAAACTAAGCGGGGAAATGG+GGG 0.595816 4_1:-46458551 Msa0550890:three_prime_UTR
GAGGATGGGAGGAAATGAAG+AGG 0.602288 4_1:+46464894 None:intergenic
CTTCCCTGAAGGAATGGTGA+AGG 0.604960 4_1:+46461260 None:intergenic
AGCCAAACTCTAAACGAGAA+GGG 0.607954 4_1:-46461297 Msa0550890:CDS
ACCCGCAACTGTTGGCCTGG+AGG 0.612770 4_1:-46460296 Msa0550890:CDS
TACATGTTATGCACAATATG+TGG 0.612778 4_1:-46460906 Msa0550890:CDS
GATACTGCTGTTGTTGGTCA+AGG 0.613645 4_1:-46464588 Msa0550890:CDS
GGGAGATAGAAGGCGCAGAA+GGG 0.619859 4_1:+46458791 None:intergenic
TGGACATAAGTATTAGCTGC+GGG 0.623250 4_1:+46462556 None:intergenic
GCATTATTACATCCTCCAGC+CGG 0.624638 4_1:-46464830 Msa0550890:CDS
TACCCATTGAAATCCAGCAA+GGG 0.639256 4_1:+46458910 None:intergenic
TGTGTTCTTCTTGAGAAGGG+AGG 0.639307 4_1:+46464875 None:intergenic
CATAACCAAAGACCAATAGC+AGG 0.639786 4_1:+46464633 None:intergenic
GGAAAGAGAAAGAAAACGAG+TGG 0.642394 4_1:+46465039 None:intergenic
ATCGACCCAACAAGTAAACA+AGG 0.644860 4_1:+46462229 None:intergenic
AGATTTAGTTATCATTCCCG+CGG 0.646620 4_1:-46465078 None:intergenic
CTTAGGCTATGGGATTGCTG+GGG 0.650164 4_1:-46461652 Msa0550890:CDS
CTTGGTATGAAGGATTCTTG+GGG 0.656274 4_1:-46461741 Msa0550890:CDS
TTACCCATTGAAATCCAGCA+AGG 0.667040 4_1:+46458909 None:intergenic
AAAATGTAGGGGAATAACCA+AGG 0.670464 4_1:+46460490 None:intergenic
GAGTTGTATCGGAAACTAAG+CGG 0.674848 4_1:-46458562 Msa0550890:three_prime_UTR
AACCTGTTTAGCAAGTGCAG+TGG 0.676183 4_1:+46464383 None:intergenic
TGATCAGATGGTTATCCAGG+AGG 0.694479 4_1:-46460461 Msa0550890:intron
TTTACTCCATACATCAACCC+AGG 0.695974 4_1:+46460849 None:intergenic
CTGGACATAAGTATTAGCTG+CGG 0.697551 4_1:+46462555 None:intergenic
GGAGGAAATGAAGAGGTACG+TGG 0.705335 4_1:+46464901 None:intergenic
TGACTTGTAAGGTAGGAATG+TGG 0.734667 4_1:-46458361 Msa0550890:three_prime_UTR
GTATCAATGAGACTCATCAA+CGG 0.734956 4_1:+46464606 None:intergenic
GTTGTATCGGAAACTAAGCG+GGG 0.736927 4_1:-46458560 Msa0550890:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAAAACAAAAAAAAAAT+CGG + chr4_1:46458335-46458354 None:intergenic 10.0%
!!! TAAGATTTTAAAAAAATTGA+AGG - chr4_1:46459936-46459955 Msa0550890:intron 10.0%
!! TATCATTTAATTCATATTAT+TGG - chr4_1:46461547-46461566 Msa0550890:intron 10.0%
!! AAGAAAACAAAAAAAAAATC+GGG + chr4_1:46458334-46458353 None:intergenic 15.0%
!!! CATATTTAGAAACATTTTAT+AGG - chr4_1:46460004-46460023 Msa0550890:intron 15.0%
!! ACAATCTTAATTTAAATTGA+AGG + chr4_1:46460823-46460842 None:intergenic 15.0%
!!! TTTCTTGTGATTTTAAATAA+AGG - chr4_1:46460914-46460933 Msa0550890:CDS 15.0%
!!! ATTTTAAATAAAGGTTTGTA+TGG - chr4_1:46460923-46460942 Msa0550890:CDS 15.0%
!! TTTATCACTAAAATAGAATA+TGG + chr4_1:46461235-46461254 None:intergenic 15.0%
!! TTGTATTAAGCTTATTAATT+AGG - chr4_1:46461809-46461828 Msa0550890:intron 15.0%
!! TTAATTAATCGTATCATATA+TGG - chr4_1:46461925-46461944 Msa0550890:intron 15.0%
!! TAATTAATCGTATCATATAT+GGG - chr4_1:46461926-46461945 Msa0550890:intron 15.0%
!!! GAATTTTCAGTTATATTTAA+AGG + chr4_1:46462208-46462227 None:intergenic 15.0%
!!! TTAAAATATGTTTTTGAGTT+TGG + chr4_1:46462375-46462394 None:intergenic 15.0%
!!! AGTTGAATTTCATTTTATAT+AGG - chr4_1:46462607-46462626 Msa0550890:intron 15.0%
!! TGAATATATATAACAATGTA+TGG + chr4_1:46462714-46462733 None:intergenic 15.0%
!!! TTATTTTATTGTTCTTATGT+TGG - chr4_1:46463107-46463126 Msa0550890:intron 15.0%
!!! ATTTTTATGCTAAAAATCTT+AGG + chr4_1:46463180-46463199 None:intergenic 15.0%
!! TAAAAGATATAAAATTACCA+TGG + chr4_1:46463255-46463274 None:intergenic 15.0%
!! ATAATAAATGGGAAAAAATA+TGG - chr4_1:46463579-46463598 Msa0550890:intron 15.0%
!! GTTATTAAGTACATTATATA+TGG + chr4_1:46463739-46463758 None:intergenic 15.0%
!! ACTTATTTATATATTTATCC+AGG - chr4_1:46464160-46464179 Msa0550890:intron 15.0%
!!! TGACACTAATTATATTTTTA+TGG + chr4_1:46465049-46465068 None:intergenic 15.0%
!!! TAATGCATTGTTTTGTTAAA+TGG + chr4_1:46458489-46458508 None:intergenic 20.0%
!!! TTTTTCTTCATATTCATGTA+TGG + chr4_1:46458578-46458597 None:intergenic 20.0%
!!! TACTGTTTTTTGTGATTATT+TGG - chr4_1:46458882-46458901 Msa0550890:intron 20.0%
!!! ACTGTTTTTTGTGATTATTT+GGG - chr4_1:46458883-46458902 Msa0550890:intron 20.0%
!! TTATCTACCCAATTAAAAAA+GGG + chr4_1:46458989-46459008 None:intergenic 20.0%
!! TGTTATATGATCATATATTG+TGG + chr4_1:46459966-46459985 None:intergenic 20.0%
!!! CTTTTTTTCACAAGATTATT+TGG - chr4_1:46460580-46460599 Msa0550890:intron 20.0%
!!! GTTGTATACTTTATTTTAAG+AGG + chr4_1:46460954-46460973 None:intergenic 20.0%
!! AAATACTTAAACTATTCTCA+GGG + chr4_1:46461473-46461492 None:intergenic 20.0%
!! TAAATACTTAAACTATTCTC+AGG + chr4_1:46461474-46461493 None:intergenic 20.0%
!! TATGTTGTAGATAATGAATT+AGG - chr4_1:46461753-46461772 Msa0550890:intron 20.0%
!! ATGTTGTAGATAATGAATTA+GGG - chr4_1:46461754-46461773 Msa0550890:intron 20.0%
!! GATTAATTAATTATGATGTG+TGG + chr4_1:46461915-46461934 None:intergenic 20.0%
!!! TTTAATCCAACTCTTATTTT+AGG - chr4_1:46462390-46462409 Msa0550890:intron 20.0%
!!! AAGATCATTTTCTTTTTGAA+GGG - chr4_1:46462630-46462649 Msa0550890:intron 20.0%
!! TACTACAATATGAATTAGTA+AGG + chr4_1:46462683-46462702 None:intergenic 20.0%
!! TCATGTTAGATTGAAATATT+AGG - chr4_1:46463077-46463096 Msa0550890:intron 20.0%
!! TTCAACTTGTCTATAATAAA+TGG - chr4_1:46463567-46463586 Msa0550890:intron 20.0%
!! TCAACTTGTCTATAATAAAT+GGG - chr4_1:46463568-46463587 Msa0550890:intron 20.0%
!!! AAGGCATTAATTAGTTATAT+GGG + chr4_1:46464040-46464059 None:intergenic 20.0%
!!! TAAGGCATTAATTAGTTATA+TGG + chr4_1:46464041-46464060 None:intergenic 20.0%
!! TTTGAATGGTCTAATATTAT+TGG - chr4_1:46464276-46464295 Msa0550890:intron 20.0%
! AAGGAAATAGTATTGTTTAC+TGG - chr4_1:46458676-46458695 Msa0550890:three_prime_UTR 25.0%
!!! TTTAATGCCCCTTTTTTAAT+TGG - chr4_1:46458978-46458997 Msa0550890:intron 25.0%
!!! TTAATGCCCCTTTTTTAATT+GGG - chr4_1:46458979-46458998 Msa0550890:intron 25.0%
! TATCTACCCAATTAAAAAAG+GGG + chr4_1:46458988-46459007 None:intergenic 25.0%
! GTTATCTACCCAATTAAAAA+AGG + chr4_1:46458990-46459009 None:intergenic 25.0%
!! AGATAGTTGGTATTCAAATA+TGG - chr4_1:46459034-46459053 Msa0550890:intron 25.0%
!! GATAGTTGGTATTCAAATAT+GGG - chr4_1:46459035-46459054 Msa0550890:intron 25.0%
! TCATAAAAGTTGTTAGCAAA+TGG + chr4_1:46459430-46459449 None:intergenic 25.0%
!! TTTTCATTGGTCAAAAACAA+TGG - chr4_1:46459468-46459487 Msa0550890:intron 25.0%
! TGTCTAAAAGTTGTCAAAAA+AGG - chr4_1:46459549-46459568 Msa0550890:intron 25.0%
! TGACAATTATATTAGAGATG+TGG - chr4_1:46459595-46459614 Msa0550890:intron 25.0%
! GACAATTATATTAGAGATGT+GGG - chr4_1:46459596-46459615 Msa0550890:intron 25.0%
! CTTCTGAATTTATACTTAAG+AGG - chr4_1:46459887-46459906 Msa0550890:intron 25.0%
!!! AAAAAATTCACTGGTCTTTT+GGG + chr4_1:46460407-46460426 None:intergenic 25.0%
! AAGTATGTTTGTGTAGAATA+AGG - chr4_1:46460495-46460514 Msa0550890:CDS 25.0%
!!! ATATCTGTCTTGCTTTTTAT+TGG - chr4_1:46460535-46460554 Msa0550890:CDS 25.0%
!!! TATCTGTCTTGCTTTTTATT+GGG - chr4_1:46460536-46460555 Msa0550890:CDS 25.0%
! ATTACTATCATCCCAAAAAA+TGG + chr4_1:46460655-46460674 None:intergenic 25.0%
! ATAGTAATCAGAAAAAAACC+TGG + chr4_1:46460800-46460819 None:intergenic 25.0%
! AATTGAAGTTACTCATTTCT+CGG + chr4_1:46460890-46460909 None:intergenic 25.0%
! AAGTATACAACCTTTCAAAT+AGG - chr4_1:46460963-46460982 Msa0550890:intron 25.0%
! TACATATTGAGATTGATCAA+AGG - chr4_1:46461011-46461030 Msa0550890:intron 25.0%
! AATCATCAACATAGAGAAAA+CGG + chr4_1:46461350-46461369 None:intergenic 25.0%
! AACAGTTCAAAGAATGATTT+AGG + chr4_1:46461432-46461451 None:intergenic 25.0%
! ACCAATTCCATTTATAATAC+TGG + chr4_1:46461641-46461660 None:intergenic 25.0%
!! ATATAGAAGCTTTAACTCAT+GGG + chr4_1:46461835-46461854 None:intergenic 25.0%
!! TATATAGAAGCTTTAACTCA+TGG + chr4_1:46461836-46461855 None:intergenic 25.0%
! TAGTTTAGTGCATTGAAAAT+AGG + chr4_1:46461956-46461975 None:intergenic 25.0%
! ATTTGTGACATTGATGTTAA+AGG - chr4_1:46462131-46462150 Msa0550890:intron 25.0%
! AACTGAAAATTCTGATGTTT+AGG - chr4_1:46462216-46462235 Msa0550890:CDS 25.0%
! ATCAATGGGTACAAATAAAA+TGG - chr4_1:46462273-46462292 Msa0550890:intron 25.0%
! ATAGTTACAAAATACAAGAC+AGG + chr4_1:46462322-46462341 None:intergenic 25.0%
! AAATGATCATCCTGTATATA+AGG + chr4_1:46462567-46462586 None:intergenic 25.0%
!! GAAGATCATTTTCTTTTTGA+AGG - chr4_1:46462629-46462648 Msa0550890:intron 25.0%
!!! AGAAATTTTCAAGTTTCCTT+TGG - chr4_1:46462924-46462943 Msa0550890:intron 25.0%
!! TGATAACAACTTGATCTTTT+AGG + chr4_1:46463418-46463437 None:intergenic 25.0%
! TTGAATTTAAAGGGAAGTAA+TGG + chr4_1:46463539-46463558 None:intergenic 25.0%
!! TTATTATAGACAAGTTGAAC+CGG + chr4_1:46463566-46463585 None:intergenic 25.0%
!!! CAGTGCAATTTTCTTTTTTA+AGG - chr4_1:46463705-46463724 Msa0550890:intron 25.0%
!! TAGCATTTTCTATGAATTCT+AGG + chr4_1:46464458-46464477 None:intergenic 25.0%
! CATATTGTGTTTATTAGGTT+CGG - chr4_1:46464509-46464528 Msa0550890:intron 25.0%
! AATGTACCATGAACTATAAA+TGG + chr4_1:46464641-46464660 None:intergenic 25.0%
! ATGGTACATTATACAAATAG+AGG - chr4_1:46464651-46464670 Msa0550890:CDS 25.0%
! AAAAAGATATATGTTCAAGG+CGG + chr4_1:46464828-46464847 None:intergenic 25.0%
CACTTCGAAGAAAACAAAAA+TGG - chr4_1:46458360-46458379 Msa0550890:three_prime_UTR 30.0%
GCGCAATTTCAACAATTAAA+CGG + chr4_1:46458823-46458842 None:intergenic 30.0%
!!! ATTTTGTTTTCTTCATGAGC+AGG - chr4_1:46458853-46458872 Msa0550890:intron 30.0%
TAATCACAAAAAACAGTAGC+AGG + chr4_1:46458880-46458899 None:intergenic 30.0%
TACATATGGCTAATGATCTA+AGG - chr4_1:46459085-46459104 Msa0550890:CDS 30.0%
!!! TAAGGTTTTAGGTAGAAATG+TGG - chr4_1:46459103-46459122 Msa0550890:CDS 30.0%
CTTTATATCGAAAGTCTTTC+TGG - chr4_1:46459248-46459267 Msa0550890:intron 30.0%
TGTGAGAAACTTACAATTGA+TGG - chr4_1:46459320-46459339 Msa0550890:intron 30.0%
GTGAGAAACTTACAATTGAT+GGG - chr4_1:46459321-46459340 Msa0550890:intron 30.0%
AATGAAAAGAGAGAAAAAGG+AGG + chr4_1:46459456-46459475 None:intergenic 30.0%
! TCCTTTTTCTCTCTTTTCAT+TGG - chr4_1:46459455-46459474 Msa0550890:intron 30.0%
ACCAATGAAAAGAGAGAAAA+AGG + chr4_1:46459459-46459478 None:intergenic 30.0%
CAAAAACCTAAGATCAGTTT+GGG - chr4_1:46459718-46459737 Msa0550890:intron 30.0%
GAAAAAAGGAATGAGAAAGT+GGG - chr4_1:46459768-46459787 Msa0550890:intron 30.0%
!!! ACTGCAATTTTCAAGTTCAT+GGG + chr4_1:46459860-46459879 None:intergenic 30.0%
! AGTAATTAGTTGTTACTTGC+TGG - chr4_1:46460064-46460083 Msa0550890:intron 30.0%
! AAATGCTTTAGGTTCTGTTT+GGG + chr4_1:46460202-46460221 None:intergenic 30.0%
ACTCGTATATCAAATGCTTT+AGG + chr4_1:46460213-46460232 None:intergenic 30.0%
! ATCTGAAGCAATCTATGATT+AGG - chr4_1:46460348-46460367 Msa0550890:intron 30.0%
!!! CAAAAAATTCACTGGTCTTT+TGG + chr4_1:46460408-46460427 None:intergenic 30.0%
! TTTATGCACACAGAACTTTT+AGG - chr4_1:46460446-46460465 Msa0550890:intron 30.0%
CAAACATACTTACTCATGAA+AGG + chr4_1:46460486-46460505 None:intergenic 30.0%
TATGTTTGTGTAGAATAAGG+AGG - chr4_1:46460498-46460517 Msa0550890:CDS 30.0%
GTAATTCACCAATGCATAAA+TGG - chr4_1:46460670-46460689 Msa0550890:intron 30.0%
CTCTATTACCATTTATGCAT+TGG + chr4_1:46460681-46460700 None:intergenic 30.0%
TAGAACAATTCATCAGACAT+GGG + chr4_1:46460709-46460728 None:intergenic 30.0%
ATAGAACAATTCATCAGACA+TGG + chr4_1:46460710-46460729 None:intergenic 30.0%
GGTACTATATGTACATTCTT+TGG + chr4_1:46460759-46460778 None:intergenic 30.0%
AAAGCAGAATCCTATTTGAA+AGG + chr4_1:46460976-46460995 None:intergenic 30.0%
TATTGAGATTGATCAAAGGA+AGG - chr4_1:46461015-46461034 Msa0550890:intron 30.0%
! TAGTAACACTGGATTTCTTT+TGG - chr4_1:46461057-46461076 Msa0550890:CDS 30.0%
! TTCTTTTGGTATTAGATTCG+AGG - chr4_1:46461071-46461090 Msa0550890:CDS 30.0%
! TCTTTTGGTATTAGATTCGA+GGG - chr4_1:46461072-46461091 Msa0550890:CDS 30.0%
! AATAGCTGCTTAGAAACTTT+TGG - chr4_1:46461264-46461283 Msa0550890:CDS 30.0%
!!! AATGACTTTTTCAGATAGCA+AGG - chr4_1:46461307-46461326 Msa0550890:CDS 30.0%
GAAAACGGTATTAAGACAAA+AGG + chr4_1:46461335-46461354 None:intergenic 30.0%
GCCAGTATTATAAATGGAAT+TGG - chr4_1:46461637-46461656 Msa0550890:CDS 30.0%
ATAATTCTGTGCAGATACTT+AGG - chr4_1:46461664-46461683 Msa0550890:CDS 30.0%
AGATAATGAATTAGGGTTGT+AGG - chr4_1:46461761-46461780 Msa0550890:intron 30.0%
AACATCAATGTCACAAATAC+AGG + chr4_1:46462129-46462148 None:intergenic 30.0%
TGAAAATTCTGATGTTTAGG+TGG - chr4_1:46462219-46462238 Msa0550890:CDS 30.0%
TACATGTTATGCACAATATG+TGG - chr4_1:46462427-46462446 Msa0550890:intron 30.0%
CATAAATGATTGAGCAGTTT+GGG + chr4_1:46462464-46462483 None:intergenic 30.0%
AGTAAATCGGAGTTTGATAA+AGG - chr4_1:46462501-46462520 Msa0550890:intron 30.0%
GTCAAGATACTATAAACTCA+GGG + chr4_1:46462743-46462762 None:intergenic 30.0%
TGTCAAGATACTATAAACTC+AGG + chr4_1:46462744-46462763 None:intergenic 30.0%
TGAGTTTATAGTATCTTGAC+AGG - chr4_1:46462743-46462762 Msa0550890:CDS 30.0%
TGATCAGGTGTAAAAATGTA+GGG + chr4_1:46462858-46462877 None:intergenic 30.0%
!! TCAAGTTTCCTTTGGAATTA+AGG - chr4_1:46462932-46462951 Msa0550890:intron 30.0%
AAAAATCTTAGGCCAAGTAA+TGG + chr4_1:46463169-46463188 None:intergenic 30.0%
CCTACTTATTTAGGTAGAAT+GGG - chr4_1:46463329-46463348 Msa0550890:intron 30.0%
CTACTTATTTAGGTAGAATG+GGG - chr4_1:46463330-46463349 Msa0550890:intron 30.0%
CTACCAAATAGTTAAGAGTT+AGG + chr4_1:46463367-46463386 None:intergenic 30.0%
!! GAGGTTTTACATTGATAACT+CGG - chr4_1:46463441-46463460 Msa0550890:intron 30.0%
!! TTTTACATTGATAACTCGGA+GGG - chr4_1:46463445-46463464 Msa0550890:intron 30.0%
! TATTATAGACAAGTTGAACC+GGG + chr4_1:46463565-46463584 None:intergenic 30.0%
CTTATTCATGTAGATGTCTA+AGG - chr4_1:46463625-46463644 Msa0550890:intron 30.0%
!! TTAGGGTTAACTTGTAACAA+CGG - chr4_1:46463898-46463917 Msa0550890:intron 30.0%
AGTCTCATATCAACTATGAA+CGG - chr4_1:46463985-46464004 Msa0550890:intron 30.0%
! TAATGCCTTAAACTTTTGAG+TGG - chr4_1:46464051-46464070 Msa0550890:intron 30.0%
! TCTAGGATTAACATGAGATT+GGG + chr4_1:46464088-46464107 None:intergenic 30.0%
! ATCTAGGATTAACATGAGAT+TGG + chr4_1:46464089-46464108 None:intergenic 30.0%
AATAAGTTGTCATGACTGTT+GGG + chr4_1:46464147-46464166 None:intergenic 30.0%
AAATAAGTTGTCATGACTGT+TGG + chr4_1:46464148-46464167 None:intergenic 30.0%
TTGTCTATATTTGCTTATGC+AGG - chr4_1:46464204-46464223 Msa0550890:intron 30.0%
TTTATAAGCTTGTCAATGAC+TGG - chr4_1:46464244-46464263 Msa0550890:intron 30.0%
!! TATTGGTAACAACTTTTCCT+TGG - chr4_1:46464293-46464312 Msa0550890:intron 30.0%
TTTCTTGAACATATTCTGAC+AGG - chr4_1:46464484-46464503 Msa0550890:intron 30.0%
TTCTTGAACATATTCTGACA+GGG - chr4_1:46464485-46464504 Msa0550890:intron 30.0%
AGGGACATATTGTGTTTATT+AGG - chr4_1:46464504-46464523 Msa0550890:intron 30.0%
! GAATTGTATCGACATTAAGA+TGG + chr4_1:46464728-46464747 None:intergenic 30.0%
CGCAAAAAGATATATGTTCA+AGG + chr4_1:46464831-46464850 None:intergenic 30.0%
TACCAAATAACTATACCCAT+TGG + chr4_1:46464867-46464886 None:intergenic 30.0%
!! GGTAAACCTTTCTACTTTTA+TGG - chr4_1:46464883-46464902 Msa0550890:CDS 30.0%
!! AAACCTTTCTACTTTTATGG+TGG - chr4_1:46464886-46464905 Msa0550890:CDS 30.0%
!! TACTCTCCTCTATTTCTAAA+TGG + chr4_1:46464917-46464936 None:intergenic 30.0%
AGTAAATATGTTCTCGTTCT+TGG - chr4_1:46464933-46464952 Msa0550890:CDS 30.0%
! TCAAAAATGACTTGTAAGGT+AGG - chr4_1:46464965-46464984 Msa0550890:exon 30.0%
AGATGTGTTCTTCTTGAGAA+GGG + chr4_1:46458464-46458483 None:intergenic 35.0%
TAGATGTGTTCTTCTTGAGA+AGG + chr4_1:46458465-46458484 None:intergenic 35.0%
AGAAGAAGAAGAAGAAGTGA+AGG - chr4_1:46458621-46458640 Msa0550890:three_prime_UTR 35.0%
GAGTATATGGATTCAGATGA+AGG - chr4_1:46458657-46458676 Msa0550890:three_prime_UTR 35.0%
GTATCAATGAGACTCATCAA+CGG + chr4_1:46458730-46458749 None:intergenic 35.0%
!! TCAATTGAACTTGCTGCTTT+AGG - chr4_1:46458772-46458791 Msa0550890:CDS 35.0%
! GTCGATTGCTACTTCAAATA+TGG - chr4_1:46458924-46458943 Msa0550890:CDS 35.0%
TGCATTTCTGAACAGATAGT+TGG - chr4_1:46459021-46459040 Msa0550890:intron 35.0%
! AGTTGGTATTCAAATATGGG+TGG - chr4_1:46459038-46459057 Msa0550890:intron 35.0%
ACTGGTTGAGATGATACATA+TGG - chr4_1:46459071-46459090 Msa0550890:CDS 35.0%
!! GGCTAATGATCTAAGGTTTT+AGG - chr4_1:46459092-46459111 Msa0550890:CDS 35.0%
! TAGGTAGAAATGTGGTGTTT+TGG - chr4_1:46459111-46459130 Msa0550890:intron 35.0%
CAAGTTAATCATCAGGATTC+TGG + chr4_1:46459149-46459168 None:intergenic 35.0%
GCAACAACAAGTTAATCATC+AGG + chr4_1:46459156-46459175 None:intergenic 35.0%
ACTCTCCTATCAAGTTAACT+TGG + chr4_1:46459218-46459237 None:intergenic 35.0%
! AAGTTAACTTGATAGGAGAG+TGG - chr4_1:46459217-46459236 Msa0550890:intron 35.0%
! AGTTAACTTGATAGGAGAGT+GGG - chr4_1:46459218-46459237 Msa0550890:intron 35.0%
ACAATTGATGGGAAGATTGT+TGG - chr4_1:46459332-46459351 Msa0550890:intron 35.0%
! CCAAACTGATCTTAGGTTTT+TGG + chr4_1:46459720-46459739 None:intergenic 35.0%
CCAAAAACCTAAGATCAGTT+TGG - chr4_1:46459717-46459736 Msa0550890:intron 35.0%
TAAACTCCCAAACTGATCTT+AGG + chr4_1:46459727-46459746 None:intergenic 35.0%
ATCAGTTTGGGAGTTTAAGA+GGG - chr4_1:46459730-46459749 Msa0550890:intron 35.0%
GGAAAAAAGGAATGAGAAAG+TGG - chr4_1:46459767-46459786 Msa0550890:intron 35.0%
!!! CTGCAATTTTCAAGTTCATG+GGG + chr4_1:46459859-46459878 None:intergenic 35.0%
!!! CACTGCAATTTTCAAGTTCA+TGG + chr4_1:46459861-46459880 None:intergenic 35.0%
!!! TTTTTTTCTCTCTTTCGTCC+AGG - chr4_1:46460092-46460111 Msa0550890:intron 35.0%
ATAAAGGAATTGGAGGTCAT+GGG + chr4_1:46460124-46460143 None:intergenic 35.0%
TAATTTGAGCCAAGGGATAA+AGG + chr4_1:46460140-46460159 None:intergenic 35.0%
GTTCAACTAATTTGAGCCAA+GGG + chr4_1:46460147-46460166 None:intergenic 35.0%
AGTTCAACTAATTTGAGCCA+AGG + chr4_1:46460148-46460167 None:intergenic 35.0%
! CAAATGCTTTAGGTTCTGTT+TGG + chr4_1:46460203-46460222 None:intergenic 35.0%
TGGTATGGCAAAAAATTCAC+TGG + chr4_1:46460416-46460435 None:intergenic 35.0%
ATACTTACTCATGAAAGGCA+GGG + chr4_1:46460481-46460500 None:intergenic 35.0%
!!! CTTTTTATTGGGTTAGCATG+TGG - chr4_1:46460547-46460566 Msa0550890:CDS 35.0%
!!! ACCAGTTGTGTCCATTTTTT+GGG - chr4_1:46460641-46460660 Msa0550890:intron 35.0%
AGAACAATTCATCAGACATG+GGG + chr4_1:46460708-46460727 None:intergenic 35.0%
! AGTGTTACTAAATCAAGCAG+AGG + chr4_1:46461047-46461066 None:intergenic 35.0%
TCTGCTTGATTTAGTAACAC+TGG - chr4_1:46461046-46461065 Msa0550890:intron 35.0%
TCTTGGTATGAAGGATTCTT+GGG - chr4_1:46461591-46461610 Msa0550890:intron 35.0%
! ACATAATGCACGAGTTTGTT+CGG + chr4_1:46461738-46461757 None:intergenic 35.0%
AACAACCTGAAAACAAGAAG+GGG + chr4_1:46462001-46462020 None:intergenic 35.0%
CAACAACCTGAAAACAAGAA+GGG + chr4_1:46462002-46462021 None:intergenic 35.0%
!!! TTCTTGTTTTCAGGTTGTTG+CGG - chr4_1:46462002-46462021 Msa0550890:intron 35.0%
TGTGTTTGTAGCTCTTTATC+TGG - chr4_1:46462172-46462191 Msa0550890:intron 35.0%
GAAAATTTGATAGACAGCGA+AGG + chr4_1:46462346-46462365 None:intergenic 35.0%
GCATGACCTAAAATAAGAGT+TGG + chr4_1:46462399-46462418 None:intergenic 35.0%
GCATAAATGATTGAGCAGTT+TGG + chr4_1:46462465-46462484 None:intergenic 35.0%
! GGTTGATGTATGGAGTAAAT+CGG - chr4_1:46462488-46462507 Msa0550890:intron 35.0%
ATCTCTCCAACCTTATATAC+AGG - chr4_1:46462554-46462573 Msa0550890:intron 35.0%
GATCATCCTGTATATAAGGT+TGG + chr4_1:46462563-46462582 None:intergenic 35.0%
TTATAGTATCTTGACAGGCT+CGG - chr4_1:46462748-46462767 Msa0550890:CDS 35.0%
CTAAGGTCTCTTCTAACTAT+TGG - chr4_1:46462777-46462796 Msa0550890:CDS 35.0%
AAAATGTAGGGGAATAACCA+AGG + chr4_1:46462846-46462865 None:intergenic 35.0%
GATCAGGTGTAAAAATGTAG+GGG + chr4_1:46462857-46462876 None:intergenic 35.0%
CTGATCAGGTGTAAAAATGT+AGG + chr4_1:46462859-46462878 None:intergenic 35.0%
! CATTTTTACACCTGATCAGA+TGG - chr4_1:46462860-46462879 Msa0550890:intron 35.0%
AACAGAAGCCTTAATTCCAA+AGG + chr4_1:46462943-46462962 None:intergenic 35.0%
!! TCCATACTTTTTAGCGCTAA+TGG - chr4_1:46463010-46463029 Msa0550890:intron 35.0%
ACCATTAGCGCTAAAAAGTA+TGG + chr4_1:46463014-46463033 None:intergenic 35.0%
!! TGTTGGTAGTCTTATTCAGT+TGG - chr4_1:46463124-46463143 Msa0550890:intron 35.0%
CATTCTACTAGACCATTACT+TGG - chr4_1:46463154-46463173 Msa0550890:intron 35.0%
!! AACGTATTAGGCTTTTCAAG+AGG + chr4_1:46463221-46463240 None:intergenic 35.0%
AAGCCTAATACGTTTCACAT+AGG - chr4_1:46463227-46463246 Msa0550890:intron 35.0%
GAACCTATGTGAAACGTATT+AGG + chr4_1:46463233-46463252 None:intergenic 35.0%
AGGTACAAGCCTACTTATTT+AGG - chr4_1:46463320-46463339 Msa0550890:intron 35.0%
GCCTACTTATTTAGGTAGAA+TGG - chr4_1:46463328-46463347 Msa0550890:intron 35.0%
CCCATTCTACCTAAATAAGT+AGG + chr4_1:46463332-46463351 None:intergenic 35.0%
GCACCTAACTCTTAACTATT+TGG - chr4_1:46463361-46463380 Msa0550890:intron 35.0%
!! ACTTGATCTTTTAGGAGAAC+TGG + chr4_1:46463410-46463429 None:intergenic 35.0%
! GATCAAGTTGTTATCAAGAG+AGG - chr4_1:46463422-46463441 Msa0550890:intron 35.0%
!! GTTTTACATTGATAACTCGG+AGG - chr4_1:46463444-46463463 Msa0550890:intron 35.0%
! TTTACATTGATAACTCGGAG+GGG - chr4_1:46463446-46463465 Msa0550890:intron 35.0%
! TAAAGGGAAGTAATGGAAGT+CGG + chr4_1:46463532-46463551 None:intergenic 35.0%
TCCCTTTAAATTCAATAGCC+CGG - chr4_1:46463544-46463563 Msa0550890:intron 35.0%
ACCGGGCTATTGAATTTAAA+GGG + chr4_1:46463548-46463567 None:intergenic 35.0%
AACCGGGCTATTGAATTTAA+AGG + chr4_1:46463549-46463568 None:intergenic 35.0%
! TATCAGATCTTGTTTCAGCT+TGG - chr4_1:46463794-46463813 Msa0550890:intron 35.0%
GATGTGAAACTTACACTTGA+GGG - chr4_1:46463932-46463951 Msa0550890:intron 35.0%
ATGTGAAACTTACACTTGAG+GGG - chr4_1:46463933-46463952 Msa0550890:intron 35.0%
GTCTCATATCAACTATGAAC+GGG - chr4_1:46463986-46464005 Msa0550890:intron 35.0%
ACTATGAACGGGATAAATGT+TGG - chr4_1:46463997-46464016 Msa0550890:intron 35.0%
CATCTCCACTCAAAAGTTTA+AGG + chr4_1:46464059-46464078 None:intergenic 35.0%
!! TAAACTTTTGAGTGGAGATG+TGG - chr4_1:46464059-46464078 Msa0550890:intron 35.0%
CAATAACAGGCTAATGATCT+AGG + chr4_1:46464105-46464124 None:intergenic 35.0%
ATAAGTTGTCATGACTGTTG+GGG + chr4_1:46464146-46464165 None:intergenic 35.0%
TATTTATCCAGGTTGCATGT+TGG - chr4_1:46464171-46464190 Msa0550890:intron 35.0%
!! ACTGGATGCTTTTGTTTGAA+TGG - chr4_1:46464262-46464281 Msa0550890:intron 35.0%
! TCCCAATGGCATTTTATACT+CGG - chr4_1:46464561-46464580 Msa0550890:intron 35.0%
TCCGAGTATAAAATGCCATT+GGG + chr4_1:46464565-46464584 None:intergenic 35.0%
TTCCGAGTATAAAATGCCAT+TGG + chr4_1:46464566-46464585 None:intergenic 35.0%
AGTTGAAGACTGCATAGTTT+AGG - chr4_1:46464611-46464630 Msa0550890:CDS 35.0%
GGAGTTCCATTTATAGTTCA+TGG - chr4_1:46464632-46464651 Msa0550890:CDS 35.0%
ATTCAGTACTCAGAAACTAC+AGG - chr4_1:46464744-46464763 Msa0550890:CDS 35.0%
! TATCTTTTTGCGATCAAGTG+TGG - chr4_1:46464839-46464858 Msa0550890:CDS 35.0%
TGCCAATGGGTATAGTTATT+TGG - chr4_1:46464862-46464881 Msa0550890:CDS 35.0%
AAGCCACCATAAAAGTAGAA+AGG + chr4_1:46464892-46464911 None:intergenic 35.0%
! GCTTTGCCATTTAGAAATAG+AGG - chr4_1:46464908-46464927 Msa0550890:CDS 35.0%
ATGTTCTCGTTCTTGGAATT+TGG - chr4_1:46464940-46464959 Msa0550890:CDS 35.0%
TGTTCTCGTTCTTGGAATTT+GGG - chr4_1:46464941-46464960 Msa0550890:CDS 35.0%
! GGGTTCAAAAATGACTTGTA+AGG - chr4_1:46464961-46464980 Msa0550890:exon 35.0%
AAATCATCTGTAGATGGGAA+TGG + chr4_1:46465074-46465093 None:intergenic 35.0%
TCTGTAACATTGAAATCCGC+GGG + chr4_1:46458274-46458293 None:intergenic 40.0%
GTCTGTAACATTGAAATCCG+CGG + chr4_1:46458275-46458294 None:intergenic 40.0%
GGAAAGAGAAAGAAAACGAG+TGG + chr4_1:46458297-46458316 None:intergenic 40.0%
AATCGGGAAGATGACAGAAA+AGG + chr4_1:46458318-46458337 None:intergenic 40.0%
AGAAGAAGAAGTGAAGGAAC+TGG - chr4_1:46458627-46458646 Msa0550890:three_prime_UTR 40.0%
AACTGGTTGAGCAGAGTATA+TGG - chr4_1:46458644-46458663 Msa0550890:three_prime_UTR 40.0%
TTGTTTACTGGACCTGCTAT+TGG - chr4_1:46458688-46458707 Msa0550890:three_prime_UTR 40.0%
CATAACCAAAGACCAATAGC+AGG + chr4_1:46458703-46458722 None:intergenic 40.0%
!! GCTATTGGTCTTTGGTTATG+TGG - chr4_1:46458703-46458722 Msa0550890:three_prime_UTR 40.0%
CTCATTGATACTGCTGTTGT+TGG - chr4_1:46458739-46458758 Msa0550890:CDS 40.0%
TGTATCATCTCAACCAGTGT+GGG + chr4_1:46459069-46459088 None:intergenic 40.0%
ATGTATCATCTCAACCAGTG+TGG + chr4_1:46459070-46459089 None:intergenic 40.0%
TTGTTGCTCTCTCTGTTTCA+CGG - chr4_1:46459169-46459188 Msa0550890:intron 40.0%
! TTCACGGATTGTCGAACAAA+TGG - chr4_1:46459185-46459204 Msa0550890:intron 40.0%
! CAGAGCCAAGTTAACTTGAT+AGG - chr4_1:46459210-46459229 Msa0550890:intron 40.0%
GATCAGTTTGGGAGTTTAAG+AGG - chr4_1:46459729-46459748 Msa0550890:intron 40.0%
TCAGTTTGGGAGTTTAAGAG+GGG - chr4_1:46459731-46459750 Msa0550890:intron 40.0%
GAATGAGAAAGTGGGATATG+TGG - chr4_1:46459776-46459795 Msa0550890:intron 40.0%
GATAAAGGAATTGGAGGTCA+TGG + chr4_1:46460125-46460144 None:intergenic 40.0%
GACCTATATACACCCAACAA+TGG - chr4_1:46460310-46460329 Msa0550890:CDS 40.0%
TGCCATTGTTGGGTGTATAT+AGG + chr4_1:46460315-46460334 None:intergenic 40.0%
! TTTTTGCCATACCACCTCTA+TGG - chr4_1:46460422-46460441 Msa0550890:intron 40.0%
ATAAAGCCATAGAGGTGGTA+TGG + chr4_1:46460431-46460450 None:intergenic 40.0%
TACTTACTCATGAAAGGCAG+GGG + chr4_1:46460480-46460499 None:intergenic 40.0%
CATACTTACTCATGAAAGGC+AGG + chr4_1:46460482-46460501 None:intergenic 40.0%
!!! GACCAGTTGTGTCCATTTTT+TGG - chr4_1:46460640-46460659 Msa0550890:intron 40.0%
TCCCAAAAAATGGACACAAC+TGG + chr4_1:46460645-46460664 None:intergenic 40.0%
! TTGCCCTTTTCAGCTTTTAC+TGG - chr4_1:46460732-46460751 Msa0550890:intron 40.0%
GGTCCAGTAAAAGCTGAAAA+GGG + chr4_1:46460738-46460757 None:intergenic 40.0%
TGGTCCAGTAAAAGCTGAAA+AGG + chr4_1:46460739-46460758 None:intergenic 40.0%
TGGACATAAGTATTAGCTGC+GGG + chr4_1:46460780-46460799 None:intergenic 40.0%
CTGGACATAAGTATTAGCTG+CGG + chr4_1:46460781-46460800 None:intergenic 40.0%
TTGGTATTAGATTCGAGGGT+TGG - chr4_1:46461076-46461095 Msa0550890:CDS 40.0%
!! CATGGCCTTGTTTACTTGTT+GGG - chr4_1:46461099-46461118 Msa0550890:intron 40.0%
ATCGACCCAACAAGTAAACA+AGG + chr4_1:46461107-46461126 None:intergenic 40.0%
ATGTTTGCACCTTGCACTTT+GGG + chr4_1:46461132-46461151 None:intergenic 40.0%
TATGTTTGCACCTTGCACTT+TGG + chr4_1:46461133-46461152 None:intergenic 40.0%
TAGGCATTAAGAACAGAGAG+AGG + chr4_1:46461413-46461432 None:intergenic 40.0%
CAAGACTGCATGAAAGAATG+TGG + chr4_1:46461576-46461595 None:intergenic 40.0%
CACATTCTTTCATGCAGTCT+TGG - chr4_1:46461574-46461593 Msa0550890:intron 40.0%
TTCATGCAGTCTTGGTATGA+AGG - chr4_1:46461582-46461601 Msa0550890:intron 40.0%
GTCTTGGTATGAAGGATTCT+TGG - chr4_1:46461590-46461609 Msa0550890:intron 40.0%
CTTGGTATGAAGGATTCTTG+GGG - chr4_1:46461592-46461611 Msa0550890:intron 40.0%
GCTGCTGCCAGTATTATAAA+TGG - chr4_1:46461631-46461650 Msa0550890:CDS 40.0%
TGTGCAGATACTTAGGCTAT+GGG - chr4_1:46461671-46461690 Msa0550890:CDS 40.0%
!!! TTACACCCCTTCTTGTTTTC+AGG - chr4_1:46461993-46462012 Msa0550890:intron 40.0%
GCAACAACCTGAAAACAAGA+AGG + chr4_1:46462003-46462022 None:intergenic 40.0%
AGCCAAACTCTAAACGAGAA+GGG - chr4_1:46462036-46462055 Msa0550890:intron 40.0%
! ATCCCTTCTCGTTTAGAGTT+TGG + chr4_1:46462041-46462060 None:intergenic 40.0%
AAATTCCTTCCCTGAAGGAA+TGG + chr4_1:46462082-46462101 None:intergenic 40.0%
ACTGCTCAATCATTTATGCC+TGG - chr4_1:46462466-46462485 Msa0550890:intron 40.0%
CTGCTCAATCATTTATGCCT+GGG - chr4_1:46462467-46462486 Msa0550890:intron 40.0%
!! TTTATGCCTGGGTTGATGTA+TGG - chr4_1:46462478-46462497 Msa0550890:intron 40.0%
TTTACTCCATACATCAACCC+AGG + chr4_1:46462487-46462506 None:intergenic 40.0%
CTAACTATTGGAGCTGTACT+CGG - chr4_1:46462789-46462808 Msa0550890:CDS 40.0%
TAACTATTGGAGCTGTACTC+GGG - chr4_1:46462790-46462809 Msa0550890:CDS 40.0%
TTGTTGGAACATCTGTTCCT+TGG - chr4_1:46462826-46462845 Msa0550890:intron 40.0%
TAATTCAAGAACTGACCTCC+TGG + chr4_1:46462890-46462909 None:intergenic 40.0%
GGAATTAAGGCTTCTGTTAG+TGG - chr4_1:46462945-46462964 Msa0550890:intron 40.0%
!! TTAGGCTTTTCAAGAGGCTT+TGG + chr4_1:46463215-46463234 None:intergenic 40.0%
TACGTTTCACATAGGTTCCA+TGG - chr4_1:46463235-46463254 Msa0550890:intron 40.0%
!! CTTTTAGGAGAACTGGATCT+TGG + chr4_1:46463403-46463422 None:intergenic 40.0%
AGATCTGATACCCACTTGTT+GGG + chr4_1:46463784-46463803 None:intergenic 40.0%
AAGATCTGATACCCACTTGT+TGG + chr4_1:46463785-46463804 None:intergenic 40.0%
TGTGTCGAAAGTCTTTCTAG+CGG - chr4_1:46463853-46463872 Msa0550890:intron 40.0%
! TTAGGAGGCGTATTTCGTTA+GGG - chr4_1:46463881-46463900 Msa0550890:intron 40.0%
TGTAACAACGGTGCAAGTAT+AGG - chr4_1:46463910-46463929 Msa0550890:intron 40.0%
GGATGTGAAACTTACACTTG+AGG - chr4_1:46463931-46463950 Msa0550890:intron 40.0%
CTATATTTGCTTATGCAGGC+TGG - chr4_1:46464208-46464227 Msa0550890:intron 40.0%
!!! ACAACTTTTCCTTGGTTTGC+TGG - chr4_1:46464301-46464320 Msa0550890:intron 40.0%
GATCTGCATCGAGGTAAATT+GGG + chr4_1:46464366-46464385 None:intergenic 40.0%
CAGATCCTATCTAGCAGATA+TGG - chr4_1:46464380-46464399 Msa0550890:intron 40.0%
GCAAACCATATCTGCTAGAT+AGG + chr4_1:46464388-46464407 None:intergenic 40.0%
! TCTAGCAGATATGGTTTGCA+AGG - chr4_1:46464389-46464408 Msa0550890:CDS 40.0%
TTTCCCTTGCTGGATTTCAA+TGG - chr4_1:46464420-46464439 Msa0550890:CDS 40.0%
TTCCCTTGCTGGATTTCAAT+GGG - chr4_1:46464421-46464440 Msa0550890:CDS 40.0%
TACCCATTGAAATCCAGCAA+GGG + chr4_1:46464426-46464445 None:intergenic 40.0%
TTACCCATTGAAATCCAGCA+AGG + chr4_1:46464427-46464446 None:intergenic 40.0%
TTGCTGGATTTCAATGGGTA+AGG - chr4_1:46464426-46464445 Msa0550890:CDS 40.0%
AAATGCCATTGGGAGATAGA+AGG + chr4_1:46464555-46464574 None:intergenic 40.0%
! TCAACTTTTGCAGCTCATAC+TGG + chr4_1:46464597-46464616 None:intergenic 40.0%
GAGTTGTATCGGAAACTAAG+CGG - chr4_1:46464771-46464790 Msa0550890:CDS 40.0%
AGTTGTATCGGAAACTAAGC+GGG - chr4_1:46464772-46464791 Msa0550890:CDS 40.0%
AAGATATATGTTCAAGGCGG+TGG + chr4_1:46464825-46464844 None:intergenic 40.0%
! TGACTTGTAAGGTAGGAATG+TGG - chr4_1:46464972-46464991 Msa0550890:exon 40.0%
TCTTCTTGAGAAGGGAGGAT+GGG + chr4_1:46458456-46458475 None:intergenic 45.0%
TTCTTCTTGAGAAGGGAGGA+TGG + chr4_1:46458457-46458476 None:intergenic 45.0%
TGTGTTCTTCTTGAGAAGGG+AGG + chr4_1:46458461-46458480 None:intergenic 45.0%
GCATTATTACATCCTCCAGC+CGG - chr4_1:46458503-46458522 Msa0550890:three_prime_UTR 45.0%
CTTCTTCTTCAACACACTCG+TGG + chr4_1:46458609-46458628 None:intergenic 45.0%
GATACTGCTGTTGTTGGTCA+AGG - chr4_1:46458745-46458764 Msa0550890:CDS 45.0%
AACCTGTTTAGCAAGTGCAG+TGG + chr4_1:46458953-46458972 None:intergenic 45.0%
GTAATGTAGTCGTTGCTCGT+TGG - chr4_1:46459270-46459289 Msa0550890:intron 45.0%
! CGTTGCTCGTTGGTTAGTAA+TGG - chr4_1:46459280-46459299 Msa0550890:intron 45.0%
! TGCTTAGCCTTCTATCGACT+AGG - chr4_1:46459367-46459386 Msa0550890:intron 45.0%
GTCAGTTCCTAGTCGATAGA+AGG + chr4_1:46459377-46459396 None:intergenic 45.0%
AGATGTGGGTAGACCTTGTT+GGG - chr4_1:46459610-46459629 Msa0550890:intron 45.0%
TGATGTCCAACTCACTTGTG+TGG + chr4_1:46459689-46459708 None:intergenic 45.0%
TTTGGGAGTTTAAGAGGGGA+GGG - chr4_1:46459735-46459754 Msa0550890:intron 45.0%
TGAGAAAGTGGGATATGTGG+AGG - chr4_1:46459779-46459798 Msa0550890:intron 45.0%
GAGAAAGTGGGATATGTGGA+GGG - chr4_1:46459780-46459799 Msa0550890:intron 45.0%
CCAAGGGATAAAGGAATTGG+AGG + chr4_1:46460131-46460150 None:intergenic 45.0%
CCTCCAATTCCTTTATCCCT+TGG - chr4_1:46460128-46460147 Msa0550890:intron 45.0%
GAGCCAAGGGATAAAGGAAT+TGG + chr4_1:46460134-46460153 None:intergenic 45.0%
! TTTAGGTTCTGTTTGGGAGG+GGG + chr4_1:46460196-46460215 None:intergenic 45.0%
! CTTTAGGTTCTGTTTGGGAG+GGG + chr4_1:46460197-46460216 None:intergenic 45.0%
! GCTTTAGGTTCTGTTTGGGA+GGG + chr4_1:46460198-46460217 None:intergenic 45.0%
! TGCTTTAGGTTCTGTTTGGG+AGG + chr4_1:46460199-46460218 None:intergenic 45.0%
ATCCTCAGCTTGCCATTGTT+GGG + chr4_1:46460325-46460344 None:intergenic 45.0%
TATCCTCAGCTTGCCATTGT+TGG + chr4_1:46460326-46460345 None:intergenic 45.0%
TGTGCATAAAGCCATAGAGG+TGG + chr4_1:46460436-46460455 None:intergenic 45.0%
CTGTGTGCATAAAGCCATAG+AGG + chr4_1:46460439-46460458 None:intergenic 45.0%
!! TATTGGGTTAGCATGTGGCT+TGG - chr4_1:46460552-46460571 Msa0550890:CDS 45.0%
CAATTCATCAGACATGGGGT+AGG + chr4_1:46460704-46460723 None:intergenic 45.0%
CGCAGCTAATACTTATGTCC+AGG - chr4_1:46460779-46460798 Msa0550890:intron 45.0%
! ATTAGATTCGAGGGTTGGCA+TGG - chr4_1:46461081-46461100 Msa0550890:CDS 45.0%
!! GCATGGCCTTGTTTACTTGT+TGG - chr4_1:46461098-46461117 Msa0550890:CDS 45.0%
CTGTGCAGATACTTAGGCTA+TGG - chr4_1:46461670-46461689 Msa0550890:CDS 45.0%
TACTTAGGCTATGGGATTGC+TGG - chr4_1:46461679-46461698 Msa0550890:CDS 45.0%
ACTTAGGCTATGGGATTGCT+GGG - chr4_1:46461680-46461699 Msa0550890:CDS 45.0%
! CGAGTTTGTTCGGCATACTT+GGG + chr4_1:46461728-46461747 None:intergenic 45.0%
! ACGAGTTTGTTCGGCATACT+TGG + chr4_1:46461729-46461748 None:intergenic 45.0%
GAGCCAAACTCTAAACGAGA+AGG - chr4_1:46462035-46462054 Msa0550890:intron 45.0%
TTTGCCTTCACCATTCCTTC+AGG - chr4_1:46462069-46462088 Msa0550890:intron 45.0%
TTGCCTTCACCATTCCTTCA+GGG - chr4_1:46462070-46462089 Msa0550890:intron 45.0%
GACAGAAATTCCTTCCCTGA+AGG + chr4_1:46462087-46462106 None:intergenic 45.0%
! GATTGAGCAGTTTGGGATAG+AGG + chr4_1:46462457-46462476 None:intergenic 45.0%
!!! CTGTACTCGGGTTGCTTTTT+GGG - chr4_1:46462802-46462821 Msa0550890:CDS 45.0%
!!! GGGTTGCTTTTTGGGATTGT+TGG - chr4_1:46462810-46462829 Msa0550890:CDS 45.0%
ACCTGATCAGATGGTTATCC+AGG - chr4_1:46462869-46462888 Msa0550890:intron 45.0%
TCCTGGATAACCATCTGATC+AGG + chr4_1:46462873-46462892 None:intergenic 45.0%
TGATCAGATGGTTATCCAGG+AGG - chr4_1:46462872-46462891 Msa0550890:intron 45.0%
TTCTAGCGACTCAAGTGCAA+AGG + chr4_1:46463299-46463318 None:intergenic 45.0%
TGCACTTGAGTCGCTAGAAA+AGG - chr4_1:46463300-46463319 Msa0550890:intron 45.0%
! ATCTGATACCCACTTGTTGG+GGG + chr4_1:46463782-46463801 None:intergenic 45.0%
! GATCTGATACCCACTTGTTG+GGG + chr4_1:46463783-46463802 None:intergenic 45.0%
! CAGATCTTGTTTCAGCTTGG+CGG - chr4_1:46463797-46463816 Msa0550890:intron 45.0%
! AGATCTTGTTTCAGCTTGGC+GGG - chr4_1:46463798-46463817 Msa0550890:intron 45.0%
! GTCTTTCTAGCGGTGTAGTT+AGG - chr4_1:46463863-46463882 Msa0550890:intron 45.0%
! TTTCTAGCGGTGTAGTTAGG+AGG - chr4_1:46463866-46463885 Msa0550890:intron 45.0%
! GTTAGGAGGCGTATTTCGTT+AGG - chr4_1:46463880-46463899 Msa0550890:intron 45.0%
! ACACTTGAGGGGCATATTCT+TGG - chr4_1:46463944-46463963 Msa0550890:intron 45.0%
! CACTTGAGGGGCATATTCTT+GGG - chr4_1:46463945-46463964 Msa0550890:intron 45.0%
TTCTTGGGTTCAAGTGTGAG+TGG - chr4_1:46463960-46463979 Msa0550890:intron 45.0%
ACAAGAACCAACATGCAACC+TGG + chr4_1:46464181-46464200 None:intergenic 45.0%
ATTTGCTTATGCAGGCTGGA+TGG - chr4_1:46464212-46464231 Msa0550890:intron 45.0%
TTTGCTTATGCAGGCTGGAT+GGG - chr4_1:46464213-46464232 Msa0550890:intron 45.0%
CTATGTACACCAGCAAACCA+AGG + chr4_1:46464313-46464332 None:intergenic 45.0%
GGATCTGCATCGAGGTAAAT+TGG + chr4_1:46464367-46464386 None:intergenic 45.0%
! GATATGGTTTGCAAGGCTGT+TGG - chr4_1:46464396-46464415 Msa0550890:CDS 45.0%
GGATTTCAATGGGTAAGGCT+CGG - chr4_1:46464431-46464450 Msa0550890:CDS 45.0%
!! CTACAGGTGCTGAGTTGTAT+CGG - chr4_1:46464760-46464779 Msa0550890:CDS 45.0%
GTTGTATCGGAAACTAAGCG+GGG - chr4_1:46464773-46464792 Msa0550890:CDS 45.0%
!!! AATTGTTTTATTTTTTTAAA+TGG - chr4_1:46460033-46460052 Msa0550890:intron 5.0%
!! TTTAATAATATTATAACTAT+TGG - chr4_1:46461522-46461541 Msa0550890:intron 5.0%
!! TTAATAATATTATAACTATT+GGG - chr4_1:46461523-46461542 Msa0550890:intron 5.0%
! GGAGGAAATGAAGAGGTACG+TGG + chr4_1:46458435-46458454 None:intergenic 50.0%
GAGGATGGGAGGAAATGAAG+AGG + chr4_1:46458442-46458461 None:intergenic 50.0%
ATTACATCCTCCAGCCGGAA+CGG - chr4_1:46458508-46458527 Msa0550890:three_prime_UTR 50.0%
AGAACTTGAAGCGACCGTTC+CGG + chr4_1:46458525-46458544 None:intergenic 50.0%
!! CTGGACCTGCTATTGGTCTT+TGG - chr4_1:46458695-46458714 Msa0550890:three_prime_UTR 50.0%
! TGCCACTGCACTTGCTAAAC+AGG - chr4_1:46458948-46458967 Msa0550890:CDS 50.0%
GAGATGTGGGTAGACCTTGT+TGG - chr4_1:46459609-46459628 Msa0550890:intron 50.0%
GTAGACCTTGTTGGGACTTC+CGG - chr4_1:46459618-46459637 Msa0550890:intron 50.0%
TAGACCTTGTTGGGACTTCC+GGG - chr4_1:46459619-46459638 Msa0550890:intron 50.0%
! GACGATCCACCCAGTGTTTT+AGG + chr4_1:46459648-46459667 None:intergenic 50.0%
GAGCAACCACACAAGTGAGT+TGG - chr4_1:46459680-46459699 Msa0550890:intron 50.0%
GTTTGGGAGTTTAAGAGGGG+AGG - chr4_1:46459734-46459753 Msa0550890:intron 50.0%
TTGGGAGTTTAAGAGGGGAG+GGG - chr4_1:46459736-46459755 Msa0550890:intron 50.0%
!! AGGGGAGGGCTTTGGAAAAA+AGG - chr4_1:46459754-46459773 Msa0550890:intron 50.0%
TGGGATATGTGGAGGGCTTT+GGG - chr4_1:46459787-46459806 Msa0550890:intron 50.0%
TGGGGAAACTCTGCACTATG+AGG + chr4_1:46459841-46459860 None:intergenic 50.0%
CTTAGGCTATGGGATTGCTG+GGG - chr4_1:46461681-46461700 Msa0550890:CDS 50.0%
CTTCCCTGAAGGAATGGTGA+AGG + chr4_1:46462076-46462095 None:intergenic 50.0%
CTTCACCATTCCTTCAGGGA+AGG - chr4_1:46462074-46462093 Msa0550890:intron 50.0%
!!! GCTGTACTCGGGTTGCTTTT+TGG - chr4_1:46462801-46462820 Msa0550890:CDS 50.0%
ATACCAGCAATGTTCCCTCC+AGG + chr4_1:46463055-46463074 None:intergenic 50.0%
! GATCTTGTTTCAGCTTGGCG+GGG - chr4_1:46463799-46463818 Msa0550890:intron 50.0%
! ATCTTGTTTCAGCTTGGCGG+GGG - chr4_1:46463800-46463819 Msa0550890:intron 50.0%
TCATGACTGTTGGGGAGTCT+GGG + chr4_1:46464138-46464157 None:intergenic 50.0%
GCTAGATAGGATCTGCATCG+AGG + chr4_1:46464375-46464394 None:intergenic 50.0%
TCGGAAACTAAGCGGGGAAA+TGG - chr4_1:46464779-46464798 Msa0550890:CDS 50.0%
CGGAAACTAAGCGGGGAAAT+GGG - chr4_1:46464780-46464799 Msa0550890:CDS 50.0%
GGAAACTAAGCGGGGAAATG+GGG - chr4_1:46464781-46464800 Msa0550890:CDS 50.0%
GAAACTAAGCGGGGAAATGG+GGG - chr4_1:46464782-46464801 Msa0550890:CDS 50.0%
! CGATCAAGTGTGGTGCCAAT+GGG - chr4_1:46464849-46464868 Msa0550890:CDS 50.0%
TCTTGAGAAGGGAGGATGGG+AGG + chr4_1:46458453-46458472 None:intergenic 55.0%
! ATGGGTGGTTAGTCCCACAC+TGG - chr4_1:46459053-46459072 Msa0550890:intron 55.0%
AGACCTTGTTGGGACTTCCG+GGG - chr4_1:46459620-46459639 Msa0550890:intron 55.0%
TTCCGGGGAGCCTAAAACAC+TGG - chr4_1:46459635-46459654 Msa0550890:intron 55.0%
TCCGGGGAGCCTAAAACACT+GGG - chr4_1:46459636-46459655 Msa0550890:intron 55.0%
!! ACCCAGTGTTTTAGGCTCCC+CGG + chr4_1:46459640-46459659 None:intergenic 55.0%
CACTGGGTGGATCGTCACAT+TGG - chr4_1:46459652-46459671 Msa0550890:intron 55.0%
GAGTTTAAGAGGGGAGGGGA+GGG - chr4_1:46459740-46459759 Msa0550890:intron 55.0%
GTGGGATATGTGGAGGGCTT+TGG - chr4_1:46459786-46459805 Msa0550890:intron 55.0%
!! GATATGTGGAGGGCTTTGGG+AGG - chr4_1:46459790-46459809 Msa0550890:intron 55.0%
CACCCAACAATGGCAAGCTG+AGG - chr4_1:46460320-46460339 Msa0550890:CDS 55.0%
! TTTGGTGCAACAACGCTCGC+AGG - chr4_1:46460598-46460617 Msa0550890:intron 55.0%
GGATTCTTGGGGACCCTTGA+AGG - chr4_1:46461603-46461622 Msa0550890:intron 55.0%
TTGGGGACCCTTGAAGGCTT+TGG - chr4_1:46461609-46461628 Msa0550890:intron 55.0%
GCAGCAGCCAAAGCCTTCAA+GGG + chr4_1:46461619-46461638 None:intergenic 55.0%
ATGGTCACACCCGCAACTGT+TGG - chr4_1:46463029-46463048 Msa0550890:intron 55.0%
! ACCCACTTGTTGGGGGAGTA+CGG + chr4_1:46463775-46463794 None:intergenic 55.0%
GGGGAGTGACGAGCAATAAC+AGG + chr4_1:46464118-46464137 None:intergenic 55.0%
CATGACTGTTGGGGAGTCTG+GGG + chr4_1:46464137-46464156 None:intergenic 55.0%
GTCATGACTGTTGGGGAGTC+TGG + chr4_1:46464139-46464158 None:intergenic 55.0%
!!! GGCTGTTGGTTTTCCCTTGC+TGG - chr4_1:46464410-46464429 Msa0550890:CDS 55.0%
! GGGAGATAGAAGGCGCAGAA+GGG + chr4_1:46464545-46464564 None:intergenic 55.0%
! TGGGAGATAGAAGGCGCAGA+AGG + chr4_1:46464546-46464565 None:intergenic 55.0%
CTGCGCCTTCTATCTCCCAA+TGG - chr4_1:46464547-46464566 Msa0550890:intron 55.0%
! GCGATCAAGTGTGGTGCCAA+TGG - chr4_1:46464848-46464867 Msa0550890:CDS 55.0%
GGGGAGCCTAAAACACTGGG+TGG - chr4_1:46459639-46459658 Msa0550890:intron 60.0%
GGAGTTTAAGAGGGGAGGGG+AGG - chr4_1:46459739-46459758 Msa0550890:intron 60.0%
GGAGGTCATGGGCTCAAACC+TGG + chr4_1:46460113-46460132 None:intergenic 60.0%
AGGTTCTGTTTGGGAGGGGG+TGG + chr4_1:46460193-46460212 None:intergenic 60.0%
GGTCGATCGCCCAAAGTGCA+AGG - chr4_1:46461120-46461139 Msa0550890:intron 60.0%
GGCAGCAGCCAAAGCCTTCA+AGG + chr4_1:46461620-46461639 None:intergenic 60.0%
ATGGGATTGCTGGGGCTGCA+TGG - chr4_1:46461689-46461708 Msa0550890:CDS 60.0%
TGGGATTGCTGGGGCTGCAT+GGG - chr4_1:46461690-46461709 Msa0550890:CDS 60.0%
! TGGGGCTGCATGGGCTACAT+TGG - chr4_1:46461699-46461718 Msa0550890:CDS 60.0%
! GACAGGCTCGGTCGCTTCTA+AGG - chr4_1:46462760-46462779 Msa0550890:CDS 60.0%
TCCCTCCAGGCCAACAGTTG+CGG + chr4_1:46463042-46463061 None:intergenic 60.0%
TGGCCTGGAGGGAACATTGC+TGG - chr4_1:46463049-46463068 Msa0550890:intron 60.0%
TCCCGTACTCCCCCAACAAG+TGG - chr4_1:46463770-46463789 Msa0550890:intron 60.0%
! CCCACTTGTTGGGGGAGTAC+GGG + chr4_1:46463774-46463793 None:intergenic 60.0%
CCCGTACTCCCCCAACAAGT+GGG - chr4_1:46463771-46463790 Msa0550890:intron 60.0%
AAGCGGGGAAATGGGGGATG+TGG - chr4_1:46464788-46464807 Msa0550890:CDS 60.0%
AGCGGGGAAATGGGGGATGT+GGG - chr4_1:46464789-46464808 Msa0550890:CDS 60.0%
CTTGAAGCGACCGTTCCGGC+TGG + chr4_1:46458521-46458540 None:intergenic 65.0%
GCTCCCCGGAAGTCCCAACA+AGG + chr4_1:46459626-46459645 None:intergenic 65.0%
AAGAGGGGAGGGGAGGGCTT+TGG - chr4_1:46459746-46459765 Msa0550890:intron 65.0%
!! GTGGAGGGCTTTGGGAGGTG+AGG - chr4_1:46459795-46459814 Msa0550890:intron 65.0%
CACACCCGCAACTGTTGGCC+TGG - chr4_1:46463034-46463053 Msa0550890:intron 65.0%
! ACCCGCAACTGTTGGCCTGG+AGG - chr4_1:46463037-46463056 Msa0550890:intron 65.0%
CCCTCCAGGCCAACAGTTGC+GGG + chr4_1:46463041-46463060 None:intergenic 65.0%
! CCCGCAACTGTTGGCCTGGA+GGG - chr4_1:46463038-46463057 Msa0550890:intron 65.0%
GAAGCGACCGTTCCGGCTGG+AGG + chr4_1:46458518-46458537 None:intergenic 70.0%
! AGCTTGGCGGGGGAGCGTGA+GGG - chr4_1:46463810-46463829 Msa0550890:intron 70.0%
! CAGCTTGGCGGGGGAGCGTG+AGG - chr4_1:46463809-46463828 Msa0550890:intron 75.0%
! GCTTGGCGGGGGAGCGTGAG+GGG - chr4_1:46463811-46463830 Msa0550890:intron 75.0%
! CTTGGCGGGGGAGCGTGAGG+GGG - chr4_1:46463812-46463831 Msa0550890:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 46458260 46465095 46458260 ID=Msa0550890;Name=Msa0550890
chr4_1 mRNA 46458260 46465095 46458260 ID=Msa0550890-mRNA-1;Parent=Msa0550890;Name=Msa0550890-mRNA-1;_AED=0.32;_eAED=0.32;_QI=119|1|1|1|1|1|14|468|542
chr4_1 exon 46458260 46458829 46458260 ID=Msa0550890-mRNA-1:exon:12530;Parent=Msa0550890-mRNA-1
chr4_1 exon 46458913 46458972 46458913 ID=Msa0550890-mRNA-1:exon:12529;Parent=Msa0550890-mRNA-1
chr4_1 exon 46459058 46459129 46459058 ID=Msa0550890-mRNA-1:exon:12528;Parent=Msa0550890-mRNA-1
chr4_1 exon 46460285 46460362 46460285 ID=Msa0550890-mRNA-1:exon:12527;Parent=Msa0550890-mRNA-1
chr4_1 exon 46460462 46460590 46460462 ID=Msa0550890-mRNA-1:exon:12526;Parent=Msa0550890-mRNA-1
chr4_1 exon 46460833 46460943 46460833 ID=Msa0550890-mRNA-1:exon:12525;Parent=Msa0550890-mRNA-1
chr4_1 exon 46461049 46461117 46461049 ID=Msa0550890-mRNA-1:exon:12524;Parent=Msa0550890-mRNA-1
chr4_1 exon 46461203 46461340 46461203 ID=Msa0550890-mRNA-1:exon:12523;Parent=Msa0550890-mRNA-1
chr4_1 exon 46461626 46461764 46461626 ID=Msa0550890-mRNA-1:exon:12522;Parent=Msa0550890-mRNA-1
chr4_1 exon 46462214 46462269 46462214 ID=Msa0550890-mRNA-1:exon:12521;Parent=Msa0550890-mRNA-1
chr4_1 exon 46462555 46462610 46462555 ID=Msa0550890-mRNA-1:exon:12520;Parent=Msa0550890-mRNA-1
chr4_1 exon 46462736 46462844 46462736 ID=Msa0550890-mRNA-1:exon:12519;Parent=Msa0550890-mRNA-1
chr4_1 exon 46464386 46464480 46464386 ID=Msa0550890-mRNA-1:exon:12518;Parent=Msa0550890-mRNA-1
chr4_1 exon 46464562 46465095 46464562 ID=Msa0550890-mRNA-1:exon:12517;Parent=Msa0550890-mRNA-1
chr4_1 five_prime_UTR 46464977 46465095 46464977 ID=Msa0550890-mRNA-1:five_prime_utr;Parent=Msa0550890-mRNA-1
chr4_1 CDS 46464562 46464976 46464562 ID=Msa0550890-mRNA-1:cds;Parent=Msa0550890-mRNA-1
chr4_1 CDS 46464386 46464480 46464386 ID=Msa0550890-mRNA-1:cds;Parent=Msa0550890-mRNA-1
chr4_1 CDS 46462736 46462844 46462736 ID=Msa0550890-mRNA-1:cds;Parent=Msa0550890-mRNA-1
chr4_1 CDS 46462555 46462610 46462555 ID=Msa0550890-mRNA-1:cds;Parent=Msa0550890-mRNA-1
chr4_1 CDS 46462214 46462269 46462214 ID=Msa0550890-mRNA-1:cds;Parent=Msa0550890-mRNA-1
chr4_1 CDS 46461626 46461764 46461626 ID=Msa0550890-mRNA-1:cds;Parent=Msa0550890-mRNA-1
chr4_1 CDS 46461203 46461340 46461203 ID=Msa0550890-mRNA-1:cds;Parent=Msa0550890-mRNA-1
chr4_1 CDS 46461049 46461117 46461049 ID=Msa0550890-mRNA-1:cds;Parent=Msa0550890-mRNA-1
chr4_1 CDS 46460833 46460943 46460833 ID=Msa0550890-mRNA-1:cds;Parent=Msa0550890-mRNA-1
chr4_1 CDS 46460462 46460590 46460462 ID=Msa0550890-mRNA-1:cds;Parent=Msa0550890-mRNA-1
chr4_1 CDS 46460285 46460362 46460285 ID=Msa0550890-mRNA-1:cds;Parent=Msa0550890-mRNA-1
chr4_1 CDS 46459058 46459129 46459058 ID=Msa0550890-mRNA-1:cds;Parent=Msa0550890-mRNA-1
chr4_1 CDS 46458913 46458972 46458913 ID=Msa0550890-mRNA-1:cds;Parent=Msa0550890-mRNA-1
chr4_1 CDS 46458728 46458829 46458728 ID=Msa0550890-mRNA-1:cds;Parent=Msa0550890-mRNA-1
chr4_1 three_prime_UTR 46458260 46458727 46458260 ID=Msa0550890-mRNA-1:three_prime_utr;Parent=Msa0550890-mRNA-1
Gene Sequence

>Msa0550890

ATGGCACAAAAACTTTCACTAAACTTCAATCACACTTCACTACACTTGAATCGCCACGTACCTCTTCATTTCCTCCCATCCTCCCTTCTCAAGAAGAACACATCTATCCATTTAACAAAACAATGCATTATTACATCCTCCAGCCGGAACGGTCGCTTCAAGTTCTTAACAGCTTGCTTAGTTCAAAATAACGATGCCATACATGAATATGAAGAAAAAGTTCAAATCCACGAGTGTGTTGAAGAAGAAGAAGAAGAAGTGAAGGAACTGGTTGAGCAGAGTATATGGATTCAGATGAAGGAAATAGTATTGTTTACTGGACCTGCTATTGGTCTTTGGTTATGTGGACCGTTGATGAGTCTCATTGATACTGCTGTTGTTGGTCAAGGAAGTTCAATTGAACTTGCTGCTTTAGGTCCTGCTACTGTTTTTTGTGATTATTTGGGCTACTCGTTCATGTTTTTGTCGATTGCTACTTCAAATATGGTTGCCACTGCACTTGCTAAACAGAATAAGGAGGAAGTGCAGCATCACATATCTGTCTTGCTTTTTATTGGGTTAGCATGTGGCTTGGCGATGCTTTTTTTCACAAGATTATTTGGTGCAACAACGCTCGCAGCTTTTACTGGACCAAAGAATGTACATATAGTACCCGCAGCTAATACTTATGTCCAGATTCGAGGGTTGGCATGGCCTTGTTTACTTGTTGGGTCGATCGCCCAAAGTGCAAGTCTTGGTATGAAGGATTCTTGGGGACCCTTGAAGGCTTTGGCTGCTGCCAGTATTATAAATGGAATTGGTGATATAATTCTGTGCAGATACTTAGGCTATGGGATTGCTGGGGCTGCATGGGCTACATTGGCATCCCAAGTTGTTGCGGCGTATATGATGAGCCAAACTCTAAACGAGAAGGGATACAATGCATTTGCCTTCACCATTCCTTCAGGGAAGGAATTTCTGTCAATATTAAGTCTTGCTGCTCCTGTATTTGTGACATTGATGTTAAAGGTGGCTTTCTACTCTCTACTTATATATTTTGCTACATCAATGGGTACAAATAAAATGGCTGCTCATCAAGTCATGCTTCAGATCTACATGTTATGCACAATATGTGGTGAACCTCTATCCCAAACTGCTCAATCATTTATGCCTGGGTTGATGTATGGAGTAAATCGGAGTTTGATAAAGGCTCGGTCGCTTCTAAGGTCTCTTCTAACTATTGGAGCTGTACTCGGGTTGCTTTTTGGGATTGTTGGAACATCTGTTCCTTGGTTATTCCCCTACATTTTTACACCTGATCAGATGGTTATCCAGGAGATGCATAAGATACTGATTCCATACTTTTTAGCGCTAATGGTCACACCCGCAACTGTTGGCCTGGAGGGAACATTGCTGGCTGGATGGGATCTTAGATTTATAAGCTTGTCAATGACTGGATGCTTTTGTTTGAATGGTCTAATATTATTGATCCTATCTAGCAGATATGGTTTGCAAGGCTGTTGGTTTTCCCTTGCTGGATTTCAATGGGTTCGGTTTTCATCAGCCCTTCTGCGCCTTCTATCTCCCAATGGCATTTTATACTCGGAAGATATAAGCCAGTATGAGCTGCAAAAGTTGAAGACTGCATAG

Protein sequence

>Msa0550890

MAQKLSLNFNHTSLHLNRHVPLHFLPSSLLKKNTSIHLTKQCIITSSSRNGRFKFLTACLVQNNDAIHEYEEKVQIHECVEEEEEEVKELVEQSIWIQMKEIVLFTGPAIGLWLCGPLMSLIDTAVVGQGSSIELAALGPATVFCDYLGYSFMFLSIATSNMVATALAKQNKEEVQHHISVLLFIGLACGLAMLFFTRLFGATTLAAFTGPKNVHIVPAANTYVQIRGLAWPCLLVGSIAQSASLGMKDSWGPLKALAAASIINGIGDIILCRYLGYGIAGAAWATLASQVVAAYMMSQTLNEKGYNAFAFTIPSGKEFLSILSLAAPVFVTLMLKVAFYSLLIYFATSMGTNKMAAHQVMLQIYMLCTICGEPLSQTAQSFMPGLMYGVNRSLIKARSLLRSLLTIGAVLGLLFGIVGTSVPWLFPYIFTPDQMVIQEMHKILIPYFLALMVTPATVGLEGTLLAGWDLRFISLSMTGCFCLNGLILLILSSRYGLQGCWFSLAGFQWVRFSSALLRLLSPNGILYSEDISQYELQKLKTA*