AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0555210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0555210 MtrunA17_Chr4g0041041 97.568 370 9 0 1 370 17 386 0.0 751
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 112 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGTTTGTCTTACGTTAA+AGG 0.153196 4_1:-53062699 Msa0555210:three_prime_UTR
GGAAATGACAAAAGAGATTT+TGG 0.179922 4_1:-53065604 Msa0555210:CDS
TTTGGAGTCAGAAGTTTATA+AGG 0.209201 4_1:-53065586 Msa0555210:CDS
CTGAGCCACAGCTAGAAAAT+AGG 0.255514 4_1:+53064296 None:intergenic
ACTTGTTAGGAAGCTTTATT+TGG 0.269913 4_1:-53062882 Msa0555210:three_prime_UTR
GTGCTAGGCAAGTTCTTATA+AGG 0.277954 4_1:-53065757 Msa0555210:intron
TTGTTCTTTGGTTACTTGAA+TGG 0.305201 4_1:-53062847 Msa0555210:three_prime_UTR
ATAATCAAGAATAGGAAATT+AGG 0.319713 4_1:-53062821 Msa0555210:three_prime_UTR
CTGTGAACATTATCCAATCT+TGG 0.335914 4_1:-53062648 Msa0555210:three_prime_UTR
CGCAGATAATGCGTGACAAT+TGG 0.343858 4_1:-53064569 Msa0555210:CDS
GGAGTCTCTCCAGTCCATTT+TGG 0.347401 4_1:+53065842 None:intergenic
CTTGTATTCACAACCAAGAT+TGG 0.349803 4_1:+53062635 None:intergenic
TTCCTTTACTACATTCACTA+TGG 0.352084 4_1:+53063723 None:intergenic
CCTTCATCATATGCATGAAA+TGG 0.356221 4_1:+53065416 None:intergenic
GCCTTCTAAATCATTTGATC+TGG 0.362149 4_1:-53064199 Msa0555210:CDS
AACCAGCTTCCTTCAGTGTT+TGG 0.362900 4_1:+53063045 None:intergenic
GAAAGCTTGTAAGACCAAAA+TGG 0.374610 4_1:-53065856 Msa0555210:CDS
CGAGTACTACTTGACTGATA+TGG 0.380852 4_1:-53063069 Msa0555210:CDS
ACATTCACTATGGCTCTTGC+AGG 0.387189 4_1:+53063733 None:intergenic
GTTTGCTATGACAGATAATT+CGG 0.399971 4_1:-53063671 Msa0555210:intron
ACCTGTAGGACCTTTGACTT+TGG 0.401436 4_1:+53063562 None:intergenic
TCTAGCTGTGGCTCAGCATA+AGG 0.402145 4_1:-53064289 Msa0555210:CDS
TGCTCTTCATCAATGTAAAC+AGG 0.416989 4_1:+53063108 None:intergenic
TAAAATGGATACATGCAAAT+GGG 0.418740 4_1:-53064236 Msa0555210:CDS
ACCAGATCAAATGATTTAGA+AGG 0.419492 4_1:+53064198 None:intergenic
CTTCATAGCTACTAGCTTGA+AGG 0.422456 4_1:+53065882 None:intergenic
TAGAATGGATGAGCAGCTTA+AGG 0.425310 4_1:-53062737 Msa0555210:three_prime_UTR
GTCAGAAGTTTATAAGGAGT+TGG 0.427742 4_1:-53065580 Msa0555210:CDS
CCCTAGGCACGTGACTTTAA+CGG 0.438446 4_1:-53062994 Msa0555210:CDS
TCTGGTGTCTATTTCTTATG+TGG 0.442073 4_1:-53064181 Msa0555210:intron
TAGTGGTGGTGATGCCATGC+GGG 0.449233 4_1:+53065969 None:intergenic
ATAAAATGGATACATGCAAA+TGG 0.451046 4_1:-53064237 Msa0555210:CDS
CCATTTCATGCATATGATGA+AGG 0.452780 4_1:-53065416 Msa0555210:CDS
ATTAGGAATGACGTTTAAGA+AGG 0.453555 4_1:-53062804 Msa0555210:three_prime_UTR
CGTGCCTCAATGAAACATCT+TGG 0.456568 4_1:-53062967 Msa0555210:exon
CAAGTAGTACTCGTCAAGAA+AGG 0.463853 4_1:+53063079 None:intergenic
TGTTGGTGCCTTTGTGGTAG+TGG 0.466508 4_1:+53065952 None:intergenic
AATGGTGTATAATCAAGAAT+AGG 0.474995 4_1:-53062829 Msa0555210:three_prime_UTR
AGGAAGCATTCCGTCTCCTT+CGG 0.475832 4_1:-53063705 Msa0555210:CDS
GCATTCCGTCTCCTTCGGCC+TGG 0.478773 4_1:-53063700 Msa0555210:CDS
CAATCTTGGTTGTGAATACA+AGG 0.478952 4_1:-53062634 None:intergenic
TGTACTTTCGAATGTTAGAA+TGG 0.481450 4_1:-53062752 Msa0555210:three_prime_UTR
TGAGCCACAGCTAGAAAATA+GGG 0.482232 4_1:+53064297 None:intergenic
CTAGACATTGGATGTTCTGT+GGG 0.504597 4_1:-53064486 Msa0555210:CDS
CATTCACAAACATCTATGAT+TGG 0.507503 4_1:-53064516 Msa0555210:CDS
GCCAAAGTCAAAGGTCCTAC+AGG 0.510737 4_1:-53063563 Msa0555210:intron
ACGCCGTGTTGGTGCCTTTG+TGG 0.510870 4_1:+53065946 None:intergenic
TTATACTCTATCCTCAAGCT+TGG 0.513522 4_1:-53065779 Msa0555210:CDS
AGAATGGATGAGCAGCTTAA+GGG 0.514731 4_1:-53062736 Msa0555210:three_prime_UTR
AGCCATAGTGAATGTAGTAA+AGG 0.515798 4_1:-53063725 Msa0555210:CDS
GTCATAGCAAACGTGCCTCC+AGG 0.518839 4_1:+53063682 None:intergenic
GTGCCTCAATGAAACATCTT+GGG 0.519143 4_1:-53062966 Msa0555210:exon
CTTTAAAGCTATCTACTTCA+CGG 0.520876 4_1:-53062676 Msa0555210:three_prime_UTR
GCCGTTAAAGTCACGTGCCT+AGG 0.523421 4_1:+53062993 None:intergenic
TGCCTCCAGGCCGAAGGAGA+CGG 0.527581 4_1:+53063695 None:intergenic
CATTGACTTAGTAGCAGCCT+CGG 0.529201 4_1:+53064635 None:intergenic
CGAGGCTGCTACTAAGTCAA+TGG 0.529702 4_1:-53064634 Msa0555210:CDS
CGCTTCTTCTACTGATGAAG+CGG 0.534196 4_1:+53064593 None:intergenic
TTCATCAATGTAAACAGGAC+GGG 0.536290 4_1:+53063113 None:intergenic
CTTGTAAGACCAAAATGGAC+TGG 0.537470 4_1:-53065851 Msa0555210:CDS
TGAAGGGAATCTTACATGGC+TGG 0.540223 4_1:-53065399 Msa0555210:intron
AAGTAGTACTCGTCAAGAAA+GGG 0.541395 4_1:+53063080 None:intergenic
CCGTTAAAGTCACGTGCCTA+GGG 0.548980 4_1:+53062994 None:intergenic
TTCATAGCTACTAGCTTGAA+GGG 0.550261 4_1:+53065883 None:intergenic
AGCTTGAGGATAGAGTATAA+AGG 0.550336 4_1:+53065782 None:intergenic
TAAAGATGAAATTACAATCA+GGG 0.551499 4_1:+53065529 None:intergenic
TCACAATGACATTGGCCGTA+GGG 0.555452 4_1:+53064433 None:intergenic
TCTAGACATTGGATGTTCTG+TGG 0.556538 4_1:-53064487 Msa0555210:CDS
GCTCGAACCATGCGAGAGAG+AGG 0.558206 4_1:+53065821 None:intergenic
CTATCCTCAAGCTTGGTGCT+AGG 0.560201 4_1:-53065772 Msa0555210:CDS
TTGAAGGGAGGTTGTTGTGT+CGG 0.560578 4_1:+53065898 None:intergenic
AATCAGGGTATACTAAAGAC+TGG 0.564057 4_1:+53065544 None:intergenic
GACCAAACACTGAAGGAAGC+TGG 0.567832 4_1:-53063047 Msa0555210:CDS
CAACATTTGAGTTTAATGAA+AGG 0.570241 4_1:-53062909 Msa0555210:three_prime_UTR
CAAGCTAGTAGCTATGAAGA+AGG 0.571992 4_1:-53065878 Msa0555210:CDS
CCTTCTGCAGCCAAAGTCAA+AGG 0.572810 4_1:-53063572 Msa0555210:intron
CATTTCATGCATATGATGAA+GGG 0.577373 4_1:-53065415 Msa0555210:CDS
TTCCGTCTCCTTCGGCCTGG+AGG 0.580123 4_1:-53063697 Msa0555210:CDS
ATTGGTGACATTCTAGACAT+TGG 0.582465 4_1:-53064498 Msa0555210:CDS
AGAGACTCCTCTCTCTCGCA+TGG 0.582497 4_1:-53065828 Msa0555210:CDS
GTTAAAACTCACAATGACAT+TGG 0.583152 4_1:+53064425 None:intergenic
GAATGGATGAGCAGCTTAAG+GGG 0.587364 4_1:-53062735 Msa0555210:three_prime_UTR
ATGATGAAGGGAATCTTACA+TGG 0.591019 4_1:-53065403 Msa0555210:CDS
ATAGGCAGCAGCAGAAGCCG+AGG 0.591142 4_1:-53064652 Msa0555210:intron
TAAAGTCACGTGCCTAGGGT+TGG 0.598671 4_1:+53062998 None:intergenic
ACCACCACGTGACGCCGTGT+TGG 0.604335 4_1:+53065935 None:intergenic
TCTTGCGGACAAGTTCCCTA+CGG 0.605513 4_1:-53064448 Msa0555210:CDS
CTTGCCTAGCACCAAGCTTG+AGG 0.605707 4_1:+53065768 None:intergenic
TGGTGCCTTTGTGGTAGTGG+TGG 0.612166 4_1:+53065955 None:intergenic
CAAGATGTTTCATTGAGGCA+CGG 0.614783 4_1:+53062968 None:intergenic
AGTAAGCTCAAGATTTCTTG+CGG 0.617617 4_1:-53064463 Msa0555210:CDS
AAAATGGATACATGCAAATG+GGG 0.624426 4_1:-53064235 Msa0555210:CDS
AATCAATTCTTACCAACCCT+AGG 0.624884 4_1:-53063010 Msa0555210:CDS
AGTGGTGGTGATGCCATGCG+GGG 0.626878 4_1:+53065970 None:intergenic
TCTTCTACTGATGAAGCGGT+AGG 0.627521 4_1:+53064597 None:intergenic
CTTCATCAATGTAAACAGGA+CGG 0.628906 4_1:+53063112 None:intergenic
TGATATGGACCAAACACTGA+AGG 0.631121 4_1:-53063054 Msa0555210:CDS
GGCACCAACACGGCGTCACG+TGG 0.633755 4_1:-53065939 Msa0555210:CDS
CATGCAAATGGGGAAGACAC+AGG 0.633924 4_1:-53064225 Msa0555210:CDS
CAAACGTGCCTCCAGGCCGA+AGG 0.635743 4_1:+53063689 None:intergenic
TCACGTGGTGGTTCACGCTG+CGG 0.638308 4_1:-53065924 Msa0555210:CDS
AATCCCAAGATGTTTCATTG+AGG 0.639944 4_1:+53062963 None:intergenic
GCGGGGAGATTAATGATGAG+AGG 0.645229 4_1:+53065987 None:intergenic
GTAGTGGTGGTGATGCCATG+CGG 0.652417 4_1:+53065968 None:intergenic
TCATCATTAATCTCCCCGCA+TGG 0.655400 4_1:-53065983 Msa0555210:CDS
ACCAACACGGCGTCACGTGG+TGG 0.659578 4_1:-53065936 Msa0555210:CDS
CTCACAATGACATTGGCCGT+AGG 0.667491 4_1:+53064432 None:intergenic
CATCACCACCACTACCACAA+AGG 0.675272 4_1:-53065960 Msa0555210:CDS
CTACCACAAAGGCACCAACA+CGG 0.688875 4_1:-53065949 Msa0555210:CDS
GCTCAGCATAAGGAAAAGAG+CGG 0.692800 4_1:-53064279 Msa0555210:CDS
ATAGCTACTAGCTTGAAGGG+AGG 0.713336 4_1:+53065886 None:intergenic
GAAACTGGAAGTGCAAATTG+TGG 0.722800 4_1:+53066053 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATCTTTAAAAGTAATAAAT+TGG + chr4_1:53063669-53063688 None:intergenic 10.0%
!!! ATGTATTGATTATAAAAATA+TGG + chr4_1:53065175-53065194 None:intergenic 10.0%
!! TAAAGATGAAATTACAATCA+GGG + chr4_1:53063162-53063181 None:intergenic 20.0%
!!! TTTTTGTCAATGTTATTGAA+TGG - chr4_1:53063339-53063358 Msa0555210:intron 20.0%
!!! TTTTTGTTTCTTTTGTTCTT+TGG - chr4_1:53063877-53063896 Msa0555210:intron 20.0%
!!! ATGGAAATGATAATCATTTT+TGG - chr4_1:53063961-53063980 Msa0555210:intron 20.0%
!!! AGATCTTATGATATTTTCTA+TGG + chr4_1:53064003-53064022 None:intergenic 20.0%
!!! CATTTTATAGGATTTTTTCT+AGG + chr4_1:53064439-53064458 None:intergenic 20.0%
!! CTAGAAAAAATCCTATAAAA+TGG - chr4_1:53064437-53064456 Msa0555210:CDS 20.0%
!! GGATATATGATTTAATGTAT+TGG + chr4_1:53065333-53065352 None:intergenic 20.0%
!! AGTATTAAAAGTTATGTTAC+AGG + chr4_1:53065396-53065415 None:intergenic 20.0%
!!! TTGTTTCTTTTGAATCTTTT+TGG - chr4_1:53065748-53065767 Msa0555210:intron 20.0%
!! ATAATCAAGAATAGGAAATT+AGG - chr4_1:53065867-53065886 Msa0555210:CDS 20.0%
! GTAAAGATGAAATTACAATC+AGG + chr4_1:53063163-53063182 None:intergenic 25.0%
! GTTACTTCAATTTCCTAAAT+AGG + chr4_1:53063488-53063507 None:intergenic 25.0%
! TAAAGATTTGTGTTTGTCAA+AGG - chr4_1:53063681-53063700 Msa0555210:CDS 25.0%
! TGATTAAACCCAAACATAAA+AGG + chr4_1:53063792-53063811 None:intergenic 25.0%
!! AGATTTTCCAATGTAATATG+TGG - chr4_1:53063853-53063872 Msa0555210:intron 25.0%
! CAAAAAACCACATATTACAT+TGG + chr4_1:53063863-53063882 None:intergenic 25.0%
! GATCTGTATTATATGATGAT+AGG - chr4_1:53064018-53064037 Msa0555210:intron 25.0%
!! TTTGCATGTATCCATTTTAT+AGG + chr4_1:53064451-53064470 None:intergenic 25.0%
! ATAAAATGGATACATGCAAA+TGG - chr4_1:53064451-53064470 Msa0555210:CDS 25.0%
! TAAAATGGATACATGCAAAT+GGG - chr4_1:53064452-53064471 Msa0555210:CDS 25.0%
! TTCTTGCATTAAATCAATTG+TGG - chr4_1:53064638-53064657 Msa0555210:CDS 25.0%
! ATGATATTAGTGTTTGTGAT+AGG + chr4_1:53065088-53065107 None:intergenic 25.0%
! AAAGATGTAAAAATACCTGT+AGG + chr4_1:53065143-53065162 None:intergenic 25.0%
!! TATAGCTTTTCCTTATATTG+TGG - chr4_1:53065206-53065225 Msa0555210:intron 25.0%
! TTACTGTTAACCACAATATA+AGG + chr4_1:53065219-53065238 None:intergenic 25.0%
!! GAAAGATCTTTAATCAGTTT+TGG + chr4_1:53065470-53065489 None:intergenic 25.0%
!! CAACATTTGAGTTTAATGAA+AGG - chr4_1:53065779-53065798 Msa0555210:CDS 25.0%
!! AATGAAAGGTTTTACTTGTT+AGG - chr4_1:53065793-53065812 Msa0555210:CDS 25.0%
!!! TTGTTTTTTGCTTTGTTCTT+TGG - chr4_1:53065829-53065848 Msa0555210:CDS 25.0%
! AATGGTGTATAATCAAGAAT+AGG - chr4_1:53065859-53065878 Msa0555210:CDS 25.0%
TTGCACAACAAGTTTCAATA+TGG - chr4_1:53062992-53063011 Msa0555210:CDS 30.0%
! GGAAATGACAAAAGAGATTT+TGG - chr4_1:53063084-53063103 Msa0555210:CDS 30.0%
! TTTGGAGTCAGAAGTTTATA+AGG - chr4_1:53063102-53063121 Msa0555210:CDS 30.0%
!! CATCTTTACCTTTCACTTTT+TGG - chr4_1:53063174-53063193 Msa0555210:intron 30.0%
AGAAAAGACCAAAAAGTGAA+AGG + chr4_1:53063185-53063204 None:intergenic 30.0%
CATTTCATGCATATGATGAA+GGG - chr4_1:53063273-53063292 Msa0555210:intron 30.0%
TGGTAACTGATTATCAAGAA+AGG + chr4_1:53063380-53063399 None:intergenic 30.0%
TCAATTTCCTAAATAGGTAC+AGG + chr4_1:53063482-53063501 None:intergenic 30.0%
!! AACAAAACCGAAAAAGTGTT+GGG + chr4_1:53063602-53063621 None:intergenic 30.0%
! AAACAAAACCGAAAAAGTGT+TGG + chr4_1:53063603-53063622 None:intergenic 30.0%
ATAGTTGTAAAAATGTGCCT+AGG - chr4_1:53063713-53063732 Msa0555210:CDS 30.0%
GTTATCATTCATATCTTGGA+TGG + chr4_1:53063742-53063761 None:intergenic 30.0%
GTCTGTTATCATTCATATCT+TGG + chr4_1:53063746-53063765 None:intergenic 30.0%
AAATGCACCTATGATTCAAA+TGG + chr4_1:53063906-53063925 None:intergenic 30.0%
TCGTTAAGCAAACTATTATG+TGG - chr4_1:53063938-53063957 Msa0555210:intron 30.0%
TAAGCAAACTATTATGTGGA+TGG - chr4_1:53063942-53063961 Msa0555210:intron 30.0%
! TTTTCTATGGAATTTCAGCA+AGG + chr4_1:53063990-53064009 None:intergenic 30.0%
CATTCACAAACATCTATGAT+TGG - chr4_1:53064172-53064191 Msa0555210:intron 30.0%
GTTAAAACTCACAATGACAT+TGG + chr4_1:53064266-53064285 None:intergenic 30.0%
ATGATTGAAATGTTTGTTCC+AGG - chr4_1:53064354-53064373 Msa0555210:intron 30.0%
TGATTGAAATGTTTGTTCCA+GGG - chr4_1:53064355-53064374 Msa0555210:intron 30.0%
AAAATGGATACATGCAAATG+GGG - chr4_1:53064453-53064472 Msa0555210:CDS 30.0%
ACCAGATCAAATGATTTAGA+AGG + chr4_1:53064493-53064512 None:intergenic 30.0%
TTTAACGGAGGACTAAATAA+GGG + chr4_1:53064547-53064566 None:intergenic 30.0%
ATTTAACGGAGGACTAAATA+AGG + chr4_1:53064548-53064567 None:intergenic 30.0%
TTGCTTCGTTCTCTATAAAA+AGG + chr4_1:53064698-53064717 None:intergenic 30.0%
! AAACGTGTATTTTACTTCCT+AGG - chr4_1:53064723-53064742 Msa0555210:intron 30.0%
! TGTATTTTACTTCCTAGGAA+CGG - chr4_1:53064728-53064747 Msa0555210:intron 30.0%
GAATCTTGCAATTGAAATCT+AGG - chr4_1:53064750-53064769 Msa0555210:intron 30.0%
TCATGAAACTGCATAAATTG+AGG + chr4_1:53064931-53064950 None:intergenic 30.0%
TTCCTTTACTACATTCACTA+TGG + chr4_1:53064968-53064987 None:intergenic 30.0%
!! GTTTGCTATGACAGATAATT+CGG - chr4_1:53065017-53065036 Msa0555210:intron 30.0%
! CAGAATGAAGTGAGATTTTA+TGG - chr4_1:53065442-53065461 Msa0555210:intron 30.0%
AAGATCTTTCATGTAGCTTA+TGG - chr4_1:53065480-53065499 Msa0555210:intron 30.0%
CTTATGGTAAATTGTTGTCT+AGG - chr4_1:53065496-53065515 Msa0555210:intron 30.0%
! TTGTTTTCTTCATGTCTTGT+AGG - chr4_1:53065544-53065563 Msa0555210:CDS 30.0%
!! ACTTGTTAGGAAGCTTTATT+TGG - chr4_1:53065806-53065825 Msa0555210:CDS 30.0%
TTGTTCTTTGGTTACTTGAA+TGG - chr4_1:53065841-53065860 Msa0555210:CDS 30.0%
ATTAGGAATGACGTTTAAGA+AGG - chr4_1:53065884-53065903 Msa0555210:CDS 30.0%
TGTACTTTCGAATGTTAGAA+TGG - chr4_1:53065936-53065955 Msa0555210:CDS 30.0%
! CTTTGTTTGTCTTACGTTAA+AGG - chr4_1:53065989-53066008 Msa0555210:CDS 30.0%
!! CTTTAAAGCTATCTACTTCA+CGG - chr4_1:53066012-53066031 Msa0555210:CDS 30.0%
! TTCATAGCTACTAGCTTGAA+GGG + chr4_1:53062808-53062827 None:intergenic 35.0%
GAAAGCTTGTAAGACCAAAA+TGG - chr4_1:53062832-53062851 Msa0555210:three_prime_UTR 35.0%
AGCTTGAGGATAGAGTATAA+AGG + chr4_1:53062909-53062928 None:intergenic 35.0%
TTATACTCTATCCTCAAGCT+TGG - chr4_1:53062909-53062928 Msa0555210:three_prime_UTR 35.0%
TAGGCAAGTTCTTATAAGGT+TGG - chr4_1:53062935-53062954 Msa0555210:three_prime_UTR 35.0%
!!! GGTTGATCAGTGTGTTTTTT+TGG - chr4_1:53063013-53063032 Msa0555210:CDS 35.0%
CTGAGAAAAACAACATACCT+TGG - chr4_1:53063059-53063078 Msa0555210:CDS 35.0%
AGAAAAACAACATACCTTGG+AGG - chr4_1:53063062-53063081 Msa0555210:CDS 35.0%
GAAAAACAACATACCTTGGA+GGG - chr4_1:53063063-53063082 Msa0555210:CDS 35.0%
GTCAGAAGTTTATAAGGAGT+TGG - chr4_1:53063108-53063127 Msa0555210:CDS 35.0%
AATCAGGGTATACTAAAGAC+TGG + chr4_1:53063147-53063166 None:intergenic 35.0%
GCATGTTTCAACTGTATTGA+TGG - chr4_1:53063213-53063232 Msa0555210:intron 35.0%
! GTTTCAACTGTATTGATGGA+AGG - chr4_1:53063217-53063236 Msa0555210:intron 35.0%
CCTTCATCATATGCATGAAA+TGG + chr4_1:53063275-53063294 None:intergenic 35.0%
CCATTTCATGCATATGATGA+AGG - chr4_1:53063272-53063291 Msa0555210:intron 35.0%
ATGATGAAGGGAATCTTACA+TGG - chr4_1:53063285-53063304 Msa0555210:intron 35.0%
ACCATAGATATGTTCCTCTT+TGG - chr4_1:53063396-53063415 Msa0555210:intron 35.0%
ACCAAAGAGGAACATATCTA+TGG + chr4_1:53063400-53063419 None:intergenic 35.0%
AGATATGTTCCTCTTTGGTT+TGG - chr4_1:53063401-53063420 Msa0555210:intron 35.0%
ATTCAACTACCAAACCAAAG+AGG + chr4_1:53063413-53063432 None:intergenic 35.0%
TGTTTGTGTCAATGCTTCAT+AGG + chr4_1:53063447-53063466 None:intergenic 35.0%
! ATAGGTACAGGTATCGTATT+CGG + chr4_1:53063470-53063489 None:intergenic 35.0%
TACGATACCTGTACCTATTT+AGG - chr4_1:53063472-53063491 Msa0555210:intron 35.0%
!! TGTTCTTCCCAACACTTTTT+CGG - chr4_1:53063592-53063611 Msa0555210:intron 35.0%
! TTTGCTGGACCTTTTATGTT+TGG - chr4_1:53063780-53063799 Msa0555210:intron 35.0%
! TTGCTGGACCTTTTATGTTT+GGG - chr4_1:53063781-53063800 Msa0555210:intron 35.0%
TTGGCAACCATTTGAATCAT+AGG - chr4_1:53063896-53063915 Msa0555210:intron 35.0%
! ATTGGTGACATTCTAGACAT+TGG - chr4_1:53064190-53064209 Msa0555210:CDS 35.0%
AGTAAGCTCAAGATTTCTTG+CGG - chr4_1:53064225-53064244 Msa0555210:CDS 35.0%
! TGTAAAAGAAGCCTTGTGTA+TGG - chr4_1:53064317-53064336 Msa0555210:intron 35.0%
GATTGAAATGTTTGTTCCAG+GGG - chr4_1:53064356-53064375 Msa0555210:intron 35.0%
GCCTTCTAAATCATTTGATC+TGG - chr4_1:53064489-53064508 Msa0555210:CDS 35.0%
! TCTGGTGTCTATTTCTTATG+TGG - chr4_1:53064507-53064526 Msa0555210:CDS 35.0%
GACTAAATAAGGGGAGAAAA+AGG + chr4_1:53064537-53064556 None:intergenic 35.0%
TTAACGGAGGACTAAATAAG+GGG + chr4_1:53064546-53064565 None:intergenic 35.0%
GCAGCATTCTCTGAATTTAA+CGG + chr4_1:53064562-53064581 None:intergenic 35.0%
! ATTTAGAACTAGCAACTTGC+AGG + chr4_1:53064786-53064805 None:intergenic 35.0%
AGCCATAGTGAATGTAGTAA+AGG - chr4_1:53064963-53064982 Msa0555210:intron 35.0%
TGGTAAATTGTTGTCTAGGT+AGG - chr4_1:53065500-53065519 Msa0555210:intron 35.0%
TTCATCAATGTAAACAGGAC+GGG + chr4_1:53065578-53065597 None:intergenic 35.0%
CTTCATCAATGTAAACAGGA+CGG + chr4_1:53065579-53065598 None:intergenic 35.0%
TGCTCTTCATCAATGTAAAC+AGG + chr4_1:53065583-53065602 None:intergenic 35.0%
AAGTAGTACTCGTCAAGAAA+GGG + chr4_1:53065611-53065630 None:intergenic 35.0%
AATCAATTCTTACCAACCCT+AGG - chr4_1:53065678-53065697 Msa0555210:intron 35.0%
AATCCCAAGATGTTTCATTG+AGG + chr4_1:53065728-53065747 None:intergenic 35.0%
CTGTGAACATTATCCAATCT+TGG - chr4_1:53066040-53066059 Msa0555210:five_prime_UTR 35.0%
CTTGTATTCACAACCAAGAT+TGG + chr4_1:53066056-53066075 None:intergenic 35.0%
! GAAACTGGAAGTGCAAATTG+TGG + chr4_1:53062638-53062657 None:intergenic 40.0%
! CTTCATAGCTACTAGCTTGA+AGG + chr4_1:53062809-53062828 None:intergenic 40.0%
CAAGCTAGTAGCTATGAAGA+AGG - chr4_1:53062810-53062829 Msa0555210:three_prime_UTR 40.0%
CTTGTAAGACCAAAATGGAC+TGG - chr4_1:53062837-53062856 Msa0555210:three_prime_UTR 40.0%
GTGCTAGGCAAGTTCTTATA+AGG - chr4_1:53062931-53062950 Msa0555210:three_prime_UTR 40.0%
AGCAAAGTGAGTAGAAGCAA+TGG + chr4_1:53062965-53062984 None:intergenic 40.0%
!! TCTTTTGTCATTTCCCTCCA+AGG + chr4_1:53063079-53063098 None:intergenic 40.0%
ATTGAAGTAACCACATGCGT+TGG - chr4_1:53063497-53063516 Msa0555210:intron 40.0%
ACACTGATACATGTTGGACT+TGG - chr4_1:53063530-53063549 Msa0555210:intron 40.0%
!! ACACCATCACTCTAAAGTGT+CGG - chr4_1:53063555-53063574 Msa0555210:intron 40.0%
!! AAAGTGTCGGTGCTACATAA+TGG - chr4_1:53063568-53063587 Msa0555210:intron 40.0%
! CAGTCAAAAGACGTTTTTGC+TGG - chr4_1:53063765-53063784 Msa0555210:intron 40.0%
TCTAGACATTGGATGTTCTG+TGG - chr4_1:53064201-53064220 Msa0555210:CDS 40.0%
CTAGACATTGGATGTTCTGT+GGG - chr4_1:53064202-53064221 Msa0555210:CDS 40.0%
TGAGCCACAGCTAGAAAATA+GGG + chr4_1:53064394-53064413 None:intergenic 40.0%
GCATTCTCTGAATTTAACGG+AGG + chr4_1:53064559-53064578 None:intergenic 40.0%
AATTGCAAGATTCCGTTCCT+AGG + chr4_1:53064743-53064762 None:intergenic 40.0%
ACTGCATAAATTGAGGAGTC+AGG + chr4_1:53064924-53064943 None:intergenic 40.0%
CAAGTAGTACTCGTCAAGAA+AGG + chr4_1:53065612-53065631 None:intergenic 40.0%
CGAGTACTACTTGACTGATA+TGG - chr4_1:53065619-53065638 Msa0555210:CDS 40.0%
TGATATGGACCAAACACTGA+AGG - chr4_1:53065634-53065653 Msa0555210:CDS 40.0%
CAAGATGTTTCATTGAGGCA+CGG + chr4_1:53065723-53065742 None:intergenic 40.0%
GTGCCTCAATGAAACATCTT+GGG - chr4_1:53065722-53065741 Msa0555210:intron 40.0%
TAGAATGGATGAGCAGCTTA+AGG - chr4_1:53065951-53065970 Msa0555210:CDS 40.0%
AGAATGGATGAGCAGCTTAA+GGG - chr4_1:53065952-53065971 Msa0555210:CDS 40.0%
TGTGTGTGTGTGTGTGAAAC+TGG + chr4_1:53062653-53062672 None:intergenic 45.0%
TCACACACACACACACACAA+TGG - chr4_1:53062656-53062675 Msa0555210:three_prime_UTR 45.0%
TCATCATTAATCTCCCCGCA+TGG - chr4_1:53062705-53062724 Msa0555210:three_prime_UTR 45.0%
TTGAAGGGAGGTTGTTGTGT+CGG + chr4_1:53062793-53062812 None:intergenic 45.0%
! ATAGCTACTAGCTTGAAGGG+AGG + chr4_1:53062805-53062824 None:intergenic 45.0%
TGAAGGGAATCTTACATGGC+TGG - chr4_1:53063289-53063308 Msa0555210:intron 45.0%
GTGTGGACACTGATACATGT+TGG - chr4_1:53063524-53063543 Msa0555210:intron 45.0%
CATATCTTGGATGGAAGCCT+AGG + chr4_1:53063733-53063752 None:intergenic 45.0%
!! CATTGACTTAGTAGCAGCCT+CGG + chr4_1:53064056-53064075 None:intergenic 45.0%
TCTTCTACTGATGAAGCGGT+AGG + chr4_1:53064094-53064113 None:intergenic 45.0%
CGCTTCTTCTACTGATGAAG+CGG + chr4_1:53064098-53064117 None:intergenic 45.0%
CGCAGATAATGCGTGACAAT+TGG - chr4_1:53064119-53064138 Msa0555210:intron 45.0%
TCACAATGACATTGGCCGTA+GGG + chr4_1:53064258-53064277 None:intergenic 45.0%
CCATGTACATGCCATACACA+AGG + chr4_1:53064331-53064350 None:intergenic 45.0%
CCTTGTGTATGGCATGTACA+TGG - chr4_1:53064328-53064347 Msa0555210:intron 45.0%
!!! GTCACCCTATTTTCTAGCTG+TGG - chr4_1:53064387-53064406 Msa0555210:intron 45.0%
CTGAGCCACAGCTAGAAAAT+AGG + chr4_1:53064395-53064414 None:intergenic 45.0%
GCTCAGCATAAGGAAAAGAG+CGG - chr4_1:53064409-53064428 Msa0555210:intron 45.0%
ACATTCACTATGGCTCTTGC+AGG + chr4_1:53064958-53064977 None:intergenic 45.0%
! ACCTGTAGGACCTTTGACTT+TGG + chr4_1:53065129-53065148 None:intergenic 45.0%
ACAACGACTATGCGTCTAGT+AGG + chr4_1:53065354-53065373 None:intergenic 45.0%
AACCAGCTTCCTTCAGTGTT+TGG + chr4_1:53065646-53065665 None:intergenic 45.0%
CGTGCCTCAATGAAACATCT+TGG - chr4_1:53065721-53065740 Msa0555210:intron 45.0%
GAATGGATGAGCAGCTTAAG+GGG - chr4_1:53065953-53065972 Msa0555210:CDS 45.0%
GCGGGGAGATTAATGATGAG+AGG + chr4_1:53062704-53062723 None:intergenic 50.0%
CATCACCACCACTACCACAA+AGG - chr4_1:53062728-53062747 Msa0555210:three_prime_UTR 50.0%
! TGTTGGTGCCTTTGTGGTAG+TGG + chr4_1:53062739-53062758 None:intergenic 50.0%
!! CTACCACAAAGGCACCAACA+CGG - chr4_1:53062739-53062758 Msa0555210:three_prime_UTR 50.0%
! GGAGTCTCTCCAGTCCATTT+TGG + chr4_1:53062849-53062868 None:intergenic 50.0%
!! CTATCCTCAAGCTTGGTGCT+AGG - chr4_1:53062916-53062935 Msa0555210:three_prime_UTR 50.0%
!! GCACCGACACTTTAGAGTGA+TGG + chr4_1:53063561-53063580 None:intergenic 50.0%
CGAGGCTGCTACTAAGTCAA+TGG - chr4_1:53064054-53064073 Msa0555210:intron 50.0%
TCTTGCGGACAAGTTCCCTA+CGG - chr4_1:53064240-53064259 Msa0555210:CDS 50.0%
CTCACAATGACATTGGCCGT+AGG + chr4_1:53064259-53064278 None:intergenic 50.0%
TCTAGCTGTGGCTCAGCATA+AGG - chr4_1:53064399-53064418 Msa0555210:intron 50.0%
CATGCAAATGGGGAAGACAC+AGG - chr4_1:53064463-53064482 Msa0555210:CDS 50.0%
!! AGGAAGCATTCCGTCTCCTT+CGG - chr4_1:53064983-53065002 Msa0555210:intron 50.0%
! CCTTTGACTTTGGCTGCAGA+AGG + chr4_1:53065119-53065138 None:intergenic 50.0%
CCTTCTGCAGCCAAAGTCAA+AGG - chr4_1:53065116-53065135 Msa0555210:intron 50.0%
GCCAAAGTCAAAGGTCCTAC+AGG - chr4_1:53065125-53065144 Msa0555210:intron 50.0%
GACCAAACACTGAAGGAAGC+TGG - chr4_1:53065641-53065660 Msa0555210:intron 50.0%
TAAAGTCACGTGCCTAGGGT+TGG + chr4_1:53065693-53065712 None:intergenic 50.0%
CCGTTAAAGTCACGTGCCTA+GGG + chr4_1:53065697-53065716 None:intergenic 50.0%
CCCTAGGCACGTGACTTTAA+CGG - chr4_1:53065694-53065713 Msa0555210:intron 50.0%
! TAGTGGTGGTGATGCCATGC+GGG + chr4_1:53062722-53062741 None:intergenic 55.0%
! GTAGTGGTGGTGATGCCATG+CGG + chr4_1:53062723-53062742 None:intergenic 55.0%
!! TGGTGCCTTTGTGGTAGTGG+TGG + chr4_1:53062736-53062755 None:intergenic 55.0%
AGAGACTCCTCTCTCTCGCA+TGG - chr4_1:53062860-53062879 Msa0555210:three_prime_UTR 55.0%
CTTGCCTAGCACCAAGCTTG+AGG + chr4_1:53062923-53062942 None:intergenic 55.0%
AGGGTGACATATCTAGCCCC+TGG + chr4_1:53064375-53064394 None:intergenic 55.0%
GTCATAGCAAACGTGCCTCC+AGG + chr4_1:53065009-53065028 None:intergenic 55.0%
GCCGTTAAAGTCACGTGCCT+AGG + chr4_1:53065698-53065717 None:intergenic 55.0%
! AGTGGTGGTGATGCCATGCG+GGG + chr4_1:53062721-53062740 None:intergenic 60.0%
! ACGCCGTGTTGGTGCCTTTG+TGG + chr4_1:53062745-53062764 None:intergenic 60.0%
TCACGTGGTGGTTCACGCTG+CGG - chr4_1:53062764-53062783 Msa0555210:three_prime_UTR 60.0%
GCTCGAACCATGCGAGAGAG+AGG + chr4_1:53062870-53062889 None:intergenic 60.0%
CCACACGACACCAACGCATG+TGG + chr4_1:53063510-53063529 None:intergenic 60.0%
!! CCACATGCGTTGGTGTCGTG+TGG - chr4_1:53063507-53063526 Msa0555210:intron 60.0%
ATAGGCAGCAGCAGAAGCCG+AGG - chr4_1:53064036-53064055 Msa0555210:intron 60.0%
ACCAACACGGCGTCACGTGG+TGG - chr4_1:53062752-53062771 Msa0555210:three_prime_UTR 65.0%
ACCACCACGTGACGCCGTGT+TGG + chr4_1:53062756-53062775 None:intergenic 65.0%
GCATTCCGTCTCCTTCGGCC+TGG - chr4_1:53064988-53065007 Msa0555210:intron 65.0%
TTCCGTCTCCTTCGGCCTGG+AGG - chr4_1:53064991-53065010 Msa0555210:intron 65.0%
TGCCTCCAGGCCGAAGGAGA+CGG + chr4_1:53064996-53065015 None:intergenic 65.0%
CAAACGTGCCTCCAGGCCGA+AGG + chr4_1:53065002-53065021 None:intergenic 65.0%
GGCACCAACACGGCGTCACG+TGG - chr4_1:53062749-53062768 Msa0555210:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 53062635 53066075 53062635 ID=Msa0555210;Name=Msa0555210
chr4_1 mRNA 53062635 53066075 53062635 ID=Msa0555210-mRNA-1;Parent=Msa0555210;Name=Msa0555210-mRNA-1;_AED=0.05;_eAED=0.05;_QI=40|1|1|1|1|1|8|342|370
chr4_1 exon 53062635 53063144 53062635 ID=Msa0555210-mRNA-1:exon:15405;Parent=Msa0555210-mRNA-1
chr4_1 exon 53063564 53063584 53063564 ID=Msa0555210-mRNA-1:exon:15404;Parent=Msa0555210-mRNA-1
chr4_1 exon 53063672 53063767 53063672 ID=Msa0555210-mRNA-1:exon:15403;Parent=Msa0555210-mRNA-1
chr4_1 exon 53064182 53064334 53064182 ID=Msa0555210-mRNA-1:exon:15402;Parent=Msa0555210-mRNA-1
chr4_1 exon 53064437 53064670 53064437 ID=Msa0555210-mRNA-1:exon:15401;Parent=Msa0555210-mRNA-1
chr4_1 exon 53065400 53065449 53065400 ID=Msa0555210-mRNA-1:exon:15400;Parent=Msa0555210-mRNA-1
chr4_1 exon 53065544 53065656 53065544 ID=Msa0555210-mRNA-1:exon:15399;Parent=Msa0555210-mRNA-1
chr4_1 exon 53065758 53066075 53065758 ID=Msa0555210-mRNA-1:exon:15398;Parent=Msa0555210-mRNA-1
chr4_1 five_prime_UTR 53066036 53066075 53066036 ID=Msa0555210-mRNA-1:five_prime_utr;Parent=Msa0555210-mRNA-1
chr4_1 CDS 53065758 53066035 53065758 ID=Msa0555210-mRNA-1:cds;Parent=Msa0555210-mRNA-1
chr4_1 CDS 53065544 53065656 53065544 ID=Msa0555210-mRNA-1:cds;Parent=Msa0555210-mRNA-1
chr4_1 CDS 53065400 53065449 53065400 ID=Msa0555210-mRNA-1:cds;Parent=Msa0555210-mRNA-1
chr4_1 CDS 53064437 53064670 53064437 ID=Msa0555210-mRNA-1:cds;Parent=Msa0555210-mRNA-1
chr4_1 CDS 53064182 53064334 53064182 ID=Msa0555210-mRNA-1:cds;Parent=Msa0555210-mRNA-1
chr4_1 CDS 53063672 53063767 53063672 ID=Msa0555210-mRNA-1:cds;Parent=Msa0555210-mRNA-1
chr4_1 CDS 53063564 53063584 53063564 ID=Msa0555210-mRNA-1:cds;Parent=Msa0555210-mRNA-1
chr4_1 CDS 53062977 53063144 53062977 ID=Msa0555210-mRNA-1:cds;Parent=Msa0555210-mRNA-1
chr4_1 three_prime_UTR 53062635 53062976 53062635 ID=Msa0555210-mRNA-1:three_prime_utr;Parent=Msa0555210-mRNA-1
Gene Sequence

>Msa0555210

ATGGCTCTGTCTTCACAACTTCAGAACCTCTCATCATTAATCTCCCCGCATGGCATCACCACCACTACCACAAAGGCACCAACACGGCGTCACGTGGTGGTTCACGCTGCGGCTTCCGACACAACAACCTCCCTTCAAGCTAGTAGCTATGAAGAAGGAAAGCTTGTAAGACCAAAATGGACTGGAGAGACTCCTCTCTCTCGCATGGTTCGAGCTCTCATATCTTTCAAGCCTTTATACTCTATCCTCAAGCTTGGTGCTAGGCAAGTTCTTATAAGTACAGCTGAGAAAAACAACATACCTTGGAGGGAAATGACAAAAGAGATTTTGGAGTCAGAAGTTTATAAGGAGTTGGATAGCATTCAAAACCAGTCTTTAGTATACCCTGATTATTATTTGAATCCATTTCATGCATATGATGAAGGGAATCTTACATGGCTGGCAGCAGCAGAAGCCGAGGCTGCTACTAAGTCAATGGCAAGACGAGCGATTCCTACCGCTTCATCAGTAGAAGAAGCGACGCAGATAATGCGTGACAATTGGCTTAATGCAATTGAACAACGTCATCTACAGCATTCACAAACATCTATGATTGGTGACATTCTAGACATTGGATGTTCTGTGGGAGTAAGCTCAAGATTTCTTGCGGACAAGTTCCCTACGGCCAATGTCATTGGGCTAGATATGTCACCCTATTTTCTAGCTGTGGCTCAGCATAAGGAAAAGAGCGGAACGCCTAGAAAAAATCCTATAAAATGGATACATGCAAATGGGGAAGACACAGGCTTGCCTTCTAAATCATTTGATCTGGTGTCTATTTCTTATGTGTTTCATGAATGTCCTGCAAGAGCCATAGTGAATGTAGTAAAGGAAGCATTCCGTCTCCTTCGGCCTGGAGGCACGTTTGCTATGACAGATAATTCGCCAAAGTCAAAGGTCCTACAGGAGTTGTCTCCCGTCCTGTTTACATTGATGAAGAGCACAGAACCCTTTCTTGACGAGTACTACTTGACTGATATGGACCAAACACTGAAGGAAGCTGGTTTCGTGAACATAAAATCAATTCTTACCAACCCTAGGCACGTGACTTTAACGGCTACCGTGCCTCAATGA

Protein sequence

>Msa0555210

MALSSQLQNLSSLISPHGITTTTTKAPTRRHVVVHAAASDTTTSLQASSYEEGKLVRPKWTGETPLSRMVRALISFKPLYSILKLGARQVLISTAEKNNIPWREMTKEILESEVYKELDSIQNQSLVYPDYYLNPFHAYDEGNLTWLAAAEAEAATKSMARRAIPTASSVEEATQIMRDNWLNAIEQRHLQHSQTSMIGDILDIGCSVGVSSRFLADKFPTANVIGLDMSPYFLAVAQHKEKSGTPRKNPIKWIHANGEDTGLPSKSFDLVSISYVFHECPARAIVNVVKEAFRLLRPGGTFAMTDNSPKSKVLQELSPVLFTLMKSTEPFLDEYYLTDMDQTLKEAGFVNIKSILTNPRHVTLTATVPQ*