Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268380 | RDY14692.1 | 90.722 | 97 | 9 | 0 | 1 | 97 | 4 | 100 | 7.75e-56 | 178 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268380 | sp|Q49L15|PSBK_EUCGG | 91.667 | 60 | 5 | 0 | 1 | 60 | 1 | 60 | 1.80e-32 | 110 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268380 | A0A371II05 | 90.722 | 97 | 9 | 0 | 1 | 97 | 4 | 100 | 3.70e-56 | 178 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017120 | Msa0268380 | 0.810292 | 1.239653e-50 | -8.615850e-47 |
| Msa0035090 | Msa0268380 | 0.832930 | 7.136039e-56 | -8.615850e-47 |
| Msa0039200 | Msa0268380 | 0.815009 | 1.151418e-51 | -8.615850e-47 |
| Msa0040190 | Msa0268380 | 0.809232 | 2.094336e-50 | -8.615850e-47 |
| Msa0065390 | Msa0268380 | 0.803905 | 2.788618e-49 | -8.615850e-47 |
| Msa0086820 | Msa0268380 | 0.814334 | 1.624110e-51 | -8.615850e-47 |
| Msa0087880 | Msa0268380 | 0.809354 | 1.972559e-50 | -8.615850e-47 |
| Msa0092750 | Msa0268380 | 0.817438 | 3.297252e-52 | -8.615850e-47 |
| Msa0095140 | Msa0268380 | 0.843974 | 1.007216e-58 | -8.615850e-47 |
| Msa0095180 | Msa0268380 | 0.814695 | 1.351261e-51 | -8.615850e-47 |
| Msa0095200 | Msa0268380 | 0.861784 | 8.042062e-64 | -8.615850e-47 |
| Msa0095240 | Msa0268380 | 0.817402 | 3.359221e-52 | -8.615850e-47 |
| Msa0095270 | Msa0268380 | 0.834786 | 2.450613e-56 | -8.615850e-47 |
| Msa0103060 | Msa0268380 | 0.800113 | 1.678010e-48 | -8.615850e-47 |
| Msa0103780 | Msa0268380 | 0.801603 | 8.329533e-49 | -8.615850e-47 |
| Msa0110710 | Msa0268380 | 0.802939 | 4.422669e-49 | -8.615850e-47 |
| Msa0130120 | Msa0268380 | 0.821373 | 4.179890e-53 | -8.615850e-47 |
| Msa0133670 | Msa0268380 | 0.817676 | 2.914648e-52 | -8.615850e-47 |
| Msa0133880 | Msa0268380 | 0.823974 | 1.037670e-53 | -8.615850e-47 |
| Msa0134550 | Msa0268380 | 0.806885 | 6.618833e-50 | -8.615850e-47 |
| Msa0139740 | Msa0268380 | 0.801671 | 8.065376e-49 | -8.615850e-47 |
| Msa0141670 | Msa0268380 | 0.816168 | 6.354712e-52 | -8.615850e-47 |
| Msa0146470 | Msa0268380 | 0.801284 | 9.680176e-49 | -8.615850e-47 |
| Msa0175900 | Msa0268380 | 0.835186 | 1.942474e-56 | -8.615850e-47 |
| Msa0180980 | Msa0268380 | 0.803335 | 3.661888e-49 | -8.615850e-47 |
| Msa0184120 | Msa0268380 | 0.821086 | 4.868215e-53 | -8.615850e-47 |
| Msa0190000 | Msa0268380 | 0.804013 | 2.648336e-49 | -8.615850e-47 |
| Msa0221860 | Msa0268380 | 0.810612 | 1.057101e-50 | -8.615850e-47 |
| Msa0222070 | Msa0268380 | 0.831702 | 1.437208e-55 | -8.615850e-47 |
| Msa0222120 | Msa0268380 | 0.829468 | 5.060962e-55 | -8.615850e-47 |
| Msa0224960 | Msa0268380 | 0.806253 | 8.999313e-50 | -8.615850e-47 |
| Msa0225010 | Msa0268380 | 0.811323 | 7.414585e-51 | -8.615850e-47 |
| Msa0227290 | Msa0268380 | 0.827464 | 1.542403e-54 | -8.615850e-47 |
| Msa0257130 | Msa0268380 | 0.802127 | 6.500392e-49 | -8.615850e-47 |
| Msa0263620 | Msa0268380 | 0.829010 | 6.538198e-55 | -8.615850e-47 |
| Msa0268180 | Msa0268380 | 0.905981 | 2.415104e-80 | -8.615850e-47 |
| Msa0268220 | Msa0268380 | 0.810623 | 1.051196e-50 | -8.615850e-47 |
| Msa0268340 | Msa0268380 | 0.814591 | 1.424960e-51 | -8.615850e-47 |
| Msa0268380 | Msa0268420 | 0.905136 | 5.899566e-80 | -8.615850e-47 |
| Msa0268380 | Msa0268460 | 0.830817 | 2.371734e-55 | -8.615850e-47 |
| Msa0268380 | Msa0268500 | 0.814877 | 1.231776e-51 | -8.615850e-47 |
| Msa0268380 | Msa0268540 | 0.919876 | 2.600771e-87 | -8.615850e-47 |
| Msa0268380 | Msa0268650 | 0.904054 | 1.831937e-79 | -8.615850e-47 |
| Msa0268380 | Msa0268690 | 0.812155 | 4.888165e-51 | -8.615850e-47 |
| Msa0268380 | Msa0268730 | 0.894339 | 2.705650e-75 | -8.615850e-47 |
| Msa0268380 | Msa0268850 | 0.899127 | 2.695595e-77 | -8.615850e-47 |
| Msa0268380 | Msa0268900 | 0.824476 | 7.908740e-54 | -8.615850e-47 |
| Msa0268380 | Msa0268930 | 0.916219 | 2.318123e-85 | -8.615850e-47 |
| Msa0268380 | Msa0269060 | 0.912500 | 1.813519e-83 | -8.615850e-47 |
| Msa0268380 | Msa0269100 | 0.823444 | 1.380949e-53 | -8.615850e-47 |
| Msa0268380 | Msa0301460 | 0.814785 | 1.290913e-51 | -8.615850e-47 |
| Msa0268380 | Msa0301800 | 0.812761 | 3.602762e-51 | -8.615850e-47 |
| Msa0268380 | Msa0304870 | 0.806797 | 6.909855e-50 | -8.615850e-47 |
| Msa0268380 | Msa0306130 | 0.824758 | 6.785014e-54 | -8.615850e-47 |
| Msa0268380 | Msa0341260 | 0.807700 | 4.447732e-50 | -8.615850e-47 |
| Msa0268380 | Msa0344200 | 0.847202 | 1.342126e-59 | -8.615850e-47 |
| Msa0268380 | Msa0344250 | 0.812235 | 4.696213e-51 | -8.615850e-47 |
| Msa0268380 | Msa0344290 | 0.828362 | 9.375428e-55 | -8.615850e-47 |
| Msa0268380 | Msa0365150 | 0.805313 | 1.417801e-49 | -8.615850e-47 |
| Msa0268380 | Msa0377460 | 0.803775 | 2.967417e-49 | -8.615850e-47 |
| Msa0268380 | Msa0392450 | 0.810889 | 9.209251e-51 | -8.615850e-47 |
| Msa0268380 | Msa0417630 | 0.817390 | 3.381351e-52 | -8.615850e-47 |
| Msa0268380 | Msa0421800 | 0.801728 | 7.853407e-49 | -8.615850e-47 |
| Msa0268380 | Msa0426860 | 0.807384 | 5.190298e-50 | -8.615850e-47 |
| Msa0268380 | Msa0426890 | 0.804620 | 1.979112e-49 | -8.615850e-47 |
| Msa0268380 | Msa0427050 | 0.818385 | 2.014579e-52 | -8.615850e-47 |
| Msa0268380 | Msa0464500 | 0.803382 | 3.580139e-49 | -8.615850e-47 |
| Msa0268380 | Msa0466100 | 0.800250 | 1.574132e-48 | -8.615850e-47 |
| Msa0268380 | Msa0473450 | 0.820471 | 6.740313e-53 | -8.615850e-47 |
| Msa0268380 | Msa0482020 | 0.808738 | 2.671925e-50 | -8.615850e-47 |
| Msa0268380 | Msa0487560 | 0.815792 | 7.708761e-52 | -8.615850e-47 |
| Msa0268380 | Msa0487620 | 0.807269 | 5.489749e-50 | -8.615850e-47 |
| Msa0268380 | Msa0514260 | 0.800588 | 1.343225e-48 | -8.615850e-47 |
| Msa0268380 | Msa0547050 | 0.805357 | 1.388272e-49 | -8.615850e-47 |
| Msa0268380 | Msa0558890 | 0.805005 | 1.644924e-49 | -8.615850e-47 |
| Msa0268380 | Msa0582530 | 0.876108 | 1.814625e-68 | -8.615850e-47 |
| Msa0268380 | Msa0582570 | 0.817340 | 3.469023e-52 | -8.615850e-47 |
| Msa0268380 | Msa0582580 | 0.832700 | 8.139704e-56 | -8.615850e-47 |
| Msa0268380 | Msa0582620 | 0.885132 | 1.057815e-71 | -8.615850e-47 |
| Msa0268380 | Msa0582710 | 0.889966 | 1.508133e-73 | -8.615850e-47 |
| Msa0268380 | Msa0582740 | 0.896484 | 3.530902e-76 | -8.615850e-47 |
| Msa0268380 | Msa0582830 | 0.867419 | 1.388220e-65 | -8.615850e-47 |
| Msa0268380 | Msa0582900 | 0.889616 | 2.064730e-73 | -8.615850e-47 |
| Msa0268380 | Msa0591370 | 0.813645 | 2.304434e-51 | -8.615850e-47 |
| Msa0268380 | Msa0595780 | 0.814005 | 1.919881e-51 | -8.615850e-47 |
| Msa0268380 | Msa0601780 | 0.801076 | 1.067832e-48 | -8.615850e-47 |
| Msa0268380 | Msa0606140 | 0.812376 | 4.373588e-51 | -8.615850e-47 |
| Msa0268380 | Msa0619060 | 0.809139 | 2.193285e-50 | -8.615850e-47 |
| Msa0268380 | Msa0622390 | 0.800305 | 1.533656e-48 | -8.615850e-47 |
| Msa0268380 | Msa0635990 | 0.801015 | 1.098728e-48 | -8.615850e-47 |
| Msa0268380 | Msa0640880 | 0.804259 | 2.354264e-49 | -8.615850e-47 |
| Msa0268380 | Msa0647110 | 0.817853 | 2.658666e-52 | -8.615850e-47 |
| Msa0268380 | Msa0654060 | 0.802968 | 4.360186e-49 | -8.615850e-47 |
| Msa0268380 | Msa0662850 | 0.805079 | 1.587331e-49 | -8.615850e-47 |
| Msa0268380 | Msa0681890 | 0.809769 | 1.606382e-50 | -8.615850e-47 |
| Msa0268380 | Msa0686610 | 0.800697 | 1.276398e-48 | -8.615850e-47 |
| Msa0268380 | Msa0702070 | 0.809799 | 1.582689e-50 | -8.615850e-47 |
| Msa0268380 | Msa0705030 | 0.809394 | 1.933925e-50 | -8.615850e-47 |
| Msa0268380 | Msa0716670 | 0.812517 | 4.074109e-51 | -8.615850e-47 |
| Msa0268380 | Msa0727020 | 0.809131 | 2.201883e-50 | -8.615850e-47 |
| Msa0268380 | Msa0736930 | 0.803469 | 3.434540e-49 | -8.615850e-47 |
| Msa0268380 | Msa0739570 | 0.820038 | 8.472917e-53 | -8.615850e-47 |
| Msa0268380 | Msa0766880 | 0.841651 | 4.176031e-58 | -8.615850e-47 |
| Msa0268380 | Msa0772210 | 0.824136 | 9.503942e-54 | -8.615850e-47 |
| Msa0268380 | Msa0782330 | 0.818252 | 2.159328e-52 | -8.615850e-47 |
| Msa0268380 | Msa0804930 | 0.833331 | 5.669762e-56 | -8.615850e-47 |
| Msa0268380 | Msa0855490 | 0.814035 | 1.891278e-51 | -8.615850e-47 |
| Msa0268380 | Msa0860270 | 0.816908 | 4.339723e-52 | -8.615850e-47 |
| Msa0268380 | Msa0900320 | 0.823708 | 1.197891e-53 | -8.615850e-47 |
| Msa0268380 | Msa0910650 | 0.820666 | 6.078990e-53 | -8.615850e-47 |
| Msa0268380 | Msa0924860 | 0.844346 | 8.002198e-59 | -8.615850e-47 |
| Msa0268380 | Msa0931090 | 0.898329 | 5.905276e-77 | -8.615850e-47 |
| Msa0268380 | Msa0931150 | 0.871475 | 6.641837e-67 | -8.615850e-47 |
| Msa0268380 | Msa0931200 | 0.828130 | 1.066967e-54 | -8.615850e-47 |
| Msa0268380 | Msa0931280 | 0.853249 | 2.707402e-61 | -8.615850e-47 |
| Msa0268380 | Msa0965960 | 0.804763 | 1.847950e-49 | -8.615850e-47 |
| Msa0268380 | Msa0978000 | 0.800917 | 1.150862e-48 | -8.615850e-47 |
| Msa0268380 | Msa0983710 | 0.867710 | 1.119718e-65 | -8.615850e-47 |
| Msa0268380 | Msa0992570 | 0.827813 | 1.271352e-54 | -8.615850e-47 |
| Msa0268380 | Msa0992590 | 0.818695 | 1.714276e-52 | -8.615850e-47 |
| Msa0268380 | Msa1002040 | 0.822410 | 2.403977e-53 | -8.615850e-47 |
| Msa0268380 | Msa1024580 | 0.824193 | 9.215297e-54 | -8.615850e-47 |
| Msa0268380 | Msa1030280 | 0.830917 | 2.241524e-55 | -8.615850e-47 |
| Msa0268380 | Msa1033160 | 0.801324 | 9.499247e-49 | -8.615850e-47 |
| Msa0268380 | Msa1040770 | 0.810315 | 1.225254e-50 | -8.615850e-47 |
| Msa0268380 | Msa1049440 | 0.815717 | 8.011789e-52 | -8.615850e-47 |
| Msa0268380 | Msa1070900 | 0.819144 | 1.354701e-52 | -8.615850e-47 |
| Msa0268380 | Msa1086020 | 0.818059 | 2.388309e-52 | -8.615850e-47 |
| Msa0268380 | Msa1086060 | 0.878178 | 3.465855e-69 | -8.615850e-47 |
| Msa0268380 | Msa1086160 | 0.869949 | 2.109867e-66 | -8.615850e-47 |
| Msa0268380 | Msa1086170 | 0.902720 | 7.262171e-79 | -8.615850e-47 |
| Msa0268380 | Msa1086260 | 0.823013 | 1.740918e-53 | -8.615850e-47 |
| Msa0268380 | Msa1086290 | 0.865540 | 5.483950e-65 | -8.615850e-47 |
| Msa0268380 | Msa1086330 | 0.801723 | 7.869782e-49 | -8.615850e-47 |
| Msa0268380 | Msa1086340 | 0.821064 | 4.924968e-53 | -8.615850e-47 |
| Msa0268380 | Msa1086370 | 0.883349 | 4.838457e-71 | -8.615850e-47 |
| Msa0268380 | Msa1086440 | 0.894892 | 1.607385e-75 | -8.615850e-47 |
| Msa0268380 | Msa1086480 | 0.862323 | 5.498306e-64 | -8.615850e-47 |
| Msa0268380 | Msa1086520 | 0.809392 | 1.936054e-50 | -8.615850e-47 |
| Msa0268380 | Msa1086630 | 0.823352 | 1.450753e-53 | -8.615850e-47 |
| Msa0268380 | Msa1086690 | 0.831816 | 1.346784e-55 | -8.615850e-47 |
| Msa0268380 | Msa1086830 | 0.817550 | 3.111448e-52 | -8.615850e-47 |
| Msa0268380 | Msa1086870 | 0.882762 | 7.936466e-71 | -8.615850e-47 |
| Msa0268380 | Msa1090230 | 0.833080 | 6.549256e-56 | -8.615850e-47 |
| Msa0268380 | Msa1091690 | 0.845380 | 4.210288e-59 | -8.615850e-47 |
| Msa0268380 | Msa1120540 | 0.801074 | 1.068928e-48 | -8.615850e-47 |
| Msa0268380 | Msa1123340 | 0.819220 | 1.301787e-52 | -8.615850e-47 |
| Msa0268380 | Msa1128350 | 0.808826 | 2.558577e-50 | -8.615850e-47 |
| Msa0268380 | Msa1143140 | 0.875361 | 3.273514e-68 | -8.615850e-47 |
| Msa0268380 | Msa1143150 | 0.855992 | 4.348126e-62 | -8.615850e-47 |
| Msa0268380 | Msa1157160 | 0.822919 | 1.830838e-53 | -8.615850e-47 |
| Msa0268380 | Msa1173410 | 0.802027 | 6.815429e-49 | -8.615850e-47 |
| Msa0268380 | Msa1195860 | 0.805116 | 1.559120e-49 | -8.615850e-47 |
| Msa0268380 | Msa1209390 | 0.813102 | 3.034064e-51 | -8.615850e-47 |
| Msa0268380 | Msa1220740 | 0.807027 | 6.177170e-50 | -8.615850e-47 |
| Msa0268380 | Msa1284030 | 0.802545 | 5.333534e-49 | -8.615850e-47 |
| Msa0268380 | Msa1298740 | 0.824699 | 7.005204e-54 | -8.615850e-47 |
| Msa0268380 | Msa1309910 | 0.819544 | 1.098647e-52 | -8.615850e-47 |
| Msa0268380 | Msa1327820 | 0.812290 | 4.566017e-51 | -8.615850e-47 |
| Msa0268380 | Msa1334650 | 0.801405 | 9.144996e-49 | -8.615850e-47 |
| Msa0268380 | Msa1352820 | 0.811462 | 6.915833e-51 | -8.615850e-47 |
| Msa0268380 | Msa1354850 | 0.822076 | 2.874653e-53 | -8.615850e-47 |
| Msa0268380 | Msa1354890 | 0.895621 | 8.050028e-76 | -8.615850e-47 |
| Msa0268380 | Msa1355020 | 0.818248 | 2.163883e-52 | -8.615850e-47 |
| Msa0268380 | Msa1355060 | 0.894530 | 2.262335e-75 | -8.615850e-47 |
| Msa0268380 | Msa1365210 | 0.801110 | 1.050746e-48 | -8.615850e-47 |
| Msa0268380 | Msa1367810 | 0.801268 | 9.754442e-49 | -8.615850e-47 |
| Msa0268380 | Msa1380540 | 0.825262 | 5.158680e-54 | -8.615850e-47 |
| Msa0268380 | Msa1380580 | 0.832135 | 1.123313e-55 | -8.615850e-47 |
| Msa0268380 | Msa1385940 | 0.815894 | 7.316525e-52 | -8.615850e-47 |
| Msa0268380 | Msa1394050 | 0.846932 | 1.592032e-59 | -8.615850e-47 |
| Msa0268380 | Msa1394090 | 0.818622 | 1.780905e-52 | -8.615850e-47 |
| Msa0268380 | Msa1394100 | 0.823972 | 1.038459e-53 | -8.615850e-47 |
| Msa0268380 | Msa1394140 | 0.888217 | 7.178387e-73 | -8.615850e-47 |
| Msa0268380 | Msa1394170 | 0.813740 | 2.195970e-51 | -8.615850e-47 |
| Msa0268380 | Msa1394240 | 0.883809 | 3.276519e-71 | -8.615850e-47 |
| Msa0268380 | Msa1394280 | 0.815868 | 7.416321e-52 | -8.615850e-47 |
| Msa0268380 | Msa1406230 | 0.821904 | 3.151184e-53 | -8.615850e-47 |
| Msa0268380 | Msa1415120 | 0.821017 | 5.047635e-53 | -8.615850e-47 |
| Msa0268380 | Msa1422750 | 0.817483 | 3.222222e-52 | -8.615850e-47 |
| Msa0268380 | Msa1435470 | 0.804808 | 1.807926e-49 | -8.615850e-47 |
| Msa0268380 | Msa1458920 | 0.801162 | 1.025386e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268380 | MtrunA17_Chr4g0015681 | 96.667 | 60 | 2 | 0 | 1 | 60 | 1 | 60 | 7.64e-35 | 113 |
| Msa0268380 | MtrunA17_CPg0492901 | 96.667 | 60 | 2 | 0 | 1 | 60 | 1 | 60 | 7.64e-35 | 113 |
| Msa0268380 | MtrunA17_Chr4g0016771 | 96.667 | 60 | 2 | 0 | 1 | 60 | 1 | 60 | 7.64e-35 | 113 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0268380 | ATCG00070.1 | 76.667 | 60 | 14 | 0 | 1 | 60 | 1 | 60 | 3.76e-26 | 92.0 |
| Msa0268380 | ATCG00080.1 | 97.222 | 36 | 1 | 0 | 62 | 97 | 1 | 36 | 2.92e-19 | 73.9 |
Find 6 sgRNAs with CRISPR-Local
Find 30 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGCTTAATATCTTTAGCT+TGG | 0.440922 | 2_2:+70209943 | None:intergenic |
| ACTGGCATAAAATCTACAAT+TGG | 0.453871 | 2_2:-70210046 | None:intergenic |
| AATGATCCAGGACGTAATCC+TGG | 0.474800 | 2_2:+70210593 | Msa0268380:CDS |
| GGATTCCTATCTAATGATCC+AGG | 0.536202 | 2_2:+70210581 | Msa0268380:CDS |
| TCACGTCCAGGATTACGTCC+TGG | 0.548081 | 2_2:-70210599 | None:intergenic |
| TACGTCCTGGATCATTAGAT+AGG | 0.581605 | 2_2:-70210586 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCCAAATATTAAAATTTT+TGG | + | chr2_2:70210233-70210252 | Msa0268380:intron | 10.0% |
| !!! | TATCCAAAAATTTTAATATT+TGG | - | chr2_2:70210239-70210258 | None:intergenic | 10.0% |
| !! | ATTTCAAAAAAAAAAAACTT+AGG | - | chr2_2:70210390-70210409 | None:intergenic | 10.0% |
| !!! | AATTTTAATATTTGGAATCA+AGG | - | chr2_2:70210231-70210250 | None:intergenic | 15.0% |
| !!! | CGTTTTTTTTTTAATTATCT+TGG | + | chr2_2:70210485-70210504 | Msa0268380:intron | 15.0% |
| !! | GAAAAAACTACTTGAATAAA+GGG | - | chr2_2:70209990-70210009 | None:intergenic | 20.0% |
| !! | AGAAAAAACTACTTGAATAA+AGG | - | chr2_2:70209991-70210010 | None:intergenic | 20.0% |
| !!! | TTATTCAAGTAGTTTTTTCT+TGG | + | chr2_2:70209991-70210010 | Msa0268380:CDS | 20.0% |
| !! | TGAAAATTCTATTATTCGAT+TGG | + | chr2_2:70210277-70210296 | Msa0268380:intron | 20.0% |
| !!! | TGTGGATATGAAAAAAATTT+TGG | + | chr2_2:70210328-70210347 | Msa0268380:intron | 20.0% |
| !! | TCTTATAAACTTAGTATCAA+AGG | + | chr2_2:70210419-70210438 | Msa0268380:intron | 20.0% |
| !!! | TTTTTCTCTTAGCTTTTGTT+TGG | + | chr2_2:70210083-70210102 | Msa0268380:CDS | 25.0% |
| !!! | TTTGTTTCTCTTTTCATCTT+CGG | + | chr2_2:70210560-70210579 | Msa0268380:CDS | 25.0% |
| ! | AATTGGATTCAAAAAAGCGT+AGG | - | chr2_2:70210032-70210051 | None:intergenic | 30.0% |
| ACTGGCATAAAATCTACAAT+TGG | - | chr2_2:70210049-70210068 | None:intergenic | 30.0% | |
| !! | AAAAAGAGTAAGGGTATTAC+TGG | - | chr2_2:70210067-70210086 | None:intergenic | 30.0% |
| GCTAAGAGAAAAAAGAGTAA+GGG | - | chr2_2:70210076-70210095 | None:intergenic | 30.0% | |
| AGCTAAGAGAAAAAAGAGTA+AGG | - | chr2_2:70210077-70210096 | None:intergenic | 30.0% | |
| !! | AATCAAGATCTAGGTATTGG+TGG | - | chr2_2:70210309-70210328 | None:intergenic | 35.0% |
| CACAATCAAGATCTAGGTAT+TGG | - | chr2_2:70210312-70210331 | None:intergenic | 35.0% | |
| CAATACCTAGATCTTGATTG+TGG | + | chr2_2:70210310-70210329 | Msa0268380:intron | 35.0% | |
| CATATCCACAATCAAGATCT+AGG | - | chr2_2:70210318-70210337 | None:intergenic | 35.0% | |
| GAGAATCTATTCTCTTTCTC+TGG | + | chr2_2:70210462-70210481 | Msa0268380:intron | 35.0% | |
| ! | TTCAAAAAAGCGTAGGCTTC+AGG | - | chr2_2:70210025-70210044 | None:intergenic | 40.0% |
| GGATTCCTATCTAATGATCC+AGG | + | chr2_2:70210581-70210600 | Msa0268380:CDS | 40.0% | |
| TACGTCCTGGATCATTAGAT+AGG | - | chr2_2:70210589-70210608 | None:intergenic | 40.0% | |
| !! | CAAGATCTAGGTATTGGTGG+TGG | - | chr2_2:70210306-70210325 | None:intergenic | 45.0% |
| AATGATCCAGGACGTAATCC+TGG | + | chr2_2:70210593-70210612 | Msa0268380:CDS | 45.0% | |
| !!! | AATAAATTCTTAATTTTTTT+CGG | - | chr2_2:70210154-70210173 | None:intergenic | 5.0% |
| TCACGTCCAGGATTACGTCC+TGG | - | chr2_2:70210602-70210621 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 70209944 | 70210628 | 70209944 | ID=Msa0268380;Name=Msa0268380 |
| chr2_2 | mRNA | 70209944 | 70210628 | 70209944 | ID=Msa0268380-mRNA-1;Parent=Msa0268380;Name=Msa0268380-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|0|0|1|0|0|2|0|97 |
| chr2_2 | exon | 70209944 | 70210118 | 70209944 | ID=Msa0268380-mRNA-1:exon:22548;Parent=Msa0268380-mRNA-1 |
| chr2_2 | exon | 70210510 | 70210628 | 70210510 | ID=Msa0268380-mRNA-1:exon:22549;Parent=Msa0268380-mRNA-1 |
| chr2_2 | CDS | 70209944 | 70210118 | 70209944 | ID=Msa0268380-mRNA-1:cds;Parent=Msa0268380-mRNA-1 |
| chr2_2 | CDS | 70210510 | 70210628 | 70210510 | ID=Msa0268380-mRNA-1:cds;Parent=Msa0268380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
